>input_sequence_69464
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-----------------------------------------ATGGCGACCGTCGGGTTCGGGCCGTACAGCGTCGCCACA
GCGGGCGAGAAGAATGAGCCGACGAGGCCGCTCGCCTGCCCGTCCCCGTCCGTCCACCCGGCGACCGATGTGGACATCGA
GGTCCAGCATGCCGCCGCGACCACCGCCAAGCGCCCGCGCTCCACGGGGTGCCTCCGCGGCCGCCGGTCCGTGCTCTGCT
GCGGCGGCTGCTGCATGGCCTCCGTGGTCATCGCCGGGATCGTCGCCCTCGTGCTCGCCCTCACCGTGTTCAAGGTCAAG
GACCCCGTCTTCACCATGAACCGCGTCACCCTGGAGGACGTCGACGGCGACTTCCTCGGCGCGGACGAGCGGCACCCGGT
GTCCGTCAACGCCACGCTCAACGCCGACATCTCCATCAAGAACCCGAACGTGGCCTCGTTTAGCTACGACCGGAGCGAGA
CGAACTTCTACTACAAGGGGGAGACGGTCGGCGTGGCGTACGCCCCCGACGGCGAGGTCGGCGCCGACCGGACCGTGCGG
ATGAACGTCACGCTCGACGCGCTCGCCGACCGGATCTCCCCCAACGTCAACGTCACCGACCTCATCTTCGGCCAGAGCCA
GGACTACGACCTCACCAGCTACACGGAGATCAGCGGGAGAGTGAGCGTGCTGGGGATCTACAAGAGGGACCTCGACATCA
AGGTGAACTGCTCCATTACCTTGGAGGTCAGCGCCTTTAGCTCAGTGCGGAGTAAAACTACGGACTGCGTTGCAAACGTG
AAGTAA--------------------------------------------------------------------------
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>chr3A_1_TraesCS3A01G279000
AAACGCGTTTTGGAGCTATGATTTCTTTTTGCCACGATTTCCACCAATGTGATTTCATGATGAAACTTTGCAAGCTATCT
AAACTTTTCTTAAAGTTTTCCACACACTAGAATTTTTAGAATATGATTTCTAATTTACTGTTCATGCTAAGACCATTCAA
GCTCAAGTTGAGGAAGGTACTCTCACTTCTTCTTAATCAATAAAAATGACAAGTCTTATGCCTTGTTTAAAAAAGGTACT
TGCACTCCATATTCCACTACTCTGCAGTTGACAATCCAGTATTTACGCAACGAGAGTAATGGCGAGAGGGCGCCATCTGA
ACCCATGGGCATATGCACCCATTTTCCAAAAAGTGTATTTTAAGCACGTTTTAAAATGTCAAAAAAATCAAAAGAAAATG
TCATGCATACATGTTTGAAAATGTGTGTACGCGGTACAAAGTTTTATGAAAAAATGTCTTTTTCTTTTGCCTTCGCAAAA
AAGACAAATTCCAGTGCTTCTAAATAATGTTCCACGACATAATTTTTTGTCTTTTTTGCACAGGCCACAATGAAAGTTAT
TTTTCCGTGAAACTTTATGCACGCACATAGAACATGTAGACATACCCGCGTAATTTTTTTCAGATTTTTTTAAAATTTAA
AAATATATTTTTCAAAATGGATTCATATGTATCCGGATTCATCCATGCACTTCATGGCCCGCTTTTCATCACGTCGTTGG
TGGAGTCAACTTGTACCAACGGAAGCCTGCATGCTTCATTTATTAACCGGCAATCCACAAGCCTGCCAAGTCCACCGGGC
GGGGCGCGTTTGCTCTGTTCCGTCAGTCTCACAGAACGAACAGCAAC-ACGTACATGCCGCGCCCGGCCCGCCCAACACG
ACTTGTGCAAAATCCACCGTAGTATAACAAGACGAGACCACGCCATCTGGCGACGGACCAGACGACCCTCCCATACCTGC
TTGCTCGGGTCTTTGGTCCACAGTTCCATTCCACGTACGCCATGGCGACCGTCGGGTTCGGGCCGTACAGCGTCGCCACA
GCGGGCGAGAAGAATGAGCCGACGAGGCCGCTCGCCTGCCCGTCCCCGTCCGTCCACCCGGCGACCGATGTGGACATCGA
GGTCCAGCATGCCGCCGCGACCACCGCCAAGCGCCCGCGCTCCACGGGGTGCCTCCGCGGCCGCCGGTCCGTGCTCTGCT
GCGGCGGCTGCTGCATGGCCTCCGTGGTCATCGCCGGGATCGTCGCCCTCGTGCTCGCCCTCACCGTGTTCAAGGTCAAG
GACCCCGTCTTCACCATGAACCGCGTCACCCTGGAGGACGTCGACGGCGACTTCCTCGGCGCGGACGAGCGGCACCCGGT
GTCCGTCAACGCCACGCTCAACGCCGACATCTCCATCAAGAACCCGAACGTGGCCTCGTTTAGCTACGACCGGAGCGAGA
CGAACTTCTACTACAAGGGGGAGACGGTCGGCGTGGCGTACGCCCCCGACGGCGAGGTCGGCGCCGACCGGACCGTGCGG
ATGAACGTCACGCTCGACGCGCTCGCCGACCGGATCTCCCCCAACGTCAACGTCACCGACCTCATCTTCGGCCAGAGCCA
GGACTACGACCTCACCAGCTACACGGAGATCAGCGGGAGAGTGAGCGTGCTGGGGATCTACAAGAGGGACCTCGACATCA
AGGTGAACTGCTCCATTACCTTGGAGGTCAGCGCCTTTAGCTCAGTGCGGAGTAAAACTACGGACTGCGTTGCAAACGTG
AAGTAACCGATCAT-TGCTTATCAGGGGCAGGACGCCCCTTCTGTTTCTTTTTGTTCTCTATATATCCTCCCTTTCTTTT
TCTTCACACTGTTTTGAGATGGATCCTCCTTTTCTTGGACCTATGTATCGTTATGTAATTATTATTATTATTAGTTACCT
TTTAGGGGATTTTCATATAATTATATCAGGGTGTTCCACTTCATGAAAGGATAGAAATCAGTTGCTTAGGCCAGTTATTG
TTCACTTGACAGAACAAGAGCAAAGCTACAAAATCGATTTCTAGACAGACTGGTAGGTTAACAACCTTG-TTTTTGTAGT
