Multiple sequence alignment - TraesCS3A01G284500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G284500 chr3A 100.000 2726 0 0 1 2726 513524337 513527062 0.000000e+00 5035
1 TraesCS3A01G284500 chr3B 94.029 1323 65 8 1409 2726 513490000 513491313 0.000000e+00 1993
2 TraesCS3A01G284500 chr3B 88.979 1107 65 20 321 1413 513488898 513489961 0.000000e+00 1315
3 TraesCS3A01G284500 chr3D 89.029 1112 76 20 321 1413 393549454 393550538 0.000000e+00 1336
4 TraesCS3A01G284500 chr3D 89.986 729 35 19 1409 2131 393550577 393551273 0.000000e+00 907
5 TraesCS3A01G284500 chr3D 92.208 77 5 1 2122 2198 393551816 393551891 1.030000e-19 108
6 TraesCS3A01G284500 chr4B 85.714 161 19 4 114 271 440279490 440279331 1.680000e-37 167


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G284500 chr3A 513524337 513527062 2725 False 5035.000000 5035 100.000000 1 2726 1 chr3A.!!$F1 2725
1 TraesCS3A01G284500 chr3B 513488898 513491313 2415 False 1654.000000 1993 91.504000 321 2726 2 chr3B.!!$F1 2405
2 TraesCS3A01G284500 chr3D 393549454 393551891 2437 False 783.666667 1336 90.407667 321 2198 3 chr3D.!!$F1 1877

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
180 181 0.035534 ATGCCACCGATGCACTTACA 60.036 50.0 0.0 0.0 42.38 2.41 F
181 182 0.035534 TGCCACCGATGCACTTACAT 60.036 50.0 0.0 0.0 32.85 2.29 F
383 384 0.459899 TCACCGACAATCCATCCGAG 59.540 55.0 0.0 0.0 0.00 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1442 1557 0.249322 CGTCACGTTCACCACCTTCT 60.249 55.000 0.00 0.0 0.00 2.85 R
1481 1596 0.811616 CATCACCAGGAAGTAGCCGC 60.812 60.000 0.00 0.0 0.00 6.53 R
2198 2872 1.226717 GTGGTAGCGCTTCCGAGAG 60.227 63.158 25.55 0.0 36.29 3.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 9.546909 GAAATAATCCACTAAATCATACATGCG 57.453 33.333 0.00 0.00 0.00 4.73
69 70 5.362556 AATCCACTAAATCATACATGCGC 57.637 39.130 0.00 0.00 0.00 6.09
70 71 4.071961 TCCACTAAATCATACATGCGCT 57.928 40.909 9.73 0.00 0.00 5.92
71 72 4.058124 TCCACTAAATCATACATGCGCTC 58.942 43.478 9.73 0.00 0.00 5.03
72 73 3.809279 CCACTAAATCATACATGCGCTCA 59.191 43.478 9.73 0.00 0.00 4.26
73 74 4.319046 CCACTAAATCATACATGCGCTCAC 60.319 45.833 9.73 0.00 0.00 3.51
74 75 4.509230 CACTAAATCATACATGCGCTCACT 59.491 41.667 9.73 0.00 0.00 3.41
75 76 5.691754 CACTAAATCATACATGCGCTCACTA 59.308 40.000 9.73 0.00 0.00 2.74
76 77 6.200854 CACTAAATCATACATGCGCTCACTAA 59.799 38.462 9.73 0.00 0.00 2.24
77 78 6.931281 ACTAAATCATACATGCGCTCACTAAT 59.069 34.615 9.73 0.00 0.00 1.73
78 79 5.852738 AATCATACATGCGCTCACTAATC 57.147 39.130 9.73 0.00 0.00 1.75
79 80 4.590850 TCATACATGCGCTCACTAATCT 57.409 40.909 9.73 0.00 0.00 2.40
80 81 4.948847 TCATACATGCGCTCACTAATCTT 58.051 39.130 9.73 0.00 0.00 2.40
81 82 4.984785 TCATACATGCGCTCACTAATCTTC 59.015 41.667 9.73 0.00 0.00 2.87
82 83 3.533606 ACATGCGCTCACTAATCTTCT 57.466 42.857 9.73 0.00 0.00 2.85
83 84 3.193263 ACATGCGCTCACTAATCTTCTG 58.807 45.455 9.73 0.00 0.00 3.02
84 85 2.299993 TGCGCTCACTAATCTTCTGG 57.700 50.000 9.73 0.00 0.00 3.86
85 86 1.134699 TGCGCTCACTAATCTTCTGGG 60.135 52.381 9.73 0.00 0.00 4.45
86 87 1.137086 GCGCTCACTAATCTTCTGGGA 59.863 52.381 0.00 0.00 0.00 4.37
87 88 2.418746 GCGCTCACTAATCTTCTGGGAA 60.419 50.000 0.00 0.00 0.00 3.97
88 89 3.861840 CGCTCACTAATCTTCTGGGAAA 58.138 45.455 0.00 0.00 0.00 3.13
89 90 4.253685 CGCTCACTAATCTTCTGGGAAAA 58.746 43.478 0.00 0.00 0.00 2.29
90 91 4.695455 CGCTCACTAATCTTCTGGGAAAAA 59.305 41.667 0.00 0.00 0.00 1.94
91 92 5.355350 CGCTCACTAATCTTCTGGGAAAAAT 59.645 40.000 0.00 0.00 0.00 1.82
92 93 6.127897 CGCTCACTAATCTTCTGGGAAAAATT 60.128 38.462 0.00 0.00 0.00 1.82
93 94 7.254137 GCTCACTAATCTTCTGGGAAAAATTC 58.746 38.462 0.00 0.00 0.00 2.17
94 95 7.377766 TCACTAATCTTCTGGGAAAAATTCG 57.622 36.000 0.00 0.00 0.00 3.34
95 96 6.374333 TCACTAATCTTCTGGGAAAAATTCGG 59.626 38.462 0.00 0.00 0.00 4.30
96 97 4.456280 AATCTTCTGGGAAAAATTCGGC 57.544 40.909 0.00 0.00 0.00 5.54
97 98 3.154827 TCTTCTGGGAAAAATTCGGCT 57.845 42.857 0.00 0.00 0.00 5.52
98 99 3.081804 TCTTCTGGGAAAAATTCGGCTC 58.918 45.455 0.00 0.00 0.00 4.70
99 100 2.577606 TCTGGGAAAAATTCGGCTCA 57.422 45.000 0.00 0.00 0.00 4.26
100 101 2.870175 TCTGGGAAAAATTCGGCTCAA 58.130 42.857 0.00 0.00 0.00 3.02
101 102 3.430453 TCTGGGAAAAATTCGGCTCAAT 58.570 40.909 0.00 0.00 0.00 2.57
102 103 3.443681 TCTGGGAAAAATTCGGCTCAATC 59.556 43.478 0.00 0.00 0.00 2.67
103 104 2.163412 TGGGAAAAATTCGGCTCAATCG 59.837 45.455 0.00 0.00 0.00 3.34
104 105 2.479560 GGGAAAAATTCGGCTCAATCGG 60.480 50.000 0.00 0.00 0.00 4.18
105 106 2.422127 GGAAAAATTCGGCTCAATCGGA 59.578 45.455 0.00 0.00 0.00 4.55
106 107 3.487544 GGAAAAATTCGGCTCAATCGGAG 60.488 47.826 0.00 0.00 46.93 4.63
116 117 3.687572 CTCAATCGGAGCAAAGGATTG 57.312 47.619 11.33 11.33 45.19 2.67
117 118 3.012518 CTCAATCGGAGCAAAGGATTGT 58.987 45.455 14.98 0.00 44.52 2.71
118 119 2.749076 TCAATCGGAGCAAAGGATTGTG 59.251 45.455 14.98 0.00 44.52 3.33
119 120 2.749076 CAATCGGAGCAAAGGATTGTGA 59.251 45.455 10.03 0.00 41.16 3.58
120 121 2.559698 TCGGAGCAAAGGATTGTGAA 57.440 45.000 0.00 0.00 38.85 3.18
121 122 2.857483 TCGGAGCAAAGGATTGTGAAA 58.143 42.857 0.00 0.00 38.85 2.69
122 123 3.420893 TCGGAGCAAAGGATTGTGAAAT 58.579 40.909 0.00 0.00 38.85 2.17
123 124 3.826157 TCGGAGCAAAGGATTGTGAAATT 59.174 39.130 0.00 0.00 38.85 1.82
124 125 3.922240 CGGAGCAAAGGATTGTGAAATTG 59.078 43.478 0.00 0.00 38.85 2.32
125 126 4.321156 CGGAGCAAAGGATTGTGAAATTGA 60.321 41.667 0.00 0.00 38.85 2.57
126 127 4.925646 GGAGCAAAGGATTGTGAAATTGAC 59.074 41.667 0.00 0.00 38.85 3.18
127 128 5.509501 GGAGCAAAGGATTGTGAAATTGACA 60.510 40.000 0.00 0.00 38.85 3.58
128 129 6.105397 AGCAAAGGATTGTGAAATTGACAT 57.895 33.333 0.00 0.00 38.85 3.06
129 130 7.230849 AGCAAAGGATTGTGAAATTGACATA 57.769 32.000 0.00 0.00 38.85 2.29
130 131 7.844009 AGCAAAGGATTGTGAAATTGACATAT 58.156 30.769 0.00 0.00 38.85 1.78
131 132 7.977853 AGCAAAGGATTGTGAAATTGACATATC 59.022 33.333 0.00 0.00 38.85 1.63
132 133 7.977853 GCAAAGGATTGTGAAATTGACATATCT 59.022 33.333 0.00 0.00 38.85 1.98
135 136 9.911788 AAGGATTGTGAAATTGACATATCTAGT 57.088 29.630 0.00 0.00 0.00 2.57
