>input_sequence_45760
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-----------------------------------------ATGGTGGTTCTCGCCGGCTCGCCCGCCGTCGATCACATC
CCGCTCCTCAGGTCGCCCGACCCCGGGGACAACTTCTCCGGCATGCCGGTCGTCGACCTCTCCAGCCCTGGCGCGCCGCG
GGCCATCGCCGACGCGTGCGAGCGCTTCGGCTTCTTCAAGCTCGTCAACCACGGGGTGCCCGCGGACACGATGGACAGGC
TCGAGTCGGAGGCCGTCAGGTTCTTCTCGCTGCCGCAGGCCGACAAGGACCGCTCCGGCCCGGCCTACCCGTTCGGCTAC
GGCAGCAAGCGCATCGGGCTCAATGGCGACATGGGGTGGCTCGAGTACCTGCTCCTCGCCGTCGACGCCGCGTCGCTCTC
CGCCGCCTGCGCCGTCCCGTCCTGCGCGCTCTTCCGGTACGTTCAAAATGGCTGCTGCCTGCGGTGCCCGCGCGA-----
-----------------ACGACGCGTGTCTGGTTGGTCTCACCGAGTGCTTACGTTACACGCATGGCGTGTGTTTGCAGG
GCGGCGCTGAACGAGTACATCGCGGCGGTGCGGAAGGTGGCGGTGCGGGTGATGGAGGCGATGGCGGAGGGACTGGGCAT
TGCGCCCGTCGACGCGCTGAGCGCGATGGTGACGGCGGAGGGCAGCGACCAGGTGTTCCGGGTGAACCACTACCCGCCGT
GCCACGCGCTGCAGGGGCTGGGCTGCAGCGCCACCGGCTTCGGCGAGCACACGGACCCGCAGCTCATCTCGGTGCTGCGC
TCCAACGGCACGTCCGGCCTGCAGATCGCGCTCCAGAACGGGCAGTGGGTGTCCGTGCCCTCGGACCGCGACGCCTTCTT
CGTCAACGTCGGCGACTCGTTGCAGGTATGCCCGCCCGT---TCCTCACCCCGACACGTGACGCCTTCTCGTGCACGCGC
TGACCTGTTTCTTTTTCTACTACTACTAGCACATTTATACTATTCTACTAAAACGATTTGCACTGTGCGCTTTACCAAAA
TGACGTGAGGCATGATCAAATTGGAGATAGTGCACTAGTAGCACGCAGAGCCATC-----GTTTGGTTCGCATCATCGCC
AGTAAAAACGAAGAACGTCCTATCACCCCGAGCAACTAACAAAAAACCGTAG----------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------TAAAATAAATAAATA
AACCGAGAAAACGAAAGAAAGAAAGA------------GATGGTTGTGATGCGCGTCGGTACGGCAGCCACGGCAGAAGC
AGGAAAAGGTGGCTCCCTCCCTGGACCAAATAACTGCTGCCGGCCCATCGCATATTCGCCACATCGGTATAAATCCGTTT
AGGCACATGAGCTTCGCGTGGTTGCTGCATGGATGGCATCTACTGTGATTGCCACCTGTGT--GCTTGCTGCCTACGAAT
CGTATCGTATCGTATGTAGTATGCCTTGATCCCACATACTACAGTTTCTTTTTCTAATATTTGGATGGATGTGTGTGTAT
ATATAGGTGCTGACGAACGGGAGGTTCAAGAGCGTGAAGCACAGGGTGGTGGCCAACAGCCTAAAGTCTAGGGTTTCCAT
GATCTACTTTGGAGGGCCAGCGATGACACAGAGGATTGCACCATTGCCGCAGCTGCTGGGCGCGGGCGAGCAGAGCCTGT
ACAAGGACTTCACATGGGGCGAGTACAAGAAGGCTGCCTACAACTCCAGGCTCGGGGACAACAGGCTGGCTCACTTCCAC
AGGTAG--------------------------------------------------------------------------
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>chr3A_1_TraesCS3A01G294000
ACTATCCATCTAGCTCACCGCTCACGAGCCTTCCTGCAGGGTGCAGTTGCCCCGTGATTGGCCGTCCTCTCGGCGGGTTT
CCTAGTTCCCAATGCCGCGCCCCTAGACTAGGTACTAGGTAGGTGACCGCGAATTCAGCTGAAATCGCGAGACGGTGAGC
CGGACAATGGTCGGGTCAATCTCTGGATCATCGTTTC-CCGCCCTACTTTACTCGCCCACGGATTGACTCTATATAGTTA
CATCGTTTATCCAATTGGGATGTACTAGAAGG--------------------------GAATGAACGACGCATGCATGAT
GCTGGCCTAACCAACGCGTCC---CGTGCGAAGCATCAGGCATGATCTAATCGAGCGC--ATTGCGTGTCGCGCTCCATC
GCCGATCAAACATGTCATTTGCCAAATGGAGTTG---------TAGCGACGACGATCGACAAC-GGAGGTGATTTGGCAC
AACCATTGCCAGCGACGGTCGCCCGAGATTTTACCGCAAGGAGATTTGGTGAGATGAGATGGGGGAAATAGAGCATGGGC
