Multiple sequence alignment - TraesCS3A01G273800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G273800 chr3A 100.000 3579 0 0 1 3579 502508064 502511642 0.000000e+00 6610
1 TraesCS3A01G273800 chr3B 91.573 2302 129 31 262 2525 493652489 493654763 0.000000e+00 3116
2 TraesCS3A01G273800 chr3B 90.267 1048 57 19 2561 3579 493654868 493655899 0.000000e+00 1328
3 TraesCS3A01G273800 chr3B 93.377 453 23 6 1 449 493652047 493652496 0.000000e+00 664
4 TraesCS3A01G273800 chr3D 91.926 2118 99 26 262 2337 378575711 378577798 0.000000e+00 2898
5 TraesCS3A01G273800 chr3D 93.326 929 36 10 2669 3578 378578183 378579104 0.000000e+00 1349
6 TraesCS3A01G273800 chr3D 94.900 451 18 4 1 449 378575271 378575718 0.000000e+00 701
7 TraesCS3A01G273800 chr3D 89.474 190 10 2 2379 2568 378577802 378577981 7.730000e-57 231


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G273800 chr3A 502508064 502511642 3578 False 6610.000000 6610 100.0000 1 3579 1 chr3A.!!$F1 3578
1 TraesCS3A01G273800 chr3B 493652047 493655899 3852 False 1702.666667 3116 91.7390 1 3579 3 chr3B.!!$F1 3578
2 TraesCS3A01G273800 chr3D 378575271 378579104 3833 False 1294.750000 2898 92.4065 1 3578 4 chr3D.!!$F1 3577

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
954 1173 0.032615 TGGCCTTTTGTGGGTTCTGT 60.033 50.000 3.32 0.0 0.0 3.41 F
981 1200 0.328258 ACTGGTGTTGCAGTATCCCC 59.672 55.000 0.00 0.0 0.0 4.81 F
982 1201 0.744414 CTGGTGTTGCAGTATCCCCG 60.744 60.000 0.00 0.0 0.0 5.73 F
1539 1758 2.126618 TACCACGCGCTCTTCACG 60.127 61.111 5.73 0.0 0.0 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2136 2355 0.315251 CACCTCTCGTGCTCTCAACA 59.685 55.0 0.0 0.0 35.18 3.33 R
2137 2356 0.389166 CCACCTCTCGTGCTCTCAAC 60.389 60.0 0.0 0.0 41.53 3.18 R
2138 2357 0.827925 ACCACCTCTCGTGCTCTCAA 60.828 55.0 0.0 0.0 41.53 3.02 R
2958 3389 1.209621 CCGTTCCATCTCCCCCTTTA 58.790 55.0 0.0 0.0 0.00 1.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 8.247562 GTGACACTATAGGATATCAGGATCAAC 58.752 40.741 4.83 0.00 0.00 3.18
111 115 7.658261 TCCGTACATCTATTCACCAATTCTAG 58.342 38.462 0.00 0.00 0.00 2.43
135 139 1.837439 TCCTGCCACTTGGTATACCTG 59.163 52.381 22.41 16.60 37.57 4.00
160 164 7.093771 TGGGAAGAAGCAATTTTATTCTCTTCC 60.094 37.037 16.21 16.21 45.77 3.46
221 227 6.471233 TTTCACACACCAAATGGACAATTA 57.529 33.333 6.42 0.00 38.94 1.40
287 293 4.803329 AGCACATCTCATTTCCCCTAAT 57.197 40.909 0.00 0.00 0.00 1.73