136 137 9.911788 AGGATTGTGAAATTGACATATCTAGTT 57.088 29.630 0.00 0.00 0.00 2.24
137 138 9.941664 GGATTGTGAAATTGACATATCTAGTTG 57.058 33.333 0.00 0.00 0.00 3.16
138 139 9.941664 GATTGTGAAATTGACATATCTAGTTGG 57.058 33.333 0.00 0.00 0.00 3.77
139 140 7.320443 TGTGAAATTGACATATCTAGTTGGC 57.680 36.000 0.00 0.00 0.00 4.52
140 141 7.112122 TGTGAAATTGACATATCTAGTTGGCT 58.888 34.615 0.00 0.00 0.00 4.75
141 142 7.066163 TGTGAAATTGACATATCTAGTTGGCTG 59.934 37.037 0.00 0.00 0.00 4.85
142 143 6.038603 TGAAATTGACATATCTAGTTGGCTGC 59.961 38.462 0.00 0.00 0.00 5.25
143 144 4.760530 TTGACATATCTAGTTGGCTGCT 57.239 40.909 0.00 0.00 0.00 4.24
144 145 4.063998 TGACATATCTAGTTGGCTGCTG 57.936 45.455 0.00 0.00 0.00 4.41
145 146 3.706086 TGACATATCTAGTTGGCTGCTGA 59.294 43.478 0.00 0.00 0.00 4.26
146 147 4.346127 TGACATATCTAGTTGGCTGCTGAT 59.654 41.667 0.00 0.00 0.00 2.90
147 148 4.639334 ACATATCTAGTTGGCTGCTGATG 58.361 43.478 0.00 0.00 0.00 3.07
148 149 4.102210 ACATATCTAGTTGGCTGCTGATGT 59.898 41.667 0.00 0.00 0.00 3.06
149 150 2.391616 TCTAGTTGGCTGCTGATGTG 57.608 50.000 0.00 0.00 0.00 3.21
150 151 1.065926 TCTAGTTGGCTGCTGATGTGG 60.066 52.381 0.00 0.00 0.00 4.17
151 152 0.677731 TAGTTGGCTGCTGATGTGGC 60.678 55.000 0.00 0.00 0.00 5.01
152 153 2.677524 TTGGCTGCTGATGTGGCC 60.678 61.111 0.00 0.00 44.31 5.36
156 157 2.360350 CTGCTGATGTGGCCGGTT 60.360 61.111 1.90 0.00 0.00 4.44
157 158 1.973281 CTGCTGATGTGGCCGGTTT 60.973 57.895 1.90 0.00 0.00 3.27
158 159 1.526575 CTGCTGATGTGGCCGGTTTT 61.527 55.000 1.90 0.00 0.00 2.43
159 160 1.112315 TGCTGATGTGGCCGGTTTTT 61.112 50.000 1.90 0.00 0.00 1.94
175 176 2.645730 TTTTTATGCCACCGATGCAC 57.354 45.000 0.00 0.00 42.38 4.57
176 177 1.832883 TTTTATGCCACCGATGCACT 58.167 45.000 0.00 0.00 42.38 4.40
177 178 1.832883 TTTATGCCACCGATGCACTT 58.167 45.000 0.00 0.00 42.38 3.16
178 179 2.700722 TTATGCCACCGATGCACTTA 57.299 45.000 0.00 0.00 42.38 2.24
179 180 1.948104 TATGCCACCGATGCACTTAC 58.052 50.000 0.00 0.00 42.38 2.34
180 181 0.035534 ATGCCACCGATGCACTTACA 60.036 50.000 0.00 0.00 42.38 2.41
181 182 0.035534 TGCCACCGATGCACTTACAT 60.036 50.000 0.00 0.00 32.85 2.29
182 183 1.208293 TGCCACCGATGCACTTACATA 59.792 47.619 0.00 0.00 32.85 2.29
183 184 1.597663 GCCACCGATGCACTTACATAC 59.402 52.381 0.00 0.00 0.00 2.39
184 185 2.741878 GCCACCGATGCACTTACATACT 60.742 50.000 0.00 0.00 0.00 2.12
185 186 2.866156 CCACCGATGCACTTACATACTG 59.134 50.000 0.00 0.00 0.00 2.74
186 187 2.866156 CACCGATGCACTTACATACTGG 59.134 50.000 0.00 0.00 0.00 4.00
187 188 2.764010 ACCGATGCACTTACATACTGGA 59.236 45.455 0.00 0.00 0.00 3.86
188 189 3.123804 CCGATGCACTTACATACTGGAC 58.876 50.000 0.00 0.00 0.00 4.02
189 190 3.123804 CGATGCACTTACATACTGGACC 58.876 50.000 0.00 0.00 0.00 4.46
190 191 3.467803 GATGCACTTACATACTGGACCC 58.532 50.000 0.00 0.00 0.00 4.46
191 192 2.261729 TGCACTTACATACTGGACCCA 58.738 47.619 0.00 0.00 0.00 4.51
192 193 2.027561 TGCACTTACATACTGGACCCAC 60.028 50.000 0.00 0.00 0.00 4.61
193 194 2.236395 GCACTTACATACTGGACCCACT 59.764 50.000 0.00 0.00 0.00 4.00
194 195 3.307480 GCACTTACATACTGGACCCACTT 60.307 47.826 0.00 0.00 0.00 3.16
195 196 4.253685 CACTTACATACTGGACCCACTTG 58.746 47.826 0.00 0.00 0.00 3.16
196 197 3.908103 ACTTACATACTGGACCCACTTGT 59.092 43.478 0.00 0.00 0.00 3.16
197 198 4.020485 ACTTACATACTGGACCCACTTGTC 60.020 45.833 0.00 0.00 34.42 3.18
198 199 2.334977 ACATACTGGACCCACTTGTCA 58.665 47.619 0.00 0.00 36.97 3.58
199 200 2.912956 ACATACTGGACCCACTTGTCAT 59.087 45.455 0.00 0.00 36.97 3.06
200 201 3.273434 CATACTGGACCCACTTGTCATG 58.727 50.000 0.00 0.00 36.97 3.07
201 202 1.434188 ACTGGACCCACTTGTCATGA 58.566 50.000 0.00 0.00 36.97 3.07
202 203 1.774254 ACTGGACCCACTTGTCATGAA 59.226 47.619 0.00 0.00 36.97 2.57
203 204 2.376518 ACTGGACCCACTTGTCATGAAT 59.623 45.455 0.00 0.00 36.97 2.57
204 205 3.012518 CTGGACCCACTTGTCATGAATC 58.987 50.000 0.00 0.00 36.97 2.52
205 206 2.374839 TGGACCCACTTGTCATGAATCA 59.625 45.455 0.00 0.00 36.97 2.57
206 207 3.010472 TGGACCCACTTGTCATGAATCAT 59.990 43.478 0.00 0.00 36.97 2.45
207 208 3.379372 GGACCCACTTGTCATGAATCATG 59.621 47.826 16.63 16.63 42.60 3.07
208 209 4.012374 GACCCACTTGTCATGAATCATGT 58.988 43.478 21.13 0.45 41.98 3.21
209 210 4.012374 ACCCACTTGTCATGAATCATGTC 58.988 43.478 21.13 16.64 41.98 3.06
210 211 4.263639 ACCCACTTGTCATGAATCATGTCT 60.264 41.667 21.13 0.00 41.98 3.41
211 212 5.045651 ACCCACTTGTCATGAATCATGTCTA 60.046 40.000 21.13 12.53 41.98 2.59
212 213 5.882000 CCCACTTGTCATGAATCATGTCTAA 59.118 40.000 21.13 13.73 41.98 2.10
213 214 6.183360 CCCACTTGTCATGAATCATGTCTAAC 60.183 42.308 21.13 13.12 41.98 2.34
214 215 6.372381 CCACTTGTCATGAATCATGTCTAACA 59.628 38.462 21.13 15.33 41.98 2.41
215 216 7.239271 CACTTGTCATGAATCATGTCTAACAC 58.761 38.462 21.13 12.15 41.98 3.32
216 217 6.936335 ACTTGTCATGAATCATGTCTAACACA 59.064 34.615 21.13 14.36 41.98 3.72
217 218 6.726258 TGTCATGAATCATGTCTAACACAC 57.274 37.500 21.13 10.87 41.98 3.82
218 219 5.643348 TGTCATGAATCATGTCTAACACACC 59.357 40.000 21.13 1.39 41.98 4.16
219 220 5.877012 GTCATGAATCATGTCTAACACACCT 59.123 40.000 21.13 0.00 41.98 4.00
220 221 7.041721 GTCATGAATCATGTCTAACACACCTA 58.958 38.462 21.13 0.00 41.98 3.08
221 222 7.549134 GTCATGAATCATGTCTAACACACCTAA 59.451 37.037 21.13 0.00 41.98 2.69
222 223 8.100164 TCATGAATCATGTCTAACACACCTAAA 58.900 33.333 21.13 0.00 41.98 1.85
223 224 8.896744 CATGAATCATGTCTAACACACCTAAAT 58.103 33.333 14.70 0.00 38.04 1.40
224 225 8.267620 TGAATCATGTCTAACACACCTAAATG 57.732 34.615 0.00 0.00 38.04 2.32
225 226 8.100164 TGAATCATGTCTAACACACCTAAATGA 58.900 33.333 0.00 0.00 38.04 2.57
226 227 9.113838 GAATCATGTCTAACACACCTAAATGAT 57.886 33.333 0.00 0.00 38.04 2.45
227 228 7.848223 TCATGTCTAACACACCTAAATGATG 57.152 36.000 0.00 0.00 38.04 3.07
228 229 7.619965 TCATGTCTAACACACCTAAATGATGA 58.380 34.615 0.00 0.00 38.04 2.92
229 230 8.267183 TCATGTCTAACACACCTAAATGATGAT 58.733 33.333 0.00 0.00 38.04 2.45
230 231 8.896744 CATGTCTAACACACCTAAATGATGATT 58.103 33.333 0.00 0.00 38.04 2.57
231 232 8.862325 TGTCTAACACACCTAAATGATGATTT 57.138 30.769 0.00 0.00 35.83 2.17