GCGAAGCCCTGGCGGCATGGGTGCCGTAGGCGGGGCCGGTGGATCTCCTGGGGACACGTCTGAGACCCCGCCACGATCGC
CTGGCTCCATTGCCACCACAGACCAGCAAGCGAGAAAAGAGGAGGGCGCGACATGAGCGGGGCATTCCCCCAACCATCTG
CGAGGCCGGATGCGATGAAGCAGCGAGCCAACCAACCCCATCGCCCTCGCCCCGATTCATCTCTTCTCTCCTCCTCCTTT
CCCACTGTCAGTTGGCCCTTCCCCTGCCCTGCCCCCACCGCGCGCCGCTCCTCCCCGATCG-------------------
----CCTCTCCCCTCCTCTATATATATGCCCCGCGGCCTCCCCCACACACACACTCCAACTCAGTGGCAACAGCATCTCC
CCTGTTCCGCCCGCCCGCTCGCTCGCCTCTGTTTCTTTTCTTTCTTTCCACGGCGGCTCTGCTCCGCTCCTCACCTCCCT
CGATCGCACATACCATATATTG----------------GCCATGGTGGTTCTCGCCGGCTCGCCCGCCGTCGATCACATC
CCGCTCCTCAGGTCGCCCGACCCCGGGGACAACTTCTCCGGCATGCCGGTCGTCGACCTCTCCAGCCCTGGCGCGCCGCG
GGCCATCGCCGACGCGTGCGAGCGCTTCGGCTTCTTCAAGCTCGTCAACCACGGGGTGCCCGCGGACACGATGGACAGGC
TCGAGTCGGAGGCCGTCAGGTTCTTCTCGCTGCCGCAGGCCGACAAGGACCGCTCCGGCCCGGCCTACCCGTTCGGCTAC
GGCAGCAAGCGCATCGGGCTCAATGGCGACATGGGGTGGCTCGAGTACCTGCTCCTCGCCGTCGACGCCGCGTCGCTCTC
CGCCGCCTGCGCCGTCCCGTCCTGCGCGCTCTTCCGGTACGTTCAAAATGGCTGCTGCCTGCGGTGCCCGCGCGA-----
-----------------ACGACGCGTGTCTGGTTGGTCTCACCGAGTGCTTACGTTACACGCATGGCGTGTGTTTGCAGG
GCGGCGCTGAACGAGTACATCGCGGCGGTGCGGAAGGTGGCGGTGCGGGTGATGGAGGCGATGGCGGAGGGACTGGGCAT
TGCGCCCGTCGACGCGCTGAGCGCGATGGTGACGGCGGAGGGCAGCGACCAGGTGTTCCGGGTGAACCACTACCCGCCGT
GCCACGCGCTGCAGGGGCTGGGCTGCAGCGCCACCGGCTTCGGCGAGCACACGGACCCGCAGCTCATCTCGGTGCTGCGC
TCCAACGGCACGTCCGGCCTGCAGATCGCGCTCCAGAACGGGCAGTGGGTGTCCGTGCCCTCGGACCGCGACGCCTTCTT
CGTCAACGTCGGCGACTCGTTGCAGGTATGCCCGCCCGT---TCCTCACCCCGACACGTGACGCCTTCTCGTGCACGCGC
TGACCTGTTTCTTTTTCTACTACTACTAGCACATTTATACTATTCTACTAAAACGATTTGCACTGTGCGCTTTACCAAAA
TGACGTGAGGCATGATCAAATTGGAGATAGTGCACTAGTAGCACGCAGAGCCATC-----GTTTGGTTCGCATCATCGCC
AGTAAAAACGAAGAACGTCCTATCACCCCGAGCAACTAACAAAAAACCGTAG----------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------TAAAATAAATAAATA
AACCGAGAAAACGAAAGAAAGAAAGA------------GATGGTTGTGATGCGCGTCGGTACGGCAGCCACGGCAGAAGC
AGGAAAAGGTGGCTCCCTCCCTGGACCAAATAACTGCTGCCGGCCCATCGCATATTCGCCACATCGGTATAAATCCGTTT
AGGCACATGAGCTTCGCGTGGTTGCTGCATGGATGGCATCTACTGTGATTGCCACCTGTGT--GCTTGCTGCCTACGAAT
CGTATCGTATCGTATGTAGTATGCCTTGATCCCACATACTACAGTTTCTTTTTCTAATATTTGGATGGATGTGTGTGTAT
ATATAGGTGCTGACGAACGGGAGGTTCAAGAGCGTGAAGCACAGGGTGGTGGCCAACAGCCTAAAGTCTAGGGTTTCCAT
GATCTACTTTGGAGGGCCAGCGATGACACAGAGGATTGCACCATTGCCGCAGCTGCTGGGCGCGGGCGAGCAGAGCCTGT
ACAAGGACTTCACATGGGGCGAGTACAAGAAGGCTGCCTACAACTCCAGGCTCGGGGACAACAGGCTGGCTCACTTCCAC
AGGTAGCCTCGCCTGCCGCCTGGGCCCGCTCAACGAGCAGCTTTTACCAACCCAGCCAGCTACCTAGCTTAGCTAGCT--
CTGCCGTGGCTTGTAGTATTTCCCACACGATC--------GATGAAGATGAAGAGGGCGGAAGCTACTACTGTACTAGAA
AAGAAAAAGAAACAGGGCTAAAAGAAGATGATTTCAAGATTCACATGCAGCAGTAGAGCTGCGGAGGTAGCTAGTAAGTA
GTAGATCCGTTTTGCCTGCGTGTGCGTGTGCGTGTGA-----CGTGTGTGTTCATAGTTGCTAAAACCCGCCTTTCCTCT
