Multiple sequence alignment - TraesCS3A01G292600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G292600 chr3A 100.000 3004 0 0 1 3004 523329130 523326127 0.000000e+00 5548.0
1 TraesCS3A01G292600 chr3A 87.768 932 104 6 2076 3004 457620844 457619920 0.000000e+00 1081.0
2 TraesCS3A01G292600 chr2A 90.986 943 75 8 2065 3004 143374168 143375103 0.000000e+00 1262.0
3 TraesCS3A01G292600 chr2A 89.530 936 84 10 2072 3004 207406984 207407908 0.000000e+00 1173.0
4 TraesCS3A01G292600 chr7A 90.764 942 77 5 2067 3004 621822946 621822011 0.000000e+00 1249.0
5 TraesCS3A01G292600 chr7A 88.818 939 96 6 2066 3001 254424239 254425171 0.000000e+00 1144.0
6 TraesCS3A01G292600 chr7A 88.556 935 92 10 2075 3004 127455221 127454297 0.000000e+00 1120.0
7 TraesCS3A01G292600 chr7A 88.478 920 97 5 2084 3001 625915577 625916489 0.000000e+00 1103.0
8 TraesCS3A01G292600 chr1D 90.181 937 82 8 2070 3004 485644067 485643139 0.000000e+00 1212.0
9 TraesCS3A01G292600 chr1D 79.381 194 25 10 113 295 7832123 7831934 4.070000e-24 122.0
10 TraesCS3A01G292600 chr3D 93.585 795 26 6 647 1417 402472994 402472201 0.000000e+00 1162.0
11 TraesCS3A01G292600 chr3D 97.833 323 7 0 1669 1991 402471994 402471672 2.620000e-155 558.0
12 TraesCS3A01G292600 chr3D 93.103 290 13 5 98 384 402488244 402487959 4.630000e-113 418.0
13 TraesCS3A01G292600 chr3D 93.519 108 7 0 1 108 402489613 402489506 8.620000e-36 161.0
14 TraesCS3A01G292600 chr3D 94.444 90 4 1 1582 1671 402472196 402472108 1.450000e-28 137.0
15 TraesCS3A01G292600 chr3D 96.610 59 2 0 2008 2066 402471679 402471621 6.850000e-17 99.0
16 TraesCS3A01G292600 chr3D 97.436 39 1 0 614 652 402487538 402487500 1.930000e-07 67.6
17 TraesCS3A01G292600 chr3D 100.000 36 0 0 371 406 402487944 402487909 1.930000e-07 67.6
18 TraesCS3A01G292600 chr4A 89.316 936 84 9 2070 3002 120716046 120715124 0.000000e+00 1160.0
19 TraesCS3A01G292600 chr4A 78.652 178 25 8 108 274 158667995 158667820 4.100000e-19 106.0
20 TraesCS3A01G292600 chr4A 77.833 203 24 14 108 295 315837195 315836999 4.100000e-19 106.0
21 TraesCS3A01G292600 chr3B 91.656 767 26 9 623 1355 527910216 527909454 0.000000e+00 1027.0
22 TraesCS3A01G292600 chr3B 97.099 517 8 2 1550 2066 527909452 527908943 0.000000e+00 865.0
23 TraesCS3A01G292600 chr3B 92.408 461 28 6 160 617 527910755 527910299 0.000000e+00 651.0
24 TraesCS3A01G292600 chr3B 79.592 147 22 6 155 295 760820280 760820136 6.850000e-17 99.0
25 TraesCS3A01G292600 chr3B 92.857 56 2 1 98 153 528049428 528049375 2.480000e-11 80.5
26 TraesCS3A01G292600 chr3B 88.136 59 5 2 2 60 528074251 528074195 5.370000e-08 69.4
27 TraesCS3A01G292600 chr6D 80.357 168 22 8 113 271 319661786 319661951 1.890000e-22 117.0
28 TraesCS3A01G292600 chr7B 77.723 202 25 16 113 296 9699546 9699745 4.100000e-19 106.0
29 TraesCS3A01G292600 chr2B 81.890 127 16 4 150 271 631216153 631216277 1.910000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G292600 chr3A 523326127 523329130 3003 True 5548.000000 5548 100.000 1 3004 1 chr3A.!!$R2 3003
1 TraesCS3A01G292600 chr3A 457619920 457620844 924 True 1081.000000 1081 87.768 2076 3004 1 chr3A.!!$R1 928
2 TraesCS3A01G292600 chr2A 143374168 143375103 935 False 1262.000000 1262 90.986 2065 3004 1 chr2A.!!$F1 939
3 TraesCS3A01G292600 chr2A 207406984 207407908 924 False 1173.000000 1173 89.530 2072 3004 1 chr2A.!!$F2 932
4 TraesCS3A01G292600 chr7A 621822011 621822946 935 True 1249.000000 1249 90.764 2067 3004 1 chr7A.!!$R2 937
5 TraesCS3A01G292600 chr7A 254424239 254425171 932 False 1144.000000 1144 88.818 2066 3001 1 chr7A.!!$F1 935
6 TraesCS3A01G292600 chr7A 127454297 127455221 924 True 1120.000000 1120 88.556 2075 3004 1 chr7A.!!$R1 929
7 TraesCS3A01G292600 chr7A 625915577 625916489 912 False 1103.000000 1103 88.478 2084 3001 1 chr7A.!!$F2 917
8 TraesCS3A01G292600 chr1D 485643139 485644067 928 True 1212.000000 1212 90.181 2070 3004 1 chr1D.!!$R2 934
9 TraesCS3A01G292600 chr3D 402471621 402472994 1373 True 489.000000 1162 95.618 647 2066 4 chr3D.!!$R1 1419
10 TraesCS3A01G292600 chr4A 120715124 120716046 922 True 1160.000000 1160 89.316 2070 3002 1 chr4A.!!$R1 932
11 TraesCS3A01G292600 chr3B 527908943 527910755 1812 True 847.666667 1027 93.721 160 2066 3 chr3B.!!$R4 1906

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
548 552 0.106708 GGGCTATGCGGATTGACTGA 59.893 55.0 4.01 0.00 0.00 3.41 F
1437 1552 0.255033 TGCAGAGTAGACTCCCGCTA 59.745 55.0 17.70 6.53 43.88 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1440 1555 0.036164 ACTGCATGCTGGGTAAACGA 59.964 50.0 25.87 0.0 0.0 3.85 R
2281 2512 0.661020 CGGTTTGGATGGCGGTTATC 59.339 55.0 0.00 0.0 0.0 1.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.254951 CAAACTCGCCGCAATGCA 59.745 55.556 5.91 0.00 0.00 3.96
18 19 1.371512 CAAACTCGCCGCAATGCAA 60.372 52.632 5.91 0.00 0.00 4.08
19 20 0.733566 CAAACTCGCCGCAATGCAAT 60.734 50.000 5.91 0.00 0.00 3.56
20 21 0.456653 AAACTCGCCGCAATGCAATC 60.457 50.000 5.91 0.00 0.00 2.67
21 22 1.308069 AACTCGCCGCAATGCAATCT 61.308 50.000 5.91 0.00 0.00 2.40
22 23 1.308069 ACTCGCCGCAATGCAATCTT 61.308 50.000 5.91 0.00 0.00 2.40
23 24 0.657312 CTCGCCGCAATGCAATCTTA 59.343 50.000 5.91 0.00 0.00 2.10
24 25 0.376852 TCGCCGCAATGCAATCTTAC 59.623 50.000 5.91 0.00 0.00 2.34
25 26 0.378257 CGCCGCAATGCAATCTTACT 59.622 50.000 5.91 0.00 0.00 2.24
26 27 1.202177 CGCCGCAATGCAATCTTACTT 60.202 47.619 5.91 0.00 0.00 2.24
27 28 2.731968 CGCCGCAATGCAATCTTACTTT 60.732 45.455 5.91 0.00 0.00 2.66
28 29 2.599973 GCCGCAATGCAATCTTACTTTG 59.400 45.455 5.91 0.00 0.00 2.77
29 30 3.181397 CCGCAATGCAATCTTACTTTGG 58.819 45.455 5.91 0.00 0.00 3.28
30 31 3.367292 CCGCAATGCAATCTTACTTTGGT 60.367 43.478 5.91 0.00 0.00 3.67
31 32 3.853671 CGCAATGCAATCTTACTTTGGTC 59.146 43.478 5.91 0.00 0.00 4.02
32 33 4.379813 CGCAATGCAATCTTACTTTGGTCT 60.380 41.667 5.91 0.00 0.00 3.85
33 34 5.473039 GCAATGCAATCTTACTTTGGTCTT 58.527 37.500 0.00 0.00 0.00 3.01
34 35 5.346822 GCAATGCAATCTTACTTTGGTCTTG 59.653 40.000 0.00 0.00 0.00 3.02
35 36 5.649782 ATGCAATCTTACTTTGGTCTTGG 57.350 39.130 0.00 0.00 0.00 3.61
36 37 4.469657 TGCAATCTTACTTTGGTCTTGGT 58.530 39.130 0.00 0.00 0.00 3.67
37 38 4.278170 TGCAATCTTACTTTGGTCTTGGTG 59.722 41.667 0.00 0.00 0.00 4.17
38 39 4.321230 GCAATCTTACTTTGGTCTTGGTGG 60.321 45.833 0.00 0.00 0.00 4.61