343 349 4.701765 AGCATCAGCCTATTAGAACACAG 58.298 43.478 0.00 0.00 43.56 3.66
375 381 6.183360 GCTCATGAATAGTGGGAAGAAGTCTA 60.183 42.308 0.00 0.00 0.00 2.59
398 404 0.389817 TTCCATCGAGGCACAGTTCG 60.390 55.000 0.00 0.00 37.29 3.95
403 409 2.081212 CGAGGCACAGTTCGTCGAC 61.081 63.158 9.34 5.18 42.33 4.20
449 456 7.706607 TCATCAACCATCTAATCTCAGTAAACG 59.293 37.037 0.00 0.00 0.00 3.60
450 457 6.338146 TCAACCATCTAATCTCAGTAAACGG 58.662 40.000 0.00 0.00 0.00 4.44
451 458 5.277857 ACCATCTAATCTCAGTAAACGGG 57.722 43.478 0.00 0.00 0.00 5.28
452 459 4.101119 ACCATCTAATCTCAGTAAACGGGG 59.899 45.833 0.00 0.00 0.00 5.73
454 461 3.101437 TCTAATCTCAGTAAACGGGGCA 58.899 45.455 0.00 0.00 0.00 5.36
455 462 2.403252 AATCTCAGTAAACGGGGCAG 57.597 50.000 0.00 0.00 0.00 4.85
456 463 1.276622 ATCTCAGTAAACGGGGCAGT 58.723 50.000 0.00 0.00 0.00 4.40
457 464 0.606604 TCTCAGTAAACGGGGCAGTC 59.393 55.000 0.00 0.00 0.00 3.51
458 465 0.320374 CTCAGTAAACGGGGCAGTCA 59.680 55.000 0.00 0.00 0.00 3.41
459 466 0.759959 TCAGTAAACGGGGCAGTCAA 59.240 50.000 0.00 0.00 0.00 3.18
461 468 2.568062 TCAGTAAACGGGGCAGTCAATA 59.432 45.455 0.00 0.00 0.00 1.90
462 469 2.936498 CAGTAAACGGGGCAGTCAATAG 59.064 50.000 0.00 0.00 0.00 1.73
495 704 2.349275 GTCGAACTAGACTCTGACGGAG 59.651 54.545 9.88 9.88 46.87 4.63
497 706 2.713877 GAACTAGACTCTGACGGAGGT 58.286 52.381 15.76 5.10 45.83 3.85
743 961 3.491652 GCGAAGAAGCGGAGTGGC 61.492 66.667 0.00 0.00 0.00 5.01
838 1056 0.678048 ATCCTTTCTGCAAGCCGACC 60.678 55.000 0.00 0.00 0.00 4.79
882 1101 0.095935 GTGATGTGATGTGAGCGTGC 59.904 55.000 0.00 0.00 0.00 5.34
913 1132 3.060000 GGTTGCCTAACCGGGTGC 61.060 66.667 0.00 0.00 46.30 5.01
925 1144 2.961768 GGGTGCGGGATTGTGTTG 59.038 61.111 0.00 0.00 0.00 3.33
954 1173 0.032615 TGGCCTTTTGTGGGTTCTGT 60.033 50.000 3.32 0.00 0.00 3.41
958 1177 1.956477 CCTTTTGTGGGTTCTGTGGAG 59.044 52.381 0.00 0.00 0.00 3.86
980 1199 2.027561 TGTACTGGTGTTGCAGTATCCC 60.028 50.000 0.00 0.00 36.46 3.85
981 1200 0.328258 ACTGGTGTTGCAGTATCCCC 59.672 55.000 0.00 0.00 0.00 4.81
982 1201 0.744414 CTGGTGTTGCAGTATCCCCG 60.744 60.000 0.00 0.00 0.00 5.73
1017 1236 3.781770 GATGAGCACGCTCCTCCGG 62.782 68.421 16.12 0.00 42.09 5.14
1080 1299 4.148825 CTCCCCTTCGCCACCTCG 62.149 72.222 0.00 0.00 0.00 4.63
1224 1443 3.670629 CTCCCTCGCCTCCACCTCT 62.671 68.421 0.00 0.00 0.00 3.69
1539 1758 2.126618 TACCACGCGCTCTTCACG 60.127 61.111 5.73 0.00 0.00 4.35
1633 1852 3.160047 AGATGCTGGAGGAGGGCG 61.160 66.667 0.00 0.00 0.00 6.13