232 233 9.952030 TGTCTAACACACCTAAATGATGATTTA 57.048 29.630 0.00 0.00 33.63 1.40
245 246 8.437360 AAATGATGATTTAGACGTATCTGCAA 57.563 30.769 0.00 0.00 36.29 4.08
246 247 6.828502 TGATGATTTAGACGTATCTGCAAC 57.171 37.500 0.00 0.00 36.29 4.17
247 248 5.458779 TGATGATTTAGACGTATCTGCAACG 59.541 40.000 7.83 7.83 45.64 4.10
248 249 4.989044 TGATTTAGACGTATCTGCAACGA 58.011 39.130 15.82 0.00 42.90 3.85
249 250 5.034797 TGATTTAGACGTATCTGCAACGAG 58.965 41.667 15.82 0.00 42.90 4.18
250 251 4.430137 TTTAGACGTATCTGCAACGAGT 57.570 40.909 15.82 5.22 42.90 4.18
251 252 4.430137 TTAGACGTATCTGCAACGAGTT 57.570 40.909 15.82 3.96 42.90 3.01
252 253 5.550232 TTAGACGTATCTGCAACGAGTTA 57.450 39.130 15.82 3.12 42.90 2.24
253 254 3.756069 AGACGTATCTGCAACGAGTTAC 58.244 45.455 15.82 0.00 42.90 2.50
254 255 2.850647 GACGTATCTGCAACGAGTTACC 59.149 50.000 15.82 0.00 42.90 2.85
255 256 2.229543 ACGTATCTGCAACGAGTTACCA 59.770 45.455 15.82 0.00 42.90 3.25
256 257 3.119245 ACGTATCTGCAACGAGTTACCAT 60.119 43.478 15.82 0.00 42.90 3.55
257 258 4.096833 ACGTATCTGCAACGAGTTACCATA 59.903 41.667 15.82 0.00 42.90 2.74
258 259 5.038683 CGTATCTGCAACGAGTTACCATAA 58.961 41.667 3.31 0.00 42.90 1.90
259 260 5.690409 CGTATCTGCAACGAGTTACCATAAT 59.310 40.000 3.31 0.00 42.90 1.28
260 261 6.859508 CGTATCTGCAACGAGTTACCATAATA 59.140 38.462 3.31 0.00 42.90 0.98
261 262 7.541091 CGTATCTGCAACGAGTTACCATAATAT 59.459 37.037 3.31 0.00 42.90 1.28
262 263 7.658179 ATCTGCAACGAGTTACCATAATATG 57.342 36.000 0.00 0.00 0.00 1.78
263 264 6.578944 TCTGCAACGAGTTACCATAATATGT 58.421 36.000 0.00 0.00 0.00 2.29
264 265 6.478673 TCTGCAACGAGTTACCATAATATGTG 59.521 38.462 0.00 0.00 0.00 3.21
265 266 5.525745 TGCAACGAGTTACCATAATATGTGG 59.474 40.000 5.98 5.98 42.55 4.17
278 279 8.464770 CCATAATATGTGGTGTTTCTTTTGTG 57.535 34.615 0.00 0.00 31.96 3.33
279 280 7.063308 CCATAATATGTGGTGTTTCTTTTGTGC 59.937 37.037 0.00 0.00 31.96 4.57
280 281 3.883830 ATGTGGTGTTTCTTTTGTGCA 57.116 38.095 0.00 0.00 0.00 4.57
281 282 3.667497 TGTGGTGTTTCTTTTGTGCAA 57.333 38.095 0.00 0.00 0.00 4.08
282 283 3.321497 TGTGGTGTTTCTTTTGTGCAAC 58.679 40.909 0.00 0.00 37.35 4.17
300 301 7.842982 TGTGCAACACTAATACCAATAGTAGA 58.157 34.615 0.00 0.00 45.67 2.59
301 302 8.482943 TGTGCAACACTAATACCAATAGTAGAT 58.517 33.333 0.00 0.00 45.67 1.98
302 303 8.765219 GTGCAACACTAATACCAATAGTAGATG 58.235 37.037 0.00 0.00 33.92 2.90
303 304 7.931407 TGCAACACTAATACCAATAGTAGATGG 59.069 37.037 3.74 3.74 42.60 3.51
304 305 7.095187 GCAACACTAATACCAATAGTAGATGGC 60.095 40.741 4.98 0.00 40.51 4.40
305 306 7.857404 ACACTAATACCAATAGTAGATGGCT 57.143 36.000 4.98 0.00 40.51 4.75
306 307 8.263854 ACACTAATACCAATAGTAGATGGCTT 57.736 34.615 4.98 2.91 40.51 4.35
307 308 8.150945 ACACTAATACCAATAGTAGATGGCTTG 58.849 37.037 4.98 0.00 40.51 4.01
308 309 8.150945 CACTAATACCAATAGTAGATGGCTTGT 58.849 37.037 4.98 0.00 40.51 3.16
309 310 8.150945 ACTAATACCAATAGTAGATGGCTTGTG 58.849 37.037 4.98 0.00 40.51 3.33
310 311 3.545703 ACCAATAGTAGATGGCTTGTGC 58.454 45.455 4.98 0.00 40.51 4.57
311 312 3.054434 ACCAATAGTAGATGGCTTGTGCA 60.054 43.478 4.98 0.00 40.51 4.57
312 313 3.947196 CCAATAGTAGATGGCTTGTGCAA 59.053 43.478 0.00 0.00 41.91 4.08
313 314 4.581824 CCAATAGTAGATGGCTTGTGCAAT 59.418 41.667 0.00 0.00 41.91 3.56
314 315 5.068198 CCAATAGTAGATGGCTTGTGCAATT 59.932 40.000 0.00 0.00 41.91 2.32
315 316 6.406177 CCAATAGTAGATGGCTTGTGCAATTT 60.406 38.462 0.00 0.00 41.91 1.82
316 317 4.708726 AGTAGATGGCTTGTGCAATTTC 57.291 40.909 0.00 0.00 41.91 2.17
317 318 3.445096 AGTAGATGGCTTGTGCAATTTCC 59.555 43.478 0.00 0.00 41.91 3.13
318 319 2.532843 AGATGGCTTGTGCAATTTCCT 58.467 42.857 0.00 0.00 41.91 3.36
319 320 2.494870 AGATGGCTTGTGCAATTTCCTC 59.505 45.455 0.00 0.00 41.91 3.71
322 323 1.888512 GGCTTGTGCAATTTCCTCAGA 59.111 47.619 0.00 0.00 41.91 3.27
337 338 2.348666 CCTCAGATTTAAACGGTCAGCG 59.651 50.000 0.00 0.00 0.00 5.18
340 341 0.800012 GATTTAAACGGTCAGCGCCA 59.200 50.000 2.29 0.00 0.00 5.69
352 353 0.954449 CAGCGCCAGGATCCATGATC 60.954 60.000 15.82 0.00 38.25 2.92
372 373 1.807495 TACGTGTGGCATCACCGACA 61.807 55.000 0.00 0.00 43.94 4.35
383 384 0.459899 TCACCGACAATCCATCCGAG 59.540 55.000 0.00 0.00 0.00 4.63
384 385 1.144057 ACCGACAATCCATCCGAGC 59.856 57.895 0.00 0.00 0.00 5.03
385 386 1.143838 CCGACAATCCATCCGAGCA 59.856 57.895 0.00 0.00 0.00 4.26
386 387 0.877649 CCGACAATCCATCCGAGCAG 60.878 60.000 0.00 0.00 0.00 4.24
403 404 3.807538 GGGACGCGTCGTGCTAGA 61.808 66.667 30.99 0.00 46.76 2.43
427 428 1.270625 TGACACACCGGAACAGAATCC 60.271 52.381 9.46 0.00 36.05 3.01
439 440 0.721718 CAGAATCCGACGAAGCAACC 59.278 55.000 0.00 0.00 0.00 3.77
445 460 2.671177 CGACGAAGCAACCTGGCAG 61.671 63.158 7.75 7.75 35.83 4.85
461 476 1.555075 GGCAGGTTACTCTGTCCATCA 59.445 52.381 3.57 0.00 37.12 3.07
470 485 4.939399 TGTCCATCACAGGCATCG 57.061 55.556 0.00 0.00 0.00 3.84
474 489 2.027653 TGTCCATCACAGGCATCGTTTA 60.028 45.455 0.00 0.00 0.00 2.01
513 528 5.857822 ATTGCCGAGACTAAACAAACTAC 57.142 39.130 0.00 0.00 0.00 2.73
559 574 1.098050 AGAAAGGCGCAACCATCATC 58.902 50.000 10.83 0.00 43.14 2.92
564 579 2.023741 CGCAACCATCATCGCAGC 59.976 61.111 0.00 0.00 0.00 5.25
565 580 2.752939 CGCAACCATCATCGCAGCA 61.753 57.895 0.00 0.00 0.00 4.41
583 598 3.498397 CAGCAACTACGGTGAAGTCAAAT 59.502 43.478 0.00 0.00 36.48 2.32
588 603 4.957296 ACTACGGTGAAGTCAAATGAAGT 58.043 39.130 0.00 0.00 0.00 3.01
589 604 4.750098 ACTACGGTGAAGTCAAATGAAGTG 59.250 41.667 0.00 0.00 0.00 3.16
612 627 1.648467 GCTCTGCGCTTAACCCAAGG 61.648 60.000 9.73 0.00 34.56 3.61
638 653 1.421410 GCGCATTCTCACGAACGGAT 61.421 55.000 0.30 0.00 30.67 4.18
639 654 0.572590 CGCATTCTCACGAACGGATC 59.427 55.000 0.00 0.00 30.67 3.36
674 689 5.402270 CACCGAAAACCACATCTTGAAATTC 59.598 40.000 0.00 0.00 0.00 2.17
700 715 8.626526 CATCATCATATCATCACACTTTCCAAA 58.373 33.333 0.00 0.00 0.00 3.28
701 716 7.988737 TCATCATATCATCACACTTTCCAAAC 58.011 34.615 0.00 0.00 0.00 2.93
705 720 4.747540 TCATCACACTTTCCAAACGATG 57.252 40.909 0.00 0.00 0.00 3.84
763 778 3.825014 AGACAAAATGACAGCAAGCAGAT 59.175 39.130 0.00 0.00 0.00 2.90
