>input_sequence_70536
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------------------------------------------------------ATGAGGAGCTCCGCGGCTGTAGTCCG
GGCGGCACTGCTCGTCCTTGGCGCGCTGCTACTCCCTGCCCACCATGTGATGGCCGACTACTCGGCCGTGGCACCGACGC
CCCCG------------CCGCCTAAGCCGGCCAGTGCCATTTCCAAGCCCCCGTTGCCAGCCAATGACACCAACATGTCG
CCGTCCCCGTCGCCGCCTGTCCAGCCGGTGCCACCTTTCGTGGTCGTGCAGGGCGTGATCTACTGCAAGTCATGCAAATC
CAGGGGCTACAACCGCGGCATGGACGCCTCACCGATCCAAGGTTCGCACTGCCCGTAGATC--TCTCTCGCCTACTCCGT
CGCCTCGGCATGGAGTACCTAATTAACCTGCTCAGTCTTAAACTCATGCGTGCATGCATCCATTCGATCCATAAAC----
---------------------------------------GCAGG------------------------------------
-------TGCAACGGTGAATCTGGTGTGCTACGGGAAGAAGGTGGTGAACGTGACGGCGACGGTGTCGGACGAGCGCGGC
TACTTCCTGGTGATGTTCTACGACCTGGCCAACTTCAACGCGCGCAACTGCAAGCTGTACCTGGGCACGTCGCCGACGCC
GCTCTGCGACAAGCCCGTCTACCCGCCGAACAAGTGGATCGGGCTCTCGCTCGTCAAAGAGACCGTCACCTCGCCGCCGG
CGGGGCTGCAGGGCGTCTACTGCCCCACCAGCGTCCTCTTCTACGGCCCCTCCGCCGGACAGCATTGCCCATTTTATTGA
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>chr3A_1_TraesCS3A01G284500
AAAAAAATTTCTTTCAAAATTAAACTTTTTCAAAAAAATGGGGAAATAATCCACTAAATCATACATGCGCTCACTAATCT
TCTGGGAAAAATTCGGCTCAATCGGAGCAAAGGATTGTGAAATTGACATATCTAGTTGGCTGCTGATGTGGCCGGTTTTT
TATGCCACCGATGCACTTACATACTGGACCCACTTGTCATGAATCATGTCTAACACACCTAAATGATGATTTAGACGTAT
CTGCAACGAGTTACCATAATATGTGGTGTTTCTTTTGTGCAACACTAATACCAATAGTAGATGGCTTGTGCAATTTCCTC
AGATTTAAACGGTCAGCGCCAGGATCCATGATCTACGTGTGGCATCACCGACAATCCATCCGAGCAGGGACGCGTCGTGC
TAGAACCTGACACACCGGAACAGAATCCGACGAAGCAACC--------------TGGCAGGTTACTCTGTCCATCACAGG
CATCGTTTAGTTACTCTACGCATTAATTGCCGAGACTAAACAAACTACCCGACGGCATGCGAAGCTGCTGCCGAAGAAAG
GCGCAACCATCATCGCAGCAACTACGGTGAAGTCAAATGAAGTGGAAGCTCTGCGCTTAACCCAAGGAGCCGCGCGCATT
CTCACGAACGGATCGATTTGTCTGCACCGAAAACCACATCTTGAAATTCATCATCATATCATCACACTTTCCAAACGATG
AATCCCAAGAAAGAAAAAAGTTACCGTTGTAGTACAGACAAAATGACAGCAAGCAGATTGAACTTCCGAGACGCCCTCTG
CATTAACTGTGAACGGTATCTGGTTTGGCCGCGCCGCGCTGCTTGTCAGGTCAACTGGCAACCGGGCAAACAGAGCCCAC
GCCCCCTTATAAATTAGCCCGTGGCGGGACACGTCTGATCACCCAGTCCATTCTGAATTTAGCTAGTATAGTGCTTGTGC
TTATACTACCAGGGATCGATACACCTTGGTTGACAGGAAAATTATTAGTCAGAGATGAGGAGCTCCGCGGCTGTAGTCCG
GGCGGCACTGCTCGTCCTTGGCGCGCTGCTACTCCCTGCCCACCATGTGATGGCCGACTACTCGGCCGTGGCACCGACGC
CCCCG------------CCGCCTAAGCCGGCCAGTGCCATTTCCAAGCCCCCGTTGCCAGCCAATGACACCAACATGTCG
CCGTCCCCGTCGCCGCCTGTCCAGCCGGTGCCACCTTTCGTGGTCGTGCAGGGCGTGATCTACTGCAAGTCATGCAAATC
CAGGGGCTACAACCGCGGCATGGACGCCTCACCGATCCAAGGTTCGCACTGCCCGTAGATC--TCTCTCGCCTACTCCGT
CGCCTCGGCATGGAGTACCTAATTAACCTGCTCAGTCTTAAACTCATGCGTGCATGCATCCATTCGATCCATAAAC----
---------------------------------------GCAGG------------------------------------
-------TGCAACGGTGAATCTGGTGTGCTACGGGAAGAAGGTGGTGAACGTGACGGCGACGGTGTCGGACGAGCGCGGC