TCGGGAATGCCGGACGAACGATGAACAGATAAGTTGACTTGATGAA----CAGTTAGTGTGAACCAGATATACTAGCAGA
GGGTGGCATCAAAGTGGTCTTCTGATCTTTTCCCAAATTCATGAGTGGCAGTATCTGGCCTCGATCTTGAAGCATAATTG
GTTTGCTGCCAAAAATTAGCATGCCAATATTTGTCATTGTGTCAAATATTGGCAACTATTTGGTTGGCTACGAGTTATTT
TGCCTCTCTCACATAAAGTTGCCAATAGTTGGCAAGTCTCGGTATTGCCAATAGTTGACAGTGCCAATATTTGGCAAGTT
AAATATTGGTAGGAAACCAATTATGCTCTTGTTTTCTGTACCTCCGATAGCTG---------------------------
--------------------------------------------------------------------------TAATTG
TGGTGCCCGTAGCGTAGTCGTGTGTACACGTGGGCCTTCTGTTTAACCTGCCAATGATCCAGCGTTTCCCTTTCGCTCTT
TCAACAGTCTTTCGTAGCGTGCGGCTTGAACGCGCGGTGATGGAGATCTCTGTCTGTCTTGACTTC--------------
--------------------------------------------------------------------------------
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------------------------------AATTGCCAAAATGAATTGGTGCCTTTATTGCTGGCAGGCCAGCAGCTCGT
TGGCATTACGAATCCTGGTAGGCCCGGTCCGACGGGGTCCATTGACGGAGAATTTCGGGCCTGCACCAGCGGGGGCCCGC
CGTGCCACCGGAACTCATGGCCTGCCCGCCGGTGCCGCTTACCGCTGCTG------------------------------
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---------------------------------------------
>chr3B_63
CGTCCC--------------------------------------------------------------CTCGGCGGGTTT
CCTAGTTCCCAATGCCGCGCCCCTAGACTAT----------GGTGACCGCGAATTCAGCTGAAATCGCGAGACGGTGAGC
CCGACAATGGTCGGGTCAATCTCTGAATCATCGTTTCTCCCCCCTTCTTTACTCACCCACAGATTGACTTTACACG----
CATCGTTTATCCAATGGGATCTACCGATCTAGTACTTTGGGACGGAGGGAATACAAGAGAATAAACGACGCAGGCATGAT
GCTGGCCTAACTAACGCG---TATCGTGTGAAGCATCAGGCATGATCTAATCGAGCGCGTATTGCGTGTCGCACTCCATC
GCCGATCAAACATGCCATTTGCCAAATGGAGCGAACCAGCAGTTAGCAACGACGATCGGCAGC-GA--GTGATTTGGCTC
AACCTTTGCCAGCTACGCTCGCCCGAGATTTTACC-------------GTGAGATGAGATACGGCA----------GGGC
GCGAACCCCTGGCGGCATGGGTGCCGTACGCAGGGCCGGTGGATCTCCTTGGGACACGTCTGAGACCCCGCCACGATCGC
CTGGCTCCATTGCCACCACAGACCACCAAGCGAGAAAAGAGGAGGTGGCGACATGAGCGGGGCATTCCCCCAACCATCTG
CGAGCCCGGATGCGATGAAGCAGCGAGCCAACCAACCCCATCGTCCTCGTCCCGATTCATCTCTTCTCTCCTCCTCCTTT
CCCACTGTCAGTTGGCCCTTCCCCTGCCCTGCCCCCACCGCGCGCCGCTCCTTCCCGATCGGCAGGTGCCCTCGCCTCTC
CTCTCCTCTCCCCTCCCCTATATATATGCCCCGCGCCCTCCCCC--ACACACACTCCAACTCAGTGGCAACAGCATCTCC
CCTGTT----CCGCCCGCCCGCTCGCCTCTGTTTCTTTTCTTTCTTTCCACAGCGGCTCTGCTCCGCTCCTCACCTCCCT
CGATCGCACATA----CCATATTTGGTAGCTCAGCACAGCCATGGTGGTTCTTGCCAGCACGCCCGCCGTCGATCACATC
CCGCTCCTCAGGTCCCCCGACCCCGGGGACTACTTCTCCGGCATGCCGGTTGTCGACCTCTCCAGCCCTGGCGCGCCGCG
GGCCATCGCCGACGCCTGCGAGCGCTTCGGGTTCTTCAAGCTCGTCAACCACGGGGTGCCAGCGGACACGATGGACAGGC
TCGAGTCAGAGGCCGTCAGGTTCTTCTCGCTGCCGCAGGCCGACAAGGACCGCTCCGGCCCGGCCTACCCGTTCGGCTAC
GGCAGCAAGCGCATCGGGCTCAATGGCGACATGGGCTGGCTCGAGTACCTCCTCCTCGCCGTCGAGTCCGCGTCGCTCTC
CGGCGCCTGCACCGTCCCGTCCTGCGCGCTCTTCCGGTACGTTCAAA-----------------TGCCCGCGCGAACGGA
