Multiple sequence alignment - TraesCS3A01G273400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G273400 chr3A 100.000 2210 0 0 1 2210 502393163 502390954 0.000000e+00 4082.0
1 TraesCS3A01G273400 chr3A 82.775 209 25 8 1 203 364869151 364869354 2.260000e-40 176.0
2 TraesCS3A01G273400 chr3A 93.162 117 8 0 404 520 642755869 642755753 2.920000e-39 172.0
3 TraesCS3A01G273400 chr2D 88.149 1097 97 10 2 1095 106013936 106015002 0.000000e+00 1275.0
4 TraesCS3A01G273400 chr2D 89.015 264 26 2 830 1093 106002989 106003249 7.610000e-85 324.0
5 TraesCS3A01G273400 chr2D 85.556 180 24 2 2 179 596514911 596515090 1.040000e-43 187.0
6 TraesCS3A01G273400 chr2D 82.143 196 35 0 1961 2156 209515803 209515998 3.770000e-38 169.0
7 TraesCS3A01G273400 chr4A 88.557 804 78 8 84 875 296168138 296167337 0.000000e+00 963.0
8 TraesCS3A01G273400 chr4A 86.517 890 91 16 1 873 296147599 296146722 0.000000e+00 952.0
9 TraesCS3A01G273400 chr4A 88.271 665 72 6 1 662 518342612 518343273 0.000000e+00 791.0
10 TraesCS3A01G273400 chr4A 88.854 646 56 11 1263 1905 380001331 380000699 0.000000e+00 780.0
11 TraesCS3A01G273400 chr4A 88.235 646 61 9 1263 1905 380058565 380057932 0.000000e+00 758.0
12 TraesCS3A01G273400 chr4A 86.413 368 40 5 490 848 247377420 247377054 5.720000e-106 394.0
13 TraesCS3A01G273400 chr4A 83.495 412 60 7 10 416 213330901 213330493 5.760000e-101 377.0
14 TraesCS3A01G273400 chr4A 82.025 395 38 17 490 873 454788187 454787815 2.760000e-79 305.0
15 TraesCS3A01G273400 chr4A 83.188 345 42 13 544 875 247384561 247384220 3.570000e-78 302.0
16 TraesCS3A01G273400 chr4A 91.870 123 10 0 398 520 266989460 266989582 2.920000e-39 172.0
17 TraesCS3A01G273400 chr4A 84.466 103 10 4 1138 1238 128203272 128203370 1.810000e-16 97.1
18 TraesCS3A01G273400 chr1A 85.479 909 108 8 1 886 177674300 177673393 0.000000e+00 926.0
19 TraesCS3A01G273400 chr1A 87.363 728 71 6 174 880 177533759 177533032 0.000000e+00 815.0
20 TraesCS3A01G273400 chr1A 87.917 240 22 4 874 1108 139785158 139784921 2.160000e-70 276.0
21 TraesCS3A01G273400 chr1A 90.598 117 11 0 404 520 50480746 50480630 2.940000e-34 156.0
22 TraesCS3A01G273400 chr1A 90.598 117 11 0 404 520 50492537 50492421 2.940000e-34 156.0
23 TraesCS3A01G273400 chr1A 90.598 117 11 0 404 520 421528693 421528577 2.940000e-34 156.0
24 TraesCS3A01G273400 chr1A 91.071 112 10 0 404 515 346113868 346113757 3.800000e-33 152.0
25 TraesCS3A01G273400 chr1A 89.744 117 12 0 404 520 346157214 346157098 1.370000e-32 150.0
26 TraesCS3A01G273400 chr3D 89.951 607 38 6 490 1095 567524887 567525471 0.000000e+00 761.0
27 TraesCS3A01G273400 chr3D 94.805 231 12 0 198 428 567524667 567524897 5.800000e-96 361.0
28 TraesCS3A01G273400 chr3D 83.058 242 37 3 1969 2209 543884699 543884937 1.330000e-52 217.0
29 TraesCS3A01G273400 chr4D 88.870 584 55 8 1331 1911 180961988 180961412 0.000000e+00 710.0
30 TraesCS3A01G273400 chr4D 87.642 615 57 16 1299 1905 180969587 180968984 0.000000e+00 697.0
31 TraesCS3A01G273400 chr6D 87.399 619 69 9 1290 1905 177784246 177784858 0.000000e+00 702.0
32 TraesCS3A01G273400 chr6D 79.496 834 127 35 1105 1905 239408746 239407924 8.920000e-154 553.0
33 TraesCS3A01G273400 chr6D 87.938 257 31 0 831 1087 273841152 273841408 9.920000e-79 303.0
34 TraesCS3A01G273400 chr6D 80.934 257 44 2 1955 2206 53637863 53638119 4.810000e-47 198.0
35 TraesCS3A01G273400 chr7B 87.789 606 51 4 491 1095 277220710 277220127 0.000000e+00 688.0