802 817 3.067106 CTCTGCATTAACTGTGAACGGT 58.933 45.455 0.00 0.00 36.96 4.83
913 928 0.603569 ACACGTCTGATCACCCAGTC 59.396 55.000 0.00 0.00 35.71 3.51
922 937 2.912295 TGATCACCCAGTCCATTCTGAA 59.088 45.455 0.00 0.00 37.61 3.02
930 945 5.191722 ACCCAGTCCATTCTGAATTTAGCTA 59.808 40.000 0.00 0.00 37.61 3.32
931 946 5.762218 CCCAGTCCATTCTGAATTTAGCTAG 59.238 44.000 0.00 0.00 37.61 3.42
932 947 6.352516 CCAGTCCATTCTGAATTTAGCTAGT 58.647 40.000 0.00 0.00 37.61 2.57
952 967 7.231722 AGCTAGTATAGTGCTTGTGCTTATACT 59.768 37.037 19.07 19.07 44.76 2.12
955 970 7.659186 AGTATAGTGCTTGTGCTTATACTACC 58.341 38.462 16.29 2.78 43.18 3.18
965 980 4.463186 GTGCTTATACTACCAGGGATCGAT 59.537 45.833 0.00 0.00 0.00 3.59
973 988 1.762957 ACCAGGGATCGATACACCTTG 59.237 52.381 10.45 8.27 0.00 3.61
1010 1025 6.892658 TTATTAGTCAGAGATGAGGAGCTC 57.107 41.667 4.71 4.71 34.60 4.09
1014 1029 2.192861 AGAGATGAGGAGCTCCGCG 61.193 63.158 28.39 0.00 42.08 6.46
1099 1114 3.984200 GACTACTCGGCCGTGGCAC 62.984 68.421 28.94 7.79 44.11 5.01
1100 1115 4.814294 CTACTCGGCCGTGGCACC 62.814 72.222 28.94 0.00 44.11 5.01
1178 1205 1.897398 GACACCAACATGTCGCCGTC 61.897 60.000 0.00 0.61 39.69 4.79
1179 1206 2.358247 ACCAACATGTCGCCGTCC 60.358 61.111 0.00 0.00 0.00 4.79
1180 1207 3.124921 CCAACATGTCGCCGTCCC 61.125 66.667 0.00 0.00 0.00 4.46
1181 1208 3.124921 CAACATGTCGCCGTCCCC 61.125 66.667 0.00 0.00 0.00 4.81
1182 1209 4.752879 AACATGTCGCCGTCCCCG 62.753 66.667 0.00 0.00 0.00 5.73
1215 1242 3.353836 CCGGTGCCACCTTTCGTG 61.354 66.667 12.94 0.00 42.62 4.35
1302 1329 1.375523 ACCGATCCAAGGTTCGCAC 60.376 57.895 12.81 0.00 39.29 5.34
1308 1335 3.726517 CAAGGTTCGCACTGCCCG 61.727 66.667 0.00 0.00 0.00 6.13
1311 1338 2.781595 AAGGTTCGCACTGCCCGTAG 62.782 60.000 0.00 0.00 0.00 3.51
1314 1341 1.141019 TTCGCACTGCCCGTAGATC 59.859 57.895 0.00 0.00 0.00 2.75
1349 1378 2.279517 CGCCTCGGCATGGAGTAC 60.280 66.667 8.87 0.00 42.06 2.73
1357 1386 4.039973 CCTCGGCATGGAGTACCTAATTAA 59.960 45.833 0.00 0.00 37.04 1.40
1373 1402 7.686434 ACCTAATTAACCTGCTCAGTCTTAAA 58.314 34.615 0.00 0.00 0.00 1.52
1442 1557 0.981183 AATCTGGTGTGCTACGGGAA 59.019 50.000 0.00 0.00 0.00 3.97
1787 1902 5.876651 ACTAGTCATATGCAGTTGATGGA 57.123 39.130 0.00 0.00 0.00 3.41
1788 1903 6.430962 ACTAGTCATATGCAGTTGATGGAT 57.569 37.500 0.00 0.00 43.29 3.41
1789 1904 6.228995 ACTAGTCATATGCAGTTGATGGATG 58.771 40.000 0.00 0.00 40.65 3.51
1790 1905 5.300411 AGTCATATGCAGTTGATGGATGA 57.700 39.130 0.00 0.00 40.65 2.92
1791 1906 5.877491 AGTCATATGCAGTTGATGGATGAT 58.123 37.500 0.00 0.00 40.65 2.45
1792 1907 6.304624 AGTCATATGCAGTTGATGGATGATT 58.695 36.000 0.00 0.00 40.65 2.57
1793 1908 6.430308 AGTCATATGCAGTTGATGGATGATTC 59.570 38.462 0.00 0.00 40.65 2.52
1908 2029 2.551912 CGTGGGGTTGGTGCAGTTC 61.552 63.158 0.00 0.00 0.00 3.01
1932 2053 5.277825 CAGTGTAGTGCTAGTATCTTGAGC 58.722 45.833 0.00 0.00 36.72 4.26
1956 2077 2.206900 TGGCCTCTGTTCCCCTCA 59.793 61.111 3.32 0.00 0.00 3.86
2116 2238 1.583054 GTAATAGCCACCCTGCGAAG 58.417 55.000 0.00 0.00 36.02 3.79
2123 2245 0.035439 CCACCCTGCGAAGTGGTATT 60.035 55.000 9.96 0.00 46.99 1.89
2198 2872 4.979197 CAGATCTTCTATAACGTGCCTGTC 59.021 45.833 0.00 0.00 0.00 3.51
2199 2873 4.890581 AGATCTTCTATAACGTGCCTGTCT 59.109 41.667 0.00 0.00 0.00 3.41
2273 2947 1.791103 TACCAAACGCACAAGCCAGC 61.791 55.000 0.00 0.00 37.52 4.85
2277 2951 0.805711 AAACGCACAAGCCAGCAAAC 60.806 50.000 0.00 0.00 37.52 2.93
2293 2967 5.490213 CAGCAAACCTAACGATACGATTTC 58.510 41.667 0.00 0.00 0.00 2.17
2298 2972 2.544277 CCTAACGATACGATTTCGGCCA 60.544 50.000 2.24 0.00 44.95 5.36
2301 2975 1.340248 ACGATACGATTTCGGCCAGAT 59.660 47.619 2.24 0.00 44.95 2.90
2302 2976 2.555325 ACGATACGATTTCGGCCAGATA 59.445 45.455 2.24 0.00 44.95 1.98
2304 2978 3.985279 CGATACGATTTCGGCCAGATAAA 59.015 43.478 2.24 0.00 44.95 1.40
2307 2981 4.552166 ACGATTTCGGCCAGATAAATTG 57.448 40.909 2.24 9.21 44.95 2.32
2308 2982 3.243068 ACGATTTCGGCCAGATAAATTGC 60.243 43.478 2.24 0.00 44.95 3.56
2309 2983 3.003689 CGATTTCGGCCAGATAAATTGCT 59.996 43.478 2.24 0.00 35.37 3.91
2310 2984 4.540824 GATTTCGGCCAGATAAATTGCTC 58.459 43.478 2.24 0.00 0.00 4.26
2311 2985 2.708216 TCGGCCAGATAAATTGCTCA 57.292 45.000 2.24 0.00 0.00 4.26
2319 2994 5.530171 GCCAGATAAATTGCTCAGATTCTGA 59.470 40.000 15.39 15.39 38.25 3.27
2335 3010 8.792633 TCAGATTCTGATTTTTACCGATTTTGT 58.207 29.630 12.38 0.00 35.39 2.83
2338 3013 8.970691 ATTCTGATTTTTACCGATTTTGTGAG 57.029 30.769 0.00 0.00 0.00 3.51
2395 3071 7.169140 ACTTTCAAAACAATATTCGCAGTTTCC 59.831 33.333 3.03 0.00 33.45 3.13
2398 3075 6.980978 TCAAAACAATATTCGCAGTTTCCAAA 59.019 30.769 3.03 0.00 33.45 3.28
2484 3161 7.481275 AAACAATGTTTACAAAATGCAGAGG 57.519 32.000 9.92 0.00 0.00 3.69
2486 3163 6.815089 ACAATGTTTACAAAATGCAGAGGAA 58.185 32.000 0.00 0.00 0.00 3.36
2605 3283 1.867233 AGAACTGTACGCACAAAGCTG 59.133 47.619 0.00 0.00 42.61 4.24
2645 3323 0.723414 CTGCAGTTACTCATGTGCGG 59.277 55.000 5.25 0.00 38.84 5.69
2671 3349 1.888512 AGACAATTTGCCGCATCAAGT 59.111 42.857 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 9.278011 TGATTTAGTGGATTATTTCCCCATTTT 57.722 29.630 0.00 0.00 44.77 1.82
35 36 8.852671 TGATTTAGTGGATTATTTCCCCATTT 57.147 30.769 0.00 0.00 44.77 2.32
37 38 9.533831 GTATGATTTAGTGGATTATTTCCCCAT 57.466 33.333 0.00 0.00 44.77 4.00
38 39 8.506921 TGTATGATTTAGTGGATTATTTCCCCA 58.493 33.333 0.00 0.00 44.77 4.96
39 40 8.934023 TGTATGATTTAGTGGATTATTTCCCC 57.066 34.615 0.00 0.00 44.77 4.81
41 42 9.846248 GCATGTATGATTTAGTGGATTATTTCC 57.154 33.333 0.00 0.00 45.69 3.13
42 43 9.546909 CGCATGTATGATTTAGTGGATTATTTC 57.453 33.333 0.00 0.00 0.00 2.17
43 44 8.023128 GCGCATGTATGATTTAGTGGATTATTT 58.977 33.333 0.30 0.00 0.00 1.40
44 45 7.391554 AGCGCATGTATGATTTAGTGGATTATT 59.608 33.333 11.47 0.00 0.00 1.40
45 46 6.881065 AGCGCATGTATGATTTAGTGGATTAT 59.119 34.615 11.47 0.00 0.00 1.28
46 47 6.230472 AGCGCATGTATGATTTAGTGGATTA 58.770 36.000 11.47 0.00 0.00 1.75
47 48 5.065914 AGCGCATGTATGATTTAGTGGATT 58.934 37.500 11.47 0.00 0.00 3.01
48 49 4.645535 AGCGCATGTATGATTTAGTGGAT 58.354 39.130 11.47 0.00 0.00 3.41
