Multiple sequence alignment - TraesCS3A01G279000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G279000 chr3A 100.000 2765 0 0 1 2765 508387219 508384455 0.000000e+00 5107.0
1 TraesCS3A01G279000 chr3A 90.513 390 37 0 304 693 1917926 1918315 1.470000e-142 516.0
2 TraesCS3A01G279000 chr3A 90.561 392 33 4 303 693 611190480 611190868 1.470000e-142 516.0
3 TraesCS3A01G279000 chr3A 90.281 391 34 4 305 693 608139911 608140299 2.460000e-140 508.0
4 TraesCS3A01G279000 chr3B 93.425 1673 77 18 703 2367 503577819 503576172 0.000000e+00 2449.0
5 TraesCS3A01G279000 chr3B 82.000 100 11 7 8 102 1257358 1257455 8.210000e-11 78.7
6 TraesCS3A01G279000 chr3B 82.000 100 11 7 8 102 1434999 1435096 8.210000e-11 78.7
7 TraesCS3A01G279000 chr3D 87.246 541 46 6 2226 2765 387159188 387158670 1.830000e-166 595.0
8 TraesCS3A01G279000 chr3D 97.203 143 2 1 2102 2244 387164127 387163987 9.900000e-60 241.0
9 TraesCS3A01G279000 chr1A 91.094 393 34 1 302 693 581867097 581866705 5.240000e-147 531.0
10 TraesCS3A01G279000 chr1A 87.805 82 7 3 22 102 430237914 430237993 2.930000e-15 93.5
11 TraesCS3A01G279000 chr1A 77.857 140 20 8 26 164 112967756 112967627 2.950000e-10 76.8
12 TraesCS3A01G279000 chr1A 92.453 53 3 1 183 234 581856334 581856282 1.060000e-09 75.0
13 TraesCS3A01G279000 chr7A 90.680 397 35 2 303 697 579566146 579565750 6.780000e-146 527.0
14 TraesCS3A01G279000 chr7A 89.873 395 38 2 301 693 57206013 57206407 8.840000e-140 507.0
15 TraesCS3A01G279000 chr5A 90.281 391 36 2 304 693 570173337 570172948 6.830000e-141 510.0
16 TraesCS3A01G279000 chr7B 90.076 393 37 2 303 693 3362644 3362252 2.460000e-140 508.0
17 TraesCS3A01G279000 chr7B 83.871 93 8 7 10 99 400133661 400133749 6.350000e-12 82.4
18 TraesCS3A01G279000 chr4B 90.051 392 36 3 303 693 302741078 302741467 3.180000e-139 505.0
19 TraesCS3A01G279000 chr7D 76.944 373 76 8 2373 2742 46579195 46579560 1.300000e-48 204.0
20 TraesCS3A01G279000 chr7D 78.916 166 30 5 26 187 593009386 593009222 1.050000e-19 108.0
21 TraesCS3A01G279000 chr2B 84.810 158 23 1 2603 2760 662372000 662371844 1.030000e-34 158.0
22 TraesCS3A01G279000 chr5B 79.874 159 25 5 2508 2665 618151939 618151787 2.910000e-20 110.0
23 TraesCS3A01G279000 chr5B 94.444 54 3 0 181 234 637115826 637115773 1.760000e-12 84.2
24 TraesCS3A01G279000 chrUn 81.739 115 19 2 1 114 56820696 56820583 8.150000e-16 95.3
25 TraesCS3A01G279000 chrUn 96.774 31 1 0 187 217 95516406 95516436 5.000000e-03 52.8
26 TraesCS3A01G279000 chr4D 83.178 107 12 4 1 103 401093921 401093817 2.930000e-15 93.5
27 TraesCS3A01G279000 chr6D 78.667 150 18 12 5 144 91493308 91493453 1.360000e-13 87.9
28 TraesCS3A01G279000 chr2A 97.500 40 1 0 183 222 40495605 40495566 4.940000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G279000 chr3A 508384455 508387219 2764 True 5107 5107 100.000 1 2765 1 chr3A.!!$R1 2764
1 TraesCS3A01G279000 chr3B 503576172 503577819 1647 True 2449 2449 93.425 703 2367 1 chr3B.!!$R1 1664
2 TraesCS3A01G279000 chr3D 387158670 387159188 518 True 595 595 87.246 2226 2765 1 chr3D.!!$R1 539

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
310 311 0.032815 GAGAGTAATGGCGAGAGGGC 59.967 60.0 0.00 0.00 42.69 5.19 F
331 332 0.105862 CCATCTGAACCCATGGGCAT 60.106 55.0 31.73 20.35 36.62 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1380 1382 0.103026 TCTTGATGGAGATGTCGGCG 59.897 55.0 0.00 0.00 0.00 6.46 R
2193 2197 0.512085 CTACCTCGATACGCGACCTC 59.488 60.0 15.93 5.09 45.59 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.611974 AAACGCGTTTTGGAGCTATG 57.388 45.000 30.36 0.00 0.00 2.23
20 21 1.803334 AACGCGTTTTGGAGCTATGA 58.197 45.000 20.79 0.00 0.00 2.15
21 22 2.024176 ACGCGTTTTGGAGCTATGAT 57.976 45.000 5.58 0.00 0.00 2.45
22 23 2.356135 ACGCGTTTTGGAGCTATGATT 58.644 42.857 5.58 0.00 0.00 2.57
23 24 2.747446 ACGCGTTTTGGAGCTATGATTT 59.253 40.909 5.58 0.00 0.00 2.17
24 25 3.181510 ACGCGTTTTGGAGCTATGATTTC 60.182 43.478 5.58 0.00 0.00 2.17
25 26 3.063997 CGCGTTTTGGAGCTATGATTTCT 59.936 43.478 0.00 0.00 0.00 2.52
26 27 4.437390 CGCGTTTTGGAGCTATGATTTCTT 60.437 41.667 0.00 0.00 0.00 2.52
27 28 5.402398 GCGTTTTGGAGCTATGATTTCTTT 58.598 37.500 0.00 0.00 0.00 2.52
28 29 5.863935 GCGTTTTGGAGCTATGATTTCTTTT 59.136 36.000 0.00 0.00 0.00 2.27
29 30 6.366061 GCGTTTTGGAGCTATGATTTCTTTTT 59.634 34.615 0.00 0.00 0.00 1.94
30 31 7.619982 GCGTTTTGGAGCTATGATTTCTTTTTG 60.620 37.037 0.00 0.00 0.00 2.44
31 32 7.513132 GTTTTGGAGCTATGATTTCTTTTTGC 58.487 34.615 0.00 0.00 0.00 3.68
32 33 5.329035 TGGAGCTATGATTTCTTTTTGCC 57.671 39.130 0.00 0.00 0.00 4.52
33 34 4.771577 TGGAGCTATGATTTCTTTTTGCCA 59.228 37.500 0.00 0.00 0.00 4.92
34 35 5.105063 GGAGCTATGATTTCTTTTTGCCAC 58.895 41.667 0.00 0.00 0.00 5.01
35 36 4.737054 AGCTATGATTTCTTTTTGCCACG 58.263 39.130 0.00 0.00 0.00 4.94
36 37 4.458989 AGCTATGATTTCTTTTTGCCACGA 59.541 37.500 0.00 0.00 0.00 4.35
37 38 5.126061 AGCTATGATTTCTTTTTGCCACGAT 59.874 36.000 0.00 0.00 0.00 3.73
38 39 5.807011 GCTATGATTTCTTTTTGCCACGATT 59.193 36.000 0.00 0.00 0.00 3.34
39 40 6.311200 GCTATGATTTCTTTTTGCCACGATTT 59.689 34.615 0.00 0.00 0.00 2.17
40 41 6.710692 ATGATTTCTTTTTGCCACGATTTC 57.289 33.333 0.00 0.00 0.00 2.17
41 42 4.987912 TGATTTCTTTTTGCCACGATTTCC 59.012 37.500 0.00 0.00 0.00 3.13
42 43 4.392921 TTTCTTTTTGCCACGATTTCCA 57.607 36.364 0.00 0.00 0.00 3.53
43 44 3.363341 TCTTTTTGCCACGATTTCCAC 57.637 42.857 0.00 0.00 0.00 4.02
44 45 2.035321 TCTTTTTGCCACGATTTCCACC 59.965 45.455 0.00 0.00 0.00 4.61
45 46 1.403814 TTTTGCCACGATTTCCACCA 58.596 45.000 0.00 0.00 0.00 4.17
46 47 1.403814 TTTGCCACGATTTCCACCAA 58.596 45.000 0.00 0.00 0.00 3.67
47 48 1.626686 TTGCCACGATTTCCACCAAT 58.373 45.000 0.00 0.00 0.00 3.16
48 49 0.887247 TGCCACGATTTCCACCAATG 59.113 50.000 0.00 0.00 0.00 2.82
49 50 0.887933 GCCACGATTTCCACCAATGT 59.112 50.000 0.00 0.00 0.00 2.71
50 51 1.402720 GCCACGATTTCCACCAATGTG 60.403 52.381 0.00 0.00 42.39 3.21
51 52 2.158559 CCACGATTTCCACCAATGTGA 58.841 47.619 0.00 0.00 45.76 3.58
52 53 2.754552 CCACGATTTCCACCAATGTGAT 59.245 45.455 0.00 0.00 45.76 3.06
53 54 3.193267 CCACGATTTCCACCAATGTGATT 59.807 43.478 0.00 0.00 45.76 2.57
54 55 4.321899 CCACGATTTCCACCAATGTGATTT 60.322 41.667 0.00 0.00 45.76 2.17
55 56 4.858692 CACGATTTCCACCAATGTGATTTC 59.141 41.667 0.00 0.00 45.76 2.17
56 57 4.522405 ACGATTTCCACCAATGTGATTTCA 59.478 37.500 0.00 0.00 45.76 2.69
57 58 5.185635 ACGATTTCCACCAATGTGATTTCAT 59.814 36.000 0.00 0.00 45.76 2.57
58 59 5.517411 CGATTTCCACCAATGTGATTTCATG 59.483 40.000 0.00 0.00 45.76 3.07
59 60 6.608539 ATTTCCACCAATGTGATTTCATGA 57.391 33.333 0.00 0.00 45.76 3.07
60 61 6.608539 TTTCCACCAATGTGATTTCATGAT 57.391 33.333 0.00 0.00 45.76 2.45
61 62 5.585820 TCCACCAATGTGATTTCATGATG 57.414 39.130 0.00 0.00 45.76 3.07
62 63 5.262804 TCCACCAATGTGATTTCATGATGA 58.737 37.500 0.00 0.00 45.76 2.92
63 64 5.715753 TCCACCAATGTGATTTCATGATGAA 59.284 36.000 3.29 3.29 45.76 2.57
64 65 6.210984 TCCACCAATGTGATTTCATGATGAAA 59.789 34.615 21.39 21.39 45.76 2.69
65 66 6.311935 CCACCAATGTGATTTCATGATGAAAC 59.688 38.462 21.54 15.45 45.76 2.78
66 67 7.094631 CACCAATGTGATTTCATGATGAAACT 58.905 34.615 21.54 11.58 45.76 2.66
67 68 7.601130 CACCAATGTGATTTCATGATGAAACTT 59.399 33.333 21.54 8.15 45.76 2.66
74 75 5.910637 TTTCATGATGAAACTTTGCAAGC 57.089 34.783 16.04 0.00 41.02 4.01
75 76 4.859304 TCATGATGAAACTTTGCAAGCT 57.141 36.364 0.00 0.00 0.00 3.74
76 77 5.963176 TCATGATGAAACTTTGCAAGCTA 57.037 34.783 0.00 0.00 0.00 3.32
77 78 6.519679 TCATGATGAAACTTTGCAAGCTAT 57.480 33.333 0.00 0.00 0.00 2.97
78 79 6.558009 TCATGATGAAACTTTGCAAGCTATC 58.442 36.000 0.00 0.00 0.00 2.08
79 80 6.376299 TCATGATGAAACTTTGCAAGCTATCT 59.624 34.615 0.00 0.00 0.00 1.98
80 81 7.553760 TCATGATGAAACTTTGCAAGCTATCTA 59.446 33.333 0.00 0.00 0.00 1.98
81 82 7.686438 TGATGAAACTTTGCAAGCTATCTAA 57.314 32.000 0.00 0.00 0.00 2.10
82 83 8.109705 TGATGAAACTTTGCAAGCTATCTAAA 57.890 30.769 0.00 0.00 0.00 1.85
83 84 8.023128 TGATGAAACTTTGCAAGCTATCTAAAC 58.977 33.333 0.00 0.00 0.00 2.01
84 85 7.510549 TGAAACTTTGCAAGCTATCTAAACT 57.489 32.000 0.00 0.00 0.00 2.66
85 86 7.940850 TGAAACTTTGCAAGCTATCTAAACTT 58.059 30.769 0.00 0.00 0.00 2.66
86 87 8.413229 TGAAACTTTGCAAGCTATCTAAACTTT 58.587 29.630 0.00 0.00 0.00 2.66
87 88 9.249457 GAAACTTTGCAAGCTATCTAAACTTTT 57.751 29.630 0.00 0.00 0.00 2.27
88 89 8.803201 AACTTTGCAAGCTATCTAAACTTTTC 57.197 30.769 0.00 0.00 0.00 2.29
89 90 8.171164 ACTTTGCAAGCTATCTAAACTTTTCT 57.829 30.769 0.00 0.00 0.00 2.52
90 91 8.633561 ACTTTGCAAGCTATCTAAACTTTTCTT 58.366 29.630 0.00 0.00 0.00 2.52
109 110 9.503427 CTTTTCTTAAAGTTTTCCACACACTAG 57.497 33.333 0.00 0.00 36.75 2.57
110 111 8.795842 TTTCTTAAAGTTTTCCACACACTAGA 57.204 30.769 0.00 0.00 0.00 2.43