39 40 4.993705 ATCTTACTTTGGTCTTGGTGGA 57.006 40.909 0.00 0.00 0.00 4.02
40 41 4.081322 TCTTACTTTGGTCTTGGTGGAC 57.919 45.455 0.00 0.00 35.66 4.02
49 50 3.528597 GTCTTGGTGGACCATAGTCTC 57.471 52.381 0.00 0.00 46.97 3.36
50 51 3.100671 GTCTTGGTGGACCATAGTCTCT 58.899 50.000 0.00 0.00 46.97 3.10
51 52 3.131400 GTCTTGGTGGACCATAGTCTCTC 59.869 52.174 0.00 0.00 46.97 3.20
52 53 2.160721 TGGTGGACCATAGTCTCTCC 57.839 55.000 0.00 0.00 42.01 3.71
53 54 1.361197 TGGTGGACCATAGTCTCTCCA 59.639 52.381 0.00 0.00 42.01 3.86
54 55 2.225522 TGGTGGACCATAGTCTCTCCAA 60.226 50.000 0.00 0.00 42.01 3.53
55 56 2.168728 GGTGGACCATAGTCTCTCCAAC 59.831 54.545 0.00 0.00 43.05 3.77
56 57 2.832129 GTGGACCATAGTCTCTCCAACA 59.168 50.000 0.00 0.00 43.05 3.33
57 58 2.832129 TGGACCATAGTCTCTCCAACAC 59.168 50.000 0.00 0.00 43.05 3.32
58 59 2.832129 GGACCATAGTCTCTCCAACACA 59.168 50.000 0.00 0.00 43.05 3.72
59 60 3.260884 GGACCATAGTCTCTCCAACACAA 59.739 47.826 0.00 0.00 43.05 3.33
60 61 4.080863 GGACCATAGTCTCTCCAACACAAT 60.081 45.833 0.00 0.00 43.05 2.71
61 62 5.128827 GGACCATAGTCTCTCCAACACAATA 59.871 44.000 0.00 0.00 43.05 1.90
62 63 6.183361 GGACCATAGTCTCTCCAACACAATAT 60.183 42.308 0.00 0.00 43.05 1.28
63 64 7.015292 GGACCATAGTCTCTCCAACACAATATA 59.985 40.741 0.00 0.00 43.05 0.86
64 65 8.497910 ACCATAGTCTCTCCAACACAATATAT 57.502 34.615 0.00 0.00 0.00 0.86
65 66 8.589338 ACCATAGTCTCTCCAACACAATATATC 58.411 37.037 0.00 0.00 0.00 1.63
66 67 8.588472 CCATAGTCTCTCCAACACAATATATCA 58.412 37.037 0.00 0.00 0.00 2.15
67 68 9.987272 CATAGTCTCTCCAACACAATATATCAA 57.013 33.333 0.00 0.00 0.00 2.57
70 71 8.153550 AGTCTCTCCAACACAATATATCAATCC 58.846 37.037 0.00 0.00 0.00 3.01
71 72 7.933577 GTCTCTCCAACACAATATATCAATCCA 59.066 37.037 0.00 0.00 0.00 3.41
72 73 8.663167 TCTCTCCAACACAATATATCAATCCAT 58.337 33.333 0.00 0.00 0.00 3.41
73 74 8.625786 TCTCCAACACAATATATCAATCCATG 57.374 34.615 0.00 0.00 0.00 3.66
74 75 8.219868 TCTCCAACACAATATATCAATCCATGT 58.780 33.333 0.00 0.00 0.00 3.21
75 76 8.394971 TCCAACACAATATATCAATCCATGTC 57.605 34.615 0.00 0.00 0.00 3.06
76 77 7.997803 TCCAACACAATATATCAATCCATGTCA 59.002 33.333 0.00 0.00 0.00 3.58
77 78 8.294577 CCAACACAATATATCAATCCATGTCAG 58.705 37.037 0.00 0.00 0.00 3.51
78 79 9.059260 CAACACAATATATCAATCCATGTCAGA 57.941 33.333 0.00 0.00 0.00 3.27
79 80 9.631257 AACACAATATATCAATCCATGTCAGAA 57.369 29.630 0.00 0.00 0.00 3.02
80 81 9.060347 ACACAATATATCAATCCATGTCAGAAC 57.940 33.333 0.00 0.00 0.00 3.01
81 82 9.281371 CACAATATATCAATCCATGTCAGAACT 57.719 33.333 0.00 0.00 0.00 3.01
82 83 9.857656 ACAATATATCAATCCATGTCAGAACTT 57.142 29.630 0.00 0.00 0.00 2.66
87 88 7.856145 ATCAATCCATGTCAGAACTTAGAAC 57.144 36.000 0.00 0.00 0.00 3.01
88 89 7.009179 TCAATCCATGTCAGAACTTAGAACT 57.991 36.000 0.00 0.00 0.00 3.01
89 90 6.875726 TCAATCCATGTCAGAACTTAGAACTG 59.124 38.462 0.00 0.00 0.00 3.16
90 91 5.808366 TCCATGTCAGAACTTAGAACTGT 57.192 39.130 0.00 0.00 33.93 3.55
91 92 6.911250 TCCATGTCAGAACTTAGAACTGTA 57.089 37.500 0.00 0.00 33.93 2.74
92 93 6.925211 TCCATGTCAGAACTTAGAACTGTAG 58.075 40.000 0.00 0.00 33.93 2.74
93 94 6.071334 TCCATGTCAGAACTTAGAACTGTAGG 60.071 42.308 0.00 0.00 33.93 3.18
94 95 6.295349 CCATGTCAGAACTTAGAACTGTAGGT 60.295 42.308 0.00 0.00 33.93 3.08
95 96 6.328641 TGTCAGAACTTAGAACTGTAGGTC 57.671 41.667 0.00 0.00 33.93 3.85
96 97 6.069331 TGTCAGAACTTAGAACTGTAGGTCT 58.931 40.000 4.66 4.66 36.42 3.85
97 98 7.229308 TGTCAGAACTTAGAACTGTAGGTCTA 58.771 38.462 2.58 2.58 33.81 2.59
98 99 7.722728 TGTCAGAACTTAGAACTGTAGGTCTAA 59.277 37.037 16.25 16.25 33.81 2.10
99 100 8.574737 GTCAGAACTTAGAACTGTAGGTCTAAA 58.425 37.037 17.42 2.63 33.81 1.85
100 101 8.794553 TCAGAACTTAGAACTGTAGGTCTAAAG 58.205 37.037 17.42 13.99 33.81 1.85
101 102 7.542824 CAGAACTTAGAACTGTAGGTCTAAAGC 59.457 40.741 17.42 10.95 33.81 3.51
102 103 7.452189 AGAACTTAGAACTGTAGGTCTAAAGCT 59.548 37.037 17.42 12.52 34.31 3.74
103 104 6.926313 ACTTAGAACTGTAGGTCTAAAGCTG 58.074 40.000 17.42 10.15 34.40 4.24
104 105 4.195225 AGAACTGTAGGTCTAAAGCTGC 57.805 45.455 0.00 0.00 36.31 5.25
105 106 3.578716 AGAACTGTAGGTCTAAAGCTGCA 59.421 43.478 1.02 0.00 42.28 4.41
108 109 3.319137 TGTAGGTCTAAAGCTGCAGTG 57.681 47.619 16.64 1.27 40.11 3.66
109 110 2.003301 GTAGGTCTAAAGCTGCAGTGC 58.997 52.381 16.64 8.58 35.88 4.40
110 111 0.397941 AGGTCTAAAGCTGCAGTGCA 59.602 50.000 18.58 18.58 36.92 4.57
111 112 1.004044 AGGTCTAAAGCTGCAGTGCAT 59.996 47.619 20.10 6.18 38.13 3.96
112 113 2.237143 AGGTCTAAAGCTGCAGTGCATA 59.763 45.455 20.10 7.14 38.13 3.14
113 114 3.118112 AGGTCTAAAGCTGCAGTGCATAT 60.118 43.478 20.10 7.37 38.13 1.78
114 115 4.101585 AGGTCTAAAGCTGCAGTGCATATA 59.898 41.667 20.10 8.48 38.13 0.86
115 116 4.999950 GGTCTAAAGCTGCAGTGCATATAT 59.000 41.667 20.10 8.46 38.13 0.86
116 117 5.106791 GGTCTAAAGCTGCAGTGCATATATG 60.107 44.000 20.10 7.66 38.13 1.78
117 118 5.698089 GTCTAAAGCTGCAGTGCATATATGA 59.302 40.000 20.10 10.13 38.13 2.15
118 119 6.370994 GTCTAAAGCTGCAGTGCATATATGAT 59.629 38.462 20.10 1.62 38.13 2.45
119 120 7.547019 GTCTAAAGCTGCAGTGCATATATGATA 59.453 37.037 20.10 5.26 38.13 2.15
120 121 6.492007 AAAGCTGCAGTGCATATATGATAC 57.508 37.500 20.10 13.40 38.13 2.24
121 122 5.417754 AGCTGCAGTGCATATATGATACT 57.582 39.130 20.10 15.28 38.13 2.12
122 123 6.535963 AGCTGCAGTGCATATATGATACTA 57.464 37.500 20.10 5.22 38.13 1.82
123 124 7.122138 AGCTGCAGTGCATATATGATACTAT 57.878 36.000 20.10 0.00 38.13 2.12
124 125 7.208777 AGCTGCAGTGCATATATGATACTATC 58.791 38.462 20.10 13.17 38.13 2.08
125 126 6.143598 GCTGCAGTGCATATATGATACTATCG 59.856 42.308 20.10 1.70 38.13 2.92
126 127 7.100458 TGCAGTGCATATATGATACTATCGT 57.900 36.000 15.37 0.00 31.71 3.73
127 128 8.220755 TGCAGTGCATATATGATACTATCGTA 57.779 34.615 15.37 5.34 32.61 3.43
128 129 8.850156 TGCAGTGCATATATGATACTATCGTAT 58.150 33.333 15.37 13.20 38.09 3.06
129 130 9.122613 GCAGTGCATATATGATACTATCGTATG 57.877 37.037 17.10 12.68 40.65 2.39
145 146 8.904834 ACTATCGTATGATACTCTTTTCACAGT 58.095 33.333 0.20 0.00 35.99 3.55
146 147 7.993821 ATCGTATGATACTCTTTTCACAGTG 57.006 36.000 0.66 0.00 31.44 3.66
147 148 5.805486 TCGTATGATACTCTTTTCACAGTGC 59.195 40.000 0.66 0.00 0.00 4.40
148 149 5.576774 CGTATGATACTCTTTTCACAGTGCA 59.423 40.000 0.66 0.00 0.00 4.57
149 150 6.256539 CGTATGATACTCTTTTCACAGTGCAT 59.743 38.462 0.66 0.00 0.00 3.96