ATGCAAGCCACCGCGATACGACGCGTGTCTGGTTGGTTTCACCGAGTACTTATGTTACATGGCGTGT-----TTTGCAGG
GCGGCGCTGAACGAGTACATCGCGGCGGTGCGGAAGGTGGCGGTGCGGGTGATGGAGGCGATGGCGGAGGGGCTGGGCAT
TGCGCCCGTTGACGCGCTGAGCGCGATGGTGACGGCGGGGGGGAGCGACCAGGTGTTCCGGGTGAACCACTACCCGCCGT
GCCACGCGCTGCAAGGGCTGGGCTGCAGCGCCACAGGCTTCGGCGAGCACACCGACCCGCAGCTCATCTCCGTGCTGCGC
TCCAACGGCACGTCCGGCCTGCAGATCGCGCTCCAGAACGGGCAGTGGGTGTCCGTGCCCTCGGACCGCGACGCCTTCTT
CGTCAACGTCGGCGACTCGTTGCAGGTATGCCCGCCCGT---TCCTGACCCCGACACGTGACGCCTTTTCGTGCACGCGC
TAACCTG-TTCTTTTTCTACTACTACTAGCACATTTATACTTTTCTA---AAACGATTTGCACTGTACGCTTCACTAAAA
TGACGTGAGGCATGATTAAATTGGAGATAGTGCACTGCTAGCACGCAGAGCCATC-----GT-----TCGCATCATCACC
AGTAAAAACGAACAACATCCTATCACCCTGAGCAACTAACAAAAAAACGTAG----------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------TAAAATGAAGAAATA
AACCGAGAAAACGAAAGAA-GAAAGA------------GATGGTTGTCATGCGCGCTGGTACGGCTGCCACGGCAGAAAC
AGGAACAGGTGGCTCCCTCCCTGGACCAAATAACTGCTGCCGACCCATCGCATATTCGCCACATCAGTATAATCCG--TT
AGGCACATGAGCTTCGCGTGATTGCTGCATGACATCTTACTAATCGCTAGCTG---TGTGT--TCTTGCTGCCTACGTAC
CGTATCGTATA--------TATGCCTTGATCTCATGTACTACTGTTTTATTTTTGTGA---------------TGTGTAT
GTATAGGTGCTGACCAACGGGAGGTTCAAGAGCGTGAAGCACAGGGTGGTGGCCAACAGCCTAAAGTCTAGGGTTTCCAT
GATCTACTTTGGAGGGCCAGCGATGACACAGAGGATTGCACCATTGCCGCAGCTGCTGGGCGCGGGAGAGCAGAGCCTGT
ACAAGGACTTCACATGGGGCGAGTACAAGAAGGCTGCCTACAACTCGAGGCTCGGGGACAACAGGCTGGCTCAGTTCCAC
AGGTAGCCTCGCCTGCCGCCTGGGCCTGCTCAAGGAGCAGCTTTTACCAAGCCAGCTAGCT--CTAGCTTAGCTAGCT--
CTGCCGTGGCTTGTA---TTTCCCACACGATC--------GATGAAGATCAAGAGGGGGGGAAGCTAC----TACTAGAA
AAGAAAAAGAAACAGGGCTAAAAGAAGATGATTTCAAGATTCACATGCAGTAGTAGAGCTGCGGAGGTAGCTAGATCCTT
TT--------------TGCGTGTGCGCGTG------------CGTGTGTGTTCATAGTTGCTAAAACTCGCCTTTCCTAT
TCGGGAATGCCGGACGAACGATGAACAGATAAGTTAACTTGATGAA----TAGTTAGTGTGAACCAGATACAGCAGAGGA
T--TGGCATCAAAGTGGTCTTCTGATATTTTCTCATATTCATGAGTGGTAGTACCTGGCTTCGACTT-------------
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---------------------------------------------
>chr3D_63
--------------------------------------------------------------CGTCCTCTCGGCGGATTT
CCTAGTTCCCAATGCCGCGCCCCTAGAC-------TAGGTAGGCGACCGCGAATTCAGCTGAAATCGCGAGACGGCGAGC
CGGACAATGGTCGGGTCAATCTCTGAATCATCGTTTCTCTCCCCTTCTTTACTCGCCCACAGATTGACTCTATATAGCTA
CATCGTTTATCCAATTGGGATGTACTAGAAGG--------------------------GAATAAACGACGCATGCATGAT
GCTGGGCTAACCAACGCGTACTATCGTGTGAAGCATCAGGCGTGATCTAATCGAGCGC--ATTGCGTGTCGCGCTCCATC
GCCGATCAAACATGTCATTTGCCAAATGGAGCAGTAGCA------------ACGATCGACAACGGA--GTGATTTGGCAC
AACCTTTGCCAGCGACGCTCGCCCGAGATTTTACCGCAAGGAGATTTGGTGAGATGAGATAGGGGAAATAGAGTATGGGC
GCGAACCCCTGGCGGCATGGGTGCCGTACGCGGGGCCGGTGGATCTCCTGGGGACACGTCTGAGACCCCGCCACGATCGC
CTGGCTCCATTGCCACCACAGGCCAGCGAGCGAGAAAAGAGGAGGCCGCGACATGAGCGGGGCATTCCCCCAACCATCTG