111 112 8.795842 TTCTTAAAGTTTTCCACACACTAGAA 57.204 30.769 0.00 0.00 0.00 2.10
112 113 8.974060 TCTTAAAGTTTTCCACACACTAGAAT 57.026 30.769 0.00 0.00 0.00 2.40
113 114 9.403583 TCTTAAAGTTTTCCACACACTAGAATT 57.596 29.630 0.00 0.00 0.00 2.17
119 120 9.403583 AGTTTTCCACACACTAGAATTTTTAGA 57.596 29.630 0.00 0.00 0.00 2.10
153 154 8.718102 TCTAATTTACTGTTCATGCTAAGACC 57.282 34.615 0.00 0.00 0.00 3.85
154 155 8.318412 TCTAATTTACTGTTCATGCTAAGACCA 58.682 33.333 0.00 0.00 0.00 4.02
155 156 7.944729 AATTTACTGTTCATGCTAAGACCAT 57.055 32.000 0.00 0.00 0.00 3.55
156 157 7.944729 ATTTACTGTTCATGCTAAGACCATT 57.055 32.000 0.00 0.00 0.00 3.16
157 158 6.985188 TTACTGTTCATGCTAAGACCATTC 57.015 37.500 0.00 0.00 0.00 2.67
158 159 4.910195 ACTGTTCATGCTAAGACCATTCA 58.090 39.130 0.00 0.00 0.00 2.57
159 160 5.316167 ACTGTTCATGCTAAGACCATTCAA 58.684 37.500 0.00 0.00 0.00 2.69
160 161 5.413833 ACTGTTCATGCTAAGACCATTCAAG 59.586 40.000 0.00 0.00 0.00 3.02
161 162 4.156556 TGTTCATGCTAAGACCATTCAAGC 59.843 41.667 0.00 0.00 34.90 4.01
162 163 4.226427 TCATGCTAAGACCATTCAAGCT 57.774 40.909 0.00 0.00 35.21 3.74
163 164 4.194640 TCATGCTAAGACCATTCAAGCTC 58.805 43.478 0.00 0.00 35.21 4.09
164 165 3.701205 TGCTAAGACCATTCAAGCTCA 57.299 42.857 0.00 0.00 35.21 4.26
165 166 4.019792 TGCTAAGACCATTCAAGCTCAA 57.980 40.909 0.00 0.00 35.21 3.02
166 167 4.005650 TGCTAAGACCATTCAAGCTCAAG 58.994 43.478 0.00 0.00 35.21 3.02
167 168 4.006319 GCTAAGACCATTCAAGCTCAAGT 58.994 43.478 0.00 0.00 32.73 3.16
168 169 4.457257 GCTAAGACCATTCAAGCTCAAGTT 59.543 41.667 0.00 0.00 32.73 2.66
169 170 4.843220 AAGACCATTCAAGCTCAAGTTG 57.157 40.909 0.00 0.00 0.00 3.16
170 171 4.090761 AGACCATTCAAGCTCAAGTTGA 57.909 40.909 5.25 5.25 31.98 3.18
171 172 4.070716 AGACCATTCAAGCTCAAGTTGAG 58.929 43.478 25.68 25.68 46.90 3.02
172 173 3.152341 ACCATTCAAGCTCAAGTTGAGG 58.848 45.455 29.45 16.26 44.43 3.86
173 174 3.181440 ACCATTCAAGCTCAAGTTGAGGA 60.181 43.478 29.45 17.82 44.43 3.71
174 175 3.822735 CCATTCAAGCTCAAGTTGAGGAA 59.177 43.478 29.45 23.77 44.43 3.36
175 176 4.082895 CCATTCAAGCTCAAGTTGAGGAAG 60.083 45.833 29.45 17.60 44.43 3.46
176 177 3.131709 TCAAGCTCAAGTTGAGGAAGG 57.868 47.619 29.45 9.50 44.43 3.46
177 178 2.439507 TCAAGCTCAAGTTGAGGAAGGT 59.560 45.455 29.45 11.21 44.43 3.50
178 179 3.646162 TCAAGCTCAAGTTGAGGAAGGTA 59.354 43.478 29.45 0.00 44.43 3.08
179 180 3.686916 AGCTCAAGTTGAGGAAGGTAC 57.313 47.619 29.45 13.95 44.43 3.34
180 181 3.243724 AGCTCAAGTTGAGGAAGGTACT 58.756 45.455 29.45 15.75 44.43 2.73
181 182 3.259625 AGCTCAAGTTGAGGAAGGTACTC 59.740 47.826 29.45 12.68 44.43 2.59
182 183 3.259625 GCTCAAGTTGAGGAAGGTACTCT 59.740 47.826 29.45 0.00 44.43 3.24
183 184 4.619628 GCTCAAGTTGAGGAAGGTACTCTC 60.620 50.000 29.45 8.59 44.43 3.20
184 185 4.480115 TCAAGTTGAGGAAGGTACTCTCA 58.520 43.478 0.08 0.00 38.49 3.27
185 186 4.281182 TCAAGTTGAGGAAGGTACTCTCAC 59.719 45.833 0.08 0.00 38.49 3.51
186 187 4.120946 AGTTGAGGAAGGTACTCTCACT 57.879 45.455 0.00 0.00 38.49 3.41
187 188 4.484912 AGTTGAGGAAGGTACTCTCACTT 58.515 43.478 0.00 0.00 38.49 3.16
188 189 4.525100 AGTTGAGGAAGGTACTCTCACTTC 59.475 45.833 0.00 0.00 38.49 3.01
189 190 4.390129 TGAGGAAGGTACTCTCACTTCT 57.610 45.455 8.21 0.00 38.49 2.85
190 191 4.742012 TGAGGAAGGTACTCTCACTTCTT 58.258 43.478 8.21 2.10 38.49 2.52
191 192 4.767928 TGAGGAAGGTACTCTCACTTCTTC 59.232 45.833 11.50 11.50 43.49 2.87
192 193 5.005628 AGGAAGGTACTCTCACTTCTTCT 57.994 43.478 8.21 0.00 38.49 2.85
193 194 5.399113 AGGAAGGTACTCTCACTTCTTCTT 58.601 41.667 8.21 0.00 38.49 2.52
194 195 6.553857 AGGAAGGTACTCTCACTTCTTCTTA 58.446 40.000 8.21 0.00 38.49 2.10
195 196 7.011382 AGGAAGGTACTCTCACTTCTTCTTAA 58.989 38.462 8.21 0.00 38.49 1.85
196 197 7.676468 AGGAAGGTACTCTCACTTCTTCTTAAT 59.324 37.037 8.21 0.00 38.49 1.40
197 198 7.977293 GGAAGGTACTCTCACTTCTTCTTAATC 59.023 40.741 8.21 0.00 38.49 1.75
198 199 8.423906 AAGGTACTCTCACTTCTTCTTAATCA 57.576 34.615 0.00 0.00 38.49 2.57
199 200 8.423906 AGGTACTCTCACTTCTTCTTAATCAA 57.576 34.615 0.00 0.00 0.00 2.57
200 201 9.041354 AGGTACTCTCACTTCTTCTTAATCAAT 57.959 33.333 0.00 0.00 0.00 2.57
221 222 9.807649 ATCAATAAAAATGACAAGTCTTATGCC 57.192 29.630 1.53 0.00 0.00 4.40
222 223 9.023962 TCAATAAAAATGACAAGTCTTATGCCT 57.976 29.630 1.53 0.00 0.00 4.75
223 224 9.643693 CAATAAAAATGACAAGTCTTATGCCTT 57.356 29.630 1.53 0.00 0.00 4.35
224 225 9.643693 AATAAAAATGACAAGTCTTATGCCTTG 57.356 29.630 1.53 0.00 42.91 3.61
254 255 4.423625 AGGTACTTGCACTCCATATTCC 57.576 45.455 0.00 0.00 27.25 3.01
255 256 3.780294 AGGTACTTGCACTCCATATTCCA 59.220 43.478 0.00 0.00 27.25 3.53
256 257 3.877508 GGTACTTGCACTCCATATTCCAC 59.122 47.826 0.00 0.00 0.00 4.02
257 258 4.384208 GGTACTTGCACTCCATATTCCACT 60.384 45.833 0.00 0.00 0.00 4.00
258 259 5.163343 GGTACTTGCACTCCATATTCCACTA 60.163 44.000 0.00 0.00 0.00 2.74
259 260 4.770795 ACTTGCACTCCATATTCCACTAC 58.229 43.478 0.00 0.00 0.00 2.73
260 261 4.471386 ACTTGCACTCCATATTCCACTACT 59.529 41.667 0.00 0.00 0.00 2.57
261 262 4.672587 TGCACTCCATATTCCACTACTC 57.327 45.455 0.00 0.00 0.00 2.59
262 263 4.290093 TGCACTCCATATTCCACTACTCT 58.710 43.478 0.00 0.00 0.00 3.24
263 264 4.100035 TGCACTCCATATTCCACTACTCTG 59.900 45.833 0.00 0.00 0.00 3.35
264 265 4.626042 CACTCCATATTCCACTACTCTGC 58.374 47.826 0.00 0.00 0.00 4.26
265 266 4.100035 CACTCCATATTCCACTACTCTGCA 59.900 45.833 0.00 0.00 0.00 4.41
266 267 4.343526 ACTCCATATTCCACTACTCTGCAG 59.656 45.833 7.63 7.63 0.00 4.41
267 268 4.290093 TCCATATTCCACTACTCTGCAGT 58.710 43.478 14.67 0.00 36.55 4.40
268 269 4.716784 TCCATATTCCACTACTCTGCAGTT 59.283 41.667 14.67 4.66 33.62 3.16
269 270 4.813161 CCATATTCCACTACTCTGCAGTTG 59.187 45.833 14.67 10.57 33.62 3.16
270 271 5.395657 CCATATTCCACTACTCTGCAGTTGA 60.396 44.000 14.67 0.00 33.62 3.18
271 272 3.386768 TTCCACTACTCTGCAGTTGAC 57.613 47.619 14.67 0.00 33.62 3.18
272 273 2.316108 TCCACTACTCTGCAGTTGACA 58.684 47.619 14.67 0.00 33.62 3.58
273 274 2.698274 TCCACTACTCTGCAGTTGACAA 59.302 45.455 14.67 0.00 33.62 3.18
274 275 3.324846 TCCACTACTCTGCAGTTGACAAT 59.675 43.478 14.67 0.00 33.62 2.71
275 276 3.681897 CCACTACTCTGCAGTTGACAATC 59.318 47.826 14.67 0.00 33.62 2.67
276 277 3.681897 CACTACTCTGCAGTTGACAATCC 59.318 47.826 14.67 0.00 33.62 3.01
277 278 2.936919 ACTCTGCAGTTGACAATCCA 57.063 45.000 14.67 0.00 0.00 3.41
278 279 2.775890 ACTCTGCAGTTGACAATCCAG 58.224 47.619 14.67 1.72 0.00 3.86
279 280 2.105477 ACTCTGCAGTTGACAATCCAGT 59.895 45.455 14.67 2.41 0.00 4.00
280 281 3.324846 ACTCTGCAGTTGACAATCCAGTA 59.675 43.478 14.67 0.00 0.00 2.74
281 282 4.019860 ACTCTGCAGTTGACAATCCAGTAT 60.020 41.667 14.67 1.80 0.00 2.12
282 283 4.910195 TCTGCAGTTGACAATCCAGTATT 58.090 39.130 14.67 0.00 0.00 1.89
283 284 5.316167 TCTGCAGTTGACAATCCAGTATTT 58.684 37.500 14.67 0.00 0.00 1.40
284 285 6.472016 TCTGCAGTTGACAATCCAGTATTTA 58.528 36.000 14.67 0.00 0.00 1.40
285 286 6.371548 TCTGCAGTTGACAATCCAGTATTTAC 59.628 38.462 14.67 0.00 0.00 2.01
286 287 5.121611 TGCAGTTGACAATCCAGTATTTACG 59.878 40.000 0.00 0.00 0.00 3.18
287 288 5.560148 CAGTTGACAATCCAGTATTTACGC 58.440 41.667 0.00 0.00 0.00 4.42
288 289 5.121611 CAGTTGACAATCCAGTATTTACGCA 59.878 40.000 0.00 0.00 0.00 5.24
289 290 5.703592 AGTTGACAATCCAGTATTTACGCAA 59.296 36.000 0.00 0.00 0.00 4.85
290 291 5.539582 TGACAATCCAGTATTTACGCAAC 57.460 39.130 0.00 0.00 0.00 4.17
291 292 4.092237 TGACAATCCAGTATTTACGCAACG 59.908 41.667 0.00 0.00 0.00 4.10
292 293 4.247258 ACAATCCAGTATTTACGCAACGA 58.753 39.130 0.00 0.00 0.00 3.85
293 294 4.328983 ACAATCCAGTATTTACGCAACGAG 59.671 41.667 0.00 0.00 0.00 4.18
294 295 3.853831 TCCAGTATTTACGCAACGAGA 57.146 42.857 0.00 0.00 0.00 4.04
295 296 3.766151 TCCAGTATTTACGCAACGAGAG 58.234 45.455 0.00 0.00 0.00 3.20
308 309 1.025812 ACGAGAGTAATGGCGAGAGG 58.974 55.000 0.00 0.00 46.88 3.69
309 310 0.312416 CGAGAGTAATGGCGAGAGGG 59.688 60.000 0.00 0.00 0.00 4.30
310 311 0.032815 GAGAGTAATGGCGAGAGGGC 59.967 60.000 0.00 0.00 42.69 5.19
311 312 1.300233 GAGTAATGGCGAGAGGGCG 60.300 63.158 0.00 0.00 46.04 6.13
319 320 3.531207 CGAGAGGGCGCCATCTGA 61.531 66.667 44.91 0.00 0.00 3.27
320 321 2.903357 GAGAGGGCGCCATCTGAA 59.097 61.111 44.91 0.00 0.00 3.02
321 322 1.522580 GAGAGGGCGCCATCTGAAC 60.523 63.158 44.91 28.02 0.00 3.18
322 323 2.514824 GAGGGCGCCATCTGAACC 60.515 66.667 32.61 10.54 0.00 3.62
323 324 4.115199 AGGGCGCCATCTGAACCC 62.115 66.667 30.85 7.16 41.17 4.11
324 325 4.424711 GGGCGCCATCTGAACCCA 62.425 66.667 30.85 0.00 40.52 4.51
325 326 2.124151 GGCGCCATCTGAACCCAT 60.124 61.111 24.80 0.00 0.00 4.00
326 327 2.484062 GGCGCCATCTGAACCCATG 61.484 63.158 24.80 0.00 0.00 3.66
327 328 2.484062 GCGCCATCTGAACCCATGG 61.484 63.158 4.14 4.14 42.39 3.66
328 329 1.825191 CGCCATCTGAACCCATGGG 60.825 63.158 30.23 30.23 40.16 4.00
329 330 2.129785 GCCATCTGAACCCATGGGC 61.130 63.158 31.73 16.20 40.16 5.36