150 151 7.435192 CGTATGATACTCTTTTCACAGTGCATA 59.565 37.037 0.66 0.00 0.00 3.14
151 152 9.265901 GTATGATACTCTTTTCACAGTGCATAT 57.734 33.333 0.00 0.00 30.55 1.78
152 153 8.743085 ATGATACTCTTTTCACAGTGCATATT 57.257 30.769 0.00 0.00 0.00 1.28
153 154 9.836864 ATGATACTCTTTTCACAGTGCATATTA 57.163 29.630 0.00 0.00 0.00 0.98
154 155 9.836864 TGATACTCTTTTCACAGTGCATATTAT 57.163 29.630 0.00 0.00 0.00 1.28
158 159 9.672673 ACTCTTTTCACAGTGCATATTATAAGT 57.327 29.630 0.00 0.00 0.00 2.24
273 274 9.119418 TCTCTTTTCTCATTTAATTGTGTGTCA 57.881 29.630 0.00 0.00 0.00 3.58
396 400 5.865085 AGCTTATAATCTTACCGGCAATCA 58.135 37.500 0.00 0.00 0.00 2.57
401 405 3.757745 ATCTTACCGGCAATCAAAACG 57.242 42.857 0.00 0.00 0.00 3.60
413 417 1.045911 TCAAAACGCAAAAGCCCCCT 61.046 50.000 0.00 0.00 0.00 4.79
433 437 4.462834 CCCTACCCAAACCTCTCAATTTTC 59.537 45.833 0.00 0.00 0.00 2.29
474 478 2.034532 CCACAGCCAGCCATGTCA 59.965 61.111 0.00 0.00 0.00 3.58
475 479 2.338015 CCACAGCCAGCCATGTCAC 61.338 63.158 0.00 0.00 0.00 3.67
480 484 3.660571 CCAGCCATGTCACCCCCA 61.661 66.667 0.00 0.00 0.00 4.96
488 492 1.635817 ATGTCACCCCCATCTTCGGG 61.636 60.000 0.00 0.00 46.94 5.14
548 552 0.106708 GGGCTATGCGGATTGACTGA 59.893 55.000 4.01 0.00 0.00 3.41
553 557 1.162181 ATGCGGATTGACTGATGCGG 61.162 55.000 1.29 0.00 40.60 5.69
567 571 4.083110 ACTGATGCGGAATTTTTCACTCAG 60.083 41.667 0.00 0.00 35.04 3.35
611 615 6.990349 TCTAGAGAAACAACCGAGTGAAAAAT 59.010 34.615 0.00 0.00 0.00 1.82
617 621 3.058501 ACAACCGAGTGAAAAATTAGGCG 60.059 43.478 0.00 0.00 0.00 5.52
618 622 2.081462 ACCGAGTGAAAAATTAGGCGG 58.919 47.619 0.00 0.00 42.85 6.13
619 623 2.289819 ACCGAGTGAAAAATTAGGCGGA 60.290 45.455 0.00 0.00 39.85 5.54
620 624 2.943033 CCGAGTGAAAAATTAGGCGGAT 59.057 45.455 0.00 0.00 39.85 4.18
621 625 3.002348 CCGAGTGAAAAATTAGGCGGATC 59.998 47.826 0.00 0.00 39.85 3.36
630 711 4.918810 AATTAGGCGGATCAAATCAACC 57.081 40.909 0.00 0.00 0.00 3.77
644 725 0.613260 TCAACCGAGGTAAGCAGCAT 59.387 50.000 0.00 0.00 0.00 3.79
655 736 6.571344 CGAGGTAAGCAGCATGAAGACTATAT 60.571 42.308 0.00 0.00 39.69 0.86
661 742 4.240888 CAGCATGAAGACTATATGGACGG 58.759 47.826 0.00 0.00 39.69 4.79
675 756 1.843851 TGGACGGCCTCTTTGGAATAT 59.156 47.619 9.82 0.00 38.35 1.28
726 816 1.031571 AGCTGAGAGCCTGAGACTCG 61.032 60.000 0.00 0.00 43.77 4.18
841 931 2.045340 CCTCCGCCCCATCGTTTT 60.045 61.111 0.00 0.00 0.00 2.43
842 932 2.112815 CCTCCGCCCCATCGTTTTC 61.113 63.158 0.00 0.00 0.00 2.29
843 933 2.045731 TCCGCCCCATCGTTTTCC 60.046 61.111 0.00 0.00 0.00 3.13
844 934 3.138128 CCGCCCCATCGTTTTCCC 61.138 66.667 0.00 0.00 0.00 3.97
845 935 2.045340 CGCCCCATCGTTTTCCCT 60.045 61.111 0.00 0.00 0.00 4.20
880 973 5.141182 ACTGAGACTCGTAACCATCCATAT 58.859 41.667 0.00 0.00 0.00 1.78
950 1043 4.219143 TCGTCGTAATCGTAGCATCAAT 57.781 40.909 0.00 0.00 38.33 2.57
976 1069 1.541379 TCATCCGTCCTCGAGTTTCA 58.459 50.000 12.31 0.00 39.71 2.69
1006 1099 0.958091 TTGTTCCGTTTCCATGGCTG 59.042 50.000 6.96 0.00 0.00 4.85
1225 1319 1.669760 CTCTTTACCGCCCGCAACA 60.670 57.895 0.00 0.00 0.00 3.33
1237 1331 0.525761 CCGCAACAACCAGGGTAATG 59.474 55.000 0.00 0.00 0.00 1.90
1402 1517 4.327982 TGATCAATGGTCAGTAGCTAGC 57.672 45.455 6.62 6.62 0.00 3.42
1408 1523 4.760530 ATGGTCAGTAGCTAGCATCAAA 57.239 40.909 18.83 0.00 0.00 2.69
1410 1525 5.102953 TGGTCAGTAGCTAGCATCAAAAT 57.897 39.130 18.83 0.00 0.00 1.82
1411 1526 4.877823 TGGTCAGTAGCTAGCATCAAAATG 59.122 41.667 18.83 6.35 35.87 2.32
1417 1532 6.423302 CAGTAGCTAGCATCAAAATGGAGTAG 59.577 42.308 18.83 0.00 33.19 2.57
1418 1533 5.365021 AGCTAGCATCAAAATGGAGTAGT 57.635 39.130 18.83 0.00 33.19 2.73
1419 1534 5.121811 AGCTAGCATCAAAATGGAGTAGTG 58.878 41.667 18.83 0.00 33.19 2.74
1420 1535 4.260948 GCTAGCATCAAAATGGAGTAGTGC 60.261 45.833 10.63 0.00 33.19 4.40
1421 1536 3.689347 AGCATCAAAATGGAGTAGTGCA 58.311 40.909 0.00 0.00 34.01 4.57
1422 1537 3.693085 AGCATCAAAATGGAGTAGTGCAG 59.307 43.478 0.00 0.00 34.01 4.41
1423 1538 3.691118 GCATCAAAATGGAGTAGTGCAGA 59.309 43.478 0.00 0.00 33.19 4.26
1424 1539 4.201891 GCATCAAAATGGAGTAGTGCAGAG 60.202 45.833 0.00 0.00 33.19 3.35
1425 1540 4.623932 TCAAAATGGAGTAGTGCAGAGT 57.376 40.909 0.00 0.00 0.00 3.24
1426 1541 5.738619 TCAAAATGGAGTAGTGCAGAGTA 57.261 39.130 0.00 0.00 0.00 2.59
1427 1542 5.724328 TCAAAATGGAGTAGTGCAGAGTAG 58.276 41.667 0.00 0.00 0.00 2.57
1428 1543 5.480422 TCAAAATGGAGTAGTGCAGAGTAGA 59.520 40.000 0.00 0.00 0.00 2.59
1429 1544 4.993029 AATGGAGTAGTGCAGAGTAGAC 57.007 45.455 0.00 0.00 0.00 2.59
1430 1545 3.722908 TGGAGTAGTGCAGAGTAGACT 57.277 47.619 0.00 0.00 0.00 3.24
1431 1546 3.611970 TGGAGTAGTGCAGAGTAGACTC 58.388 50.000 1.17 1.17 43.17 3.36
1432 1547 2.946990 GGAGTAGTGCAGAGTAGACTCC 59.053 54.545 6.05 10.91 44.44 3.85
1433 1548 2.946990 GAGTAGTGCAGAGTAGACTCCC 59.053 54.545 6.05 0.00 43.88 4.30
1434 1549 1.671845 GTAGTGCAGAGTAGACTCCCG 59.328 57.143 6.05 0.00 43.88 5.14
1435 1550 1.139947 GTGCAGAGTAGACTCCCGC 59.860 63.158 12.53 12.53 43.88 6.13
1436 1551 1.000771 TGCAGAGTAGACTCCCGCT 60.001 57.895 17.70 0.00 43.88 5.52
1437 1552 0.255033 TGCAGAGTAGACTCCCGCTA 59.745 55.000 17.70 6.53 43.88 4.26
1438 1553 1.133761 TGCAGAGTAGACTCCCGCTAT 60.134 52.381 17.70 0.00 43.88 2.97
1439 1554 1.957877 GCAGAGTAGACTCCCGCTATT 59.042 52.381 6.05 0.00 43.88 1.73
1440 1555 2.362717 GCAGAGTAGACTCCCGCTATTT 59.637 50.000 6.05 0.00 43.88 1.40
1441 1556 3.551250 GCAGAGTAGACTCCCGCTATTTC 60.551 52.174 6.05 0.00 43.88 2.17
1442 1557 2.879646 AGAGTAGACTCCCGCTATTTCG 59.120 50.000 6.05 0.00 43.88 3.46
1443 1558 2.617774 GAGTAGACTCCCGCTATTTCGT 59.382 50.000 0.00 0.00 37.02 3.85
1444 1559 3.022406 AGTAGACTCCCGCTATTTCGTT 58.978 45.455 0.00 0.00 0.00 3.85
1445 1560 3.446516 AGTAGACTCCCGCTATTTCGTTT 59.553 43.478 0.00 0.00 0.00 3.60
1446 1561 4.641989 AGTAGACTCCCGCTATTTCGTTTA 59.358 41.667 0.00 0.00 0.00 2.01
1447 1562 3.778618 AGACTCCCGCTATTTCGTTTAC 58.221 45.455 0.00 0.00 0.00 2.01
1448 1563 2.862536 GACTCCCGCTATTTCGTTTACC 59.137 50.000 0.00 0.00 0.00 2.85
1449 1564 2.207590 CTCCCGCTATTTCGTTTACCC 58.792 52.381 0.00 0.00 0.00 3.69
1450 1565 1.554160 TCCCGCTATTTCGTTTACCCA 59.446 47.619 0.00 0.00 0.00 4.51
1451 1566 1.937899 CCCGCTATTTCGTTTACCCAG 59.062 52.381 0.00 0.00 0.00 4.45
1452 1567 1.329599 CCGCTATTTCGTTTACCCAGC 59.670 52.381 0.00 0.00 0.00 4.85