2197 2419 3.269178 AGTTAGCAGAGAATTCAGCAGC 58.731 45.455 8.44 7.80 38.22 5.25
2199 2421 1.740297 AGCAGAGAATTCAGCAGCTG 58.260 50.000 17.10 17.10 38.22 4.24
2200 2422 0.099082 GCAGAGAATTCAGCAGCTGC 59.901 55.000 31.53 31.53 41.38 5.25
2202 2424 2.017782 CAGAGAATTCAGCAGCTGCAT 58.982 47.619 38.24 21.83 45.16 3.96
2204 2426 2.423892 AGAGAATTCAGCAGCTGCATTG 59.576 45.455 38.24 28.32 45.16 2.82
2205 2427 1.476891 AGAATTCAGCAGCTGCATTGG 59.523 47.619 38.24 24.06 45.16 3.16
2206 2428 1.475280 GAATTCAGCAGCTGCATTGGA 59.525 47.619 38.24 24.86 45.16 3.53
2207 2429 1.776662 ATTCAGCAGCTGCATTGGAT 58.223 45.000 38.24 25.92 45.16 3.41
2208 2430 0.815095 TTCAGCAGCTGCATTGGATG 59.185 50.000 38.24 26.19 45.16 3.51
2210 2432 0.530744 CAGCAGCTGCATTGGATGTT 59.469 50.000 38.24 13.55 45.16 2.71
2211 2433 1.067142 CAGCAGCTGCATTGGATGTTT 60.067 47.619 38.24 12.75 45.16 2.83
2221 2443 5.979993 TGCATTGGATGTTTTATCTGCATT 58.020 33.333 0.00 0.00 33.80 3.56
2261 2486 4.288670 TGATTCTCGAGTATCCGTTCAC 57.711 45.455 24.09 4.16 0.00 3.18
2277 2502 7.033530 TCCGTTCACAAATGTAAGATGTTTT 57.966 32.000 0.00 0.00 0.00 2.43
2280 2505 7.537306 CCGTTCACAAATGTAAGATGTTTTAGG 59.463 37.037 0.00 0.00 0.00 2.69
2337 2562 7.639039 TGAATGAACAAGCACACTAAAACTAG 58.361 34.615 0.00 0.00 0.00 2.57
2340 2565 7.011828 TGAACAAGCACACTAAAACTAGAAC 57.988 36.000 0.00 0.00 0.00 3.01
2348 2573 6.585322 GCACACTAAAACTAGAACGTGTCTAT 59.415 38.462 0.00 0.00 38.20 1.98
2547 2802 1.011574 GCGCGAACAACACGTCTTT 60.012 52.632 12.10 0.00 0.00 2.52
2555 2810 4.198787 CGAACAACACGTCTTTTAAACACG 59.801 41.667 14.49 14.49 39.48 4.49
2576 2870 2.622436 GGGTGGAATGAAAGAGACGAG 58.378 52.381 0.00 0.00 0.00 4.18
2582 2876 6.284459 GTGGAATGAAAGAGACGAGGAATAT 58.716 40.000 0.00 0.00 0.00 1.28
2587 2881 6.392625 TGAAAGAGACGAGGAATATACCAG 57.607 41.667 0.00 0.00 0.00 4.00
2618 2965 7.103641 TGGCTAAATTCTTCTTCTCGTATTGT 58.896 34.615 0.00 0.00 0.00 2.71
2623 2970 5.591643 TTCTTCTTCTCGTATTGTTGTGC 57.408 39.130 0.00 0.00 0.00 4.57
2675 3030 0.736325 ATGCCGACACAACTCTACGC 60.736 55.000 0.00 0.00 0.00 4.42
2680 3035 1.615107 GACACAACTCTACGCACGCC 61.615 60.000 0.00 0.00 0.00 5.68
2744 3155 0.778815 CGACTCAACAAGACTCGCAC 59.221 55.000 0.00 0.00 0.00 5.34
2758 3171 3.116300 ACTCGCACGCAAATAGTATCAG 58.884 45.455 0.00 0.00 0.00 2.90
2759 3172 1.858458 TCGCACGCAAATAGTATCAGC 59.142 47.619 0.00 0.00 0.00 4.26