330 331 1.307309 CCATCTGAACCCATGGGCA 59.693 57.895 31.73 20.09 36.62 5.36
331 332 0.105862 CCATCTGAACCCATGGGCAT 60.106 55.000 31.73 20.35 36.62 4.40
332 333 1.145531 CCATCTGAACCCATGGGCATA 59.854 52.381 31.73 14.38 36.62 3.14
333 334 2.225192 CCATCTGAACCCATGGGCATAT 60.225 50.000 31.73 16.01 36.62 1.78
334 335 2.662535 TCTGAACCCATGGGCATATG 57.337 50.000 31.73 16.78 39.32 1.78
335 336 0.963962 CTGAACCCATGGGCATATGC 59.036 55.000 31.73 19.79 39.32 3.14
336 337 0.261109 TGAACCCATGGGCATATGCA 59.739 50.000 31.73 13.55 44.36 3.96
337 338 0.675633 GAACCCATGGGCATATGCAC 59.324 55.000 31.73 25.88 46.69 4.57
338 339 0.760189 AACCCATGGGCATATGCACC 60.760 55.000 31.73 23.82 45.73 5.01
339 340 1.909781 CCCATGGGCATATGCACCC 60.910 63.158 26.74 19.95 45.73 4.61
345 346 2.531522 GGGCATATGCACCCATTTTC 57.468 50.000 28.07 8.03 46.22 2.29
346 347 1.070601 GGGCATATGCACCCATTTTCC 59.929 52.381 28.07 13.25 46.22 3.13
347 348 1.761784 GGCATATGCACCCATTTTCCA 59.238 47.619 28.07 0.00 44.36 3.53
348 349 2.170187 GGCATATGCACCCATTTTCCAA 59.830 45.455 28.07 0.00 44.36 3.53
349 350 3.370315 GGCATATGCACCCATTTTCCAAA 60.370 43.478 28.07 0.00 44.36 3.28
350 351 4.260170 GCATATGCACCCATTTTCCAAAA 58.740 39.130 22.84 0.00 41.59 2.44
351 352 4.699257 GCATATGCACCCATTTTCCAAAAA 59.301 37.500 22.84 0.00 41.59 1.94
352 353 5.163733 GCATATGCACCCATTTTCCAAAAAG 60.164 40.000 22.84 0.00 41.59 2.27
353 354 3.922171 TGCACCCATTTTCCAAAAAGT 57.078 38.095 0.00 0.00 0.00 2.66
354 355 3.539604 TGCACCCATTTTCCAAAAAGTG 58.460 40.909 7.88 7.88 33.91 3.16
355 356 3.054802 TGCACCCATTTTCCAAAAAGTGT 60.055 39.130 11.50 0.00 33.60 3.55
356 357 4.162320 TGCACCCATTTTCCAAAAAGTGTA 59.838 37.500 11.50 7.00 33.60 2.90
357 358 5.163258 TGCACCCATTTTCCAAAAAGTGTAT 60.163 36.000 11.50 0.00 33.60 2.29
358 359 5.762711 GCACCCATTTTCCAAAAAGTGTATT 59.237 36.000 11.50 0.00 33.60 1.89
359 360 6.262049 GCACCCATTTTCCAAAAAGTGTATTT 59.738 34.615 11.50 0.00 33.60 1.40
360 361 7.201776 GCACCCATTTTCCAAAAAGTGTATTTT 60.202 33.333 11.50 0.00 33.60 1.82
361 362 9.331282 CACCCATTTTCCAAAAAGTGTATTTTA 57.669 29.630 0.00 0.00 31.96 1.52
362 363 9.907229 ACCCATTTTCCAAAAAGTGTATTTTAA 57.093 25.926 0.00 0.00 31.96 1.52
364 365 9.877137 CCATTTTCCAAAAAGTGTATTTTAAGC 57.123 29.630 0.00 0.00 31.96 3.09
367 368 7.687005 TTCCAAAAAGTGTATTTTAAGCACG 57.313 32.000 0.00 0.00 38.10 5.34
368 369 6.797454 TCCAAAAAGTGTATTTTAAGCACGT 58.203 32.000 0.00 0.00 38.10 4.49
369 370 7.259161 TCCAAAAAGTGTATTTTAAGCACGTT 58.741 30.769 0.00 0.00 38.10 3.99
370 371 7.760340 TCCAAAAAGTGTATTTTAAGCACGTTT 59.240 29.630 0.00 0.00 42.98 3.60
371 372 8.384365 CCAAAAAGTGTATTTTAAGCACGTTTT 58.616 29.630 12.22 12.22 46.87 2.43
410 411 9.491675 AAATCAAAAGAAAATGTCATGCATACA 57.508 25.926 0.00 5.17 36.67 2.29
411 412 9.661563 AATCAAAAGAAAATGTCATGCATACAT 57.338 25.926 0.00 7.38 39.22 2.29
426 427 6.766452 TGCATACATGTTTGAAAATGTGTG 57.234 33.333 18.99 15.45 44.27 3.82
427 428 6.279123 TGCATACATGTTTGAAAATGTGTGT 58.721 32.000 18.99 6.81 43.70 3.72
428 429 7.428826 TGCATACATGTTTGAAAATGTGTGTA 58.571 30.769 18.99 14.36 43.70 2.90
429 430 7.380870 TGCATACATGTTTGAAAATGTGTGTAC 59.619 33.333 18.99 8.83 43.70 2.90
430 431 7.409238 GCATACATGTTTGAAAATGTGTGTACG 60.409 37.037 18.99 2.00 43.70 3.67
431 432 4.737765 ACATGTTTGAAAATGTGTGTACGC 59.262 37.500 0.00 0.00 35.71 4.42
432 433 3.355270 TGTTTGAAAATGTGTGTACGCG 58.645 40.909 3.53 3.53 0.00 6.01
433 434 2.672188 TTGAAAATGTGTGTACGCGG 57.328 45.000 12.47 0.00 0.00 6.46
434 435 1.584175 TGAAAATGTGTGTACGCGGT 58.416 45.000 12.47 0.00 0.00 5.68
435 436 2.752121 TGAAAATGTGTGTACGCGGTA 58.248 42.857 12.47 0.00 0.00 4.02
436 437 2.475864 TGAAAATGTGTGTACGCGGTAC 59.524 45.455 12.47 11.29 39.24 3.34
437 438 2.151881 AAATGTGTGTACGCGGTACA 57.848 45.000 12.47 13.87 45.20 2.90
447 448 5.266756 TGTACGCGGTACAAAGTTTTATG 57.733 39.130 12.47 0.00 44.56 1.90
448 449 4.987285 TGTACGCGGTACAAAGTTTTATGA 59.013 37.500 12.47 0.00 44.56 2.15
449 450 5.464722 TGTACGCGGTACAAAGTTTTATGAA 59.535 36.000 12.47 0.00 44.56 2.57
450 451 5.421212 ACGCGGTACAAAGTTTTATGAAA 57.579 34.783 12.47 0.00 0.00 2.69
451 452 5.819059 ACGCGGTACAAAGTTTTATGAAAA 58.181 33.333 12.47 0.00 0.00 2.29
452 453 6.264088 ACGCGGTACAAAGTTTTATGAAAAA 58.736 32.000 12.47 0.00 32.15 1.94
474 475 6.588348 AAATGTCTTTTTCTTTTGCCTTCG 57.412 33.333 0.00 0.00 0.00 3.79
475 476 3.443976 TGTCTTTTTCTTTTGCCTTCGC 58.556 40.909 0.00 0.00 0.00 4.70
476 477 3.119316 TGTCTTTTTCTTTTGCCTTCGCA 60.119 39.130 0.00 0.00 45.49 5.10
500 501 5.859205 AAAAGACAAATTCCAGTGCTTCT 57.141 34.783 0.00 0.00 0.00 2.85
501 502 6.959639 AAAAGACAAATTCCAGTGCTTCTA 57.040 33.333 0.00 0.00 0.00 2.10
502 503 6.959639 AAAGACAAATTCCAGTGCTTCTAA 57.040 33.333 0.00 0.00 0.00 2.10
503 504 6.959639 AAGACAAATTCCAGTGCTTCTAAA 57.040 33.333 0.00 0.00 0.00 1.85
504 505 7.530426 AAGACAAATTCCAGTGCTTCTAAAT 57.470 32.000 0.00 0.00 0.00 1.40
505 506 8.635765 AAGACAAATTCCAGTGCTTCTAAATA 57.364 30.769 0.00 0.00 0.00 1.40
506 507 8.635765 AGACAAATTCCAGTGCTTCTAAATAA 57.364 30.769 0.00 0.00 0.00 1.40
507 508 9.247861 AGACAAATTCCAGTGCTTCTAAATAAT 57.752 29.630 0.00 0.00 0.00 1.28
508 509 9.294030 GACAAATTCCAGTGCTTCTAAATAATG 57.706 33.333 0.00 0.00 0.00 1.90
509 510 8.806146 ACAAATTCCAGTGCTTCTAAATAATGT 58.194 29.630 0.00 0.00 0.00 2.71
510 511 9.643693 CAAATTCCAGTGCTTCTAAATAATGTT 57.356 29.630 0.00 0.00 0.00 2.71
511 512 9.860898 AAATTCCAGTGCTTCTAAATAATGTTC 57.139 29.630 0.00 0.00 0.00 3.18
512 513 7.391148 TTCCAGTGCTTCTAAATAATGTTCC 57.609 36.000 0.00 0.00 0.00 3.62
513 514 6.480763 TCCAGTGCTTCTAAATAATGTTCCA 58.519 36.000 0.00 0.00 0.00 3.53
514 515 6.374333 TCCAGTGCTTCTAAATAATGTTCCAC 59.626 38.462 0.00 0.00 0.00 4.02
515 516 6.250819 CAGTGCTTCTAAATAATGTTCCACG 58.749 40.000 0.00 0.00 0.00 4.94
516 517 6.092122 CAGTGCTTCTAAATAATGTTCCACGA 59.908 38.462 0.00 0.00 0.00 4.35
517 518 6.092259 AGTGCTTCTAAATAATGTTCCACGAC 59.908 38.462 0.00 0.00 0.00 4.34
518 519 5.935206 TGCTTCTAAATAATGTTCCACGACA 59.065 36.000 0.00 0.00 0.00 4.35
519 520 6.597672 TGCTTCTAAATAATGTTCCACGACAT 59.402 34.615 0.00 0.00 41.83 3.06
520 521 7.766738 TGCTTCTAAATAATGTTCCACGACATA 59.233 33.333 0.00 0.00 39.25 2.29
521 522 8.609176 GCTTCTAAATAATGTTCCACGACATAA 58.391 33.333 0.00 0.00 39.25 1.90
551 552 1.950828 TTTTTGCACAGGCCACAATG 58.049 45.000 5.01 0.00 40.13 2.82
552 553 1.117994 TTTTGCACAGGCCACAATGA 58.882 45.000 5.01 0.00 40.13 2.57
553 554 1.117994 TTTGCACAGGCCACAATGAA 58.882 45.000 5.01 0.00 40.13 2.57
554 555 1.117994 TTGCACAGGCCACAATGAAA 58.882 45.000 5.01 0.00 40.13 2.69
555 556 0.675083 TGCACAGGCCACAATGAAAG 59.325 50.000 5.01 0.00 40.13 2.62
556 557 0.675633 GCACAGGCCACAATGAAAGT 59.324 50.000 5.01 0.00 0.00 2.66
557 558 1.069049 GCACAGGCCACAATGAAAGTT 59.931 47.619 5.01 0.00 0.00 2.66
558 559 2.295909 GCACAGGCCACAATGAAAGTTA 59.704 45.455 5.01 0.00 0.00 2.24
559 560 3.056607 GCACAGGCCACAATGAAAGTTAT 60.057 43.478 5.01 0.00 0.00 1.89
560 561 4.561326 GCACAGGCCACAATGAAAGTTATT 60.561 41.667 5.01 0.00 0.00 1.40
561 562 5.540911 CACAGGCCACAATGAAAGTTATTT 58.459 37.500 5.01 0.00 0.00 1.40
562 563 5.990996 CACAGGCCACAATGAAAGTTATTTT 59.009 36.000 5.01 0.00 0.00 1.82
563 564 6.482973 CACAGGCCACAATGAAAGTTATTTTT 59.517 34.615 5.01 0.00 0.00 1.94
564 565 6.705825 ACAGGCCACAATGAAAGTTATTTTTC 59.294 34.615 5.01 0.00 37.53 2.29
565 566 6.147656 CAGGCCACAATGAAAGTTATTTTTCC 59.852 38.462 5.01 0.00 36.46 3.13
566 567 5.120053 GGCCACAATGAAAGTTATTTTTCCG 59.880 40.000 0.00 0.00 36.46 4.30
567 568 5.694458 GCCACAATGAAAGTTATTTTTCCGT 59.306 36.000 0.00 0.00 36.46 4.69
568 569 6.346518 GCCACAATGAAAGTTATTTTTCCGTG 60.347 38.462 0.00 0.00 36.46 4.94
569 570 6.920758 CCACAATGAAAGTTATTTTTCCGTGA 59.079 34.615 11.23 0.00 36.46 4.35
570 571 7.436673 CCACAATGAAAGTTATTTTTCCGTGAA 59.563 33.333 11.23 0.00 36.46 3.18
571 572 8.812329 CACAATGAAAGTTATTTTTCCGTGAAA 58.188 29.630 0.00 0.00 36.46 2.69
572 573 8.813282 ACAATGAAAGTTATTTTTCCGTGAAAC 58.187 29.630 0.00 0.00 36.46 2.78
573 574 9.030301 CAATGAAAGTTATTTTTCCGTGAAACT 57.970 29.630 0.00 0.00 36.46 2.66
574 575 9.594478 AATGAAAGTTATTTTTCCGTGAAACTT 57.406 25.926 0.00 0.00 38.45 2.66
575 576 8.989653 TGAAAGTTATTTTTCCGTGAAACTTT 57.010 26.923 9.93 9.93 45.07 2.66
579 580 8.515473 AGTTATTTTTCCGTGAAACTTTATGC 57.485 30.769 0.00 0.00 30.83 3.14
580 581 8.138712 AGTTATTTTTCCGTGAAACTTTATGCA 58.861 29.630 0.00 0.00 30.83 3.96
581 582 6.763303 ATTTTTCCGTGAAACTTTATGCAC 57.237 33.333 0.00 0.00 30.83 4.57
584 585 2.308347 CGTGAAACTTTATGCACGCA 57.692 45.000 0.00 0.00 45.81 5.24
585 586 1.969256 CGTGAAACTTTATGCACGCAC 59.031 47.619 0.00 0.00 45.81 5.34
586 587 2.601029 CGTGAAACTTTATGCACGCACA 60.601 45.455 0.00 0.00 45.81 4.57
587 588 3.564511 GTGAAACTTTATGCACGCACAT 58.435 40.909 0.00 0.00 0.00 3.21