1453 1568 2.004017 CGCTATTTCGTTTACCCAGCA 58.996 47.619 0.00 0.00 0.00 4.41
1454 1569 2.612212 CGCTATTTCGTTTACCCAGCAT 59.388 45.455 0.00 0.00 0.00 3.79
1455 1570 3.546020 CGCTATTTCGTTTACCCAGCATG 60.546 47.826 0.00 0.00 0.00 4.06
1456 1571 2.939460 ATTTCGTTTACCCAGCATGC 57.061 45.000 10.51 10.51 31.97 4.06
1457 1572 1.610363 TTTCGTTTACCCAGCATGCA 58.390 45.000 21.98 0.00 31.97 3.96
1458 1573 1.164411 TTCGTTTACCCAGCATGCAG 58.836 50.000 21.98 12.49 31.97 4.41
1459 1574 0.036164 TCGTTTACCCAGCATGCAGT 59.964 50.000 21.98 16.17 31.97 4.40
1460 1575 1.276705 TCGTTTACCCAGCATGCAGTA 59.723 47.619 21.98 15.11 31.97 2.74
1461 1576 1.665679 CGTTTACCCAGCATGCAGTAG 59.334 52.381 21.98 8.13 31.97 2.57
1462 1577 1.401905 GTTTACCCAGCATGCAGTAGC 59.598 52.381 21.98 10.83 42.57 3.58
1463 1578 0.911769 TTACCCAGCATGCAGTAGCT 59.088 50.000 21.98 5.37 42.94 3.32
1464 1579 1.788229 TACCCAGCATGCAGTAGCTA 58.212 50.000 21.98 0.00 39.50 3.32
1465 1580 0.179000 ACCCAGCATGCAGTAGCTAC 59.821 55.000 21.98 16.43 39.50 3.58
1466 1581 0.178767 CCCAGCATGCAGTAGCTACA 59.821 55.000 25.28 5.81 39.50 2.74
1467 1582 1.202734 CCCAGCATGCAGTAGCTACAT 60.203 52.381 25.28 8.03 39.50 2.29
1468 1583 2.141517 CCAGCATGCAGTAGCTACATC 58.858 52.381 25.28 15.93 39.50 3.06
1469 1584 1.791204 CAGCATGCAGTAGCTACATCG 59.209 52.381 25.28 14.01 39.50 3.84
1470 1585 0.510359 GCATGCAGTAGCTACATCGC 59.490 55.000 25.28 22.31 42.74 4.58
1471 1586 1.143305 CATGCAGTAGCTACATCGCC 58.857 55.000 25.28 9.03 42.74 5.54
1472 1587 1.043816 ATGCAGTAGCTACATCGCCT 58.956 50.000 25.28 14.15 42.74 5.52
1473 1588 0.824109 TGCAGTAGCTACATCGCCTT 59.176 50.000 25.28 0.00 42.74 4.35
1474 1589 1.202417 TGCAGTAGCTACATCGCCTTC 60.202 52.381 25.28 0.00 42.74 3.46
1475 1590 1.067821 GCAGTAGCTACATCGCCTTCT 59.932 52.381 25.28 0.00 37.91 2.85
1476 1591 2.860582 GCAGTAGCTACATCGCCTTCTC 60.861 54.545 25.28 0.00 37.91 2.87
1477 1592 2.621055 CAGTAGCTACATCGCCTTCTCT 59.379 50.000 25.28 0.00 0.00 3.10
1478 1593 2.621055 AGTAGCTACATCGCCTTCTCTG 59.379 50.000 25.28 0.00 0.00 3.35
1479 1594 1.769026 AGCTACATCGCCTTCTCTGA 58.231 50.000 0.00 0.00 0.00 3.27
1480 1595 1.680735 AGCTACATCGCCTTCTCTGAG 59.319 52.381 0.00 0.00 0.00 3.35
1481 1596 1.407258 GCTACATCGCCTTCTCTGAGT 59.593 52.381 4.32 0.00 0.00 3.41
1482 1597 2.542824 GCTACATCGCCTTCTCTGAGTC 60.543 54.545 4.32 0.00 0.00 3.36
1483 1598 0.820871 ACATCGCCTTCTCTGAGTCC 59.179 55.000 4.32 0.00 0.00 3.85
1484 1599 0.248825 CATCGCCTTCTCTGAGTCCG 60.249 60.000 4.32 4.04 0.00 4.79
1485 1600 0.681564 ATCGCCTTCTCTGAGTCCGT 60.682 55.000 4.32 0.00 0.00 4.69
1486 1601 0.894184 TCGCCTTCTCTGAGTCCGTT 60.894 55.000 4.32 0.00 0.00 4.44
1487 1602 0.038159 CGCCTTCTCTGAGTCCGTTT 60.038 55.000 4.32 0.00 0.00 3.60
1488 1603 1.201647 CGCCTTCTCTGAGTCCGTTTA 59.798 52.381 4.32 0.00 0.00 2.01
1489 1604 2.732597 CGCCTTCTCTGAGTCCGTTTAG 60.733 54.545 4.32 0.00 0.00 1.85
1490 1605 2.417515 GCCTTCTCTGAGTCCGTTTAGG 60.418 54.545 4.32 3.37 42.97 2.69
1506 1621 7.662604 CCGTTTAGGAACTACAATTGTTAGT 57.337 36.000 17.78 14.31 42.67 2.24
1507 1622 8.091385 CCGTTTAGGAACTACAATTGTTAGTT 57.909 34.615 17.78 20.84 42.67 2.24
1508 1623 8.225777 CCGTTTAGGAACTACAATTGTTAGTTC 58.774 37.037 29.41 29.41 42.67 3.01
1509 1624 8.767085 CGTTTAGGAACTACAATTGTTAGTTCA 58.233 33.333 32.99 23.21 46.82 3.18
1513 1628 8.918202 AGGAACTACAATTGTTAGTTCATTGA 57.082 30.769 32.99 13.22 46.82 2.57
1514 1629 9.520515 AGGAACTACAATTGTTAGTTCATTGAT 57.479 29.630 32.99 21.99 46.82 2.57
1515 1630 9.559958 GGAACTACAATTGTTAGTTCATTGATG 57.440 33.333 32.99 9.28 46.82 3.07
1516 1631 9.559958 GAACTACAATTGTTAGTTCATTGATGG 57.440 33.333 30.67 9.43 45.29 3.51
1517 1632 8.055279 ACTACAATTGTTAGTTCATTGATGGG 57.945 34.615 17.78 0.00 0.00 4.00
1518 1633 7.888021 ACTACAATTGTTAGTTCATTGATGGGA 59.112 33.333 17.78 0.00 0.00 4.37
1519 1634 7.722949 ACAATTGTTAGTTCATTGATGGGAT 57.277 32.000 4.92 0.00 0.00 3.85
1520 1635 7.775120 ACAATTGTTAGTTCATTGATGGGATC 58.225 34.615 4.92 0.00 0.00 3.36
1521 1636 7.396907 ACAATTGTTAGTTCATTGATGGGATCA 59.603 33.333 4.92 0.00 37.55 2.92
1522 1637 7.578310 ATTGTTAGTTCATTGATGGGATCAG 57.422 36.000 0.00 0.00 40.94 2.90
1523 1638 6.065976 TGTTAGTTCATTGATGGGATCAGT 57.934 37.500 0.00 0.00 40.94 3.41
1524 1639 7.194112 TGTTAGTTCATTGATGGGATCAGTA 57.806 36.000 0.00 0.00 40.94 2.74
1525 1640 7.047891 TGTTAGTTCATTGATGGGATCAGTAC 58.952 38.462 0.00 0.00 40.94 2.73
1526 1641 4.697514 AGTTCATTGATGGGATCAGTACG 58.302 43.478 0.00 0.00 40.94 3.67
1527 1642 4.162320 AGTTCATTGATGGGATCAGTACGT 59.838 41.667 0.00 0.00 40.94 3.57
1528 1643 4.058721 TCATTGATGGGATCAGTACGTG 57.941 45.455 0.00 0.00 40.94 4.49
1529 1644 2.309528 TTGATGGGATCAGTACGTGC 57.690 50.000 0.00 0.00 40.94 5.34
1530 1645 0.102300 TGATGGGATCAGTACGTGCG 59.898 55.000 0.00 0.00 33.59 5.34
1531 1646 0.102481 GATGGGATCAGTACGTGCGT 59.898 55.000 0.00 2.05 0.00 5.24
1532 1647 0.179111 ATGGGATCAGTACGTGCGTG 60.179 55.000 7.55 0.00 0.00 5.34
1533 1648 2.165301 GGGATCAGTACGTGCGTGC 61.165 63.158 7.55 6.08 0.00 5.34
1534 1649 1.445410 GGATCAGTACGTGCGTGCA 60.445 57.895 14.44 0.00 33.14 4.57
1535 1650 0.806102 GGATCAGTACGTGCGTGCAT 60.806 55.000 14.44 1.10 33.14 3.96
1536 1651 0.298707 GATCAGTACGTGCGTGCATG 59.701 55.000 12.31 12.31 38.78 4.06
1537 1652 1.695893 ATCAGTACGTGCGTGCATGC 61.696 55.000 24.20 24.20 36.48 4.06
1538 1653 2.048222 AGTACGTGCGTGCATGCT 60.048 55.556 29.83 13.96 36.48 3.79
1539 1654 1.075979 CAGTACGTGCGTGCATGCTA 61.076 55.000 29.83 14.76 36.48 3.49
1540 1655 0.179111 AGTACGTGCGTGCATGCTAT 60.179 50.000 29.83 17.73 36.48 2.97
1541 1656 1.066454 AGTACGTGCGTGCATGCTATA 59.934 47.619 29.83 16.78 36.48 1.31
1542 1657 1.189446 GTACGTGCGTGCATGCTATAC 59.811 52.381 29.83 22.86 36.48 1.47
1543 1658 0.179111 ACGTGCGTGCATGCTATACT 60.179 50.000 29.83 8.75 36.48 2.12
1544 1659 0.230515 CGTGCGTGCATGCTATACTG 59.769 55.000 29.83 13.09 35.36 2.74
1545 1660 0.041839 GTGCGTGCATGCTATACTGC 60.042 55.000 29.83 15.63 38.87 4.40
1546 1661 0.179076 TGCGTGCATGCTATACTGCT 60.179 50.000 29.83 0.00 39.16 4.24
1547 1662 0.234106 GCGTGCATGCTATACTGCTG 59.766 55.000 23.72 0.00 39.16 4.41
1548 1663 1.575244 CGTGCATGCTATACTGCTGT 58.425 50.000 20.33 0.66 39.16 4.40
1563 1678 2.623416 CTGCTGTGAGTATGGATACGGA 59.377 50.000 0.00 0.00 38.28 4.69
1571 1686 3.139850 AGTATGGATACGGACAGAGACG 58.860 50.000 0.00 0.00 38.28 4.18