CGAGGCCGGATGCGCTGAAGCAGCGAGCCAACTAACCCCATCGGCCTCGTCCCGATTCATCTCTTCTCTCCTCCTCCTTT
CCCACTGTCAGTTGGCCCT-----TGCCCTGCCCCCACCGCGCGCCGCTCCTTCCCGATCG-------------------
----CCTCTCCCCTCCCCTATATATATGCCCCGCGGCCTCCCCT--ACACACACTCCAACGCAGTGGCAACAGCATCTCC
CCTGTT--------CCGCCCGCTCGCCTCTGCTTCTTTAG-TTCTTTCCAGAGCGGCTCTGCTCTGCTCCTCGCCTCTCT
CGATCGCGCATACGTACCATATTTGGCAGCC-----CAGCCATGGTGGTTCTCGCCAGCACGCCCGCCGTCGATCACATC
CCGCTCCTCAGGTCGCCCGACCCCGGGGACTACTTCTCCGGCATGCCGGTGGTCGACCTCTCCAGCCCTGGCGCGCCGCG
GGCCATCGCCGACGCGTGCGAGCGCTTCGGGTTCTTCAAGCTCGTCAACCACGGGGTGCCCGCGGACACGATGGACAGGC
TCGAGTCGGAGGCCGTCAGGTTCTTCTCGCTGCCGCAGGCCGACAAGGACCGCTCCGGCCCGGCCTACCCGTTCGGCTAC
GGCAGCAAGCGCATCGGGCTCAATGGCGACATGGGGTGGCTCGAGTACCTGCTCCTGGCCGTCGACTCCGCGTCGCTCTC
CGGCGCCTGCGCCGTCCCGTCCTGCGCGCTCTTCCGGTACGTTCAAA-----------------TGCCCGCGCGAACGGG
ATGCAAGCCACTGCGATACGACGCGTGTCTGGTTGGTCTCACCGAGTGCTTACGTTGCACACATGGCGTGTGTTTGCAGG
GCGGCGCTGAACGAGTACATCGCGGCGGTGCGGAAGGTGGCGGTGCGGGTGATGGAGGCGATGGCGGAGGGGCTGGGCAT
TGCGGCCGTGGACGCGCTGAGCGGGATGGTGACGGCGGAGGGGAGCGACCAGGTGTTCCGGGTGAACCACTACCCGCCGT
GCCACGCGCTGCAGGGGCTGGGCTGCAGCGCCACCGGCTTCGGCGAGCACACGGACCCGCAGCTCATCTCCGTGCTGCGC
TCCAACGGCACGTCCGGCCTGCAGATCGCGCTCCAGAACGGGCAGTGGGTGTCCGTGCCCTCGGACCGCGACGCCTTCTT
CGTCAACGTCGGCGACTCGTTGCAGGTATGCCCGCTCCTGAGTCCTGACCCTGACACGTGACGCCTTTTCGTGCACGCGC
CACTCTG-TTCTTTTTCTACTACTACTAGCACATTTATACTTTTCTA---AAACGATTTGCACTGTGCGCTTTACTAAAA
TGACGTGAGGCATGATTAAATTGGAGATAGTGCACTACTAGCACGCAGAGCCATCGTTTGGT-----TCGCATCATCACC
AGTAAAAACGAACAACATCCTATCACCCTGAGCAACTAACAAAAACCGTAGTAATAAAATAATAGTTTGTCTAATTCACA
TCTAGATGTTTTTTAAGGATGTCACATCTAACCTTCCACAAACATGTAATGTAGCAACAAAAAACAAAAAAAAACTAGGA
TAAAAAAATAGATCATAAATAAAGTGGACATCAGTTTAGATGTAGATATGTCTTAGACAGACTCATA----AAATAAACA
AACCGAGAAAACGAAAGAAAGAAAGAAAGAAAGAAAGAGATGGTTGTGATGCACGTCGATACGGCTGCCACGGCAGAAAC
AGGAACAGGTGGCTCCCT----GGACCAAATAACTGCTGCCGACCCATCGCATATTCGCCACATCAGTATAATCCG--TT
AGGCACATGAGCTTCGCGTGATGGCTGCATGGCATCTTACTAATCGTTAGCTG---TGTGT--TCTTGCTGCTTACGTAT
CGTATCGTATA--------TATGCCTTGATCTCATGTACTACGGTTTTATTTTTGGGA---------------TGTGTGT
GTGTAGGTGCTGACCAACGGGAGGTTCAAGAGCGTGAAGCACAGGGTGGTGGCCAACAGCCTAAAGTCTAGGGTTTCCAT
GATCTACTTTGGAGGGCCAGCGATGACACAGAGGATTGCACCATTGCCGCAGCTGCTGGGCGCGGGAGAGCAGAGCCTGT
ACAAGGACTTCACATGGGGCGAGTACAAGAAGGCTGCCTACAACTCCAGGCTCGGGGACAACAGGCTGGCTCAGTTCCAC
AGGTAGCATCGCCTGCCGCCTGGGCCCGCTCAAGGAGCAGCTTTTACCAAGCCAGCCAGCTAGCTAG--TAGCTAGCTAG
CTGCCGTGGCTTATG---TTTCGCACACCGTGAAGACGAAGATGAAGATGAAGAGGAAAG-------C----TACTAGAA
AAGAAAGGGAAACAGAGCTAAAAGAAGATGATTTCAAGACACAT-----GTGGTAGAGCTGCGGACGTAGCTAGTA----
---GATCTTTTTCGTGTGCGTGTGCGCGTGTGTGTGCGTGTGCGTGTGTGTTCATAGTTGCTAAAACTCGCCTTTCCTAT
TCGGGAATGCCGGACGAACCATGAACAGATAAGTTAACTTGATGAATAGTTAGTTAGTGTGAACCAGATATA--------