2779 3208 5.190528 TCAGCTTACCCTTTCATCTTCTGAT 59.809 40.000 0.00 0.00 32.72 2.90
2899 3328 7.196331 AGTTGCTCTTACAAAGTTGCTTTTAG 58.804 34.615 0.00 0.00 30.60 1.85
2956 3387 4.623932 TGTTTGTCAGGCTCATTCTACT 57.376 40.909 0.00 0.00 0.00 2.57
2957 3388 4.973168 TGTTTGTCAGGCTCATTCTACTT 58.027 39.130 0.00 0.00 0.00 2.24
2958 3389 5.376625 TGTTTGTCAGGCTCATTCTACTTT 58.623 37.500 0.00 0.00 0.00 2.66
2961 3392 7.500892 TGTTTGTCAGGCTCATTCTACTTTAAA 59.499 33.333 0.00 0.00 0.00 1.52
3007 3438 3.558608 TTGTTTCTCCCCCAAATGGAT 57.441 42.857 0.00 0.00 37.39 3.41
3143 3574 0.693049 GGGGCTCCTTCTCAGAACAA 59.307 55.000 0.00 0.00 0.00 2.83
3166 3597 3.138283 TCTTTGATGTGTTCCTTGGGAGT 59.862 43.478 0.00 0.00 31.21 3.85
3224 3655 3.288092 TCTAGCTTATCAAGAGCACCGA 58.712 45.455 0.00 0.00 42.56 4.69
3309 3740 5.298777 GTCGGATAGAGTAGTTCTTTGCCTA 59.701 44.000 0.00 0.00 37.36 3.93
3324 3755 9.547753 GTTCTTTGCCTATAAGATTGTGATAGA 57.452 33.333 0.00 0.00 32.09 1.98
3413 3845 8.040132 AGAAAATACTGAACTCCAATGAGAGAG 58.960 37.037 5.89 0.00 41.42 3.20
3414 3846 7.487822 AAATACTGAACTCCAATGAGAGAGA 57.512 36.000 5.89 0.00 41.42 3.10
3415 3847 6.713762 ATACTGAACTCCAATGAGAGAGAG 57.286 41.667 5.89 0.00 41.42 3.20
3416 3848 4.671831 ACTGAACTCCAATGAGAGAGAGA 58.328 43.478 5.89 0.00 41.42 3.10
3417 3849 4.706476 ACTGAACTCCAATGAGAGAGAGAG 59.294 45.833 5.89 0.00 41.42 3.20
3418 3850 4.928263 TGAACTCCAATGAGAGAGAGAGA 58.072 43.478 5.89 0.00 41.42 3.10
3429 3861 4.646945 TGAGAGAGAGAGAGAGAGAGAGAC 59.353 50.000 0.00 0.00 0.00 3.36
3485 3917 1.074752 GAGAAAGAGCAACAGGAGCG 58.925 55.000 0.00 0.00 37.01 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 8.026026 CCTATAGTGTCACATGATGCTTAGTAG 58.974 40.741 5.62 0.00 0.00 2.57
22 23 7.724061 TCCTATAGTGTCACATGATGCTTAGTA 59.276 37.037 5.62 0.00 0.00 1.82
23 24 6.551227 TCCTATAGTGTCACATGATGCTTAGT 59.449 38.462 5.62 0.00 0.00 2.24
24 25 6.986250 TCCTATAGTGTCACATGATGCTTAG 58.014 40.000 5.62 0.00 0.00 2.18
25 26 6.976934 TCCTATAGTGTCACATGATGCTTA 57.023 37.500 5.62 0.00 0.00 3.09
61 62 5.104259 AGCTGTAGGGAGGAAATACAAAG 57.896 43.478 0.00 0.00 0.00 2.77
111 115 2.789409 ATACCAAGTGGCAGGAGTTC 57.211 50.000 0.00 0.00 39.32 3.01
135 139 7.123397 AGGAAGAGAATAAAATTGCTTCTTCCC 59.877 37.037 20.72 8.41 46.96 3.97
160 164 5.185454 TCATATTGACTGGTGCCTTTGTAG 58.815 41.667 0.00 0.00 0.00 2.74
221 227 8.897872 ATTGAAGCATGAAGAAAAAGTCAATT 57.102 26.923 0.00 0.00 31.00 2.32