1573 1688 0.678684 TGGATACGGACAGAGACGCA 60.679 55.000 0.00 0.00 42.51 5.24
1798 2029 6.586082 GGTTTTACATGGCAAACATCTAACAG 59.414 38.462 18.51 0.00 37.84 3.16
1811 2042 9.069078 CAAACATCTAACAGCAGAAATTACATG 57.931 33.333 0.00 0.00 0.00 3.21
1925 2156 0.469144 ACAAACGGGGGCTTGTTGAT 60.469 50.000 0.00 0.00 31.76 2.57
1999 2230 3.944015 GTGGAGTACGAGTATGTACAGGT 59.056 47.826 0.33 0.00 45.66 4.00
2000 2231 4.034975 GTGGAGTACGAGTATGTACAGGTC 59.965 50.000 0.33 0.00 45.66 3.85
2001 2232 4.080695 TGGAGTACGAGTATGTACAGGTCT 60.081 45.833 0.33 0.00 45.66 3.85
2002 2233 5.129320 TGGAGTACGAGTATGTACAGGTCTA 59.871 44.000 0.33 0.00 45.66 2.59
2003 2234 5.695816 GGAGTACGAGTATGTACAGGTCTAG 59.304 48.000 0.33 2.94 45.66 2.43
2004 2235 5.609423 AGTACGAGTATGTACAGGTCTAGG 58.391 45.833 0.33 0.00 45.66 3.02
2059 2290 5.796424 AATCAGAACAAGTGCTTTCCAAT 57.204 34.783 0.00 0.00 0.00 3.16
2097 2328 2.014033 TTTGAAAAGGGGTCGGGCCT 62.014 55.000 0.84 0.00 37.43 5.19
2181 2412 4.207165 CAAAGGTCTCCAGGTCTCAAAAA 58.793 43.478 0.00 0.00 0.00 1.94
2187 2418 7.241628 AGGTCTCCAGGTCTCAAAAATAAAAT 58.758 34.615 0.00 0.00 0.00 1.82
2257 2488 6.010219 ACCGGCAGGCAAAAATATAAGATAT 58.990 36.000 0.00 0.00 42.76 1.63
2258 2489 7.172342 ACCGGCAGGCAAAAATATAAGATATA 58.828 34.615 0.00 0.00 42.76 0.86
2314 2545 3.521937 TCCAAACCGGTTGAAGATATCCT 59.478 43.478 23.08 0.00 39.87 3.24
2328 2559 5.313280 AGATATCCTGAGTTACCGTCTCT 57.687 43.478 0.00 0.00 33.59 3.10
2329 2560 5.697067 AGATATCCTGAGTTACCGTCTCTT 58.303 41.667 0.00 0.00 33.59 2.85
2397 2628 4.275196 GTGAGTAGCGACCACATACAGATA 59.725 45.833 11.65 0.00 31.06 1.98
2420 2651 2.104281 GTGTAGTGGCCCGGAAGATAAT 59.896 50.000 0.73 0.00 0.00 1.28
2481 2713 1.138069 TCGTTTCTGCAGTTCCAGACA 59.862 47.619 14.67 0.00 41.28 3.41
2526 2758 2.294979 ACACGGATATGTCTCGCAGTA 58.705 47.619 0.00 0.00 0.00 2.74
2558 2790 0.179073 CCATCTAGCCACGTCCCAAG 60.179 60.000 0.00 0.00 0.00 3.61
2617 2849 0.036164 TAAGTGCACTGTCCGCCATT 59.964 50.000 22.49 3.34 0.00 3.16
2645 2878 1.542547 GCCAAGGGACAGTCGAGAAAA 60.543 52.381 0.00 0.00 0.00 2.29
2726 2959 4.187694 TGTGTTTTGCCAAATTGTCCTTC 58.812 39.130 0.00 0.00 0.00 3.46
2735 2968 5.941058 TGCCAAATTGTCCTTCGTTAGAATA 59.059 36.000 0.00 0.00 35.56 1.75
2737 2970 7.122055 TGCCAAATTGTCCTTCGTTAGAATAAT 59.878 33.333 0.00 0.00 35.56 1.28
2865 3100 5.805728 ACATGGATTTACCGAAAACTCTCT 58.194 37.500 0.00 0.00 42.61 3.10
2870 3105 7.046033 TGGATTTACCGAAAACTCTCTATTCC 58.954 38.462 0.00 0.00 42.61 3.01
2917 3152 2.509964 AGGTTGTTGAGAAAGGTGGACT 59.490 45.455 0.00 0.00 0.00 3.85
2962 3197 0.109132 GCCAAGCTTCCCAACGATTG 60.109 55.000 0.00 0.00 0.00 2.67
2974 3209 1.108776 AACGATTGCCCGCTAGAGTA 58.891 50.000 0.00 0.00 0.00 2.59
2977 3212 1.067212 CGATTGCCCGCTAGAGTACTT 59.933 52.381 0.00 0.00 0.00 2.24
2988 3223 6.406624 CCCGCTAGAGTACTTCTAAATTGGAA 60.407 42.308 0.00 0.00 37.93 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.137404 GATTGCATTGCGGCGAGTT 59.863 52.632 12.98 0.00 36.28 3.01
3 4 1.308069 AAGATTGCATTGCGGCGAGT 61.308 50.000 12.98 0.00 36.28 4.18
4 5 0.657312 TAAGATTGCATTGCGGCGAG 59.343 50.000 12.98 0.00 36.28 5.03
7 8 2.566952 AAGTAAGATTGCATTGCGGC 57.433 45.000 3.84 0.00 0.00 6.53
10 11 5.064441 AGACCAAAGTAAGATTGCATTGC 57.936 39.130 0.46 0.46 0.00 3.56
11 12 5.865552 CCAAGACCAAAGTAAGATTGCATTG 59.134 40.000 0.00 0.00 0.00 2.82
12 13 5.539955 ACCAAGACCAAAGTAAGATTGCATT 59.460 36.000 0.00 0.00 0.00 3.56
13 14 5.047802 CACCAAGACCAAAGTAAGATTGCAT 60.048 40.000 0.00 0.00 0.00 3.96
15 16 4.321230 CCACCAAGACCAAAGTAAGATTGC 60.321 45.833 0.00 0.00 0.00 3.56
16 17 5.048713 GTCCACCAAGACCAAAGTAAGATTG 60.049 44.000 0.00 0.00 0.00 2.67
17 18 5.070685 GTCCACCAAGACCAAAGTAAGATT 58.929 41.667 0.00 0.00 0.00 2.40
18 19 4.652822 GTCCACCAAGACCAAAGTAAGAT 58.347 43.478 0.00 0.00 0.00 2.40
19 20 4.081322 GTCCACCAAGACCAAAGTAAGA 57.919 45.455 0.00 0.00 0.00 2.10
34 35 2.160721 TGGAGAGACTATGGTCCACC 57.839 55.000 5.47 7.64 43.05 4.61
35 36 2.832129 TGTTGGAGAGACTATGGTCCAC 59.168 50.000 5.47 0.92 43.05 4.02
36 37 2.832129 GTGTTGGAGAGACTATGGTCCA 59.168 50.000 5.47 0.00 43.05 4.02
37 38 2.832129 TGTGTTGGAGAGACTATGGTCC 59.168 50.000 5.47 0.00 43.05 4.46
38 39 4.537135 TTGTGTTGGAGAGACTATGGTC 57.463 45.455 0.00 0.00 42.41 4.02
39 40 6.814954 ATATTGTGTTGGAGAGACTATGGT 57.185 37.500 0.00 0.00 0.00 3.55
40 41 8.588472 TGATATATTGTGTTGGAGAGACTATGG 58.412 37.037 0.00 0.00 0.00 2.74
41 42 9.987272 TTGATATATTGTGTTGGAGAGACTATG 57.013 33.333 0.00 0.00 0.00 2.23
44 45 8.153550 GGATTGATATATTGTGTTGGAGAGACT 58.846 37.037 0.00 0.00 0.00 3.24
45 46 7.933577 TGGATTGATATATTGTGTTGGAGAGAC 59.066 37.037 0.00 0.00 0.00 3.36
46 47 8.033178 TGGATTGATATATTGTGTTGGAGAGA 57.967 34.615 0.00 0.00 0.00 3.10
47 48 8.727910 CATGGATTGATATATTGTGTTGGAGAG 58.272 37.037 0.00 0.00 0.00 3.20
48 49 8.219868 ACATGGATTGATATATTGTGTTGGAGA 58.780 33.333 0.00 0.00 0.00 3.71
49 50 8.400184 ACATGGATTGATATATTGTGTTGGAG 57.600 34.615 0.00 0.00 0.00 3.86
50 51 7.997803 TGACATGGATTGATATATTGTGTTGGA 59.002 33.333 0.00 0.00 0.00 3.53
51 52 8.168790 TGACATGGATTGATATATTGTGTTGG 57.831 34.615 0.00 0.00 0.00 3.77
52 53 9.059260 TCTGACATGGATTGATATATTGTGTTG 57.941 33.333 0.00 0.00 0.00 3.33
53 54 9.631257 TTCTGACATGGATTGATATATTGTGTT 57.369 29.630 0.00 0.00 0.00 3.32
54 55 9.060347 GTTCTGACATGGATTGATATATTGTGT 57.940 33.333 0.00 0.00 0.00 3.72
55 56 9.281371 AGTTCTGACATGGATTGATATATTGTG 57.719 33.333 0.00 0.00 0.00 3.33
56 57 9.857656 AAGTTCTGACATGGATTGATATATTGT 57.142 29.630 0.00 0.00 0.00 2.71
61 62 9.553064 GTTCTAAGTTCTGACATGGATTGATAT 57.447 33.333 0.00 0.00 0.00 1.63
62 63 8.762645 AGTTCTAAGTTCTGACATGGATTGATA 58.237 33.333 0.00 0.00 0.00 2.15
63 64 7.551974 CAGTTCTAAGTTCTGACATGGATTGAT 59.448 37.037 0.00 0.00 0.00 2.57
64 65 6.875726 CAGTTCTAAGTTCTGACATGGATTGA 59.124 38.462 0.00 0.00 0.00 2.57
65 66 6.652481 ACAGTTCTAAGTTCTGACATGGATTG 59.348 38.462 0.00 0.00 33.93 2.67
66 67 6.773638 ACAGTTCTAAGTTCTGACATGGATT 58.226 36.000 0.00 0.00 33.93 3.01
67 68 6.365970 ACAGTTCTAAGTTCTGACATGGAT 57.634 37.500 0.00 0.00 33.93 3.41
68 69 5.808366 ACAGTTCTAAGTTCTGACATGGA 57.192 39.130 0.00 0.00 33.93 3.41
69 70 6.102663 CCTACAGTTCTAAGTTCTGACATGG 58.897 44.000 0.00 0.00 33.93 3.66
70 71 6.692486 ACCTACAGTTCTAAGTTCTGACATG 58.308 40.000 0.00 0.00 33.93 3.21