49 50 4.058124 GAGCGCATGTATGATTTAGTGGA 58.942 43.478 11.47 0.00 0.00 4.02
50 51 3.809279 TGAGCGCATGTATGATTTAGTGG 59.191 43.478 11.47 0.00 0.00 4.00
51 52 4.509230 AGTGAGCGCATGTATGATTTAGTG 59.491 41.667 11.47 0.00 0.00 2.74
52 53 4.697514 AGTGAGCGCATGTATGATTTAGT 58.302 39.130 11.47 0.00 0.00 2.24
53 54 6.769608 TTAGTGAGCGCATGTATGATTTAG 57.230 37.500 11.47 0.00 0.00 1.85
54 55 7.154656 AGATTAGTGAGCGCATGTATGATTTA 58.845 34.615 11.47 0.00 0.00 1.40
55 56 5.994054 AGATTAGTGAGCGCATGTATGATTT 59.006 36.000 11.47 0.00 0.00 2.17
56 57 5.545588 AGATTAGTGAGCGCATGTATGATT 58.454 37.500 11.47 0.00 0.00 2.57
57 58 5.144692 AGATTAGTGAGCGCATGTATGAT 57.855 39.130 11.47 0.00 0.00 2.45
58 59 4.590850 AGATTAGTGAGCGCATGTATGA 57.409 40.909 11.47 0.00 0.00 2.15
59 60 4.987285 AGAAGATTAGTGAGCGCATGTATG 59.013 41.667 11.47 0.00 0.00 2.39
60 61 4.987285 CAGAAGATTAGTGAGCGCATGTAT 59.013 41.667 11.47 0.00 0.00 2.29
61 62 4.363138 CAGAAGATTAGTGAGCGCATGTA 58.637 43.478 11.47 0.00 0.00 2.29
62 63 3.193263 CAGAAGATTAGTGAGCGCATGT 58.807 45.455 11.47 0.00 0.00 3.21
63 64 2.543012 CCAGAAGATTAGTGAGCGCATG 59.457 50.000 11.47 0.00 0.00 4.06
64 65 2.484417 CCCAGAAGATTAGTGAGCGCAT 60.484 50.000 11.47 0.00 0.00 4.73
65 66 1.134699 CCCAGAAGATTAGTGAGCGCA 60.135 52.381 11.47 0.00 0.00 6.09
66 67 1.137086 TCCCAGAAGATTAGTGAGCGC 59.863 52.381 0.00 0.00 0.00 5.92
67 68 3.526931 TTCCCAGAAGATTAGTGAGCG 57.473 47.619 0.00 0.00 0.00 5.03
68 69 6.765915 ATTTTTCCCAGAAGATTAGTGAGC 57.234 37.500 0.00 0.00 0.00 4.26
69 70 7.414540 CCGAATTTTTCCCAGAAGATTAGTGAG 60.415 40.741 0.00 0.00 0.00 3.51
70 71 6.374333 CCGAATTTTTCCCAGAAGATTAGTGA 59.626 38.462 0.00 0.00 0.00 3.41
71 72 6.555315 CCGAATTTTTCCCAGAAGATTAGTG 58.445 40.000 0.00 0.00 0.00 2.74
72 73 5.125578 GCCGAATTTTTCCCAGAAGATTAGT 59.874 40.000 0.00 0.00 0.00 2.24
73 74 5.358160 AGCCGAATTTTTCCCAGAAGATTAG 59.642 40.000 0.00 0.00 0.00 1.73
74 75 5.261216 AGCCGAATTTTTCCCAGAAGATTA 58.739 37.500 0.00 0.00 0.00 1.75
75 76 4.089361 AGCCGAATTTTTCCCAGAAGATT 58.911 39.130 0.00 0.00 0.00 2.40
76 77 3.696548 GAGCCGAATTTTTCCCAGAAGAT 59.303 43.478 0.00 0.00 0.00 2.40
77 78 3.081804 GAGCCGAATTTTTCCCAGAAGA 58.918 45.455 0.00 0.00 0.00 2.87
78 79 2.819608 TGAGCCGAATTTTTCCCAGAAG 59.180 45.455 0.00 0.00 0.00 2.85
79 80 2.870175 TGAGCCGAATTTTTCCCAGAA 58.130 42.857 0.00 0.00 0.00 3.02
80 81 2.577606 TGAGCCGAATTTTTCCCAGA 57.422 45.000 0.00 0.00 0.00 3.86
81 82 3.731867 CGATTGAGCCGAATTTTTCCCAG 60.732 47.826 0.00 0.00 0.00 4.45
82 83 2.163412 CGATTGAGCCGAATTTTTCCCA 59.837 45.455 0.00 0.00 0.00 4.37
83 84 2.479560 CCGATTGAGCCGAATTTTTCCC 60.480 50.000 0.00 0.00 0.00 3.97
84 85 2.422127 TCCGATTGAGCCGAATTTTTCC 59.578 45.455 0.00 0.00 0.00 3.13
85 86 3.685058 CTCCGATTGAGCCGAATTTTTC 58.315 45.455 0.00 0.00 33.47 2.29
86 87 3.764885 CTCCGATTGAGCCGAATTTTT 57.235 42.857 0.00 0.00 33.47 1.94
96 97 3.012518 ACAATCCTTTGCTCCGATTGAG 58.987 45.455 14.17 0.00 43.58 3.02
97 98 2.749076 CACAATCCTTTGCTCCGATTGA 59.251 45.455 14.17 0.00 43.58 2.57
98 99 2.749076 TCACAATCCTTTGCTCCGATTG 59.251 45.455 7.32 7.32 45.40 2.67
99 100 3.071874 TCACAATCCTTTGCTCCGATT 57.928 42.857 0.00 0.00 36.22 3.34
100 101 2.787473 TCACAATCCTTTGCTCCGAT 57.213 45.000 0.00 0.00 36.22 4.18
101 102 2.559698 TTCACAATCCTTTGCTCCGA 57.440 45.000 0.00 0.00 36.22 4.55
102 103 3.855689 ATTTCACAATCCTTTGCTCCG 57.144 42.857 0.00 0.00 36.22 4.63
103 104 4.925646 GTCAATTTCACAATCCTTTGCTCC 59.074 41.667 0.00 0.00 36.22 4.70
104 105 5.531634 TGTCAATTTCACAATCCTTTGCTC 58.468 37.500 0.00 0.00 36.22 4.26
105 106 5.534207 TGTCAATTTCACAATCCTTTGCT 57.466 34.783 0.00 0.00 36.22 3.91
106 107 7.977853 AGATATGTCAATTTCACAATCCTTTGC 59.022 33.333 0.00 0.00 36.22 3.68
109 110 9.911788 ACTAGATATGTCAATTTCACAATCCTT 57.088 29.630 0.00 0.00 0.00 3.36
110 111 9.911788 AACTAGATATGTCAATTTCACAATCCT 57.088 29.630 0.00 0.00 0.00 3.24
111 112 9.941664 CAACTAGATATGTCAATTTCACAATCC 57.058 33.333 0.00 0.00 0.00 3.01
112 113 9.941664 CCAACTAGATATGTCAATTTCACAATC 57.058 33.333 0.00 0.00 0.00 2.67
113 114 8.408601 GCCAACTAGATATGTCAATTTCACAAT 58.591 33.333 0.00 0.00 0.00 2.71
114 115 7.611467 AGCCAACTAGATATGTCAATTTCACAA 59.389 33.333 0.00 0.00 0.00 3.33
115 116 7.066163 CAGCCAACTAGATATGTCAATTTCACA 59.934 37.037 0.00 0.00 0.00 3.58
116 117 7.412853 CAGCCAACTAGATATGTCAATTTCAC 58.587 38.462 0.00 0.00 0.00 3.18
117 118 6.038603 GCAGCCAACTAGATATGTCAATTTCA 59.961 38.462 0.00 0.00 0.00 2.69
118 119 6.261826 AGCAGCCAACTAGATATGTCAATTTC 59.738 38.462 0.00 0.00 0.00 2.17
119 120 6.039047 CAGCAGCCAACTAGATATGTCAATTT 59.961 38.462 0.00 0.00 0.00 1.82
120 121 5.530171 CAGCAGCCAACTAGATATGTCAATT 59.470 40.000 0.00 0.00 0.00 2.32
121 122 5.061853 CAGCAGCCAACTAGATATGTCAAT 58.938 41.667 0.00 0.00 0.00 2.57
122 123 4.162131 TCAGCAGCCAACTAGATATGTCAA 59.838 41.667 0.00 0.00 0.00 3.18
123 124 3.706086 TCAGCAGCCAACTAGATATGTCA 59.294 43.478 0.00 0.00 0.00 3.58
124 125 4.327982 TCAGCAGCCAACTAGATATGTC 57.672 45.455 0.00 0.00 0.00 3.06
125 126 4.102210 ACATCAGCAGCCAACTAGATATGT 59.898 41.667 0.00 0.00 0.00 2.29
126 127 4.451435 CACATCAGCAGCCAACTAGATATG 59.549 45.833 0.00 0.00 0.00 1.78
127 128 4.504514 CCACATCAGCAGCCAACTAGATAT 60.505 45.833 0.00 0.00 0.00 1.63
128 129 3.181462 CCACATCAGCAGCCAACTAGATA 60.181 47.826 0.00 0.00 0.00 1.98
129 130 2.421107 CCACATCAGCAGCCAACTAGAT 60.421 50.000 0.00 0.00 0.00 1.98
130 131 1.065926 CCACATCAGCAGCCAACTAGA 60.066 52.381 0.00 0.00 0.00 2.43
131 132 1.376543 CCACATCAGCAGCCAACTAG 58.623 55.000 0.00 0.00 0.00 2.57
132 133 0.677731 GCCACATCAGCAGCCAACTA 60.678 55.000 0.00 0.00 0.00 2.24
133 134 1.975407 GCCACATCAGCAGCCAACT 60.975 57.895 0.00 0.00 0.00 3.16
134 135 2.570181 GCCACATCAGCAGCCAAC 59.430 61.111 0.00 0.00 0.00 3.77
135 136 2.677524 GGCCACATCAGCAGCCAA 60.678 61.111 0.00 0.00 45.07 4.52
139 140 1.526575 AAAACCGGCCACATCAGCAG 61.527 55.000 0.00 0.00 0.00 4.24
140 141 1.112315 AAAAACCGGCCACATCAGCA 61.112 50.000 0.00 0.00 0.00 4.41
141 142 1.665442 AAAAACCGGCCACATCAGC 59.335 52.632 0.00 0.00 0.00 4.26