588 589 4.667922 CGTGAAACTTTATGCACGCACATA 60.668 41.667 0.00 0.00 45.81 2.29
589 590 4.788100 GTGAAACTTTATGCACGCACATAG 59.212 41.667 0.00 0.00 34.15 2.23
590 591 4.693095 TGAAACTTTATGCACGCACATAGA 59.307 37.500 0.00 0.00 34.15 1.98
591 592 5.180304 TGAAACTTTATGCACGCACATAGAA 59.820 36.000 0.00 0.00 34.15 2.10
592 593 4.600012 ACTTTATGCACGCACATAGAAC 57.400 40.909 0.00 0.00 34.15 3.01
593 594 4.000325 ACTTTATGCACGCACATAGAACA 59.000 39.130 0.00 0.00 34.15 3.18
594 595 4.635765 ACTTTATGCACGCACATAGAACAT 59.364 37.500 0.00 0.00 34.15 2.71
595 596 4.534794 TTATGCACGCACATAGAACATG 57.465 40.909 0.00 0.00 34.15 3.21
596 597 1.807139 TGCACGCACATAGAACATGT 58.193 45.000 0.00 0.00 0.00 3.21
597 598 2.966050 TGCACGCACATAGAACATGTA 58.034 42.857 0.00 0.00 0.00 2.29
598 599 2.929398 TGCACGCACATAGAACATGTAG 59.071 45.455 0.00 0.00 0.00 2.74
599 600 3.186909 GCACGCACATAGAACATGTAGA 58.813 45.455 0.00 0.00 0.00 2.59
600 601 3.000322 GCACGCACATAGAACATGTAGAC 60.000 47.826 0.00 0.00 0.00 2.59
601 602 4.173256 CACGCACATAGAACATGTAGACA 58.827 43.478 0.00 0.00 0.00 3.41
602 603 4.805719 CACGCACATAGAACATGTAGACAT 59.194 41.667 0.00 0.00 36.96 3.06
603 604 5.977129 CACGCACATAGAACATGTAGACATA 59.023 40.000 0.00 0.00 34.26 2.29
604 605 5.977725 ACGCACATAGAACATGTAGACATAC 59.022 40.000 0.00 0.00 34.26 2.39
605 606 5.402568 CGCACATAGAACATGTAGACATACC 59.597 44.000 0.00 0.00 34.26 2.73
606 607 5.696724 GCACATAGAACATGTAGACATACCC 59.303 44.000 0.00 0.00 34.26 3.69
607 608 5.920840 CACATAGAACATGTAGACATACCCG 59.079 44.000 0.00 0.00 34.26 5.28
608 609 3.454371 AGAACATGTAGACATACCCGC 57.546 47.619 0.00 0.00 34.26 6.13
609 610 2.124903 GAACATGTAGACATACCCGCG 58.875 52.381 0.00 0.00 34.26 6.46
610 611 1.108776 ACATGTAGACATACCCGCGT 58.891 50.000 4.92 0.00 34.26 6.01
611 612 2.300433 ACATGTAGACATACCCGCGTA 58.700 47.619 4.92 0.00 34.26 4.42
612 613 2.689471 ACATGTAGACATACCCGCGTAA 59.311 45.455 4.92 0.00 34.26 3.18
613 614 3.319972 ACATGTAGACATACCCGCGTAAT 59.680 43.478 4.92 0.00 34.26 1.89
614 615 4.202182 ACATGTAGACATACCCGCGTAATT 60.202 41.667 4.92 0.00 34.26 1.40
615 616 4.389890 TGTAGACATACCCGCGTAATTT 57.610 40.909 4.92 0.00 0.00 1.82
616 617 4.757594 TGTAGACATACCCGCGTAATTTT 58.242 39.130 4.92 0.00 0.00 1.82
617 618 5.177326 TGTAGACATACCCGCGTAATTTTT 58.823 37.500 4.92 0.00 0.00 1.94
674 675 9.964303 TTTTCAAAATGGATTCATATGTATCCG 57.036 29.630 26.95 16.92 42.71 4.18
675 676 7.686438 TCAAAATGGATTCATATGTATCCGG 57.314 36.000 26.95 17.34 42.71 5.14
676 677 7.457561 TCAAAATGGATTCATATGTATCCGGA 58.542 34.615 26.95 6.61 42.71 5.14
677 678 8.108999 TCAAAATGGATTCATATGTATCCGGAT 58.891 33.333 26.95 22.95 42.71 4.18
678 679 8.742777 CAAAATGGATTCATATGTATCCGGATT 58.257 33.333 26.95 21.00 42.71 3.01
679 680 8.511604 AAATGGATTCATATGTATCCGGATTC 57.488 34.615 26.95 18.72 42.71 2.52
680 681 6.619329 TGGATTCATATGTATCCGGATTCA 57.381 37.500 26.95 24.24 42.71 2.57
681 682 7.199167 TGGATTCATATGTATCCGGATTCAT 57.801 36.000 31.40 31.40 42.71 2.57
682 683 7.275183 TGGATTCATATGTATCCGGATTCATC 58.725 38.462 32.31 20.78 42.71 2.92
683 684 6.708054 GGATTCATATGTATCCGGATTCATCC 59.292 42.308 32.31 24.63 43.65 3.51
700 701 2.802792 CATGCACTTCATGGCCCG 59.197 61.111 0.00 0.00 46.81 6.13
701 702 3.142838 ATGCACTTCATGGCCCGC 61.143 61.111 0.00 0.00 33.26 6.13
712 713 1.656818 ATGGCCCGCTTTTCATCACG 61.657 55.000 0.00 0.00 0.00 4.35
717 718 0.511221 CCGCTTTTCATCACGTCGTT 59.489 50.000 0.00 0.00 0.00 3.85
794 795 1.529244 ACAAGCCTGCCAAGTCCAC 60.529 57.895 0.00 0.00 0.00 4.02
897 899 1.662876 CGACTTGTGCAAAATCCACCG 60.663 52.381 0.00 0.00 32.30 4.94
925 927 1.078759 CAAGACGAGACCACGCCATC 61.079 60.000 0.00 0.00 36.70 3.51
965 967 0.531532 CTCCCATACCTGCTTGCTCG 60.532 60.000 0.00 0.00 0.00 5.03
1053 1055 1.448540 CACAGCGGGCGAGAAGAAT 60.449 57.895 0.00 0.00 0.00 2.40
1374 1376 3.698463 GTGTCCGTCAACGCCACG 61.698 66.667 0.00 0.00 38.18 4.94
1380 1382 2.248431 GTCAACGCCACGCTCAAC 59.752 61.111 0.00 0.00 0.00 3.18
1564 1566 3.081409 ACCGGATCTCCCCCAACG 61.081 66.667 9.46 0.00 0.00 4.10
1569 1571 0.392595 GGATCTCCCCCAACGTCAAC 60.393 60.000 0.00 0.00 0.00 3.18
1692 1694 2.079925 GACATCAAGGTGAACTGCTCC 58.920 52.381 0.00 0.00 0.00 4.70
1785 1788 2.224621 ACCGATCATTGCTTATCAGGGG 60.225 50.000 0.00 0.00 0.00 4.79
1791 1794 0.255890 TTGCTTATCAGGGGCAGGAC 59.744 55.000 0.00 0.00 37.28 3.85
1844 1847 7.946381 ATATCCTCCCTTTCTTTTTCTTCAC 57.054 36.000 0.00 0.00 0.00 3.18
1874 1877 5.108187 TGAGATGGATCCTCCTTTTCTTG 57.892 43.478 14.23 0.00 37.46 3.02
1879 1882 2.578480 GGATCCTCCTTTTCTTGGACCT 59.422 50.000 3.84 0.00 32.53 3.85
1962 1965 2.566833 TCAGGGTGTTCCACTTCATG 57.433 50.000 0.00 0.00 38.24 3.07
1999 2002 4.218417 CAGTTGCTTAGGCCAGTTATTGTT 59.782 41.667 5.01 0.00 37.74 2.83
2022 2025 4.333649 TCACTTGACAGAACAAGAGCAAAG 59.666 41.667 14.00 0.00 46.85 2.77
2030 2033 5.125417 ACAGAACAAGAGCAAAGCTACAAAA 59.875 36.000 0.00 0.00 39.88 2.44
2090 2094 1.508632 TGTAGTCCTTTTGCTGACGC 58.491 50.000 0.00 0.00 36.61 5.19
2122 2126 7.993821 TTCTAGTATTTTCTCGCTTCATCTG 57.006 36.000 0.00 0.00 0.00 2.90
2135 2139 1.046204 TCATCTGCGCCATCTCTCAT 58.954 50.000 4.18 0.00 0.00 2.90
2173 2177 1.751437 ATCGTGACTCTCGGATCACA 58.249 50.000 10.00 0.13 44.54 3.58
2175 2179 1.468914 TCGTGACTCTCGGATCACAAG 59.531 52.381 10.00 0.00 44.54 3.16
2193 2197 9.801714 GATCACAAGAATTTACAAAAAGCATTG 57.198 29.630 0.00 0.00 36.37 2.82
2196 2200 8.277713 CACAAGAATTTACAAAAAGCATTGAGG 58.722 33.333 4.22 0.00 34.38 3.86
2197 2201 7.986889 ACAAGAATTTACAAAAAGCATTGAGGT 59.013 29.630 4.22 0.00 34.38 3.85
2198 2202 8.490355 CAAGAATTTACAAAAAGCATTGAGGTC 58.510 33.333 4.22 0.00 34.38 3.85
2201 2205 1.330306 CAAAAAGCATTGAGGTCGCG 58.670 50.000 0.00 0.00 31.84 5.87
2202 2206 0.951558 AAAAAGCATTGAGGTCGCGT 59.048 45.000 5.77 0.00 0.00 6.01
2216 2221 1.372582 TCGCGTATCGAGGTAGTGTT 58.627 50.000 5.77 0.00 43.16 3.32
2217 2222 1.063027 TCGCGTATCGAGGTAGTGTTG 59.937 52.381 5.77 0.00 43.16 3.33
2224 2229 6.034591 CGTATCGAGGTAGTGTTGAAAGATT 58.965 40.000 0.00 0.00 0.00 2.40
2236 2241 8.467402 AGTGTTGAAAGATTAGATAAGTCACG 57.533 34.615 0.00 0.00 0.00 4.35
2346 2354 1.071228 GGGAGTTGTTAGACGTTGGGT 59.929 52.381 0.00 0.00 0.00 4.51
2371 2380 3.188254 TGTGATGTGTTTGATTAGCACGG 59.812 43.478 0.00 0.00 36.04 4.94
2406 2415 6.294231 CCTTAAGAAAAAGCCAAGAGTTCCTC 60.294 42.308 3.36 0.00 0.00 3.71
2407 2416 4.170468 AGAAAAAGCCAAGAGTTCCTCA 57.830 40.909 0.00 0.00 32.06 3.86
2408 2417 4.536765 AGAAAAAGCCAAGAGTTCCTCAA 58.463 39.130 0.00 0.00 32.06 3.02
2415 2424 2.040278 CCAAGAGTTCCTCAACATCCCA 59.960 50.000 0.00 0.00 34.60 4.37
2424 2433 3.965258 AACATCCCACTGGCGCCA 61.965 61.111 30.59 30.59 0.00 5.69
2445 2454 4.065281 CCGGTCCGCCTCGTCTTT 62.065 66.667 5.50 0.00 0.00 2.52
2450 2459 2.204461 TCCGCCTCGTCTTTGGTGA 61.204 57.895 0.00 0.00 36.02 4.02
2453 2462 1.671379 GCCTCGTCTTTGGTGACCC 60.671 63.158 0.00 0.00 33.70 4.46
2457 2466 2.168496 CTCGTCTTTGGTGACCCTAGA 58.832 52.381 0.00 0.00 33.70 2.43
2464 2473 0.982852 TGGTGACCCTAGAGCCATGG 60.983 60.000 7.63 7.63 0.00 3.66
2483 2492 2.169789 CGGCGCAGTGGATCTCAAG 61.170 63.158 10.83 0.00 0.00 3.02
2485 2494 1.449246 GCGCAGTGGATCTCAAGCT 60.449 57.895 0.30 0.00 0.00 3.74
2489 2498 3.201290 CGCAGTGGATCTCAAGCTTTAT 58.799 45.455 0.00 0.00 0.00 1.40
2491 2500 4.194640 GCAGTGGATCTCAAGCTTTATCA 58.805 43.478 0.00 0.00 0.00 2.15
2500 2509 3.827634 GCTTTATCAGCGGGTGGG 58.172 61.111 7.42 0.00 39.29 4.61
2501 2510 2.481471 GCTTTATCAGCGGGTGGGC 61.481 63.158 7.42 1.58 39.29 5.36
2502 2511 1.224592 CTTTATCAGCGGGTGGGCT 59.775 57.895 7.42 0.00 46.13 5.19
2503 2512 0.815615 CTTTATCAGCGGGTGGGCTC 60.816 60.000 7.42 0.00 42.53 4.70
2504 2513 1.271840 TTTATCAGCGGGTGGGCTCT 61.272 55.000 7.42 0.00 42.53 4.09
2505 2514 0.397957 TTATCAGCGGGTGGGCTCTA 60.398 55.000 7.42 0.00 42.53 2.43
2506 2515 0.178932 TATCAGCGGGTGGGCTCTAT 60.179 55.000 7.42 0.00 42.53 1.98
2507 2516 1.056700 ATCAGCGGGTGGGCTCTATT 61.057 55.000 7.42 0.00 42.53 1.73
2508 2517 1.224592 CAGCGGGTGGGCTCTATTT 59.775 57.895 0.00 0.00 42.53 1.40
2509 2518 0.394352 CAGCGGGTGGGCTCTATTTT 60.394 55.000 0.00 0.00 42.53 1.82
2510 2519 0.331616 AGCGGGTGGGCTCTATTTTT 59.668 50.000 0.00 0.00 39.61 1.94
2511 2520 1.562475 AGCGGGTGGGCTCTATTTTTA 59.438 47.619 0.00 0.00 39.61 1.52
2512 2521 1.947456 GCGGGTGGGCTCTATTTTTAG 59.053 52.381 0.00 0.00 0.00 1.85
2513 2522 2.420967 GCGGGTGGGCTCTATTTTTAGA 60.421 50.000 0.00 0.00 0.00 2.10
2514 2523 3.747708 GCGGGTGGGCTCTATTTTTAGAT 60.748 47.826 0.00 0.00 0.00 1.98
2515 2524 4.504340 GCGGGTGGGCTCTATTTTTAGATA 60.504 45.833 0.00 0.00 0.00 1.98
2516 2525 5.803470 GCGGGTGGGCTCTATTTTTAGATAT 60.803 44.000 0.00 0.00 0.00 1.63
2517 2526 6.238648 CGGGTGGGCTCTATTTTTAGATATT 58.761 40.000 0.00 0.00 0.00 1.28