CCTTTTGCTGACGCATGCTCTTTCTAGTATTTTCTCGCTTCATCTGCGCCATCTCTCATGAACAGTAACCTTTTTTTATC
GTGACTCTCGGATCACAAGAATTTACAAAAAGCATTGAGGTCGCGT-ATCGAGGTAGTGTTGAAAGATTAGATAAGTCAC
GGCTAAAA---AAAGAGATAAACCATGCGGAAGGCATGGTGATGTACTATTTCAAGACTCAAACAAATGTGACAAGATTT
CAAATAAAACATGGGGAGTTGTTAGACGTTGGGTTTTGTGATGTGTTTGATTAGCA-CGGAGCCGCCTCCCTTAAGAAAA
AGCCAAGAGTTCCTCAACATCCCACTGGCGCCAGCGCCGGTCCGCCTCGTCTTTGGTGACCCTAGAGCCATGGCGGCGCA
GTGGATCTCAAGCTTTATCAGCGGGTGGGCTCTATTTTTAGATATTCTTTTGAGTTTTGTTAGGGTTTTGTCCTCCTCAG
GAAGACAAGACGGGGACGGCTTCCTGAAGATGAAATAAGGTTTTCCCCATCTAGCCCTCGTCTCGGTGGTGTGTCTGGCG
TCGTCGGTGGACCTGTGGAGGTGTGTCTCCGACAAATATGTTCTTGGTGGATTTGCACGGATCTGTTCGTAATTCGGCTA
CGTTCCTGTGTCTTCAAATTGGATCTTTCCGATCTACGATTCTCTTCATCAGC
>chr3B_703
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--------------------------------------------------------------TTTTCATCACATCGTAGG
TGGAGTCAACTTGTACCAACGGAAGCCTGCATGCTTCATTTATTAACCGGCAATCCACAAGCCTGCCAAGTCCAGCGGGC
GGGGCGCGTTTGCTCTGTTCCGTCAGTCTCACAGAACGAACAGCAACTACGTACATGCCGCGCCCGGCCCGCCCAACACG
ACTTGTGCAAAATCCACCATAGTATAACAAGACGAGACCACGCCATTTGGCGACGGACCAGACTACCCTCCCATACCTGC
TTGCTCAGGTCTTTGGTCCACAGTTCCATTCCACGTACGCCATGGCGACCGTCGGGTTCGGGCCGTACAGCGTCGCCACA
GCGAGCGAGAAGAACGAGCCGACGAGGCCGCTCGCCTACCCGTCCCCGTCCGTTCACCCGGCGACCGACGAGGACATCGA
GGTCCAGGATGCCGCCGCGACCACCGGCAAGCGCCCGCGCTCCACGCAGTGCTTCTGCGGCCGCCGGTCCGTGCTCTGCT
GCAGCGGCTGCTGCGTGGCCTCCGTGGTCATTGCCGGGATCGTCGCCCTCGTGCTCGCCCTCACCGTGTTCAAGGTCAAG
GACCCCGTCTTCACCATGAACCGCGTCACCCTGGAGGACGTCGACGGCGACTTCCTCGGCGCGGACGAGCGGCACCCGGT
GTCCGTCAACGCCACCCTCAATGCCGACATATCCATCAAGAACCCGAACGTGGCCTCGTTCAGCTACGACCGGAGCGAGA
CGAACTTCTACTACAAGGGGGAGACGGTCGGCGTGGCGTACGCCCCCGACGGCGAGGTCGGCGCCGACCGGACCGTGCGG
ATGAACGTCACGCTCGACGCGCTCGCCGACCGGATCTCCCCCAACATCAATGTCACCGACCTCATCTTCGGCCAGAGCCA
GGACTACGACCTCACCAGCTACACGGAGATCAGCGGGAGAGTGAGCGTGCTGGGGATCTACAAGAGGGACCTCGACATCA
AGGTGAACTGCTCTATTACCTTGGAGGTCAGCGCCTTTAGCTCAGTGCAGAGTAAAACTACCGACTGCGTTGCAAACGTG
AAGTAACCGATCATTTGCTTATCAGGGTCAGGAAGCCCCTCCTGTTTCTTTTTGTTCTCTATATATCCTCCATTTCTTTC
TCT----ACTGTTTTGAGATGGATCCTCCTTTTCTTTGACCCATGTATCGTTATGTAATTATTACTCCTTCCATACGAAA
ATACTTGTC---------------ATCAGGGTGTTCCACTTTATAAAAGGATAGAAATCAGTTGCTTAGGCCAGTTATTG
TCCACTTGACAGAACAAGAGCAAACCTACAAATTCGATTTCTAGACAGACTGGTAGGTTAACAACCTTGTTTTTTGTAGT
CCTTTTGCTGACGAATGCTCTTTCTAGTATTTTCTCGCTTCATCTCCGTCATCTCTCACGAACAGTAACCTTTTTTGATC
GTGACACTC-GATCACTAAAATTTACAAAAAGCATTAAGCATGCTGCATCGAGGTACTGTACAAAGATGAGATAAGTCAC
CACTGAAAAGGAAAGAGATAAACCATGCGGAAGGCATGGTGAGCA---ATTTCAAGACTCAAAAAAATGTGACAAGATTT
CAA-TAAAACATGGAGAGTTGTTAGATGTTGGGATTTATGATGTGTTTGGTTAG--------------------------
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>chr3D_2226
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---------------------------------------------------------------------AGATAAGTCAC
CGCTAAAAAAC----AGATAAACCATGCGGAAGGCATGCTGATGTACTATTTCAAGACTCAAACAAATGTGACAAGATTT
CAAATAAAACATGGGGAGTTGTTAGACGTTGGGACTTGTGATGTGTTTGATTAGCACCGTAGCTGCCTCACTTAAGAAAA
AGCCAAGAGTTCCTTGGCATCCCGCTGGCGCCGGAGCCGGTCCGCCTCGTCTTCGGTGGCCTTAGGGCCATGACGGTGCG
GTGGATCTCAACCCTTACCGGCGGG---------------------CTTTTGAGTTTTGTTAGAGTTTTGTCCTTCTCAG