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---------------------------------------------
>chr1D_1776
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--------------------------------------CGGCCAGTGTGTGTCCGTGCCCTCCGACCGCGACGCCTTCTT
CGTCAACGTCGGCGACTCGTTGCAGGTATGCT-GCCTGT---TCCTGACCCTGACACGTGACGCCTTTCCGTGCACGCGC
TAATCTG-TTCTTTTTCTACTACT---AGCACATTTTTACTTTTCTA---AAACGATTTGCACTGTACGCCTTACTAAAA
TGACGTGAGGCATGATTAAATTGGAGATAGTGCACTACTAGCACGCAGAGCCATCGTTCGGT-----TAGCATCATCACC
AGTAAAAACGAAGAACATCCTATCACCCCGAGCAACTAACAAAAAAACGTAG----------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------TA----AAATAAATA
AACCGAGAAAAAGAAAGAAAGA----------------GATGGTTGTGACGCGCGTCGGTACGGCTGCCACGGCAGAAAC
AGGAACAGGTGGCTCCCT----GGACCAAATAACTGCTGCCGACCCCTCGCATATTCGCCACATCAGTATAATCCG--TT
TAGGCACA----------TGATTGCTGCATGGATGGCATCTAGTGTGATTGCCACCTGTGTGTGCTTGCTGCCTACGAAT
CGTATCATATCGTATGTA---TGCCTTGATCTCACATACAGT------TTTTTTTAATAT--------------------
--------------------------------------------------------------------------------
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---------------------------------------------
>chr4A_3110
TTGAG---------------------------------------------------------------------------
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------------------------------------------------------------------------CATAATTA
GTTTGCTGCCAAAAATTGGCATGCCAATGTTTGGCATTGTGCCAAATATTGGCAACTACTTGGTTGGCTACGAGTTGTTT
TGCCTCTCTCACATAAAGTTGCCAATAGTTGGCAAGTCTCGGTATTGCCAATAGTTGGCAGTGCCAACATTTGGCAAGCC
AAATATTGGTAGCAAACCAATTATGCTCTTTCCCCAAGTCTTCCCAAAGGTTCTACTTGGCACAAACACTAATTAAAACA
TAAAACCACATCTAAACAGAGTCTAGATGAATTATTTATTACTAAATATGATCAAAAAGCAAAGAACAAAAATATAATTG
GGTTGCCCCCCAACAAGCGATATCGTTTAGCGCCCCTAGCTAGGCATGATGATTTCAATGATGCTCACATAAAAGATAAG
AATTGAAACATAAAGAGAGCATCATGAAGAATATGACTATCACATTTTAGTCTAACCCACTTCCTATGTATAGGGATTCT
GTGAGCAAACAACTTATGGGAACAATAATCAACTAGCATAGGAAGGCAAAATAAGCATAACTTTAAAACTTTAAGCACAT
AGAGAGGAAACTTGATATTACTGCAATTCCTACAAGCATATGTTCCTCCCTCATAATAATTTTCAGTAGCATCATGAATG
AATTCAATAATATAACCATCACATAAAGCATTCTTTTCGTGATCTAAAAGCATAGAAAATTTACTACTCTCCACATAAGC
AAGATTCTTCTCATTCGGAATAGTGGGAGTATCATAAGAAACTCGAATACTATAAATTGTTTCCACATTAAAAGATCAGT
GTTCAGAAAAAGGGGTAATCATAATCATGACAAGTTTTAATACAATCATCACTACTTTTTAGAGCATACATATCATCACA
ATAATTATCATAAGTAGCAACTTTGTTCTCATCATAATCGATTGAAACCTCTTCCAAGATAGTGGAATCATTACTAGACA
AAGTCATGACCTCTCCAAATCCACTTTCATAATTGTCAAAATAAGATTCAACATCCTCCAAAATAGTGAGATCATTACTT
CCTAAAGTTGACACTCTTCCAAACCCACTTTCATCAATATAACCATCATACATAGGAGGTATGCTATCATCATAATAAAT
TTTCTCATCAAAACTTGGGAGACTAAAAATATCATCTTCATCAAAGGTAGCATCCCCAAGCTTGGGACAAACATTAATTG
CAGCAAATACATTCTCAAACATGTCATTCTCATCAAACATAGCATCCCCAAGCTTGGGCCTTTTCATATCATAAGCATAA