2546 2555 5.358725 TGAGTTTTGTTAGGGTTTTGTCCTC 59.641 40.000 0.00 0.00 35.92 3.71
2567 2576 0.178944 TCAGGAAGACAAGACGGGGA 60.179 55.000 0.00 0.00 0.00 4.81
2590 2599 4.878397 ACGGCTTCCTGAAGATGAAATAAG 59.122 41.667 11.00 0.00 40.79 1.73
2594 2603 6.153510 GGCTTCCTGAAGATGAAATAAGGTTT 59.846 38.462 11.00 0.00 40.79 3.27
2601 2610 6.959366 TGAAGATGAAATAAGGTTTTCCCCAT 59.041 34.615 0.00 0.00 41.86 4.00
2609 2618 0.927029 GGTTTTCCCCATCTAGCCCT 59.073 55.000 0.00 0.00 0.00 5.19
2611 2620 0.837272 TTTTCCCCATCTAGCCCTCG 59.163 55.000 0.00 0.00 0.00 4.63
2616 2625 1.519751 CCCATCTAGCCCTCGTCTCG 61.520 65.000 0.00 0.00 0.00 4.04
2628 2637 1.371758 CGTCTCGGTGGTGTGTCTG 60.372 63.158 0.00 0.00 0.00 3.51
2635 2644 3.533105 TGGTGTGTCTGGCGTCGT 61.533 61.111 0.00 0.00 0.00 4.34
2637 2646 3.097728 GTGTGTCTGGCGTCGTCG 61.098 66.667 0.00 0.00 40.37 5.12
2666 2675 2.046938 GGAGGTGTGTCTCCGACAA 58.953 57.895 0.00 0.00 44.49 3.18
2669 2678 2.232941 GGAGGTGTGTCTCCGACAAATA 59.767 50.000 0.00 0.00 44.49 1.40
2689 2698 3.665745 ATGTTCTTGGTGGATTTGCAC 57.334 42.857 0.00 0.00 0.00 4.57
2697 2706 1.453155 GTGGATTTGCACGGATCTGT 58.547 50.000 0.00 0.00 0.00 3.41
2717 2726 2.193306 TCGTAATTCGGCTACGTTCC 57.807 50.000 0.00 0.00 42.16 3.62
2737 2746 5.246981 TCCTGTGTCTTCAAATTGGATCT 57.753 39.130 0.00 0.00 0.00 2.75
2750 2759 5.531122 AATTGGATCTTTCCGATCTACGA 57.469 39.130 0.00 0.00 44.23 3.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.147958 TCATAGCTCCAAAACGCGTTT 58.852 42.857 30.36 30.36 0.00 3.60
1 2 1.803334 TCATAGCTCCAAAACGCGTT 58.197 45.000 20.79 20.79 0.00 4.84
2 3 2.024176 ATCATAGCTCCAAAACGCGT 57.976 45.000 5.58 5.58 0.00 6.01
3 4 3.063997 AGAAATCATAGCTCCAAAACGCG 59.936 43.478 3.53 3.53 0.00 6.01
4 5 4.622701 AGAAATCATAGCTCCAAAACGC 57.377 40.909 0.00 0.00 0.00 4.84
5 6 7.619982 GCAAAAAGAAATCATAGCTCCAAAACG 60.620 37.037 0.00 0.00 0.00 3.60
6 7 7.360353 GGCAAAAAGAAATCATAGCTCCAAAAC 60.360 37.037 0.00 0.00 0.00 2.43
7 8 6.650390 GGCAAAAAGAAATCATAGCTCCAAAA 59.350 34.615 0.00 0.00 0.00 2.44
8 9 6.165577 GGCAAAAAGAAATCATAGCTCCAAA 58.834 36.000 0.00 0.00 0.00 3.28
9 10 5.245751 TGGCAAAAAGAAATCATAGCTCCAA 59.754 36.000 0.00 0.00 0.00 3.53
10 11 4.771577 TGGCAAAAAGAAATCATAGCTCCA 59.228 37.500 0.00 0.00 0.00 3.86
11 12 5.105063 GTGGCAAAAAGAAATCATAGCTCC 58.895 41.667 0.00 0.00 0.00 4.70
12 13 4.795278 CGTGGCAAAAAGAAATCATAGCTC 59.205 41.667 0.00 0.00 0.00 4.09
13 14 4.458989 TCGTGGCAAAAAGAAATCATAGCT 59.541 37.500 0.00 0.00 0.00 3.32
14 15 4.732784 TCGTGGCAAAAAGAAATCATAGC 58.267 39.130 0.00 0.00 0.00 2.97
15 16 7.009540 GGAAATCGTGGCAAAAAGAAATCATAG 59.990 37.037 0.00 0.00 0.00 2.23
16 17 6.811170 GGAAATCGTGGCAAAAAGAAATCATA 59.189 34.615 0.00 0.00 0.00 2.15
17 18 5.639082 GGAAATCGTGGCAAAAAGAAATCAT 59.361 36.000 0.00 0.00 0.00 2.45
18 19 4.987912 GGAAATCGTGGCAAAAAGAAATCA 59.012 37.500 0.00 0.00 0.00 2.57
19 20 4.987912 TGGAAATCGTGGCAAAAAGAAATC 59.012 37.500 0.00 0.00 0.00 2.17
20 21 4.749598 GTGGAAATCGTGGCAAAAAGAAAT 59.250 37.500 0.00 0.00 0.00 2.17
21 22 4.116238 GTGGAAATCGTGGCAAAAAGAAA 58.884 39.130 0.00 0.00 0.00 2.52
22 23 3.491792 GGTGGAAATCGTGGCAAAAAGAA 60.492 43.478 0.00 0.00 0.00 2.52
23 24 2.035321 GGTGGAAATCGTGGCAAAAAGA 59.965 45.455 0.00 0.00 0.00 2.52
24 25 2.223923 TGGTGGAAATCGTGGCAAAAAG 60.224 45.455 0.00 0.00 0.00 2.27
25 26 1.757118 TGGTGGAAATCGTGGCAAAAA 59.243 42.857 0.00 0.00 0.00 1.94
26 27 1.403814 TGGTGGAAATCGTGGCAAAA 58.596 45.000 0.00 0.00 0.00 2.44
27 28 1.403814 TTGGTGGAAATCGTGGCAAA 58.596 45.000 0.00 0.00 0.00 3.68
28 29 1.271934 CATTGGTGGAAATCGTGGCAA 59.728 47.619 0.00 0.00 0.00 4.52
29 30 0.887247 CATTGGTGGAAATCGTGGCA 59.113 50.000 0.00 0.00 0.00 4.92
30 31 0.887933 ACATTGGTGGAAATCGTGGC 59.112 50.000 0.00 0.00 0.00 5.01
31 32 2.158559 TCACATTGGTGGAAATCGTGG 58.841 47.619 0.00 0.00 45.32 4.94
32 33 4.439305 AATCACATTGGTGGAAATCGTG 57.561 40.909 0.00 0.00 45.32 4.35
33 34 4.522405 TGAAATCACATTGGTGGAAATCGT 59.478 37.500 0.00 0.00 45.32 3.73
34 35 5.058149 TGAAATCACATTGGTGGAAATCG 57.942 39.130 0.00 0.00 45.32 3.34
35 36 6.632909 TCATGAAATCACATTGGTGGAAATC 58.367 36.000 0.00 0.00 45.32 2.17
36 37 6.608539 TCATGAAATCACATTGGTGGAAAT 57.391 33.333 0.00 0.00 45.32 2.17
37 38 6.210984 TCATCATGAAATCACATTGGTGGAAA 59.789 34.615 0.00 0.00 45.32 3.13
38 39 5.715753 TCATCATGAAATCACATTGGTGGAA 59.284 36.000 0.00 0.00 45.32 3.53
39 40 5.262804 TCATCATGAAATCACATTGGTGGA 58.737 37.500 0.00 0.00 45.32 4.02
40 41 5.585820 TCATCATGAAATCACATTGGTGG 57.414 39.130 0.00 0.00 45.32 4.61
41 42 7.094631 AGTTTCATCATGAAATCACATTGGTG 58.905 34.615 15.91 0.00 46.55 4.17
42 43 7.235935 AGTTTCATCATGAAATCACATTGGT 57.764 32.000 15.91 0.00 46.55 3.67
43 44 8.440059 CAAAGTTTCATCATGAAATCACATTGG 58.560 33.333 15.91 1.68 46.55 3.16
44 45 7.955324 GCAAAGTTTCATCATGAAATCACATTG 59.045 33.333 15.91 13.39 46.55 2.82
45 46 7.658167 TGCAAAGTTTCATCATGAAATCACATT 59.342 29.630 15.91 1.14 46.55 2.71
46 47 7.156000 TGCAAAGTTTCATCATGAAATCACAT 58.844 30.769 15.91 0.00 46.55 3.21
47 48 6.514063 TGCAAAGTTTCATCATGAAATCACA 58.486 32.000 15.91 7.85 46.55 3.58
48 49 7.410800 TTGCAAAGTTTCATCATGAAATCAC 57.589 32.000 15.91 4.42 46.55 3.06
49 50 6.146510 GCTTGCAAAGTTTCATCATGAAATCA 59.853 34.615 15.91 6.91 46.55 2.57
50 51 6.367969 AGCTTGCAAAGTTTCATCATGAAATC 59.632 34.615 15.91 9.71 46.55 2.17
51 52 6.228258 AGCTTGCAAAGTTTCATCATGAAAT 58.772 32.000 15.91 0.00 46.55 2.17
83 84 9.503427 CTAGTGTGTGGAAAACTTTAAGAAAAG 57.497 33.333 0.00 0.00 46.34 2.27
84 85 9.233649 TCTAGTGTGTGGAAAACTTTAAGAAAA 57.766 29.630 0.00 0.00 0.00 2.29
85 86 8.795842 TCTAGTGTGTGGAAAACTTTAAGAAA 57.204 30.769 0.00 0.00 0.00 2.52
86 87 8.795842 TTCTAGTGTGTGGAAAACTTTAAGAA 57.204 30.769 0.00 0.00 0.00 2.52
87 88 8.974060 ATTCTAGTGTGTGGAAAACTTTAAGA 57.026 30.769 0.00 0.00 0.00 2.10
93 94 9.403583 TCTAAAAATTCTAGTGTGTGGAAAACT 57.596 29.630 0.00 0.00 0.00 2.66
127 128 9.162764 GGTCTTAGCATGAACAGTAAATTAGAA 57.837 33.333 0.00 0.00 0.00 2.10
128 129 8.318412 TGGTCTTAGCATGAACAGTAAATTAGA 58.682 33.333 0.00 0.00 0.00 2.10
129 130 8.492673 TGGTCTTAGCATGAACAGTAAATTAG 57.507 34.615 0.00 0.00 0.00 1.73
130 131 9.461312 AATGGTCTTAGCATGAACAGTAAATTA 57.539 29.630 0.00 0.00 36.31 1.40
131 132 7.944729 ATGGTCTTAGCATGAACAGTAAATT 57.055 32.000 0.00 0.00 34.64 1.82
132 133 7.611467 TGAATGGTCTTAGCATGAACAGTAAAT 59.389 33.333 0.00 0.00 36.31 1.40
133 134 6.939730 TGAATGGTCTTAGCATGAACAGTAAA 59.060 34.615 0.00 0.00 36.31 2.01
134 135 6.472016 TGAATGGTCTTAGCATGAACAGTAA 58.528 36.000 0.00 0.00 36.31 2.24
135 136 6.048732 TGAATGGTCTTAGCATGAACAGTA 57.951 37.500 0.00 0.00 36.31 2.74
136 137 4.910195 TGAATGGTCTTAGCATGAACAGT 58.090 39.130 0.00 0.00 36.31 3.55
137 138 5.675575 GCTTGAATGGTCTTAGCATGAACAG 60.676 44.000 0.00 0.00 36.31 3.16
138 139 4.156556 GCTTGAATGGTCTTAGCATGAACA 59.843 41.667 0.00 0.00 36.31 3.18
139 140 4.397417 AGCTTGAATGGTCTTAGCATGAAC 59.603 41.667 0.00 0.00 36.31 3.18
140 141 4.592942 AGCTTGAATGGTCTTAGCATGAA 58.407 39.130 0.00 0.00 36.31 2.57
141 142 4.194640 GAGCTTGAATGGTCTTAGCATGA 58.805 43.478 0.00 0.00 36.31 3.07
142 143 3.943381 TGAGCTTGAATGGTCTTAGCATG 59.057 43.478 0.00 0.00 36.31 4.06
143 144 4.226427 TGAGCTTGAATGGTCTTAGCAT 57.774 40.909 0.00 0.00 38.04 3.79
144 145 3.701205 TGAGCTTGAATGGTCTTAGCA 57.299 42.857 0.00 0.00 35.70 3.49
145 146 4.006319 ACTTGAGCTTGAATGGTCTTAGC 58.994 43.478 0.00 0.00 35.68 3.09
146 147 5.702670 TCAACTTGAGCTTGAATGGTCTTAG 59.297 40.000 0.00 0.00 35.68 2.18
147 148 5.620206 TCAACTTGAGCTTGAATGGTCTTA 58.380 37.500 0.00 0.00 35.68 2.10
148 149 4.464008 TCAACTTGAGCTTGAATGGTCTT 58.536 39.130 0.00 0.00 35.68 3.01
149 150 4.070716 CTCAACTTGAGCTTGAATGGTCT 58.929 43.478 5.84 0.00 37.72 3.85
150 151 3.190118 CCTCAACTTGAGCTTGAATGGTC 59.810 47.826 12.69 0.00 42.98 4.02
151 152 3.152341 CCTCAACTTGAGCTTGAATGGT 58.848 45.455 12.69 0.00 42.98 3.55
152 153 3.415212 TCCTCAACTTGAGCTTGAATGG 58.585 45.455 12.69 0.00 42.98 3.16
153 154 4.082895 CCTTCCTCAACTTGAGCTTGAATG 60.083 45.833 12.69 5.56 42.98 2.67
154 155 4.077822 CCTTCCTCAACTTGAGCTTGAAT 58.922 43.478 12.69 0.00 42.98 2.57
155 156 3.117888 ACCTTCCTCAACTTGAGCTTGAA 60.118 43.478 12.69 10.00 42.98 2.69
156 157 2.439507 ACCTTCCTCAACTTGAGCTTGA 59.560 45.455 12.69 3.22 42.98 3.02
157 158 2.856222 ACCTTCCTCAACTTGAGCTTG 58.144 47.619 12.69 5.12 42.98 4.01
158 159 3.648545 AGTACCTTCCTCAACTTGAGCTT 59.351 43.478 12.69 0.00 42.98 3.74
159 160 3.243724 AGTACCTTCCTCAACTTGAGCT 58.756 45.455 12.69 0.00 42.98 4.09
160 161 3.259625 AGAGTACCTTCCTCAACTTGAGC 59.740 47.826 12.69 0.00 42.98 4.26
161 162 4.524714 TGAGAGTACCTTCCTCAACTTGAG 59.475 45.833 11.37 11.37 43.91 3.02
162 163 4.281182 GTGAGAGTACCTTCCTCAACTTGA 59.719 45.833 0.00 0.00 38.49 3.02