GAAGACGAGACGGGGGCGGCTTCCTGAAGATGAAATAAAGTTCTCCCCACCTAGCCCCCATCTCAGTGGTGTGTCTAGCG
TCGCCCGTGGACCTGTGGAGGTATGTCTCCGGCAGATCTGTTCTTGGTGGATTTGCATGGATCTGGTCGTAATTCGGCTA
CGTTCGTGTGTCTTCAAATTGGATCATTCCGATCTACGGTTCTCTTCATCAGC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S----S--
--------------------------------------------------------------------------S-----
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------------------S---------------------------S----------------S----------------
------S-------------------------------------------------------------------------
---S----------S----------------------S---------------S--------------S-S---------
-------S------------------S-------------------SS----S--S------------------------
--S-----------S----------------S------------------------------------------------
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---------------S-----S--------S-----------------------------S-------------------
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---------------------------------------------S----S-----------------------------
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-------------S----------------------------------S------------S------------------
---------------------------S-----S------S------------------------------S-------S
---SSSS-----------------------------S----S----------------------S-SS-SSS-SSSSSSS
S-SSSS-SSSSSSSSSSSSSSSSS-----------------S--S-----------------------------------
-S----------------------S-------S-----------------------------------------------
-------------S-------------------------------S--S---------S-----------------S---
-----S---S------S-S-----------------S--SSS--SS----------S---SS------S-----------
S-------------------------------------------------------------------------------
---------------------------------S-------------------------S---S-----S----------
--------------SSS------S--------S-S------------------S----S--S---S------S---S--S
-----------S-S---S-S-----SSSSSSSSSSSSSSSSSSSSS-----------------S----------S-----
------S--------S----------------------S---S------S-------S-S----S-----------S---
---S-S----------------S--------S--S--S-------------------S-------S--------------
-----S-------------------S------------S--------------
>forward_311
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---------------------------------------------------GAGAGTAATGGCGAGAGGGC---------
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>reverse_1382
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---------------------CGCCGACATCTCCATCAAGA---------------------------------------
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>forward_332
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------------------------------------------------------------------------CCATCTGA
ACCCATGGGCAT--------------------------------------------------------------------
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>reverse_2197
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------------------------------------GAGGTCGCGTATCGAGGTAG------------------------
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