TCACTCTCATCATTAATAGTATGGATAGCACCAATAGTATAACAATTATCAGCATCACAATGAAAAATAGGAGCAACATC
ATTTGGGACTCTCCAATAAAAAATGGCAGCAAATCTCGTGAGCGCTAAAGTTTCTGTTTTTTACAGCAAGATCGCAAAGA
CTTTGAGCATAATTGGTTTGCTGCCAAAAATTGGCATGCCAATGTTTGGCATTGTGCCAAATATTGGCAACTACTTGGTT
GGATACGAGTTGTTTTGCCTCTCTCACATAAAGTTGCCAATAGTTGGCAAGTCTCGGTATTGCCAATAGTTGGCAGTGCC
AACATTTGGCAAGCCAAATATTGGCAGCAAACCAATTATGCTCTT
>SNPs
SS--S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------
------------------------------SSSSS---------------------------------------------
-------------------------S--------------S----S--------------S----------------S--
--------------------------------------------------------------S-----------------
-------------------S--------S---------------------------------------------------
-------------------------------SS--------------S-----------------SSS------------
----S------------S------------------------------------------S------------S------
-----S----------------------S---------------------------------------------------
---------------------------------------------S----------------------------------
-------------------------------------------S-----S------------------------------
----------------------------------------------------S---------------------------
----------------S---------------------------SS----------------------------------
------SSSS--------S--------------------------------S----------------------------
-------------SSSSS--SS----------------------------------S--S--------------------
------------------------------S-------------------S-----------------------------
------------------------------S-------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------S-------------
--S--------------------------------------------SSSSSSSSSSSSSSSSS----------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------S--------
---------S--------------------------------S-------------------------------------
----------------------------------------------------------------------S---------
--------------------------------------------------------------------------------
----------------------------------------------S--------------------S------------
-S-----S---------------------------------S-----SSS-------------------------S----
----------------S--------------------S------------------------SSSSS----------S--
----------------S---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------S------------S-
-----S------------------------------------S----------------------S------SS-SSS--
--------------------S---------------------S-------------------------------------
------------------S------------S----------S----S-----S------SSSSSSSSSSSSS-------