343 349 2.877168 CCACTATTCATGAGCTTCAGGC 59.123 50.000 0.00 0.00 42.19 4.85
375 381 2.795329 ACTGTGCCTCGATGGAATTTT 58.205 42.857 5.24 0.00 38.35 1.82
398 404 0.527817 CGGATACTTGGCCTGTCGAC 60.528 60.000 9.11 9.11 0.00 4.20
403 409 0.464036 TAGTGCGGATACTTGGCCTG 59.536 55.000 3.32 0.00 32.19 4.85
449 456 2.789409 ACAGTTCTATTGACTGCCCC 57.211 50.000 4.30 0.00 35.08 5.80
450 457 4.072131 TGAAACAGTTCTATTGACTGCCC 58.928 43.478 4.30 0.00 35.08 5.36
451 458 4.377431 CGTGAAACAGTTCTATTGACTGCC 60.377 45.833 4.30 0.00 35.74 4.85
452 459 4.211374 ACGTGAAACAGTTCTATTGACTGC 59.789 41.667 4.30 0.00 35.74 4.40
454 461 4.680110 CGACGTGAAACAGTTCTATTGACT 59.320 41.667 0.00 0.00 35.74 3.41
455 462 4.678287 TCGACGTGAAACAGTTCTATTGAC 59.322 41.667 0.00 0.00 35.74 3.18
456 463 4.862350 TCGACGTGAAACAGTTCTATTGA 58.138 39.130 0.00 0.00 35.74 2.57
457 464 5.175126 AGTTCGACGTGAAACAGTTCTATTG 59.825 40.000 11.11 0.00 38.60 1.90
458 465 5.287226 AGTTCGACGTGAAACAGTTCTATT 58.713 37.500 11.11 0.00 38.60 1.73
459 466 4.868067 AGTTCGACGTGAAACAGTTCTAT 58.132 39.130 11.11 0.00 38.60 1.98
461 468 3.160777 AGTTCGACGTGAAACAGTTCT 57.839 42.857 11.11 0.00 38.60 3.01
462 469 4.146100 GTCTAGTTCGACGTGAAACAGTTC 59.854 45.833 11.11 0.00 38.60 3.01
495 704 6.650390 AGCACATTTGTATTTTCCATTGAACC 59.350 34.615 0.00 0.00 0.00 3.62
497 706 8.801299 TCTAGCACATTTGTATTTTCCATTGAA 58.199 29.630 0.00 0.00 0.00 2.69
656 874 1.731720 CTGTCTGTCTAAGGCTTGGC 58.268 55.000 10.69 4.11 0.00 4.52
662 880 4.159321 TCTGATTGAGCTGTCTGTCTAAGG 59.841 45.833 0.00 0.00 0.00 2.69
771 989 4.135153 CCGGCGACTCCTCCACTG 62.135 72.222 9.30 0.00 0.00 3.66
853 1071 2.093606 ACATCACATCACAGAGGCTCAG 60.094 50.000 18.26 11.76 0.00 3.35
913 1132 2.182614 GACGGCACAACACAATCCCG 62.183 60.000 0.00 0.00 41.31 5.14
954 1173 0.833949 TGCAACACCAGTACACTCCA 59.166 50.000 0.00 0.00 0.00 3.86
1224 1443 1.682684 GAAGAGGAGGCGGAGGTCA 60.683 63.158 0.00 0.00 0.00 4.02
2016 2235 0.318699 TGACCACTCTTTCAGCGTCG 60.319 55.000 0.00 0.00 30.36 5.12
2094 2313 0.523546 CGTCCTCGTCGTCTTGGATG 60.524 60.000 0.00 0.00 0.00 3.51
2125 2344 2.017623 GCTCTCAACAGCAGCATCCAT 61.018 52.381 0.00 0.00 39.43 3.41
2135 2354 0.600557 ACCTCTCGTGCTCTCAACAG 59.399 55.000 0.00 0.00 0.00 3.16
2136 2355 0.315251 CACCTCTCGTGCTCTCAACA 59.685 55.000 0.00 0.00 35.18 3.33
2137 2356 0.389166 CCACCTCTCGTGCTCTCAAC 60.389 60.000 0.00 0.00 41.53 3.18
2138 2357 0.827925 ACCACCTCTCGTGCTCTCAA 60.828 55.000 0.00 0.00 41.53 3.02