71 72 6.722129 AGACCTACAGTTCTAAGTTCTGACAT 59.278 38.462 0.00 0.00 33.93 3.06
72 73 6.069331 AGACCTACAGTTCTAAGTTCTGACA 58.931 40.000 0.00 0.00 33.93 3.58
73 74 6.578163 AGACCTACAGTTCTAAGTTCTGAC 57.422 41.667 0.00 0.00 33.93 3.51
74 75 8.701908 TTTAGACCTACAGTTCTAAGTTCTGA 57.298 34.615 0.00 0.00 33.93 3.27
75 76 7.542824 GCTTTAGACCTACAGTTCTAAGTTCTG 59.457 40.741 0.00 0.00 35.60 3.02
76 77 7.452189 AGCTTTAGACCTACAGTTCTAAGTTCT 59.548 37.037 0.00 0.00 0.00 3.01
77 78 7.542824 CAGCTTTAGACCTACAGTTCTAAGTTC 59.457 40.741 0.00 0.00 0.00 3.01
78 79 7.379750 CAGCTTTAGACCTACAGTTCTAAGTT 58.620 38.462 0.00 0.00 0.00 2.66
79 80 6.572703 GCAGCTTTAGACCTACAGTTCTAAGT 60.573 42.308 0.00 0.00 0.00 2.24
80 81 5.808030 GCAGCTTTAGACCTACAGTTCTAAG 59.192 44.000 0.00 0.00 0.00 2.18
81 82 5.245301 TGCAGCTTTAGACCTACAGTTCTAA 59.755 40.000 0.00 0.00 0.00 2.10
82 83 4.770531 TGCAGCTTTAGACCTACAGTTCTA 59.229 41.667 0.00 0.00 0.00 2.10
83 84 3.578716 TGCAGCTTTAGACCTACAGTTCT 59.421 43.478 0.00 0.00 0.00 3.01
84 85 3.926616 TGCAGCTTTAGACCTACAGTTC 58.073 45.455 0.00 0.00 0.00 3.01
85 86 3.325135 ACTGCAGCTTTAGACCTACAGTT 59.675 43.478 15.27 0.00 33.10 3.16
86 87 2.900546 ACTGCAGCTTTAGACCTACAGT 59.099 45.455 15.27 0.00 32.31 3.55
87 88 3.257393 CACTGCAGCTTTAGACCTACAG 58.743 50.000 15.27 0.00 0.00 2.74
88 89 2.612972 GCACTGCAGCTTTAGACCTACA 60.613 50.000 15.27 0.00 0.00 2.74
89 90 2.003301 GCACTGCAGCTTTAGACCTAC 58.997 52.381 15.27 0.00 0.00 3.18
90 91 1.623311 TGCACTGCAGCTTTAGACCTA 59.377 47.619 15.27 0.00 33.32 3.08
91 92 0.397941 TGCACTGCAGCTTTAGACCT 59.602 50.000 15.27 0.00 33.32 3.85
92 93 1.457346 ATGCACTGCAGCTTTAGACC 58.543 50.000 15.27 0.00 43.65 3.85
93 94 5.698089 TCATATATGCACTGCAGCTTTAGAC 59.302 40.000 15.27 0.00 43.65 2.59
94 95 5.857268 TCATATATGCACTGCAGCTTTAGA 58.143 37.500 15.27 0.00 43.65 2.10
95 96 6.738832 ATCATATATGCACTGCAGCTTTAG 57.261 37.500 15.27 0.00 43.65 1.85
96 97 7.389232 AGTATCATATATGCACTGCAGCTTTA 58.611 34.615 15.27 0.96 43.65 1.85
97 98 6.236409 AGTATCATATATGCACTGCAGCTTT 58.764 36.000 15.27 0.00 43.65 3.51
98 99 5.802465 AGTATCATATATGCACTGCAGCTT 58.198 37.500 15.27 2.33 43.65 3.74
99 100 5.417754 AGTATCATATATGCACTGCAGCT 57.582 39.130 15.27 0.00 43.65 4.24
100 101 6.143598 CGATAGTATCATATATGCACTGCAGC 59.856 42.308 15.27 1.39 43.65 5.25
101 102 7.620397 CGATAGTATCATATATGCACTGCAG 57.380 40.000 21.13 13.48 43.65 4.41
120 121 9.175060 CACTGTGAAAAGAGTATCATACGATAG 57.825 37.037 0.32 0.00 37.82 2.08
121 122 7.648112 GCACTGTGAAAAGAGTATCATACGATA 59.352 37.037 12.86 0.00 37.82 2.92
122 123 6.477033 GCACTGTGAAAAGAGTATCATACGAT 59.523 38.462 12.86 0.00 37.82 3.73
123 124 5.805486 GCACTGTGAAAAGAGTATCATACGA 59.195 40.000 12.86 0.00 37.82 3.43
124 125 5.576774 TGCACTGTGAAAAGAGTATCATACG 59.423 40.000 12.86 0.00 37.82 3.06
125 126 6.968131 TGCACTGTGAAAAGAGTATCATAC 57.032 37.500 12.86 0.00 37.82 2.39
126 127 9.836864 AATATGCACTGTGAAAAGAGTATCATA 57.163 29.630 12.86 6.01 37.82 2.15
127 128 8.743085 AATATGCACTGTGAAAAGAGTATCAT 57.257 30.769 12.86 3.95 37.82 2.45
128 129 9.836864 ATAATATGCACTGTGAAAAGAGTATCA 57.163 29.630 12.86 0.00 37.82 2.15
132 133 9.672673 ACTTATAATATGCACTGTGAAAAGAGT 57.327 29.630 12.86 0.60 0.00 3.24
187 188 9.490663 GTTGTCTTATATTGTGTCATGCTTAAC 57.509 33.333 0.00 0.00 0.00 2.01
189 190 8.785329 TGTTGTCTTATATTGTGTCATGCTTA 57.215 30.769 0.00 0.00 0.00 3.09
248 249 9.903682 ATGACACACAATTAAATGAGAAAAGAG 57.096 29.630 0.00 0.00 0.00 2.85
327 331 9.650539 GAGTATCAGAAGTGTATCATGCATATT 57.349 33.333 0.00 0.00 33.17 1.28
345 349 1.869767 GCCCGCAAATCAGAGTATCAG 59.130 52.381 0.00 0.00 37.82 2.90
401 405 0.834261 TTTGGGTAGGGGGCTTTTGC 60.834 55.000 0.00 0.00 46.64 3.68
413 417 4.830600 GTGGAAAATTGAGAGGTTTGGGTA 59.169 41.667 0.00 0.00 0.00 3.69
433 437 3.846506 TTAACGGGGGCGTTGGTGG 62.847 63.158 0.00 0.00 33.80 4.61
470 474 2.297895 CCCGAAGATGGGGGTGACA 61.298 63.158 0.00 0.00 46.17 3.58
480 484 1.383248 CCAGGACCTCCCCGAAGAT 60.383 63.158 0.00 0.00 36.42 2.40
510 514 1.112315 CCGAGGATGAGTGAGGGAGG 61.112 65.000 0.00 0.00 0.00 4.30
516 520 0.188587 ATAGCCCCGAGGATGAGTGA 59.811 55.000 0.00 0.00 30.98 3.41
548 552 2.821969 AGCTGAGTGAAAAATTCCGCAT 59.178 40.909 0.00 0.00 28.75 4.73
553 557 3.930634 AGGCAGCTGAGTGAAAAATTC 57.069 42.857 20.43 0.00 0.00 2.17
582 586 4.859798 CACTCGGTTGTTTCTCTAGATGTC 59.140 45.833 0.00 0.00 0.00 3.06
590 594 6.856426 CCTAATTTTTCACTCGGTTGTTTCTC 59.144 38.462 0.00 0.00 0.00 2.87
611 615 2.093394 TCGGTTGATTTGATCCGCCTAA 60.093 45.455 0.00 0.00 42.28 2.69
617 621 3.312697 GCTTACCTCGGTTGATTTGATCC 59.687 47.826 0.00 0.00 0.00 3.36
618 622 3.938963 TGCTTACCTCGGTTGATTTGATC 59.061 43.478 0.00 0.00 0.00 2.92
619 623 3.941483 CTGCTTACCTCGGTTGATTTGAT 59.059 43.478 0.00 0.00 0.00 2.57
620 624 3.334691 CTGCTTACCTCGGTTGATTTGA 58.665 45.455 0.00 0.00 0.00 2.69
621 625 2.159517 GCTGCTTACCTCGGTTGATTTG 60.160 50.000 0.00 0.00 0.00 2.32
630 711 1.929836 GTCTTCATGCTGCTTACCTCG 59.070 52.381 0.00 0.00 0.00 4.63
644 725 2.891580 GAGGCCGTCCATATAGTCTTCA 59.108 50.000 0.00 0.00 33.74 3.02
655 736 1.281419 TATTCCAAAGAGGCCGTCCA 58.719 50.000 0.00 0.00 37.29 4.02
661 742 4.526970 TCTTGGTCATATTCCAAAGAGGC 58.473 43.478 9.52 0.00 43.16 4.70
675 756 2.487762 GGACGATTTTGCATCTTGGTCA 59.512 45.455 9.11 0.00 0.00 4.02
841 931 2.360852 GTCCGTGGTCGAGAGGGA 60.361 66.667 2.37 2.37 39.71 4.20
842 932 2.361357 AGTCCGTGGTCGAGAGGG 60.361 66.667 0.00 0.00 39.71 4.30
843 933 1.649390 CTCAGTCCGTGGTCGAGAGG 61.649 65.000 0.00 0.00 39.71 3.69
844 934 0.673956 TCTCAGTCCGTGGTCGAGAG 60.674 60.000 0.00 0.00 39.71 3.20
845 935 0.954449 GTCTCAGTCCGTGGTCGAGA 60.954 60.000 0.00 0.00 39.71 4.04
880 973 3.000041 AGACGCGATGCTGTGAATTTAA 59.000 40.909 15.93 0.00 0.00 1.52
950 1043 3.952323 ACTCGAGGACGGATGATAAAGAA 59.048 43.478 18.41 0.00 40.21 2.52
976 1069 4.359706 GAAACGGAACAAGCAAACAGATT 58.640 39.130 0.00 0.00 0.00 2.40
1188 1282 0.394192 GGATGCATCCCGTCTCATCA 59.606 55.000 32.15 0.00 41.20 3.07
1225 1319 0.261696 GGGGATGCATTACCCTGGTT 59.738 55.000 25.35 0.00 44.97 3.67
1237 1331 6.775594 AATTACTACAGAAAAAGGGGATGC 57.224 37.500 0.00 0.00 0.00 3.91
1402 1517 4.940046 ACTCTGCACTACTCCATTTTGATG 59.060 41.667 0.00 0.00 0.00 3.07
1408 1523 4.605183 AGTCTACTCTGCACTACTCCATT 58.395 43.478 0.00 0.00 0.00 3.16
1410 1525 3.611970 GAGTCTACTCTGCACTACTCCA 58.388 50.000 2.81 0.00 39.81 3.86