S-------------S-----------------------------------------------------------------
------------------------------------------------------------------S-------------
-------------------------------------------------------------------------S------
---------------------------------S----------------S-----------S-----------------
---------------SSS---------------------------------------S--S-SSSSSSSSSS--------
--------------------------------------------------S-------------------------SS-S
S-S----SS---S-SS----------S---S-----S------------------------------S----------S-
-----------------------------------S--------------S---------------------SS--SS--
SSS-----------------------S-----S--S------------S----S-----S----SS-SSSSS-------S
-----------------S----------S----S-------S----------------S-----------------S---
---------------------------------------------------------S---------S----------SS
------------S-----------------SSSSSSS--SSSS--S-SS-S-S---------------------------
--------------------------------------------------------------------------------
S-S-----SSSSSSS--SSS-S-SSSSSS-S-SS---SSSSSSSS-SSSSSSSS-S-SSS-SSS-SS-SSSSSS-S-SSS
SSSSS-SS-S-SSSS--S-SSSSSSSSSS-SSSSSSS-SSSSS-SS-SSS-S-SSSS-SSSS-S-S--------------
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-----------------------------------S------S-SS-SSSS-S-SSSSSSSSSSSSS-SS-S--SSS-S-
SSSS-SSSS--SS-SSSSSSSSS--SSSSSSSSSSSS-SS-SSS-SSSSSS--SSSS--SS---SSSSSSSSSSSSSSSS
SS-SS--S-SS----SSS-SSSSSSSSSSSSSSSS-SSSSS-SSSS-SS-------------------------------
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---------------------------------------------
>forward_1054
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------CTCCCT
CGATCGCACATACC------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------
>reverse_2177
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------GTCCTATCACCCCGAGCAAC--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------------
>forward_1056
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------CCCT
CGATCGCACATACCAT----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------
>reverse_2581
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------GTTGCTGCATGGATGGCATC----------------------------------------
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---------------------------------------------
>forward_1498
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------ACGTTCAAAATGGCTGCTGC----------------------
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---------------------------------------------
>reverse_3358
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------AGA
GGGTGGCATCAAAGTGG---------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------