163 164 4.282195 AGTGAGAGTACCTTCCTCAACTTG 59.718 45.833 0.00 0.00 38.49 3.16
164 165 4.484912 AGTGAGAGTACCTTCCTCAACTT 58.515 43.478 0.00 0.00 38.49 2.66
165 166 4.120946 AGTGAGAGTACCTTCCTCAACT 57.879 45.455 0.00 0.00 38.49 3.16
166 167 4.525100 AGAAGTGAGAGTACCTTCCTCAAC 59.475 45.833 5.51 0.00 38.49 3.18
167 168 4.742012 AGAAGTGAGAGTACCTTCCTCAA 58.258 43.478 5.51 0.00 38.49 3.02
168 169 4.390129 AGAAGTGAGAGTACCTTCCTCA 57.610 45.455 5.51 0.00 34.87 3.86
169 170 5.014202 AGAAGAAGTGAGAGTACCTTCCTC 58.986 45.833 5.51 3.34 32.70 3.71
170 171 5.005628 AGAAGAAGTGAGAGTACCTTCCT 57.994 43.478 5.51 0.00 32.70 3.36
171 172 5.731957 AAGAAGAAGTGAGAGTACCTTCC 57.268 43.478 5.51 0.00 32.70 3.46
172 173 8.524487 TGATTAAGAAGAAGTGAGAGTACCTTC 58.476 37.037 0.00 0.00 0.00 3.46
173 174 8.423906 TGATTAAGAAGAAGTGAGAGTACCTT 57.576 34.615 0.00 0.00 0.00 3.50
174 175 8.423906 TTGATTAAGAAGAAGTGAGAGTACCT 57.576 34.615 0.00 0.00 0.00 3.08
195 196 9.807649 GGCATAAGACTTGTCATTTTTATTGAT 57.192 29.630 0.00 0.00 0.00 2.57
196 197 9.023962 AGGCATAAGACTTGTCATTTTTATTGA 57.976 29.630 0.00 0.00 0.00 2.57
197 198 9.643693 AAGGCATAAGACTTGTCATTTTTATTG 57.356 29.630 0.00 0.00 43.01 1.90
229 230 6.152831 GGAATATGGAGTGCAAGTACCTTTTT 59.847 38.462 0.00 0.00 0.00 1.94
230 231 5.652452 GGAATATGGAGTGCAAGTACCTTTT 59.348 40.000 0.00 0.00 0.00 2.27
231 232 5.193679 GGAATATGGAGTGCAAGTACCTTT 58.806 41.667 0.00 0.00 0.00 3.11
232 233 4.227300 TGGAATATGGAGTGCAAGTACCTT 59.773 41.667 0.00 0.00 0.00 3.50
233 234 3.780294 TGGAATATGGAGTGCAAGTACCT 59.220 43.478 0.00 0.00 0.00 3.08
234 235 3.877508 GTGGAATATGGAGTGCAAGTACC 59.122 47.826 0.00 0.00 0.00 3.34
235 236 4.770795 AGTGGAATATGGAGTGCAAGTAC 58.229 43.478 0.00 0.00 0.00 2.73
236 237 5.661312 AGTAGTGGAATATGGAGTGCAAGTA 59.339 40.000 0.00 0.00 0.00 2.24
237 238 4.471386 AGTAGTGGAATATGGAGTGCAAGT 59.529 41.667 0.00 0.00 0.00 3.16
238 239 5.028549 AGTAGTGGAATATGGAGTGCAAG 57.971 43.478 0.00 0.00 0.00 4.01
239 240 4.716784 AGAGTAGTGGAATATGGAGTGCAA 59.283 41.667 0.00 0.00 0.00 4.08
240 241 4.100035 CAGAGTAGTGGAATATGGAGTGCA 59.900 45.833 0.00 0.00 0.00 4.57
241 242 4.626042 CAGAGTAGTGGAATATGGAGTGC 58.374 47.826 0.00 0.00 0.00 4.40
242 243 4.100035 TGCAGAGTAGTGGAATATGGAGTG 59.900 45.833 0.00 0.00 0.00 3.51
243 244 4.290093 TGCAGAGTAGTGGAATATGGAGT 58.710 43.478 0.00 0.00 0.00 3.85
244 245 4.343526 ACTGCAGAGTAGTGGAATATGGAG 59.656 45.833 23.35 0.00 0.00 3.86
245 246 4.290093 ACTGCAGAGTAGTGGAATATGGA 58.710 43.478 23.35 0.00 0.00 3.41
246 247 4.679373 ACTGCAGAGTAGTGGAATATGG 57.321 45.455 23.35 0.00 0.00 2.74
247 248 5.521735 GTCAACTGCAGAGTAGTGGAATATG 59.478 44.000 23.35 0.00 30.26 1.78
248 249 5.187772 TGTCAACTGCAGAGTAGTGGAATAT 59.812 40.000 23.35 0.00 30.26 1.28
249 250 4.526650 TGTCAACTGCAGAGTAGTGGAATA 59.473 41.667 23.35 0.00 30.26 1.75
250 251 3.324846 TGTCAACTGCAGAGTAGTGGAAT 59.675 43.478 23.35 0.00 30.26 3.01
251 252 2.698274 TGTCAACTGCAGAGTAGTGGAA 59.302 45.455 23.35 0.17 30.26 3.53
252 253 2.316108 TGTCAACTGCAGAGTAGTGGA 58.684 47.619 23.35 0.00 0.00 4.02
253 254 2.820059 TGTCAACTGCAGAGTAGTGG 57.180 50.000 23.35 0.00 0.00 4.00
254 255 3.681897 GGATTGTCAACTGCAGAGTAGTG 59.318 47.826 23.35 9.94 0.00 2.74
255 256 3.324846 TGGATTGTCAACTGCAGAGTAGT 59.675 43.478 23.35 0.00 0.00 2.73
256 257 3.930336 TGGATTGTCAACTGCAGAGTAG 58.070 45.455 23.35 6.92 0.00 2.57
257 258 3.324846 ACTGGATTGTCAACTGCAGAGTA 59.675 43.478 23.35 1.14 35.13 2.59
258 259 2.105477 ACTGGATTGTCAACTGCAGAGT 59.895 45.455 23.35 6.11 35.13 3.24
259 260 2.775890 ACTGGATTGTCAACTGCAGAG 58.224 47.619 23.35 12.71 35.13 3.35
260 261 2.936919 ACTGGATTGTCAACTGCAGA 57.063 45.000 23.35 0.00 35.13 4.26
261 262 5.633830 AAATACTGGATTGTCAACTGCAG 57.366 39.130 13.48 13.48 36.93 4.41
262 263 5.121611 CGTAAATACTGGATTGTCAACTGCA 59.878 40.000 0.00 0.00 0.00 4.41
263 264 5.560148 CGTAAATACTGGATTGTCAACTGC 58.440 41.667 0.00 0.00 0.00 4.40
264 265 5.121611 TGCGTAAATACTGGATTGTCAACTG 59.878 40.000 0.00 0.00 0.00 3.16
265 266 5.242434 TGCGTAAATACTGGATTGTCAACT 58.758 37.500 0.00 0.00 0.00 3.16
266 267 5.539582 TGCGTAAATACTGGATTGTCAAC 57.460 39.130 0.00 0.00 0.00 3.18
267 268 5.390040 CGTTGCGTAAATACTGGATTGTCAA 60.390 40.000 0.00 0.00 0.00 3.18
268 269 4.092237 CGTTGCGTAAATACTGGATTGTCA 59.908 41.667 0.00 0.00 0.00 3.58
269 270 4.327898 TCGTTGCGTAAATACTGGATTGTC 59.672 41.667 0.00 0.00 0.00 3.18
270 271 4.247258 TCGTTGCGTAAATACTGGATTGT 58.753 39.130 0.00 0.00 0.00 2.71
271 272 4.565166 TCTCGTTGCGTAAATACTGGATTG 59.435 41.667 0.00 0.00 0.00 2.67
272 273 4.751060 TCTCGTTGCGTAAATACTGGATT 58.249 39.130 0.00 0.00 0.00 3.01
273 274 4.142227 ACTCTCGTTGCGTAAATACTGGAT 60.142 41.667 0.00 0.00 0.00 3.41
274 275 3.192001 ACTCTCGTTGCGTAAATACTGGA 59.808 43.478 0.00 0.00 0.00 3.86
275 276 3.508762 ACTCTCGTTGCGTAAATACTGG 58.491 45.455 0.00 0.00 0.00 4.00
276 277 6.291637 CCATTACTCTCGTTGCGTAAATACTG 60.292 42.308 0.00 0.00 30.83 2.74
277 278 5.747197 CCATTACTCTCGTTGCGTAAATACT 59.253 40.000 0.00 0.00 30.83 2.12
278 279 5.555818 GCCATTACTCTCGTTGCGTAAATAC 60.556 44.000 0.00 0.00 30.83 1.89
279 280 4.505191 GCCATTACTCTCGTTGCGTAAATA 59.495 41.667 0.00 0.00 30.83 1.40
280 281 3.308866 GCCATTACTCTCGTTGCGTAAAT 59.691 43.478 0.00 0.00 30.83 1.40
281 282 2.669434 GCCATTACTCTCGTTGCGTAAA 59.331 45.455 0.00 0.00 30.83 2.01
282 283 2.264813 GCCATTACTCTCGTTGCGTAA 58.735 47.619 0.00 0.00 31.49 3.18
283 284 1.796253 CGCCATTACTCTCGTTGCGTA 60.796 52.381 0.00 0.00 36.14 4.42
284 285 1.076533 CGCCATTACTCTCGTTGCGT 61.077 55.000 0.00 0.00 36.14 5.24
285 286 0.800683 TCGCCATTACTCTCGTTGCG 60.801 55.000 0.00 0.00 41.68 4.85
286 287 0.924090 CTCGCCATTACTCTCGTTGC 59.076 55.000 0.00 0.00 0.00 4.17
287 288 2.455032 CTCTCGCCATTACTCTCGTTG 58.545 52.381 0.00 0.00 0.00 4.10
288 289 1.405821 CCTCTCGCCATTACTCTCGTT 59.594 52.381 0.00 0.00 0.00 3.85
289 290 1.025812 CCTCTCGCCATTACTCTCGT 58.974 55.000 0.00 0.00 0.00 4.18
290 291 0.312416 CCCTCTCGCCATTACTCTCG 59.688 60.000 0.00 0.00 0.00 4.04
291 292 0.032815 GCCCTCTCGCCATTACTCTC 59.967 60.000 0.00 0.00 0.00 3.20
292 293 1.739338 CGCCCTCTCGCCATTACTCT 61.739 60.000 0.00 0.00 0.00 3.24
293 294 1.300233 CGCCCTCTCGCCATTACTC 60.300 63.158 0.00 0.00 0.00 2.59
294 295 2.815308 CGCCCTCTCGCCATTACT 59.185 61.111 0.00 0.00 0.00 2.24
302 303 3.081311 TTCAGATGGCGCCCTCTCG 62.081 63.158 28.86 22.71 0.00 4.04
303 304 1.522580 GTTCAGATGGCGCCCTCTC 60.523 63.158 28.86 19.90 0.00 3.20
304 305 2.586792 GTTCAGATGGCGCCCTCT 59.413 61.111 26.48 26.48 0.00 3.69
305 306 2.514824 GGTTCAGATGGCGCCCTC 60.515 66.667 26.77 24.52 0.00 4.30
306 307 4.115199 GGGTTCAGATGGCGCCCT 62.115 66.667 26.77 15.82 36.49 5.19
307 308 3.721370 ATGGGTTCAGATGGCGCCC 62.721 63.158 26.77 9.73 39.73 6.13
308 309 2.124151 ATGGGTTCAGATGGCGCC 60.124 61.111 22.73 22.73 0.00 6.53
309 310 2.484062 CCATGGGTTCAGATGGCGC 61.484 63.158 2.85 0.00 33.01 6.53
310 311 1.825191 CCCATGGGTTCAGATGGCG 60.825 63.158 23.93 0.00 38.28 5.69
311 312 2.129785 GCCCATGGGTTCAGATGGC 61.130 63.158 31.58 10.34 38.28 4.40
312 313 0.105862 ATGCCCATGGGTTCAGATGG 60.106 55.000 31.58 3.44 39.18 3.51
313 314 2.662535 TATGCCCATGGGTTCAGATG 57.337 50.000 31.58 4.22 37.65 2.90
314 315 2.820485 GCATATGCCCATGGGTTCAGAT 60.820 50.000 31.58 20.71 37.65 2.90
315 316 1.479205 GCATATGCCCATGGGTTCAGA 60.479 52.381 31.58 19.37 37.65 3.27
316 317 0.963962 GCATATGCCCATGGGTTCAG 59.036 55.000 31.58 18.29 37.65 3.02
317 318 0.261109 TGCATATGCCCATGGGTTCA 59.739 50.000 31.58 21.99 41.18 3.18
318 319 0.675633 GTGCATATGCCCATGGGTTC 59.324 55.000 31.58 16.76 41.18 3.62
319 320 0.760189 GGTGCATATGCCCATGGGTT 60.760 55.000 31.58 21.23 41.18 4.11
320 321 1.152483 GGTGCATATGCCCATGGGT 60.152 57.895 31.58 15.92 41.18 4.51
321 322 1.909781 GGGTGCATATGCCCATGGG 60.910 63.158 27.87 27.87 44.23 4.00
322 323 3.781760 GGGTGCATATGCCCATGG 58.218 61.111 26.58 4.14 44.23 3.66
326 327 1.070601 GGAAAATGGGTGCATATGCCC 59.929 52.381 24.54 22.41 45.04 5.36
327 328 1.761784 TGGAAAATGGGTGCATATGCC 59.238 47.619 24.54 15.25 41.18 4.40
328 329 3.540314 TTGGAAAATGGGTGCATATGC 57.460 42.857 21.09 21.09 42.50 3.14
329 330 5.939296 ACTTTTTGGAAAATGGGTGCATATG 59.061 36.000 0.00 0.00 0.00 1.78
330 331 5.939296 CACTTTTTGGAAAATGGGTGCATAT 59.061 36.000 0.00 0.00 0.00 1.78
331 332 5.163258 ACACTTTTTGGAAAATGGGTGCATA 60.163 36.000 5.17 0.00 38.00 3.14
332 333 4.136051 CACTTTTTGGAAAATGGGTGCAT 58.864 39.130 0.00 0.00 0.00 3.96
333 334 3.054802 ACACTTTTTGGAAAATGGGTGCA 60.055 39.130 5.17 0.00 38.00 4.57
334 335 3.540617 ACACTTTTTGGAAAATGGGTGC 58.459 40.909 5.17 0.00 38.00 5.01
335 336 7.800155 AAATACACTTTTTGGAAAATGGGTG 57.200 32.000 13.24 11.20 39.23 4.61
336 337 9.907229 TTAAAATACACTTTTTGGAAAATGGGT 57.093 25.926 9.72 9.72 41.04 4.51