1411 1526 2.946990 GGAGTCTACTCTGCACTACTCC 59.053 54.545 9.84 0.00 44.36 3.85
1417 1532 1.139947 GCGGGAGTCTACTCTGCAC 59.860 63.158 17.24 0.94 42.48 4.57
1418 1533 0.255033 TAGCGGGAGTCTACTCTGCA 59.745 55.000 21.38 10.69 42.49 4.41
1419 1534 1.611519 ATAGCGGGAGTCTACTCTGC 58.388 55.000 15.46 15.46 42.48 4.26
1420 1535 3.304123 CGAAATAGCGGGAGTCTACTCTG 60.304 52.174 9.84 4.68 42.48 3.35
1421 1536 2.879646 CGAAATAGCGGGAGTCTACTCT 59.120 50.000 9.84 0.00 42.48 3.24
1422 1537 2.617774 ACGAAATAGCGGGAGTCTACTC 59.382 50.000 1.30 1.30 37.19 2.59
1423 1538 2.652590 ACGAAATAGCGGGAGTCTACT 58.347 47.619 0.00 0.00 35.12 2.57
1424 1539 3.433513 AACGAAATAGCGGGAGTCTAC 57.566 47.619 0.00 0.00 35.12 2.59
1425 1540 4.202050 GGTAAACGAAATAGCGGGAGTCTA 60.202 45.833 0.00 0.00 35.12 2.59
1426 1541 3.429960 GGTAAACGAAATAGCGGGAGTCT 60.430 47.826 0.00 0.00 35.12 3.24
1427 1542 2.862536 GGTAAACGAAATAGCGGGAGTC 59.137 50.000 0.00 0.00 35.12 3.36
1428 1543 2.419159 GGGTAAACGAAATAGCGGGAGT 60.419 50.000 0.00 0.00 35.12 3.85
1429 1544 2.207590 GGGTAAACGAAATAGCGGGAG 58.792 52.381 0.00 0.00 35.12 4.30
1430 1545 1.554160 TGGGTAAACGAAATAGCGGGA 59.446 47.619 0.00 0.00 35.12 5.14
1431 1546 1.937899 CTGGGTAAACGAAATAGCGGG 59.062 52.381 0.00 0.00 35.12 6.13
1432 1547 1.329599 GCTGGGTAAACGAAATAGCGG 59.670 52.381 0.00 0.00 35.12 5.52
1433 1548 2.004017 TGCTGGGTAAACGAAATAGCG 58.996 47.619 0.00 0.00 32.66 4.26
1434 1549 3.792124 GCATGCTGGGTAAACGAAATAGC 60.792 47.826 11.37 0.00 0.00 2.97
1435 1550 3.376859 TGCATGCTGGGTAAACGAAATAG 59.623 43.478 20.33 0.00 0.00 1.73
1436 1551 3.348119 TGCATGCTGGGTAAACGAAATA 58.652 40.909 20.33 0.00 0.00 1.40
1437 1552 2.164219 CTGCATGCTGGGTAAACGAAAT 59.836 45.455 20.33 0.00 0.00 2.17
1438 1553 1.539388 CTGCATGCTGGGTAAACGAAA 59.461 47.619 20.33 0.00 0.00 3.46
1439 1554 1.164411 CTGCATGCTGGGTAAACGAA 58.836 50.000 20.33 0.00 0.00 3.85
1440 1555 0.036164 ACTGCATGCTGGGTAAACGA 59.964 50.000 25.87 0.00 0.00 3.85
1441 1556 1.665679 CTACTGCATGCTGGGTAAACG 59.334 52.381 25.87 8.72 0.00 3.60
1442 1557 1.401905 GCTACTGCATGCTGGGTAAAC 59.598 52.381 25.87 13.34 39.41 2.01
1443 1558 1.281867 AGCTACTGCATGCTGGGTAAA 59.718 47.619 25.87 0.39 42.74 2.01
1444 1559 0.911769 AGCTACTGCATGCTGGGTAA 59.088 50.000 25.87 9.56 42.74 2.85
1445 1560 1.412710 GTAGCTACTGCATGCTGGGTA 59.587 52.381 25.87 19.42 42.74 3.69
1446 1561 0.179000 GTAGCTACTGCATGCTGGGT 59.821 55.000 25.87 19.35 42.74 4.51
1447 1562 0.178767 TGTAGCTACTGCATGCTGGG 59.821 55.000 25.87 18.75 42.74 4.45
1448 1563 2.141517 GATGTAGCTACTGCATGCTGG 58.858 52.381 25.87 17.38 36.96 4.85
1449 1564 1.791204 CGATGTAGCTACTGCATGCTG 59.209 52.381 23.84 21.60 36.96 4.41
1450 1565 1.871408 GCGATGTAGCTACTGCATGCT 60.871 52.381 23.84 12.45 36.96 3.79
1451 1566 0.510359 GCGATGTAGCTACTGCATGC 59.490 55.000 23.84 11.82 36.96 4.06
1452 1567 1.143305 GGCGATGTAGCTACTGCATG 58.857 55.000 26.24 14.43 36.96 4.06
1453 1568 1.043816 AGGCGATGTAGCTACTGCAT 58.956 50.000 26.24 20.89 39.36 3.96
1454 1569 0.824109 AAGGCGATGTAGCTACTGCA 59.176 50.000 26.24 10.75 42.74 4.41
1455 1570 1.067821 AGAAGGCGATGTAGCTACTGC 59.932 52.381 23.84 22.08 37.29 4.40
1456 1571 2.621055 AGAGAAGGCGATGTAGCTACTG 59.379 50.000 23.84 14.61 37.29 2.74
1457 1572 2.621055 CAGAGAAGGCGATGTAGCTACT 59.379 50.000 23.84 10.16 37.29 2.57
1458 1573 2.619177 TCAGAGAAGGCGATGTAGCTAC 59.381 50.000 17.30 17.30 37.29 3.58
1459 1574 2.881513 CTCAGAGAAGGCGATGTAGCTA 59.118 50.000 0.00 0.00 37.29 3.32
1460 1575 1.680735 CTCAGAGAAGGCGATGTAGCT 59.319 52.381 0.00 0.00 37.29 3.32
1461 1576 1.407258 ACTCAGAGAAGGCGATGTAGC 59.593 52.381 3.79 0.00 0.00 3.58
1462 1577 2.034053 GGACTCAGAGAAGGCGATGTAG 59.966 54.545 3.79 0.00 0.00 2.74
1463 1578 2.025155 GGACTCAGAGAAGGCGATGTA 58.975 52.381 3.79 0.00 0.00 2.29
1464 1579 0.820871 GGACTCAGAGAAGGCGATGT 59.179 55.000 3.79 0.00 0.00 3.06
1465 1580 0.248825 CGGACTCAGAGAAGGCGATG 60.249 60.000 3.79 0.00 0.00 3.84
1466 1581 0.681564 ACGGACTCAGAGAAGGCGAT 60.682 55.000 3.79 0.00 0.00 4.58
1467 1582 0.894184 AACGGACTCAGAGAAGGCGA 60.894 55.000 3.79 0.00 0.00 5.54
1468 1583 0.038159 AAACGGACTCAGAGAAGGCG 60.038 55.000 3.79 0.00 0.00 5.52
1469 1584 2.417515 CCTAAACGGACTCAGAGAAGGC 60.418 54.545 3.79 0.00 33.16 4.35
1470 1585 3.090037 TCCTAAACGGACTCAGAGAAGG 58.910 50.000 3.79 0.00 36.69 3.46
1471 1586 4.218852 AGTTCCTAAACGGACTCAGAGAAG 59.781 45.833 3.79 0.00 42.97 2.85
1472 1587 4.150359 AGTTCCTAAACGGACTCAGAGAA 58.850 43.478 3.79 0.00 42.97 2.87
1473 1588 3.764218 AGTTCCTAAACGGACTCAGAGA 58.236 45.455 3.79 0.00 42.97 3.10
1474 1589 4.458295 TGTAGTTCCTAAACGGACTCAGAG 59.542 45.833 0.00 0.00 42.97 3.35
1475 1590 4.401022 TGTAGTTCCTAAACGGACTCAGA 58.599 43.478 0.00 0.00 42.97 3.27
1476 1591 4.778534 TGTAGTTCCTAAACGGACTCAG 57.221 45.455 0.00 0.00 42.97 3.35
1477 1592 5.733620 ATTGTAGTTCCTAAACGGACTCA 57.266 39.130 0.00 0.00 42.97 3.41
1478 1593 5.930569 ACAATTGTAGTTCCTAAACGGACTC 59.069 40.000 9.97 0.00 42.97 3.36
1479 1594 5.861727 ACAATTGTAGTTCCTAAACGGACT 58.138 37.500 9.97 0.00 42.97 3.85
1480 1595 6.549912 AACAATTGTAGTTCCTAAACGGAC 57.450 37.500 12.39 0.00 42.97 4.79
1481 1596 7.444299 ACTAACAATTGTAGTTCCTAAACGGA 58.556 34.615 12.39 0.00 40.48 4.69
1482 1597 7.662604 ACTAACAATTGTAGTTCCTAAACGG 57.337 36.000 12.39 0.00 40.48 4.44
1483 1598 8.767085 TGAACTAACAATTGTAGTTCCTAAACG 58.233 33.333 31.36 10.91 45.34 3.60
1488 1603 8.918202 TCAATGAACTAACAATTGTAGTTCCT 57.082 30.769 31.36 25.91 45.34 3.36
1489 1604 9.559958 CATCAATGAACTAACAATTGTAGTTCC 57.440 33.333 31.36 22.82 45.34 3.62
1490 1605 9.559958 CCATCAATGAACTAACAATTGTAGTTC 57.440 33.333 29.92 29.92 45.83 3.01
1491 1606 8.522830 CCCATCAATGAACTAACAATTGTAGTT 58.477 33.333 22.43 22.43 36.82 2.24
1492 1607 7.888021 TCCCATCAATGAACTAACAATTGTAGT 59.112 33.333 12.39 12.29 0.00 2.73
1493 1608 8.279970 TCCCATCAATGAACTAACAATTGTAG 57.720 34.615 12.39 11.69 0.00 2.74
1494 1609 8.821686 ATCCCATCAATGAACTAACAATTGTA 57.178 30.769 12.39 0.00 0.00 2.41
1495 1610 7.396907 TGATCCCATCAATGAACTAACAATTGT 59.603 33.333 4.92 4.92 36.11 2.71
1496 1611 7.774134 TGATCCCATCAATGAACTAACAATTG 58.226 34.615 3.24 3.24 36.11 2.32
1497 1612 7.616935 ACTGATCCCATCAATGAACTAACAATT 59.383 33.333 0.00 0.00 39.11 2.32
1498 1613 7.121382 ACTGATCCCATCAATGAACTAACAAT 58.879 34.615 0.00 0.00 39.11 2.71