TACTTCCTGGTGATGTTCTACGACCTGGCCAACTTCAACGCGCGCAACTGCAAGCTGTACCTGGGCACGTCGCCGACGCC
GCTCTGCGACAAGCCCGTCTACCCGCCGAACAAGTGGATCGGGCTCTCGCTCGTCAAAGAGACCGTCACCTCGCCGCCGG
CGGGGCTGCAGGGCGTCTACTGCCCCACCAGCGTCCTCTTCTACGGCCCCTCCGCCGGACAGCATTGCCCATTTTATTGA
CCGCGCCGCCTCGATCCAGCTGGTACTGAGTAATAATCAACTAGTCATATGCAGTTGATGGATGATTCATGATTGACAGT
GTTGTGCTTGCAGTGGTGCATATTTGTGCATTTATGTGTTCGTGTTCCTAGCAGCTA------GCCAATTTACGTTAAGT
TCTTCTAGTTCGTGGGGTTGGTGCAGTTCCAGTGTAGTGCTAGTATCTTGAGCTTTCAGTGGCCTCTGTTCCCCTCACA-
TAACTATGATTCTTCTGCCAACGTGCATTATTTTAAGCTGTTTGACATCTACGGCTGTCGGTTACCACTACACCGTAGAT
CCATGAGCTTAGATCGAGCTCCAAATCACACTAGAAGTGGGAATCTTGGAAGTCAAAGGTAATAGCCACCCTGCGAAGTG
GTATTTTATACT--------------------------------------------------------------------
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----GCGAAATGGAGTACTATGATTCTTCTATAACGTGCATGTATACTCAGATCTTCTATAACGTGCCTGTCTCTCGGAA
GCGCTACCACGGAAATCCCTATATGACGCTCGTTCCGCCAGTTTGTCTACCAAACGCACAAGCCAGCAAACCTAACGATA
CGATTTCGGCCAGATAAATTGCTCA-GATTCTGATTTTTACCGATTTTGTGAGCCTTCTAGAAGGTTCC-TTTTGTTTTA
GTTTACTTTCAAAACAATATTCGCAGTTTCC-AAATTTAAAAGATGTTCACAAATTTTAAAAAAAATGTTACAAACTTTT
GAAATATTCATCATTTAAACAATGTTTACAAAATGCAGAGGAATGTTTATTTTTTCATAAATGTTCACAAAATTTTCAAA
AAAAGTTCACTTTGAAAAATAATT-AAATTGTAAAAATAATATAAACTAAGAAAAAACAGAGAGAACTGTACGCACAAAG
CTGATCGCTAAAGTGGATCGGGCCTGCAGTTACTCATGTGCGGTTGCTAGACAATTTGCCGCATCAAGTGTGACATAGGA
GCTCCCCGCCCACCCACGGTCAAGACTGGCTGGAGAAAGAATA
>chr3B_321
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AGCTTTAAACGGTCAGCTCCCGGATCCATGATTTACGTGTGGCATCACCGACGATCCATCGGA----GGACGCGTCGTGC
TAGCACCTGACACACCGGAACAGAATCTGACGAAGCAACTTGCCAGGTTAACCATGGCATGTTACTCTGTCCAGCTCAGG
CATCCTTTGGTTACTCTACGCATTAATTGCCGGGACTAAACAAACTATCCGACGGCATGCGAAGCTGCTGTCGAAGAAAG
GCGCAACCATCATTGCAGTCACTACGGTGAAGTCAAACGGAGCCGAAGCTCTGCGCTTAACCCAAGCAGCCGCGCGCATT
CTCACGAACGGACAGATTTCGCTGCACCGAAAACCACATCTTGAAATTTATCATCATATCATCACACTTTCCAAGTGATC
AATCCCAAGAAAGAAAAAGGTTACCGTTGT---ACAGACAAAATGACAGCAAGCAGACCGAACTTCCGAGACGCCCTCTG
CATTAACTGTGAACGGAATCTGGTTTGGCCGCGG-GCGCAGCTCGTTGGGTCAACTGGCCACCGGGCAAACAGAGCCCAC
GCCCCCTTATAAATTAGCCCGTGGCGGGACACGTCTGATCACCCAGTTCATTCTGACTTTAGCT---ATAGTGCTTGTGC
TTATACCACTAGGGATCGACACACCTTCGTTGACAGGAAAATTATTAGCCAGAGATGAGGAGCTACGCAGCGGTAGTCCG
GGCGGCACTGCTCGTCCTTGGCGCGCTGCTACTCCCTGCCCACCATGTGATGGCCGACTACTCGGCCATGGCA-------
--CCG------------CCGCCTAAGCCGGCCAGTGCCATTTCCACGCCCCCGTTGCCAGCCAATGACACGAACATGTCG
CCGTT------GCCGCCTGTCCAGCCGATGCCACCTTTCGTCGTCGTGCAGGGCGTGATCTACTGCAAATCTTGCAAATC
CAGGGGCTACAACCGCGGCATGGACGCCTCACCGATCCAAGGTTCGCG-------------------TCACCTACTCCGT
CGCCTTGGCATAGAGTAGCTAATTAGCCTGCTCAGTCTTAATCTCATGCGTGCATGCATCCATTCGATCCATGAACGCAG
GCTGACATTATCTCTACTGCCCGTTTTGGTTTTGTCTTTGCAGG------------------------------------