338 339 9.877137 GCTTAAAATACACTTTTTGGAAAATGG 57.123 29.630 0.00 0.00 31.54 3.16
341 342 8.596380 CGTGCTTAAAATACACTTTTTGGAAAA 58.404 29.630 0.00 0.00 31.54 2.29
342 343 7.760340 ACGTGCTTAAAATACACTTTTTGGAAA 59.240 29.630 0.00 0.00 31.54 3.13
343 344 7.259161 ACGTGCTTAAAATACACTTTTTGGAA 58.741 30.769 0.00 0.00 31.54 3.53
344 345 6.797454 ACGTGCTTAAAATACACTTTTTGGA 58.203 32.000 0.00 0.00 31.54 3.53
345 346 7.458038 AACGTGCTTAAAATACACTTTTTGG 57.542 32.000 0.00 0.00 31.54 3.28
384 385 9.491675 TGTATGCATGACATTTTCTTTTGATTT 57.508 25.926 10.16 0.00 40.38 2.17
385 386 9.661563 ATGTATGCATGACATTTTCTTTTGATT 57.338 25.926 10.16 0.00 40.38 2.57
402 403 6.930164 ACACACATTTTCAAACATGTATGCAT 59.070 30.769 3.79 3.79 32.05 3.96
403 404 6.279123 ACACACATTTTCAAACATGTATGCA 58.721 32.000 0.00 0.00 32.05 3.96
404 405 6.768029 ACACACATTTTCAAACATGTATGC 57.232 33.333 0.00 0.00 32.05 3.14
405 406 7.409238 GCGTACACACATTTTCAAACATGTATG 60.409 37.037 0.00 0.04 34.55 2.39
406 407 6.580791 GCGTACACACATTTTCAAACATGTAT 59.419 34.615 0.00 0.00 32.16 2.29
407 408 5.910166 GCGTACACACATTTTCAAACATGTA 59.090 36.000 0.00 0.00 32.16 2.29
408 409 4.737765 GCGTACACACATTTTCAAACATGT 59.262 37.500 0.00 0.00 33.72 3.21
409 410 4.143844 CGCGTACACACATTTTCAAACATG 60.144 41.667 0.00 0.00 0.00 3.21
410 411 3.971871 CGCGTACACACATTTTCAAACAT 59.028 39.130 0.00 0.00 0.00 2.71
411 412 3.355270 CGCGTACACACATTTTCAAACA 58.645 40.909 0.00 0.00 0.00 2.83
412 413 2.717011 CCGCGTACACACATTTTCAAAC 59.283 45.455 4.92 0.00 0.00 2.93
413 414 2.355132 ACCGCGTACACACATTTTCAAA 59.645 40.909 4.92 0.00 0.00 2.69
414 415 1.941294 ACCGCGTACACACATTTTCAA 59.059 42.857 4.92 0.00 0.00 2.69
415 416 1.584175 ACCGCGTACACACATTTTCA 58.416 45.000 4.92 0.00 0.00 2.69
416 417 2.475864 TGTACCGCGTACACACATTTTC 59.524 45.455 14.67 0.00 42.99 2.29
417 418 2.481854 TGTACCGCGTACACACATTTT 58.518 42.857 14.67 0.00 42.99 1.82
418 419 2.151881 TGTACCGCGTACACACATTT 57.848 45.000 14.67 0.00 42.99 2.32
419 420 2.151881 TTGTACCGCGTACACACATT 57.848 45.000 17.22 0.00 46.71 2.71
420 421 2.063266 CTTTGTACCGCGTACACACAT 58.937 47.619 17.22 0.00 46.71 3.21
421 422 1.202394 ACTTTGTACCGCGTACACACA 60.202 47.619 17.22 6.29 46.71 3.72
422 423 1.490621 ACTTTGTACCGCGTACACAC 58.509 50.000 17.22 4.04 46.71 3.82
423 424 2.222007 AACTTTGTACCGCGTACACA 57.778 45.000 17.22 10.03 46.71 3.72
424 425 3.590720 AAAACTTTGTACCGCGTACAC 57.409 42.857 17.22 7.78 46.71 2.90
425 426 4.987285 TCATAAAACTTTGTACCGCGTACA 59.013 37.500 14.67 14.67 45.63 2.90
426 427 5.514059 TCATAAAACTTTGTACCGCGTAC 57.486 39.130 4.92 8.57 39.24 3.67
427 428 6.536731 TTTCATAAAACTTTGTACCGCGTA 57.463 33.333 4.92 0.00 0.00 4.42
428 429 5.421212 TTTCATAAAACTTTGTACCGCGT 57.579 34.783 4.92 0.00 0.00 6.01
429 430 6.735263 TTTTTCATAAAACTTTGTACCGCG 57.265 33.333 0.00 0.00 0.00 6.46
449 450 7.886830 GCGAAGGCAAAAGAAAAAGACATTTTT 60.887 33.333 0.00 0.00 43.71 1.94
450 451 6.456853 GCGAAGGCAAAAGAAAAAGACATTTT 60.457 34.615 0.00 0.00 40.56 1.82
451 452 5.006649 GCGAAGGCAAAAGAAAAAGACATTT 59.993 36.000 0.00 0.00 39.62 2.32
452 453 4.507756 GCGAAGGCAAAAGAAAAAGACATT 59.492 37.500 0.00 0.00 39.62 2.71
453 454 4.051237 GCGAAGGCAAAAGAAAAAGACAT 58.949 39.130 0.00 0.00 39.62 3.06
454 455 3.443976 GCGAAGGCAAAAGAAAAAGACA 58.556 40.909 0.00 0.00 39.62 3.41
477 478 6.225981 AGAAGCACTGGAATTTGTCTTTTT 57.774 33.333 0.00 0.00 0.00 1.94
478 479 5.859205 AGAAGCACTGGAATTTGTCTTTT 57.141 34.783 0.00 0.00 0.00 2.27
479 480 6.959639 TTAGAAGCACTGGAATTTGTCTTT 57.040 33.333 0.00 0.00 0.00 2.52
480 481 6.959639 TTTAGAAGCACTGGAATTTGTCTT 57.040 33.333 0.00 0.00 0.00 3.01
481 482 8.635765 TTATTTAGAAGCACTGGAATTTGTCT 57.364 30.769 0.00 0.00 0.00 3.41
482 483 9.294030 CATTATTTAGAAGCACTGGAATTTGTC 57.706 33.333 0.00 0.00 0.00 3.18
483 484 8.806146 ACATTATTTAGAAGCACTGGAATTTGT 58.194 29.630 0.00 0.00 0.00 2.83
484 485 9.643693 AACATTATTTAGAAGCACTGGAATTTG 57.356 29.630 0.00 0.00 0.00 2.32
485 486 9.860898 GAACATTATTTAGAAGCACTGGAATTT 57.139 29.630 0.00 0.00 0.00 1.82
486 487 8.470002 GGAACATTATTTAGAAGCACTGGAATT 58.530 33.333 0.00 0.00 0.00 2.17
487 488 7.615365 TGGAACATTATTTAGAAGCACTGGAAT 59.385 33.333 0.00 0.00 0.00 3.01
488 489 6.945435 TGGAACATTATTTAGAAGCACTGGAA 59.055 34.615 0.00 0.00 0.00 3.53
489 490 6.374333 GTGGAACATTATTTAGAAGCACTGGA 59.626 38.462 0.00 0.00 44.52 3.86
490 491 6.555315 GTGGAACATTATTTAGAAGCACTGG 58.445 40.000 0.00 0.00 44.52 4.00
491 492 6.092122 TCGTGGAACATTATTTAGAAGCACTG 59.908 38.462 0.00 0.00 44.52 3.66
492 493 6.092259 GTCGTGGAACATTATTTAGAAGCACT 59.908 38.462 0.00 0.00 44.52 4.40
493 494 6.128391 TGTCGTGGAACATTATTTAGAAGCAC 60.128 38.462 0.00 0.00 44.52 4.40
494 495 5.935206 TGTCGTGGAACATTATTTAGAAGCA 59.065 36.000 0.00 0.00 44.52 3.91
495 496 6.417191 TGTCGTGGAACATTATTTAGAAGC 57.583 37.500 0.00 0.00 44.52 3.86
532 533 1.483827 TCATTGTGGCCTGTGCAAAAA 59.516 42.857 3.32 0.00 40.13 1.94
533 534 1.117994 TCATTGTGGCCTGTGCAAAA 58.882 45.000 3.32 0.00 40.13 2.44
534 535 1.117994 TTCATTGTGGCCTGTGCAAA 58.882 45.000 3.32 0.00 40.13 3.68
535 536 1.068895 CTTTCATTGTGGCCTGTGCAA 59.931 47.619 3.32 4.67 40.13 4.08
536 537 0.675083 CTTTCATTGTGGCCTGTGCA 59.325 50.000 3.32 0.00 40.13 4.57
537 538 0.675633 ACTTTCATTGTGGCCTGTGC 59.324 50.000 3.32 0.00 0.00 4.57
538 539 4.789012 ATAACTTTCATTGTGGCCTGTG 57.211 40.909 3.32 0.00 0.00 3.66
539 540 5.806654 AAATAACTTTCATTGTGGCCTGT 57.193 34.783 3.32 0.00 0.00 4.00
540 541 6.147656 GGAAAAATAACTTTCATTGTGGCCTG 59.852 38.462 3.32 0.00 37.09 4.85
541 542 6.230472 GGAAAAATAACTTTCATTGTGGCCT 58.770 36.000 3.32 0.00 37.09 5.19
542 543 5.120053 CGGAAAAATAACTTTCATTGTGGCC 59.880 40.000 0.00 0.00 37.09 5.36
543 544 5.694458 ACGGAAAAATAACTTTCATTGTGGC 59.306 36.000 0.00 0.00 37.09 5.01
544 545 6.920758 TCACGGAAAAATAACTTTCATTGTGG 59.079 34.615 11.76 0.00 37.09 4.17
545 546 7.922505 TCACGGAAAAATAACTTTCATTGTG 57.077 32.000 0.00 0.00 37.09 3.33
546 547 8.813282 GTTTCACGGAAAAATAACTTTCATTGT 58.187 29.630 1.37 0.00 37.09 2.71
547 548 9.030301 AGTTTCACGGAAAAATAACTTTCATTG 57.970 29.630 1.37 0.00 37.09 2.82
548 549 9.594478 AAGTTTCACGGAAAAATAACTTTCATT 57.406 25.926 0.00 0.00 37.09 2.57
549 550 9.594478 AAAGTTTCACGGAAAAATAACTTTCAT 57.406 25.926 0.00 0.00 40.02 2.57
550 551 8.989653 AAAGTTTCACGGAAAAATAACTTTCA 57.010 26.923 0.00 0.00 40.02 2.69
553 554 8.974408 GCATAAAGTTTCACGGAAAAATAACTT 58.026 29.630 0.00 0.00 37.41 2.66
554 555 8.138712 TGCATAAAGTTTCACGGAAAAATAACT 58.861 29.630 0.00 0.00 33.14 2.24
555 556 8.211838 GTGCATAAAGTTTCACGGAAAAATAAC 58.788 33.333 0.00 0.00 33.14 1.89
556 557 7.113684 CGTGCATAAAGTTTCACGGAAAAATAA 59.886 33.333 16.45 0.00 45.76 1.40
557 558 6.579292 CGTGCATAAAGTTTCACGGAAAAATA 59.421 34.615 16.45 0.00 45.76 1.40
558 559 5.401079 CGTGCATAAAGTTTCACGGAAAAAT 59.599 36.000 16.45 0.00 45.76 1.82
559 560 4.735822 CGTGCATAAAGTTTCACGGAAAAA 59.264 37.500 16.45 0.00 45.76 1.94
560 561 4.283678 CGTGCATAAAGTTTCACGGAAAA 58.716 39.130 16.45 0.00 45.76 2.29
561 562 3.879427 CGTGCATAAAGTTTCACGGAAA 58.121 40.909 16.45 0.00 45.76 3.13
562 563 3.529634 CGTGCATAAAGTTTCACGGAA 57.470 42.857 16.45 0.00 45.76 4.30
566 567 2.993545 TGTGCGTGCATAAAGTTTCAC 58.006 42.857 0.00 0.00 0.00 3.18
567 568 3.913548 ATGTGCGTGCATAAAGTTTCA 57.086 38.095 0.00 0.00 0.00 2.69
568 569 5.216566 TCTATGTGCGTGCATAAAGTTTC 57.783 39.130 0.00 0.00 31.76 2.78
569 570 5.049060 TGTTCTATGTGCGTGCATAAAGTTT 60.049 36.000 0.00 0.00 31.76 2.66
570 571 4.454161 TGTTCTATGTGCGTGCATAAAGTT 59.546 37.500 0.00 0.00 31.76 2.66
571 572 4.000325 TGTTCTATGTGCGTGCATAAAGT 59.000 39.130 0.00 0.00 31.76 2.66
572 573 4.598406 TGTTCTATGTGCGTGCATAAAG 57.402 40.909 0.00 0.00 31.76 1.85
573 574 4.394610 ACATGTTCTATGTGCGTGCATAAA 59.605 37.500 0.00 0.00 31.76 1.40
574 575 3.938334 ACATGTTCTATGTGCGTGCATAA 59.062 39.130 0.00 0.00 31.76 1.90
575 576 3.530535 ACATGTTCTATGTGCGTGCATA 58.469 40.909 0.00 0.00 0.00 3.14
576 577 2.358957 ACATGTTCTATGTGCGTGCAT 58.641 42.857 0.00 0.12 0.00 3.96
577 578 1.807139 ACATGTTCTATGTGCGTGCA 58.193 45.000 0.00 0.00 0.00 4.57
578 579 3.000322 GTCTACATGTTCTATGTGCGTGC 60.000 47.826 2.30 0.00 33.76 5.34
579 580 4.173256 TGTCTACATGTTCTATGTGCGTG 58.827 43.478 2.30 0.00 33.76 5.34
580 581 4.450082 TGTCTACATGTTCTATGTGCGT 57.550 40.909 2.30 0.00 33.76 5.24
581 582 5.402568 GGTATGTCTACATGTTCTATGTGCG 59.597 44.000 2.30 0.00 37.15 5.34
582 583 5.696724 GGGTATGTCTACATGTTCTATGTGC 59.303 44.000 2.30 0.00 37.15 4.57
583 584 5.920840 CGGGTATGTCTACATGTTCTATGTG 59.079 44.000 2.30 0.00 37.15 3.21
584 585 5.509163 GCGGGTATGTCTACATGTTCTATGT 60.509 44.000 2.30 0.00 37.15 2.29
585 586 4.923871 GCGGGTATGTCTACATGTTCTATG 59.076 45.833 2.30 0.00 37.15 2.23
586 587 4.321008 CGCGGGTATGTCTACATGTTCTAT 60.321 45.833 2.30 0.00 37.15 1.98
587 588 3.004002 CGCGGGTATGTCTACATGTTCTA 59.996 47.826 2.30 0.00 37.15 2.10