1499 1614 6.484288 ACTGATCCCATCAATGAACTAACAA 58.516 36.000 0.00 0.00 39.11 2.83
1500 1615 6.065976 ACTGATCCCATCAATGAACTAACA 57.934 37.500 0.00 0.00 39.11 2.41
1501 1616 6.201044 CGTACTGATCCCATCAATGAACTAAC 59.799 42.308 0.00 0.00 39.11 2.34
1502 1617 6.127168 ACGTACTGATCCCATCAATGAACTAA 60.127 38.462 0.00 0.00 39.11 2.24
1503 1618 5.362717 ACGTACTGATCCCATCAATGAACTA 59.637 40.000 0.00 0.00 39.11 2.24
1504 1619 4.162320 ACGTACTGATCCCATCAATGAACT 59.838 41.667 0.00 0.00 39.11 3.01
1505 1620 4.271049 CACGTACTGATCCCATCAATGAAC 59.729 45.833 0.00 0.00 39.11 3.18
1506 1621 4.441792 CACGTACTGATCCCATCAATGAA 58.558 43.478 0.00 0.00 39.11 2.57
1507 1622 3.741075 GCACGTACTGATCCCATCAATGA 60.741 47.826 0.00 0.00 39.11 2.57
1508 1623 2.545526 GCACGTACTGATCCCATCAATG 59.454 50.000 0.00 0.00 39.11 2.82
1509 1624 2.803133 CGCACGTACTGATCCCATCAAT 60.803 50.000 0.00 0.00 39.11 2.57
1510 1625 1.470805 CGCACGTACTGATCCCATCAA 60.471 52.381 0.00 0.00 39.11 2.57
1511 1626 0.102300 CGCACGTACTGATCCCATCA 59.898 55.000 0.00 0.00 37.76 3.07
1512 1627 0.102481 ACGCACGTACTGATCCCATC 59.898 55.000 0.00 0.00 0.00 3.51
1513 1628 0.179111 CACGCACGTACTGATCCCAT 60.179 55.000 0.00 0.00 0.00 4.00
1514 1629 1.214325 CACGCACGTACTGATCCCA 59.786 57.895 0.00 0.00 0.00 4.37
1515 1630 2.165301 GCACGCACGTACTGATCCC 61.165 63.158 0.00 0.00 0.00 3.85
1516 1631 0.806102 ATGCACGCACGTACTGATCC 60.806 55.000 0.00 0.00 0.00 3.36
1517 1632 0.298707 CATGCACGCACGTACTGATC 59.701 55.000 0.00 0.00 0.00 2.92
1518 1633 1.695893 GCATGCACGCACGTACTGAT 61.696 55.000 14.21 0.00 0.00 2.90
1519 1634 2.379634 GCATGCACGCACGTACTGA 61.380 57.895 14.21 0.00 0.00 3.41
1520 1635 1.075979 TAGCATGCACGCACGTACTG 61.076 55.000 21.98 0.00 0.00 2.74
1521 1636 0.179111 ATAGCATGCACGCACGTACT 60.179 50.000 21.98 0.00 0.00 2.73
1522 1637 1.189446 GTATAGCATGCACGCACGTAC 59.811 52.381 21.98 2.98 0.00 3.67
1523 1638 1.066454 AGTATAGCATGCACGCACGTA 59.934 47.619 21.98 1.26 0.00 3.57
1524 1639 0.179111 AGTATAGCATGCACGCACGT 60.179 50.000 21.98 0.00 0.00 4.49
1525 1640 0.230515 CAGTATAGCATGCACGCACG 59.769 55.000 21.98 0.00 0.00 5.34
1526 1641 0.041839 GCAGTATAGCATGCACGCAC 60.042 55.000 21.98 11.69 42.11 5.34
1527 1642 0.179076 AGCAGTATAGCATGCACGCA 60.179 50.000 21.98 1.79 45.01 5.24
1528 1643 0.234106 CAGCAGTATAGCATGCACGC 59.766 55.000 21.98 15.84 45.01 5.34
1529 1644 1.259770 CACAGCAGTATAGCATGCACG 59.740 52.381 21.98 7.21 45.01 5.34
1530 1645 2.543012 CTCACAGCAGTATAGCATGCAC 59.457 50.000 21.98 9.67 45.01 4.57
1531 1646 2.169144 ACTCACAGCAGTATAGCATGCA 59.831 45.455 21.98 6.36 45.01 3.96
1532 1647 2.831333 ACTCACAGCAGTATAGCATGC 58.169 47.619 10.51 10.51 42.87 4.06
1533 1648 4.928020 CCATACTCACAGCAGTATAGCATG 59.072 45.833 0.00 0.00 37.47 4.06
1534 1649 4.835056 TCCATACTCACAGCAGTATAGCAT 59.165 41.667 0.00 0.00 37.47 3.79
1535 1650 4.215109 TCCATACTCACAGCAGTATAGCA 58.785 43.478 0.00 0.00 37.47 3.49
1536 1651 4.855715 TCCATACTCACAGCAGTATAGC 57.144 45.455 0.00 0.00 37.47 2.97
1537 1652 6.403746 CCGTATCCATACTCACAGCAGTATAG 60.404 46.154 0.00 0.00 37.47 1.31
1538 1653 5.414765 CCGTATCCATACTCACAGCAGTATA 59.585 44.000 0.00 0.00 37.47 1.47
1539 1654 4.218635 CCGTATCCATACTCACAGCAGTAT 59.781 45.833 0.00 0.00 39.74 2.12
1540 1655 3.568430 CCGTATCCATACTCACAGCAGTA 59.432 47.826 0.00 0.00 33.32 2.74
1541 1656 2.362397 CCGTATCCATACTCACAGCAGT 59.638 50.000 0.00 0.00 0.00 4.40
1542 1657 2.623416 TCCGTATCCATACTCACAGCAG 59.377 50.000 0.00 0.00 0.00 4.24
1543 1658 2.361119 GTCCGTATCCATACTCACAGCA 59.639 50.000 0.00 0.00 0.00 4.41
1544 1659 2.361119 TGTCCGTATCCATACTCACAGC 59.639 50.000 0.00 0.00 0.00 4.40
1545 1660 3.883489 TCTGTCCGTATCCATACTCACAG 59.117 47.826 13.76 13.76 39.48 3.66
1546 1661 3.883489 CTCTGTCCGTATCCATACTCACA 59.117 47.826 0.00 0.00 0.00 3.58
1547 1662 4.023878 GTCTCTGTCCGTATCCATACTCAC 60.024 50.000 0.00 0.00 0.00 3.51
1548 1663 4.135306 GTCTCTGTCCGTATCCATACTCA 58.865 47.826 0.00 0.00 0.00 3.41
1563 1678 2.164624 GGACAATACTCTGCGTCTCTGT 59.835 50.000 0.00 0.00 0.00 3.41
1571 1686 5.819379 TGATCAATCAAGGACAATACTCTGC 59.181 40.000 0.00 0.00 33.08 4.26
1573 1688 6.950842 TGTGATCAATCAAGGACAATACTCT 58.049 36.000 0.00 0.00 38.75 3.24
1798 2029 6.208644 ACTGTCAAACACATGTAATTTCTGC 58.791 36.000 0.00 0.00 33.23 4.26
1811 2042 3.065233 TCAGCATGTCAACTGTCAAACAC 59.935 43.478 0.00 0.00 37.40 3.32
1925 2156 1.891919 GCTTGCCGGTTCAGTGACA 60.892 57.895 1.90 0.00 0.00 3.58
1999 2230 4.223700 TCCACTCTTACACGTAGACCTAGA 59.776 45.833 0.00 0.00 0.00 2.43
2000 2231 4.332268 GTCCACTCTTACACGTAGACCTAG 59.668 50.000 0.00 0.00 0.00 3.02
2001 2232 4.019860 AGTCCACTCTTACACGTAGACCTA 60.020 45.833 0.00 0.00 0.00 3.08
2002 2233 3.080319 GTCCACTCTTACACGTAGACCT 58.920 50.000 0.00 0.00 0.00 3.85
2003 2234 3.080319 AGTCCACTCTTACACGTAGACC 58.920 50.000 0.00 0.00 0.00 3.85
2004 2235 4.762956 AAGTCCACTCTTACACGTAGAC 57.237 45.455 0.00 0.00 0.00 2.59
2097 2328 1.298157 CGTTCTGATGCAAAGGCCGA 61.298 55.000 0.00 0.00 40.13 5.54
2152 2383 3.579151 GACCTGGAGACCTTTGTAGAACT 59.421 47.826 0.00 0.00 0.00 3.01
2281 2512 0.661020 CGGTTTGGATGGCGGTTATC 59.339 55.000 0.00 0.00 0.00 1.75
2284 2515 2.675075 CCGGTTTGGATGGCGGTT 60.675 61.111 0.00 0.00 42.00 4.44
2397 2628 0.834687 TCTTCCGGGCCACTACACTT 60.835 55.000 4.39 0.00 0.00 3.16
2420 2651 7.846644 ACAACAAAAATTCATTTCTTGCAGA 57.153 28.000 0.00 0.00 0.00 4.26
2481 2713 5.073691 AGGAGTATGTGCTTTATTATGGGCT 59.926 40.000 0.00 0.00 0.00 5.19
2546 2778 3.557824 CGTTACTTGGGACGTGGC 58.442 61.111 0.00 0.00 34.75 5.01
2558 2790 4.175516 TCCGAATACCATCAACACGTTAC 58.824 43.478 0.00 0.00 0.00 2.50
2778 3011 7.865706 AACATGTCTGAAAAGTCAAAGTACT 57.134 32.000 0.00 0.00 31.88 2.73
2795 3028 4.259850 GCTATTCCTCGTTCGAAACATGTC 60.260 45.833 0.00 0.00 0.00 3.06
2865 3100 6.121776 TGAGCTGGAAACTAACAAGGAATA 57.878 37.500 0.00 0.00 0.00 1.75
2870 3105 5.010012 ACCAATTGAGCTGGAAACTAACAAG 59.990 40.000 7.12 0.00 37.40 3.16
2917 3152 4.631377 CACTTAGTGCGAAGATTGATGGAA 59.369 41.667 0.00 0.00 0.00 3.53
2962 3197 4.587584 ATTTAGAAGTACTCTAGCGGGC 57.412 45.455 0.00 0.00 37.93 6.13
2974 3209 9.539194 AATCCTCTGAATTTCCAATTTAGAAGT 57.461 29.630 5.51 0.00 0.00 3.01
2977 3212 8.115384 TCCAATCCTCTGAATTTCCAATTTAGA 58.885 33.333 4.25 4.25 0.00 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.