2139 2358 1.228583 ACCACCTCTCGTGCTCTCA 60.229 57.895 0.00 0.00 41.53 3.27
2197 2419 5.001237 TGCAGATAAAACATCCAATGCAG 57.999 39.130 0.00 0.00 37.50 4.41
2199 2421 5.235616 CCAATGCAGATAAAACATCCAATGC 59.764 40.000 0.00 0.00 0.00 3.56
2200 2422 6.575267 TCCAATGCAGATAAAACATCCAATG 58.425 36.000 0.00 0.00 0.00 2.82
2202 2424 6.795144 ATCCAATGCAGATAAAACATCCAA 57.205 33.333 0.00 0.00 0.00 3.53
2204 2426 8.496707 AAAAATCCAATGCAGATAAAACATCC 57.503 30.769 0.00 0.00 0.00 3.51
2248 2473 7.277981 ACATCTTACATTTGTGAACGGATACTC 59.722 37.037 0.00 0.00 0.00 2.59
2304 2529 6.987992 AGTGTGCTTGTTCATTCATTTCAATT 59.012 30.769 0.00 0.00 0.00 2.32
2368 2593 6.936968 AAGATGTCCTACAGTAACCTCTTT 57.063 37.500 0.00 0.00 27.71 2.52
2369 2594 9.884814 ATATAAGATGTCCTACAGTAACCTCTT 57.115 33.333 7.63 7.63 34.00 2.85
2370 2595 9.884814 AATATAAGATGTCCTACAGTAACCTCT 57.115 33.333 0.00 0.00 0.00 3.69
2384 2609 6.591935 TCCCTCCACACAAATATAAGATGTC 58.408 40.000 0.00 0.00 0.00 3.06
2504 2729 6.258727 CGTAGTTGCAGGTGATAATTCAAGAT 59.741 38.462 0.00 0.00 32.48 2.40
2547 2802 2.953284 TCATTCCACCCCGTGTTTAA 57.047 45.000 0.00 0.00 0.00 1.52
2555 2810 1.278127 TCGTCTCTTTCATTCCACCCC 59.722 52.381 0.00 0.00 0.00 4.95
2587 2881 5.257262 AGAAGAAGAATTTAGCCAGTTCCC 58.743 41.667 0.00 0.00 0.00 3.97
2623 2970 3.531538 ACAGGTTGGTGCTCATATTACG 58.468 45.455 0.00 0.00 0.00 3.18
2675 3030 2.176546 CATGGCGTCAAAGGCGTG 59.823 61.111 0.00 0.00 45.05 5.34
2744 3155 4.632153 AGGGTAAGCTGATACTATTTGCG 58.368 43.478 0.00 0.00 0.00 4.85
2779 3208 3.820467 CAGTGGATTGCACTAAAACCTCA 59.180 43.478 10.71 0.00 0.00 3.86
2956 3387 2.025699 CCGTTCCATCTCCCCCTTTAAA 60.026 50.000 0.00 0.00 0.00 1.52
2957 3388 1.562475 CCGTTCCATCTCCCCCTTTAA 59.438 52.381 0.00 0.00 0.00 1.52
2958 3389 1.209621 CCGTTCCATCTCCCCCTTTA 58.790 55.000 0.00 0.00 0.00 1.85
2961 3392 3.090532 GCCGTTCCATCTCCCCCT 61.091 66.667 0.00 0.00 0.00 4.79
3007 3438 7.064609 CCTGAAGAATAAGCAAATTACAGACGA 59.935 37.037 0.00 0.00 0.00 4.20
3143 3574 4.202609 ACTCCCAAGGAACACATCAAAGAT 60.203 41.667 0.00 0.00 0.00 2.40
3166 3597 4.618635 TCAATGGGCCAGATTTTTATGGA 58.381 39.130 13.78 0.00 39.02 3.41
3265 3696 6.884295 TCCGACATGAAAATGTTAGGATTTCT 59.116 34.615 0.00 0.00 37.02 2.52
3413 3845 9.950496 ATATATTTCTGTCTCTCTCTCTCTCTC 57.050 37.037 0.00 0.00 0.00 3.20
3485 3917 5.491070 TGTGGATGTGCAGGAATATATAGC 58.509 41.667 0.00 0.00 0.00 2.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.