-------TGCAACGGTGAATCTGGTGTGCTACGGGAGGAAGGTGGTGAACGTGACGGCGACGGTGTCGGACGAGCACGGC
TACTTCCTGGTGATGTTCTACGACCTGGCCAACTTCAACGCGCGCACCTGCAAGCTGTACCTGGGCACGTCGCCGACGCC
GCTCTGCGACAAGCCCGTCTACCCGCCGAACAAGTGGATCGGGCTCTCGCTCGTCAAGGAGACCGTCACCTCGCCGCCGG
TGGGGCTGCAGGGCGTCTACTGCCCCACCAGCGTCCTCTTCTACGGCCCCTCCGCCGGACAGCATTGCCCATTTTATTGA
CCGCGCCGCCTCGATCCAGTTGGTACTGAGTAATAATCAACTAGTCATATGCAGTTGATGG-------ATGATTGACAGT
GTTGTGCTTGCAGTGGTGCATATTTGTGCATTTCTGTGTTCGTGTTCCTAGCAGCTA------GCCAATTTACGTTAAGT
TCTTCTAGTTCGTGGGC-TGGTGCAGTTACAGTGTAGCACTAGTATCTCGAGTTTTGAGTGGCCTCTGTTCCCCTTCCAT
TAACTATGATTCTTCTGCCAACGTGCATTATTTTAAGCTGTTTGACATCTAGGGCTGTCGGTTACCACTGCACCGTAGAT
CCATGAACTTAGATCGAGCTCCAAATCACACTAGAAGTGGGAACATTGGAAGTCAAAGGTAATAGCCACCCTGCGAATTG
GTATATTATACT--------------------------------------------------------------------
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----GCGAAATGGACTACTATGATTCTTCTATAACGTGCCTGTATACTCAGATCTTCTATAACGTGCCTGTACCTCGGAA
GCGCTACCACGGAAATCCCTATATGACGCTCGTTCCGCCAGTTTGTCTACCAAACGCACAAGCCAGAAAAGCTAACGATA
CGATTTGGGCCGGACCATTTAGCTCGGATTCTGCTTTTTACCGATTTTGGGAACCTTCTAGAAGATTCCTTTTTGTTTTA
GTTTACTTTCAAAACAATGTTCGCAGTTTCAAAATTTTAAAAGATGTTCACACATTTTGTTT-AAATGTTACAAACTTTT
AAAATATTCATCATTTAAACAATGTTTACAAAATGCAGAAAATTGTTTATTTTTTCATAAATGTTCACAAAATTTTCAAA
AAATGTTCACTTTGAAAAACATCTAAAATTTTAAAAATAATATAAACTAAGAAAAATTAGGGAGAACCGCAAGCACAAAG
CTTATCGCTAAAGTCGATCGGGCCTGCAGTTACTCATGTGCGATTGCTAGACAATTTGCCGCATCAAGCGTGACATAGGA
GCTCCCCGCCCACCCACGGTCAAGACTGGCTGGAGAAAGAATA
>chr3D_321
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AGCTTTAAACGGTCAGCTCCCGGATCCATGATTTACGTGTGGCATCACCGACTATCCCTCCGA----GGACGCGTCGTGC
TAGCACCTGACACACCGGAACAGAATCTGACGAAGCAACTTGCCAGGTTAACCATGGCATGTTACTCTGTCCATCTCTGG
CATCCTTTGGTTACTGTACGCATTAATTGCCGAGATT----AACCTATCCGACGGGATGCGAAGCTGCGGACGAAGAAAG
GCGCAACCATCATTGCAGTCACTACGGTGAAGTCAAACGAAGCCGAAGCTCTGCGCTTAACCCAAGCAGCCGCGCGCATT
CTCACGAACGGACAGATTTCGCTGCACCGAAAACCACATCTTGAAATTTATCATCATATCATCACACTTTCCAAGTGATC
AATCCCAAGAAAGGAAAAAGTTACCGTTGT---ACAGACAAAATGACAGCAAGCAGACTGAACTTCCGAGACGCCCTCTG
CATTAGCTGTGAATGGAATCTGGTTTGGCCGCGCCGCGCCGCTCGTCCGGTCAACTGGCCACCGGGCAAACAGAGCCCAC
A-CCCCTTATAAATTAGCCCGTGGCCGGGCACTTCTGATCACCCAGTTCATTCTGACTTTAGCT---ATAGTGCTTGTGC
TTATACCACTAGGGATCGACACACCTTCGTTGACAGGAAAATTATTAGTCAGAGATGAGGAGCTACGCAGCTGTAGTCCG
GGCAGCACTACTCGTCCTTGGCGCGCTGCTACTCCCTGCCCACCATGTGATGGCCGACTACTCGGCCATGGCA-------
--CCGGCGCCGCCGCCACCGCCTAAGCCGGCCAGTGCCATTTCCATGCCCCCGTTGCCAGCCAATGACACCAACATGTCG
CCG------------CCTGTCCAGCTGGCGCCACCTTTCGTCGTTGTGCAGGGCGTGATCTACTGTAAGTCCTGCAAATC
CAGGGGCTACAACCGCGGCATGGACGCGTCACCGATCCAAGGTTCGCATTGCCCCTATATATATCTCTCGCCTACTCCGT
CGCCTCGGCATGGGGTAGCTAATTAGCCTGCTCAGTCTTAATCTCATGCGTGCATGCATCCATTCGATCCATAAAC----
---------------------------------------GCAGGCTGACATTATCTCTACTGCCCGTTTTGGTTTTGTCT