156 157 2.166829 AGTGCATCGGTGGCATAAAAA 58.833 42.857 0.00 0.00 44.11 1.94
157 158 1.832883 AGTGCATCGGTGGCATAAAA 58.167 45.000 0.00 0.00 44.11 1.52
158 159 1.832883 AAGTGCATCGGTGGCATAAA 58.167 45.000 0.00 0.00 44.11 1.40
159 160 2.285083 GTAAGTGCATCGGTGGCATAA 58.715 47.619 0.00 0.00 44.11 1.90
160 161 1.208293 TGTAAGTGCATCGGTGGCATA 59.792 47.619 0.00 0.00 44.11 3.14
161 162 0.035534 TGTAAGTGCATCGGTGGCAT 60.036 50.000 0.00 0.00 44.11 4.40
162 163 0.035534 ATGTAAGTGCATCGGTGGCA 60.036 50.000 0.00 0.00 39.32 4.92
163 164 1.597663 GTATGTAAGTGCATCGGTGGC 59.402 52.381 0.00 0.00 0.00 5.01
164 165 2.866156 CAGTATGTAAGTGCATCGGTGG 59.134 50.000 0.00 0.00 0.00 4.61
165 166 2.866156 CCAGTATGTAAGTGCATCGGTG 59.134 50.000 0.00 0.00 0.00 4.94
166 167 2.764010 TCCAGTATGTAAGTGCATCGGT 59.236 45.455 0.00 0.00 0.00 4.69
167 168 3.123804 GTCCAGTATGTAAGTGCATCGG 58.876 50.000 0.00 0.00 0.00 4.18
168 169 3.123804 GGTCCAGTATGTAAGTGCATCG 58.876 50.000 0.00 0.00 0.00 3.84
169 170 3.118408 TGGGTCCAGTATGTAAGTGCATC 60.118 47.826 0.00 0.00 0.00 3.91
170 171 2.843730 TGGGTCCAGTATGTAAGTGCAT 59.156 45.455 0.00 0.00 0.00 3.96
171 172 2.027561 GTGGGTCCAGTATGTAAGTGCA 60.028 50.000 0.00 0.00 0.00 4.57
172 173 2.236395 AGTGGGTCCAGTATGTAAGTGC 59.764 50.000 0.00 0.00 0.00 4.40
173 174 4.253685 CAAGTGGGTCCAGTATGTAAGTG 58.746 47.826 0.00 0.00 0.00 3.16
174 175 3.908103 ACAAGTGGGTCCAGTATGTAAGT 59.092 43.478 0.00 0.00 0.00 2.24
175 176 4.020573 TGACAAGTGGGTCCAGTATGTAAG 60.021 45.833 0.00 0.00 36.97 2.34
176 177 3.904965 TGACAAGTGGGTCCAGTATGTAA 59.095 43.478 0.00 0.00 36.97 2.41
177 178 3.512496 TGACAAGTGGGTCCAGTATGTA 58.488 45.455 0.00 0.00 36.97 2.29
178 179 2.334977 TGACAAGTGGGTCCAGTATGT 58.665 47.619 0.00 5.35 36.97 2.29
179 180 3.055167 TCATGACAAGTGGGTCCAGTATG 60.055 47.826 0.00 0.00 36.97 2.39
180 181 3.181329 TCATGACAAGTGGGTCCAGTAT 58.819 45.455 0.00 0.00 36.97 2.12
181 182 2.615391 TCATGACAAGTGGGTCCAGTA 58.385 47.619 0.00 0.00 36.97 2.74
182 183 1.434188 TCATGACAAGTGGGTCCAGT 58.566 50.000 0.00 0.00 36.97 4.00
183 184 2.566833 TTCATGACAAGTGGGTCCAG 57.433 50.000 0.00 0.00 36.97 3.86
184 185 2.374839 TGATTCATGACAAGTGGGTCCA 59.625 45.455 0.00 0.00 36.97 4.02
185 186 3.071874 TGATTCATGACAAGTGGGTCC 57.928 47.619 0.00 0.00 36.97 4.46
186 187 4.012374 ACATGATTCATGACAAGTGGGTC 58.988 43.478 28.81 0.00 43.81 4.46
187 188 4.012374 GACATGATTCATGACAAGTGGGT 58.988 43.478 28.81 6.94 43.81 4.51
188 189 4.267536 AGACATGATTCATGACAAGTGGG 58.732 43.478 28.81 3.83 43.81 4.61
189 190 6.372381 TGTTAGACATGATTCATGACAAGTGG 59.628 38.462 28.81 4.50 43.81 4.00
190 191 7.095102 TGTGTTAGACATGATTCATGACAAGTG 60.095 37.037 28.81 6.63 43.81 3.16
191 192 6.936335 TGTGTTAGACATGATTCATGACAAGT 59.064 34.615 28.81 12.45 43.81 3.16
192 193 7.239271 GTGTGTTAGACATGATTCATGACAAG 58.761 38.462 28.81 6.52 43.81 3.16
193 194 6.149308 GGTGTGTTAGACATGATTCATGACAA 59.851 38.462 28.81 17.01 43.81 3.18
194 195 5.643348 GGTGTGTTAGACATGATTCATGACA 59.357 40.000 28.81 20.02 43.81 3.58
195 196 5.877012 AGGTGTGTTAGACATGATTCATGAC 59.123 40.000 28.81 23.09 43.81 3.06
196 197 6.053632 AGGTGTGTTAGACATGATTCATGA 57.946 37.500 28.81 7.89 43.81 3.07
197 198 7.848223 TTAGGTGTGTTAGACATGATTCATG 57.152 36.000 22.22 22.22 46.18 3.07
198 199 8.896744 CATTTAGGTGTGTTAGACATGATTCAT 58.103 33.333 0.00 0.00 36.78 2.57
199 200 8.100164 TCATTTAGGTGTGTTAGACATGATTCA 58.900 33.333 0.00 0.00 36.78 2.57
200 201 8.492673 TCATTTAGGTGTGTTAGACATGATTC 57.507 34.615 0.00 0.00 36.78 2.52
201 202 8.896744 CATCATTTAGGTGTGTTAGACATGATT 58.103 33.333 0.00 0.00 36.78 2.57
202 203 8.267183 TCATCATTTAGGTGTGTTAGACATGAT 58.733 33.333 0.00 0.00 36.78 2.45
203 204 7.619965 TCATCATTTAGGTGTGTTAGACATGA 58.380 34.615 0.00 0.00 36.78 3.07
204 205 7.848223 TCATCATTTAGGTGTGTTAGACATG 57.152 36.000 0.00 0.00 36.78 3.21
205 206 9.466497 AAATCATCATTTAGGTGTGTTAGACAT 57.534 29.630 0.00 0.00 31.52 3.06
206 207 8.862325 AAATCATCATTTAGGTGTGTTAGACA 57.138 30.769 0.00 0.00 29.81 3.41
210 211 9.093970 CGTCTAAATCATCATTTAGGTGTGTTA 57.906 33.333 8.97 0.00 46.49 2.41
211 212 7.606456 ACGTCTAAATCATCATTTAGGTGTGTT 59.394 33.333 8.97 0.00 46.49 3.32
212 213 7.103641 ACGTCTAAATCATCATTTAGGTGTGT 58.896 34.615 8.97 1.34 46.49 3.72
213 214 7.539712 ACGTCTAAATCATCATTTAGGTGTG 57.460 36.000 8.97 0.82 46.49 3.82
214 215 9.477484 GATACGTCTAAATCATCATTTAGGTGT 57.523 33.333 8.97 9.75 46.49 4.16
215 216 9.698309 AGATACGTCTAAATCATCATTTAGGTG 57.302 33.333 8.97 5.00 46.49 4.00
216 217 9.698309 CAGATACGTCTAAATCATCATTTAGGT 57.302 33.333 8.97 3.43 46.49 3.08
217 218 8.651588 GCAGATACGTCTAAATCATCATTTAGG 58.348 37.037 8.97 0.00 46.49 2.69
219 220 9.541143 TTGCAGATACGTCTAAATCATCATTTA 57.459 29.630 0.00 0.00 33.95 1.40
220 221 8.338259 GTTGCAGATACGTCTAAATCATCATTT 58.662 33.333 0.00 0.00 36.18 2.32
221 222 7.306807 CGTTGCAGATACGTCTAAATCATCATT 60.307 37.037 0.00 0.00 34.47 2.57
222 223 6.144563 CGTTGCAGATACGTCTAAATCATCAT 59.855 38.462 0.00 0.00 34.47 2.45
223 224 5.458779 CGTTGCAGATACGTCTAAATCATCA 59.541 40.000 0.00 0.00 34.47 3.07
224 225 5.685954 TCGTTGCAGATACGTCTAAATCATC 59.314 40.000 9.08 0.00 39.84 2.92
225 226 5.588240 TCGTTGCAGATACGTCTAAATCAT 58.412 37.500 9.08 0.00 39.84 2.45
226 227 4.989044 TCGTTGCAGATACGTCTAAATCA 58.011 39.130 9.08 0.00 39.84 2.57
227 228 5.035443 ACTCGTTGCAGATACGTCTAAATC 58.965 41.667 9.08 0.00 39.84 2.17
228 229 4.995124 ACTCGTTGCAGATACGTCTAAAT 58.005 39.130 9.08 0.00 39.84 1.40
229 230 4.430137 ACTCGTTGCAGATACGTCTAAA 57.570 40.909 9.08 0.00 39.84 1.85
230 231 4.430137 AACTCGTTGCAGATACGTCTAA 57.570 40.909 9.08 0.00 39.84 2.10
231 232 4.201851 GGTAACTCGTTGCAGATACGTCTA 60.202 45.833 9.08 0.00 39.84 2.59
232 233 3.427233 GGTAACTCGTTGCAGATACGTCT 60.427 47.826 9.08 0.00 39.84 4.18
233 234 2.850647 GGTAACTCGTTGCAGATACGTC 59.149 50.000 9.08 0.00 39.84 4.34
234 235 2.229543 TGGTAACTCGTTGCAGATACGT 59.770 45.455 9.08 0.00 39.84 3.57
235 236 2.871133 TGGTAACTCGTTGCAGATACG 58.129 47.619 3.00 3.00 40.23 3.06
236 237 8.648097 CATATTATGGTAACTCGTTGCAGATAC 58.352 37.037 0.60 0.00 37.61 2.24