588 589 2.223735 CGCGGGTATGTCTACATGTTCT 60.224 50.000 2.30 0.00 37.15 3.01
589 590 2.124903 CGCGGGTATGTCTACATGTTC 58.875 52.381 2.30 0.00 37.15 3.18
590 591 1.479323 ACGCGGGTATGTCTACATGTT 59.521 47.619 12.47 0.00 37.15 2.71
591 592 1.108776 ACGCGGGTATGTCTACATGT 58.891 50.000 12.47 2.69 37.15 3.21
592 593 3.358707 TTACGCGGGTATGTCTACATG 57.641 47.619 13.56 0.00 37.15 3.21
593 594 4.595762 AATTACGCGGGTATGTCTACAT 57.404 40.909 13.56 0.63 40.22 2.29
594 595 4.389890 AAATTACGCGGGTATGTCTACA 57.610 40.909 13.56 0.00 0.00 2.74
595 596 5.723492 AAAAATTACGCGGGTATGTCTAC 57.277 39.130 13.56 0.00 0.00 2.59
648 649 9.964303 CGGATACATATGAATCCATTTTGAAAA 57.036 29.630 10.38 0.00 41.57 2.29
649 650 8.575589 CCGGATACATATGAATCCATTTTGAAA 58.424 33.333 10.38 0.00 41.57 2.69
650 651 7.941790 TCCGGATACATATGAATCCATTTTGAA 59.058 33.333 10.38 0.00 41.57 2.69
651 652 7.457561 TCCGGATACATATGAATCCATTTTGA 58.542 34.615 10.38 0.00 41.57 2.69
652 653 7.686438 TCCGGATACATATGAATCCATTTTG 57.314 36.000 10.38 0.00 41.57 2.44
653 654 8.884124 AATCCGGATACATATGAATCCATTTT 57.116 30.769 19.48 0.00 41.57 1.82
654 655 8.108999 TGAATCCGGATACATATGAATCCATTT 58.891 33.333 19.48 0.00 41.57 2.32
655 656 7.632861 TGAATCCGGATACATATGAATCCATT 58.367 34.615 19.48 0.00 41.57 3.16
656 657 7.199167 TGAATCCGGATACATATGAATCCAT 57.801 36.000 19.48 0.00 41.57 3.41
657 658 6.619329 TGAATCCGGATACATATGAATCCA 57.381 37.500 19.48 0.00 41.57 3.41
658 659 6.708054 GGATGAATCCGGATACATATGAATCC 59.292 42.308 19.48 15.76 37.19 3.01
659 660 7.721286 GGATGAATCCGGATACATATGAATC 57.279 40.000 19.48 8.72 37.19 2.52
684 685 3.142838 GCGGGCCATGAAGTGCAT 61.143 61.111 4.39 0.00 37.85 3.96
685 686 3.866379 AAGCGGGCCATGAAGTGCA 62.866 57.895 4.39 0.00 0.00 4.57
686 687 2.158561 AAAAGCGGGCCATGAAGTGC 62.159 55.000 4.39 0.00 0.00 4.40
687 688 0.109132 GAAAAGCGGGCCATGAAGTG 60.109 55.000 4.39 0.00 0.00 3.16
688 689 0.539438 TGAAAAGCGGGCCATGAAGT 60.539 50.000 4.39 0.00 0.00 3.01
689 690 0.819582 ATGAAAAGCGGGCCATGAAG 59.180 50.000 4.39 0.00 0.00 3.02
690 691 0.817013 GATGAAAAGCGGGCCATGAA 59.183 50.000 4.39 0.00 0.00 2.57
691 692 0.323269 TGATGAAAAGCGGGCCATGA 60.323 50.000 4.39 0.00 0.00 3.07
692 693 0.179129 GTGATGAAAAGCGGGCCATG 60.179 55.000 4.39 0.00 0.00 3.66
693 694 1.656818 CGTGATGAAAAGCGGGCCAT 61.657 55.000 4.39 0.00 0.00 4.40
694 695 2.331893 CGTGATGAAAAGCGGGCCA 61.332 57.895 4.39 0.00 0.00 5.36
695 696 2.253414 GACGTGATGAAAAGCGGGCC 62.253 60.000 0.00 0.00 0.00 5.80
696 697 1.134694 GACGTGATGAAAAGCGGGC 59.865 57.895 0.00 0.00 0.00 6.13
697 698 1.289109 ACGACGTGATGAAAAGCGGG 61.289 55.000 0.00 0.00 0.00 6.13
698 699 0.511221 AACGACGTGATGAAAAGCGG 59.489 50.000 0.00 0.00 0.00 5.52
699 700 1.580439 CAACGACGTGATGAAAAGCG 58.420 50.000 0.00 0.00 0.00 4.68
700 701 1.263217 ACCAACGACGTGATGAAAAGC 59.737 47.619 0.00 0.00 0.00 3.51
701 702 2.349438 CCACCAACGACGTGATGAAAAG 60.349 50.000 0.00 0.00 32.77 2.27
712 713 1.597663 CAAGTTGACTCCACCAACGAC 59.402 52.381 0.00 0.00 46.10 4.34
717 718 2.120312 TGGTACAAGTTGACTCCACCA 58.880 47.619 10.54 11.04 31.92 4.17
897 899 5.261661 CGTGGTCTCGTCTTGTTATACTAC 58.738 45.833 0.00 0.00 0.00 2.73
942 944 0.181350 CAAGCAGGTATGGGAGGGTC 59.819 60.000 0.00 0.00 0.00 4.46
965 967 1.605753 GAACTGTGGACCAAAGACCC 58.394 55.000 19.18 3.11 0.00 4.46
1042 1044 1.141881 TCGGCTCATTCTTCTCGCC 59.858 57.895 0.00 0.00 37.40 5.54
1213 1215 2.911143 GATGACCACGGAGGCCAT 59.089 61.111 5.01 0.00 43.96 4.40
1380 1382 0.103026 TCTTGATGGAGATGTCGGCG 59.897 55.000 0.00 0.00 0.00 6.46
1389 1391 1.337823 ACGTTCGGGTTCTTGATGGAG 60.338 52.381 0.00 0.00 0.00 3.86
1419 1421 1.886313 CTCGCTCCGGTCGTAGCTA 60.886 63.158 15.93 3.34 36.56 3.32
1727 1729 2.257034 CGCAGTCCGTAGTTTTACTCC 58.743 52.381 0.00 0.00 0.00 3.85
1791 1794 2.100749 ACAAAAAGAAACAGAAGGGGCG 59.899 45.455 0.00 0.00 0.00 6.13
1829 1832 8.519492 TCAAAACAGTGTGAAGAAAAAGAAAG 57.481 30.769 0.00 0.00 0.00 2.62
1837 1840 5.436175 TCCATCTCAAAACAGTGTGAAGAA 58.564 37.500 0.00 0.00 0.00 2.52
1841 1844 4.042062 AGGATCCATCTCAAAACAGTGTGA 59.958 41.667 15.82 0.00 0.00 3.58
1842 1845 4.330250 AGGATCCATCTCAAAACAGTGTG 58.670 43.478 15.82 0.00 0.00 3.82
1843 1846 4.583871 GAGGATCCATCTCAAAACAGTGT 58.416 43.478 15.82 0.00 0.00 3.55
1959 1962 7.330900 AGCAACTGATTTCTATCCTTTCATG 57.669 36.000 0.00 0.00 0.00 3.07
1962 1965 7.467947 GCCTAAGCAACTGATTTCTATCCTTTC 60.468 40.741 0.00 0.00 39.53 2.62
1999 2002 3.541996 TGCTCTTGTTCTGTCAAGTGA 57.458 42.857 15.36 0.00 43.44 3.41
2022 2025 7.489757 AGTCTGTCTAGAAATCGATTTTGTAGC 59.510 37.037 23.49 19.43 39.72 3.58
2030 2033 5.533154 CCTACCAGTCTGTCTAGAAATCGAT 59.467 44.000 0.00 0.00 34.01 3.59
2090 2094 6.478344 AGCGAGAAAATACTAGAAAGAGCATG 59.522 38.462 0.00 0.00 0.00 4.06
2122 2126 0.935898 CTGTTCATGAGAGATGGCGC 59.064 55.000 0.00 0.00 0.00 6.53
2125 2129 5.350504 AGGTTACTGTTCATGAGAGATGG 57.649 43.478 10.07 0.00 0.00 3.51
2153 2157 2.914059 TGTGATCCGAGAGTCACGATA 58.086 47.619 11.78 0.00 45.88 2.92
2162 2166 7.737972 TTTTGTAAATTCTTGTGATCCGAGA 57.262 32.000 0.00 0.00 0.00 4.04
2166 2170 7.945033 TGCTTTTTGTAAATTCTTGTGATCC 57.055 32.000 0.00 0.00 0.00 3.36
2173 2177 7.382218 CGACCTCAATGCTTTTTGTAAATTCTT 59.618 33.333 0.00 0.00 0.00 2.52
2175 2179 6.399986 GCGACCTCAATGCTTTTTGTAAATTC 60.400 38.462 0.00 0.00 0.00 2.17
2193 2197 0.512085 CTACCTCGATACGCGACCTC 59.488 60.000 15.93 5.09 45.59 3.85
2196 2200 0.654683 ACACTACCTCGATACGCGAC 59.345 55.000 15.93 2.51 45.59 5.19
2198 2202 1.063027 TCAACACTACCTCGATACGCG 59.937 52.381 3.53 3.53 42.69 6.01
2201 2205 8.404000 TCTAATCTTTCAACACTACCTCGATAC 58.596 37.037 0.00 0.00 0.00 2.24
2202 2206 8.515695 TCTAATCTTTCAACACTACCTCGATA 57.484 34.615 0.00 0.00 0.00 2.92
2212 2217 7.674240 GCCGTGACTTATCTAATCTTTCAACAC 60.674 40.741 0.00 0.00 0.00 3.32
2216 2221 6.222038 AGCCGTGACTTATCTAATCTTTCA 57.778 37.500 0.00 0.00 0.00 2.69
2217 2222 8.644318 TTTAGCCGTGACTTATCTAATCTTTC 57.356 34.615 0.00 0.00 0.00 2.62
2346 2354 5.685068 CGTGCTAATCAAACACATCACAAAA 59.315 36.000 0.00 0.00 33.89 2.44
2371 2380 0.252197 TTTCTTAAGGGAGGCGGCTC 59.748 55.000 29.56 29.56 0.00 4.70
2375 2384 1.472878 GGCTTTTTCTTAAGGGAGGCG 59.527 52.381 1.85 0.00 0.00 5.52
2381 2390 5.536538 AGGAACTCTTGGCTTTTTCTTAAGG 59.463 40.000 1.85 0.00 0.00 2.69
2406 2415 3.443045 GGCGCCAGTGGGATGTTG 61.443 66.667 24.80 0.00 35.59 3.33
2407 2416 3.925630 CTGGCGCCAGTGGGATGTT 62.926 63.158 42.09 0.00 39.10 2.71
2408 2417 4.415150 CTGGCGCCAGTGGGATGT 62.415 66.667 42.09 0.00 39.10 3.06
2445 2454 0.982852 CCATGGCTCTAGGGTCACCA 60.983 60.000 0.00 0.00 40.13 4.17
2450 2459 3.164269 CCGCCATGGCTCTAGGGT 61.164 66.667 33.07 0.00 39.32 4.34
2464 2473 4.819761 TGAGATCCACTGCGCCGC 62.820 66.667 4.18 0.00 0.00 6.53
2468 2477 1.446907 AAAGCTTGAGATCCACTGCG 58.553 50.000 0.00 0.00 32.11 5.18
2485 2494 1.223487 GAGCCCACCCGCTGATAAA 59.777 57.895 0.00 0.00 39.87 1.40
2489 2498 1.271840 AAATAGAGCCCACCCGCTGA 61.272 55.000 0.00 0.00 39.87 4.26
2491 2500 0.331616 AAAAATAGAGCCCACCCGCT 59.668 50.000 0.00 0.00 43.42 5.52
2511 2520 9.588096 ACCCTAACAAAACTCAAAAGAATATCT 57.412 29.630 0.00 0.00 0.00 1.98
2515 2524 9.161629 CAAAACCCTAACAAAACTCAAAAGAAT 57.838 29.630 0.00 0.00 0.00 2.40
2516 2525 8.151596 ACAAAACCCTAACAAAACTCAAAAGAA 58.848 29.630 0.00 0.00 0.00 2.52
2517 2526 7.672240 ACAAAACCCTAACAAAACTCAAAAGA 58.328 30.769 0.00 0.00 0.00 2.52
2546 2555 0.247736 CCCGTCTTGTCTTCCTGAGG 59.752 60.000 0.00 0.00 0.00 3.86
2558 2567 3.703127 GGAAGCCGTCCCCGTCTT 61.703 66.667 0.00 0.00 41.10 3.01
2567 2576 2.859165 TTTCATCTTCAGGAAGCCGT 57.141 45.000 4.15 0.00 38.28 5.68
2590 2599 0.927029 AGGGCTAGATGGGGAAAACC 59.073 55.000 0.00 0.00 39.11 3.27
2594 2603 0.759436 GACGAGGGCTAGATGGGGAA 60.759 60.000 0.00 0.00 0.00 3.97
2601 2610 1.451567 CACCGAGACGAGGGCTAGA 60.452 63.158 0.00 0.00 0.00 2.43
2609 2618 1.527611 AGACACACCACCGAGACGA 60.528 57.895 0.00 0.00 0.00 4.20
2611 2620 1.006102 CCAGACACACCACCGAGAC 60.006 63.158 0.00 0.00 0.00 3.36
2616 2625 2.665185 GACGCCAGACACACCACC 60.665 66.667 0.00 0.00 0.00 4.61
2635 2644 2.603473 CCTCCACAGGTCCACCGA 60.603 66.667 0.00 0.00 42.08 4.69
2663 2672 6.165577 GCAAATCCACCAAGAACATATTTGT 58.834 36.000 0.00 0.00 36.00 2.83
2666 2675 5.622007 CGTGCAAATCCACCAAGAACATATT 60.622 40.000 0.00 0.00 32.10 1.28
2669 2678 2.030007 CGTGCAAATCCACCAAGAACAT 60.030 45.455 0.00 0.00 32.10 2.71
2689 2698 1.521423 GCCGAATTACGAACAGATCCG 59.479 52.381 0.00 0.00 45.77 4.18
2697 2706 2.164219 AGGAACGTAGCCGAATTACGAA 59.836 45.455 16.38 0.00 44.91 3.85
2717 2726 6.385033 GGAAAGATCCAATTTGAAGACACAG 58.615 40.000 0.00 0.00 45.79 3.66
2737 2746 5.830000 TGAAGAGAATCGTAGATCGGAAA 57.170 39.130 0.00 0.00 45.12 3.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.