TTGCAGGTGCAACGGTGAATCTGGTGTGCTACGGGAGGAAGGTGGTGAACGTGACAGCGACGGTGTCGGACGAGCACGGC
TACTTCCTGGTGATGTTCTACGACCTGGCCAACTTCAACGCGCGCAACTGCAAGATATACCTGGGCACGTCGCCGACGCC
GCTCTGCGACAAGCCCGTCTACCCGCCGAACAAGTGGATCGGGCTCTCGCTCGTCAAAGAGACCGTAACTTCGCCGCCGG
TGGGGCTGCAAGGCGTCTACTGCCCCAGCAGCGTGCTCTTCTACGGCCCCTCCGCCGGACAGCATTGCCCATTTTATTGA
CCGCGCCGCCTCGATCCACCTGGTACTAAGTAATAATCAACTAGTCACC-----------------------TTGGCAGT
TTTGCACTTGCAGTGGTTCGTGTTTGTGTAT-----TGTACGTGTTCCTAGCAGCTTAGATCCGCCAATTTACGTTCAGT
TCTTCTAGTTTGTT-GGTTGGTGCAGTTGCAGTGTAGTGCTAGTATCTTGAGTTTTCAGTGGCCTCCGTTCCCCAC-CA-
TAACTATGATTCTTCTGCCAACGTGCATTATTTTAAGCTGTTTGACATTTACGGCTGTCGGTTGCCACTACACCG-AGAT
CCACGAGCTTAGATCGAGCTCCAATTCACACTTGAAGTGGGAACCTTGGAAGTCAA-GGTAATAGCCACCCTGCGAAAGG
GTATATTATACTCCCTCCGTCTCATAATAAGTATCTCAACTATGTACTAGTTTGGGTATAAAGTTGTATTAAGTTTAAGA
CATTTATTTTGGGACGGATGGAGTACCACATTAACTAAATGACAGTCGACTGAATTTTAAATTGGGGCCAGTCGATTTTG
AGAGTTCACCGGAGTGAGCCGGAGGGATGGAAGGGGCTCGCCGGAGGGCTACCCCATCTATCTTAAGGTTTAAGGTAAGA
GAGGTGATGGACGGCGGTGATGGGGTTTCGCCGGAGAAAAAAACTGGGCGTGGGCGGGGCTAGAGGGTGGCCAGGGGCGG
CAGCAAGACCGGCGGTGGGGAGCGGTTCCGAAAAGAGCGGGCGGCGAGGCTGCGCGAAAGCGCCGCCGGCTGCGGGTGGT
GCTCGCAGGCGGTTCGGCCGGTGGCCTATGCGGCGGCCTGGGAAAGGAGAAGAAGCTGGAGGAAGAAGAAGGGCTGCCCA
TCGTTCAATCTGCATCCAACAGTCATCGACTGACCTAAATTTAAAAATCAATCGACTGACGTGTAGCCATTCCCATATTA
TACTGCAAAATGGAGTGCTATGAT-CTTCCATAACGTGCATGTATACTCAGATCTTCTATAACGTGCTTGT---------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
--S--------------S--S-----------S-------------------S----------SSSS-------------
---S-----------------------S-----------S-------------------S---------------S----
----S---S--------------------------------------S----------------------S---------
-------------S----SS-----------------S----SS----------------------S-------------
------------SS-----SS---------------------------S-------------------------SS---S
------------------------------SSS------------------------S----------------------
----------------S----------------------S---S---S-----------S--------------------
-----------------------------------------------S--------S-------SSS-------------
------S--S---------S-------S------------------------------------S---S-----------
-------------------------------------------------------------------S-----SSSSSSS
SS-------------------------------------------S----------------------------------
----SSSSSSS------------------------------S-----------------------------S--------
------------------------------------------------S-----S--S--S-------------------
-----------------S-------S---------------S--------------------------------------
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------------------------------------S--------------------------------------S----