237 238 8.364894 ACATATTATGGTAACTCGTTGCAGATA 58.635 33.333 8.48 0.00 37.61 1.98
238 239 7.171508 CACATATTATGGTAACTCGTTGCAGAT 59.828 37.037 8.48 0.00 37.61 2.90
239 240 6.478673 CACATATTATGGTAACTCGTTGCAGA 59.521 38.462 8.48 0.00 37.61 4.26
240 241 6.292865 CCACATATTATGGTAACTCGTTGCAG 60.293 42.308 8.48 0.00 32.08 4.41
241 242 5.525745 CCACATATTATGGTAACTCGTTGCA 59.474 40.000 8.48 0.00 32.08 4.08
242 243 5.985781 CCACATATTATGGTAACTCGTTGC 58.014 41.667 8.48 0.00 32.08 4.17
253 254 7.063308 GCACAAAAGAAACACCACATATTATGG 59.937 37.037 8.48 1.76 43.43 2.74
254 255 7.598118 TGCACAAAAGAAACACCACATATTATG 59.402 33.333 2.03 2.03 0.00 1.90
255 256 7.665690 TGCACAAAAGAAACACCACATATTAT 58.334 30.769 0.00 0.00 0.00 1.28
256 257 7.043961 TGCACAAAAGAAACACCACATATTA 57.956 32.000 0.00 0.00 0.00 0.98
257 258 5.911752 TGCACAAAAGAAACACCACATATT 58.088 33.333 0.00 0.00 0.00 1.28
258 259 5.528043 TGCACAAAAGAAACACCACATAT 57.472 34.783 0.00 0.00 0.00 1.78
259 260 4.991153 TGCACAAAAGAAACACCACATA 57.009 36.364 0.00 0.00 0.00 2.29
260 261 3.883830 TGCACAAAAGAAACACCACAT 57.116 38.095 0.00 0.00 0.00 3.21
261 262 3.243873 TGTTGCACAAAAGAAACACCACA 60.244 39.130 0.00 0.00 32.14 4.17
262 263 3.321497 TGTTGCACAAAAGAAACACCAC 58.679 40.909 0.00 0.00 32.14 4.16
263 264 3.667497 TGTTGCACAAAAGAAACACCA 57.333 38.095 0.00 0.00 32.14 4.17
266 267 6.975772 GGTATTAGTGTTGCACAAAAGAAACA 59.024 34.615 2.01 0.00 36.74 2.83
267 268 6.975772 TGGTATTAGTGTTGCACAAAAGAAAC 59.024 34.615 2.01 0.00 36.74 2.78
268 269 7.101652 TGGTATTAGTGTTGCACAAAAGAAA 57.898 32.000 2.01 0.00 36.74 2.52
269 270 6.701145 TGGTATTAGTGTTGCACAAAAGAA 57.299 33.333 2.01 0.00 36.74 2.52
270 271 6.701145 TTGGTATTAGTGTTGCACAAAAGA 57.299 33.333 2.01 0.00 36.74 2.52
271 272 8.296713 ACTATTGGTATTAGTGTTGCACAAAAG 58.703 33.333 2.01 0.00 36.74 2.27
272 273 8.172352 ACTATTGGTATTAGTGTTGCACAAAA 57.828 30.769 2.01 0.00 36.74 2.44
273 274 7.753309 ACTATTGGTATTAGTGTTGCACAAA 57.247 32.000 2.01 0.00 36.74 2.83
274 275 8.315482 TCTACTATTGGTATTAGTGTTGCACAA 58.685 33.333 2.01 0.00 36.74 3.33
275 276 7.842982 TCTACTATTGGTATTAGTGTTGCACA 58.157 34.615 2.01 0.00 36.74 4.57
276 277 8.765219 CATCTACTATTGGTATTAGTGTTGCAC 58.235 37.037 0.00 0.00 34.10 4.57
277 278 7.931407 CCATCTACTATTGGTATTAGTGTTGCA 59.069 37.037 0.00 0.00 0.00 4.08
278 279 7.095187 GCCATCTACTATTGGTATTAGTGTTGC 60.095 40.741 0.00 0.00 35.34 4.17
279 280 8.150945 AGCCATCTACTATTGGTATTAGTGTTG 58.849 37.037 0.00 0.00 35.34 3.33
280 281 8.263854 AGCCATCTACTATTGGTATTAGTGTT 57.736 34.615 0.00 0.00 35.34 3.32
281 282 7.857404 AGCCATCTACTATTGGTATTAGTGT 57.143 36.000 0.00 0.00 35.34 3.55
282 283 8.150945 ACAAGCCATCTACTATTGGTATTAGTG 58.849 37.037 0.00 0.00 35.34 2.74
283 284 8.150945 CACAAGCCATCTACTATTGGTATTAGT 58.849 37.037 0.00 0.00 35.34 2.24
284 285 7.118390 GCACAAGCCATCTACTATTGGTATTAG 59.882 40.741 0.00 0.00 35.34 1.73
285 286 6.934645 GCACAAGCCATCTACTATTGGTATTA 59.065 38.462 0.00 0.00 35.34 0.98
286 287 5.765182 GCACAAGCCATCTACTATTGGTATT 59.235 40.000 0.00 0.00 35.34 1.89
287 288 5.163205 TGCACAAGCCATCTACTATTGGTAT 60.163 40.000 0.00 0.00 41.13 2.73
288 289 4.163268 TGCACAAGCCATCTACTATTGGTA 59.837 41.667 0.00 0.00 41.13 3.25
289 290 3.054434 TGCACAAGCCATCTACTATTGGT 60.054 43.478 0.00 0.00 41.13 3.67
290 291 3.544684 TGCACAAGCCATCTACTATTGG 58.455 45.455 0.00 0.00 41.13 3.16
291 292 5.762825 ATTGCACAAGCCATCTACTATTG 57.237 39.130 0.00 0.00 41.13 1.90
292 293 6.183360 GGAAATTGCACAAGCCATCTACTATT 60.183 38.462 0.00 0.00 41.13 1.73
293 294 5.300286 GGAAATTGCACAAGCCATCTACTAT 59.700 40.000 0.00 0.00 41.13 2.12
294 295 4.640201 GGAAATTGCACAAGCCATCTACTA 59.360 41.667 0.00 0.00 41.13 1.82
295 296 3.445096 GGAAATTGCACAAGCCATCTACT 59.555 43.478 0.00 0.00 41.13 2.57
296 297 3.445096 AGGAAATTGCACAAGCCATCTAC 59.555 43.478 0.00 0.00 41.13 2.59
297 298 3.696051 GAGGAAATTGCACAAGCCATCTA 59.304 43.478 0.00 0.00 41.13 1.98
298 299 2.494870 GAGGAAATTGCACAAGCCATCT 59.505 45.455 0.00 0.00 41.13 2.90
299 300 2.231964 TGAGGAAATTGCACAAGCCATC 59.768 45.455 0.00 0.00 41.13 3.51
300 301 2.232941 CTGAGGAAATTGCACAAGCCAT 59.767 45.455 0.00 0.00 41.13 4.40
301 302 1.614903 CTGAGGAAATTGCACAAGCCA 59.385 47.619 0.00 0.00 41.13 4.75
302 303 1.888512 TCTGAGGAAATTGCACAAGCC 59.111 47.619 0.00 0.00 41.13 4.35
303 304 3.863142 ATCTGAGGAAATTGCACAAGC 57.137 42.857 0.00 0.00 42.57 4.01
304 305 7.148918 CGTTTAAATCTGAGGAAATTGCACAAG 60.149 37.037 0.00 0.00 0.00 3.16
305 306 6.640499 CGTTTAAATCTGAGGAAATTGCACAA 59.360 34.615 0.00 0.00 0.00 3.33
306 307 6.148948 CGTTTAAATCTGAGGAAATTGCACA 58.851 36.000 0.00 0.00 0.00 4.57
307 308 5.572896 CCGTTTAAATCTGAGGAAATTGCAC 59.427 40.000 0.00 0.00 0.00 4.57
308 309 5.242838 ACCGTTTAAATCTGAGGAAATTGCA 59.757 36.000 0.00 0.00 0.00 4.08
309 310 5.709966 ACCGTTTAAATCTGAGGAAATTGC 58.290 37.500 0.00 0.00 0.00 3.56
310 311 6.908825 TGACCGTTTAAATCTGAGGAAATTG 58.091 36.000 0.00 0.00 0.00 2.32
311 312 6.349363 GCTGACCGTTTAAATCTGAGGAAATT 60.349 38.462 0.00 0.00 0.00 1.82
312 313 5.123979 GCTGACCGTTTAAATCTGAGGAAAT 59.876 40.000 0.00 0.00 0.00 2.17
313 314 4.454504 GCTGACCGTTTAAATCTGAGGAAA 59.545 41.667 0.00 0.00 0.00 3.13
314 315 4.000988 GCTGACCGTTTAAATCTGAGGAA 58.999 43.478 0.00 0.00 0.00 3.36
315 316 3.596214 GCTGACCGTTTAAATCTGAGGA 58.404 45.455 0.00 0.00 0.00 3.71
316 317 2.348666 CGCTGACCGTTTAAATCTGAGG 59.651 50.000 0.00 0.00 0.00 3.86
317 318 2.222819 GCGCTGACCGTTTAAATCTGAG 60.223 50.000 0.00 0.00 39.71 3.35
318 319 1.730064 GCGCTGACCGTTTAAATCTGA 59.270 47.619 0.00 0.00 39.71 3.27
319 320 1.202031 GGCGCTGACCGTTTAAATCTG 60.202 52.381 7.64 0.00 39.71 2.90
322 323 0.802494 CTGGCGCTGACCGTTTAAAT 59.198 50.000 7.64 0.00 39.71 1.40
337 338 1.620819 ACGTAGATCATGGATCCTGGC 59.379 52.381 14.23 5.35 39.66 4.85
340 341 2.630098 CCACACGTAGATCATGGATCCT 59.370 50.000 14.23 0.00 39.66 3.24
352 353 1.076533 GTCGGTGATGCCACACGTAG 61.077 60.000 0.00 0.00 44.93 3.51
372 373 1.832912 GTCCCTGCTCGGATGGATT 59.167 57.895 0.00 0.00 33.48 3.01
403 404 0.179056 CTGTTCCGGTGTGTCAGGTT 60.179 55.000 0.00 0.00 33.18 3.50
427 428 2.664851 TGCCAGGTTGCTTCGTCG 60.665 61.111 0.00 0.00 0.00 5.12
439 440 0.976641 TGGACAGAGTAACCTGCCAG 59.023 55.000 0.00 0.00 36.31 4.85
461 476 4.803098 AGAGTAACTAAACGATGCCTGT 57.197 40.909 0.00 0.00 0.00 4.00
470 485 8.749192 GCAATTAATGCGTAGAGTAACTAAAC 57.251 34.615 0.00 0.00 46.87 2.01
536 551 1.586154 ATGGTTGCGCCTTTCTTCGG 61.586 55.000 4.18 0.00 38.35 4.30
559 574 0.944311 ACTTCACCGTAGTTGCTGCG 60.944 55.000 0.00 0.00 39.17 5.18
564 579 5.236478 ACTTCATTTGACTTCACCGTAGTTG 59.764 40.000 0.00 0.00 0.00 3.16
565 580 5.236478 CACTTCATTTGACTTCACCGTAGTT 59.764 40.000 0.00 0.00 0.00 2.24
583 598 1.669115 GCGCAGAGCTTCCACTTCA 60.669 57.895 0.30 0.00 44.04 3.02
638 653 1.872388 TTTCGGTGCAGACAAATCGA 58.128 45.000 0.00 0.00 0.00 3.59
639 654 2.307049 GTTTTCGGTGCAGACAAATCG 58.693 47.619 0.00 0.00 0.00 3.34
645 660 0.951558 ATGTGGTTTTCGGTGCAGAC 59.048 50.000 0.00 0.00 0.00 3.51
646 661 1.202758 AGATGTGGTTTTCGGTGCAGA 60.203 47.619 0.00 0.00 0.00 4.26
674 689 7.739498 TGGAAAGTGTGATGATATGATGATG 57.261 36.000 0.00 0.00 0.00 3.07
700 715 6.648879 TTTTTCTTTCTTGGGATTCATCGT 57.351 33.333 0.00 0.00 0.00 3.73
736 751 4.023707 GCTTGCTGTCATTTTGTCTGTACT 60.024 41.667 0.00 0.00 0.00 2.73
737 752 4.222114 GCTTGCTGTCATTTTGTCTGTAC 58.778 43.478 0.00 0.00 0.00 2.90
738 753 3.882288 TGCTTGCTGTCATTTTGTCTGTA 59.118 39.130 0.00 0.00 0.00 2.74
763 778 1.005394 GGGCGTCTCGGAAGTTCAA 60.005 57.895 5.01 0.00 0.00 2.69
802 817 2.822255 GCGCGGCCAAACCAGATA 60.822 61.111 8.83 0.00 39.03 1.98
825 840 0.819259 GCCAGTTGACCTGACAAGCA 60.819 55.000 0.00 0.00 44.49 3.91
829 844 0.465460 GGTTGCCAGTTGACCTGACA 60.465 55.000 0.00 0.00 44.49 3.58
833 848 2.113139 CCGGTTGCCAGTTGACCT 59.887 61.111 0.00 0.00 0.00 3.85
845 860 2.597510 GGCTCTGTTTGCCCGGTT 60.598 61.111 0.00 0.00 44.32 4.44
913 928 8.930760 GCACTATACTAGCTAAATTCAGAATGG 58.069 37.037 0.00 0.00 36.16 3.16
922 937 6.821388 AGCACAAGCACTATACTAGCTAAAT 58.179 36.000 0.00 0.00 45.49 1.40
930 945 7.287005 TGGTAGTATAAGCACAAGCACTATACT 59.713 37.037 18.12 18.12 45.97 2.12
931 946 7.431249 TGGTAGTATAAGCACAAGCACTATAC 58.569 38.462 0.00 0.00 45.49 1.47
932 947 7.255836 CCTGGTAGTATAAGCACAAGCACTATA 60.256 40.741 0.00 0.00 45.49 1.31
952 967 2.963101 CAAGGTGTATCGATCCCTGGTA 59.037 50.000 0.00 0.00 0.00 3.25
955 970 1.762957 ACCAAGGTGTATCGATCCCTG 59.237 52.381 0.00 0.00 0.00 4.45
965 980 3.935818 TTTCCTGTCAACCAAGGTGTA 57.064 42.857 0.00 0.00 0.00 2.90
973 988 8.561738 TCTGACTAATAATTTTCCTGTCAACC 57.438 34.615 0.00 0.00 33.47 3.77
1215 1242 4.760047 ATCACGCCCTGCACGACC 62.760 66.667 1.86 0.00 0.00 4.79
1245 1272 0.630673 TGTAGCCCCTGGATTTGCAT 59.369 50.000 0.00 0.00 0.00 3.96
1302 1329 0.871722 CGAGAGAGATCTACGGGCAG 59.128 60.000 0.00 0.00 0.00 4.85
1308 1335 3.332034 GGAGTAGGCGAGAGAGATCTAC 58.668 54.545 0.00 0.00 0.00 2.59
1311 1338 1.153353 CGGAGTAGGCGAGAGAGATC 58.847 60.000 0.00 0.00 0.00 2.75
1314 1341 4.544001 ACGGAGTAGGCGAGAGAG 57.456 61.111 0.00 0.00 41.94 3.20
1349 1378 7.824779 AGTTTAAGACTGAGCAGGTTAATTAGG 59.175 37.037 2.20 0.00 37.17 2.69
1357 1386 4.573900 CATGAGTTTAAGACTGAGCAGGT 58.426 43.478 2.20 0.00 39.19 4.00
1442 1557 0.249322 CGTCACGTTCACCACCTTCT 60.249 55.000 0.00 0.00 0.00 2.85
1481 1596 0.811616 CATCACCAGGAAGTAGCCGC 60.812 60.000 0.00 0.00 0.00 6.53
1787 1902 6.617879 CACAACACTGTCAATCATGAATCAT 58.382 36.000 0.00 0.00 37.30 2.45
1788 1903 5.563280 GCACAACACTGTCAATCATGAATCA 60.563 40.000 0.00 0.00 37.30 2.57
1789 1904 4.855388 GCACAACACTGTCAATCATGAATC 59.145 41.667 0.00 0.00 37.30 2.52
1790 1905 4.521639 AGCACAACACTGTCAATCATGAAT 59.478 37.500 0.00 0.00 37.30 2.57
1791 1906 3.884693 AGCACAACACTGTCAATCATGAA 59.115 39.130 0.00 0.00 37.30 2.57
1792 1907 3.479489 AGCACAACACTGTCAATCATGA 58.521 40.909 0.00 0.00 31.64 3.07
1793 1908 3.909776 AGCACAACACTGTCAATCATG 57.090 42.857 0.00 0.00 31.64 3.07
1839 1954 2.688507 CTGCTAGGAACACGAACACAT 58.311 47.619 0.00 0.00 0.00 3.21
1908 2029 5.734786 GCTCAAGATACTAGCACTACACTGG 60.735 48.000 0.00 0.00 36.26 4.00
1932 2053 1.528129 GGAACAGAGGCCACTGAAAG 58.472 55.000 33.40 10.29 40.63 2.62
1956 2077 6.258727 CGTTGGCAGAAGAATCATAGTTATGT 59.741 38.462 0.00 0.00 35.26 2.29
2082 2204 5.013704 TGGCTATTACCTTTGACTTCCAAGA 59.986 40.000 0.00 0.00 35.94 3.02
2116 2238 7.012044 ACTCCATTTCGCAGTATAAAATACCAC 59.988 37.037 0.00 0.00 0.00 4.16
2123 2245 8.635328 TCATAGTACTCCATTTCGCAGTATAAA 58.365 33.333 0.00 0.00 0.00 1.40
2198 2872 1.226717 GTGGTAGCGCTTCCGAGAG 60.227 63.158 25.55 0.00 36.29 3.20
2199 2873 2.882876 GTGGTAGCGCTTCCGAGA 59.117 61.111 25.55 7.98 36.29 4.04
2273 2947 4.549489 GCCGAAATCGTATCGTTAGGTTTG 60.549 45.833 1.79 0.00 38.60 2.93
2277 2951 2.056577 GGCCGAAATCGTATCGTTAGG 58.943 52.381 1.79 0.00 38.60 2.69
2293 2967 2.564771 TCTGAGCAATTTATCTGGCCG 58.435 47.619 0.00 0.00 0.00 6.13
2302 2976 7.756722 CGGTAAAAATCAGAATCTGAGCAATTT 59.243 33.333 18.49 16.26 44.08 1.82
2304 2978 6.599244 TCGGTAAAAATCAGAATCTGAGCAAT 59.401 34.615 18.49 7.68 44.08 3.56
2307 2981 6.610741 ATCGGTAAAAATCAGAATCTGAGC 57.389 37.500 18.49 3.08 44.08 4.26
2308 2982 9.282247 CAAAATCGGTAAAAATCAGAATCTGAG 57.718 33.333 18.49 2.59 44.08 3.35
2309 2983 8.792633 ACAAAATCGGTAAAAATCAGAATCTGA 58.207 29.630 15.97 15.97 44.99 3.27
2310 2984 8.853345 CACAAAATCGGTAAAAATCAGAATCTG 58.147 33.333 3.38 3.38 0.00 2.90
2311 2985 8.792633 TCACAAAATCGGTAAAAATCAGAATCT 58.207 29.630 0.00 0.00 0.00 2.40
2319 2994 5.722021 AGGCTCACAAAATCGGTAAAAAT 57.278 34.783 0.00 0.00 0.00 1.82
2383 3059 8.711457 CATCTTTTAAATTTGGAAACTGCGAAT 58.289 29.630 0.00 0.00 0.00 3.34
2580 3258 2.706555 TGTGCGTACAGTTCTCTCTG 57.293 50.000 0.82 0.00 40.80 3.35
2583 3261 2.135933 GCTTTGTGCGTACAGTTCTCT 58.864 47.619 6.41 0.00 38.23 3.10
2605 3283 1.784525 CCCGATCCACTTTAGCGATC 58.215 55.000 0.00 0.00 0.00 3.69
2617 3295 1.523938 GTAACTGCAGGCCCGATCC 60.524 63.158 19.93 0.00 0.00 3.36
2645 3323 1.068610 TGCGGCAAATTGTCTAGCAAC 60.069 47.619 0.00 0.00 40.28 4.17
2671 3349 1.043116 CGGGGAGCTCCTATGTCACA 61.043 60.000 31.36 0.00 35.95 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.