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S-------------------------------------------------------------------------------
-------------------------------------------------------------SSSSSSS------------
---------------------------------S----------------------------------------------
----------------------------S-----------------------S-----------------------S---
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-------------------------------------------S---------------------------------S--
----S---------------------------------------------------------------------------
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-----------------------------------------------------------------------SS-------
------------------------------------------------------------------S---S---------
------S----S--SS-S--SSSSS--------S---------------S--S-----------S---------------
------------------S-----------S---S-----------------S-----SSSSS-----------------
S--------------------------------------SS-S-------------------------------------
---S---------------S-SS-------S-------------------------SS--S------S-S-S--------
--S-----------S---------------------------S-------------------------S-----------
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>forward_181
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-ATGCCACCGATGCACTTACA-----------------------------------------------------------
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>reverse_1557
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------------------------------------AGAAGGTGGTGAACGTGACG------------------------
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>forward_182
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--TGCCACCGATGCACTTACAT----------------------------------------------------------
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>reverse_1596
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---------------------------------------------------------------------------GCGGC
TACTTCCTGGTGATG-----------------------------------------------------------------
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>forward_384
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--------------------------------------------TCACCGACAATCCATCCGAG----------------
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>reverse_2872
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-----------------------------------------------------------------------CTCTCGGAA
GCGCTACCAC----------------------------------------------------------------------
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