36 TraesCS3A01G273400 chr7B 85.550 609 81 7 1301 1905 353678998 353679603 4.000000e-177 630.0
37 TraesCS3A01G273400 chr7B 85.173 607 87 3 1301 1905 353687039 353687644 8.670000e-174 619.0
38 TraesCS3A01G273400 chr7B 93.304 224 15 0 205 428 277220924 277220701 4.550000e-87 331.0
39 TraesCS3A01G273400 chr7B 85.561 187 19 6 1 180 141065232 141065047 2.900000e-44 189.0
40 TraesCS3A01G273400 chr7D 88.083 579 60 7 1331 1905 182004152 182003579 0.000000e+00 678.0
41 TraesCS3A01G273400 chr7D 86.034 179 23 2 2 179 494242826 494243003 8.050000e-45 191.0
42 TraesCS3A01G273400 chr2B 86.102 590 66 15 1322 1905 463743389 463742810 2.410000e-174 621.0
43 TraesCS3A01G273400 chr2B 92.377 223 16 1 495 716 268893143 268892921 1.270000e-82 316.0
44 TraesCS3A01G273400 chr2B 90.455 220 16 3 877 1095 739363101 739362886 3.590000e-73 285.0
45 TraesCS3A01G273400 chr2B 88.382 241 21 4 873 1108 352071482 352071244 1.290000e-72 283.0
46 TraesCS3A01G273400 chr2B 89.732 224 20 2 873 1095 552045027 552045248 1.290000e-72 283.0
47 TraesCS3A01G273400 chr2B 82.143 196 35 0 1961 2156 265223832 265224027 3.770000e-38 169.0
48 TraesCS3A01G273400 chr2A 84.500 400 47 12 487 875 159909870 159910265 4.450000e-102 381.0
49 TraesCS3A01G273400 chr2A 88.559 236 22 5 643 875 159901801 159902034 4.650000e-72 281.0
50 TraesCS3A01G273400 chr2A 81.773 203 35 1 1961 2161 262582896 262583098 3.770000e-38 169.0
51 TraesCS3A01G273400 chr2A 92.308 117 9 0 404 520 415206316 415206200 1.360000e-37 167.0
52 TraesCS3A01G273400 chr2A 91.453 117 10 0 404 520 309403474 309403358 6.310000e-36 161.0
53 TraesCS3A01G273400 chr4B 89.057 265 25 4 166 428 366333095 366333357 2.120000e-85 326.0
54 TraesCS3A01G273400 chr4B 91.781 219 16 1 877 1095 151427725 151427941 9.920000e-79 303.0
55 TraesCS3A01G273400 chrUn 89.686 223 20 2 874 1095 467145535 467145755 4.650000e-72 281.0
56 TraesCS3A01G273400 chrUn 87.917 240 22 4 874 1108 380022260 380022023 2.160000e-70 276.0
57 TraesCS3A01G273400 chr6A 87.917 240 22 4 874 1108 368087464 368087227 2.160000e-70 276.0
58 TraesCS3A01G273400 chr6A 93.162 117 8 0 404 520 378454236 378454120 2.920000e-39 172.0
59 TraesCS3A01G273400 chr5A 87.917 240 22 4 874 1108 71915603 71915366 2.160000e-70 276.0
60 TraesCS3A01G273400 chr5A 89.238 223 21 2 874 1095 194291416 194291636 2.160000e-70 276.0
61 TraesCS3A01G273400 chr3B 92.353 170 12 1 1908 2077 493126045 493125877 7.880000e-60 241.0
62 TraesCS3A01G273400 chr1B 82.677 254 35 7 1960 2206 686781791 686782042 1.330000e-52 217.0
63 TraesCS3A01G273400 chr1B 83.146 178 25 4 1985 2160 637517870 637517696 8.170000e-35 158.0
64 TraesCS3A01G273400 chr1B 88.608 79 9 0 443 521 183986221 183986143 1.810000e-16 97.1
65 TraesCS3A01G273400 chr7A 81.250 240 38 5 1976 2210 641489347 641489584 1.040000e-43 187.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G273400 chr3A 502390954 502393163 2209 True 4082.0 4082 100.0000 1 2210 1 chr3A.!!$R1 2209
1 TraesCS3A01G273400 chr2D 106013936 106015002 1066 False 1275.0 1275 88.1490 2 1095 1 chr2D.!!$F2 1093
2 TraesCS3A01G273400 chr4A 296167337 296168138 801 True 963.0 963 88.5570 84 875 1 chr4A.!!$R5 791
3 TraesCS3A01G273400 chr4A 296146722 296147599 877 True 952.0 952 86.5170 1 873 1 chr4A.!!$R4 872
4 TraesCS3A01G273400 chr4A 518342612 518343273 661 False 791.0 791 88.2710 1 662 1 chr4A.!!$F3 661
5 TraesCS3A01G273400 chr4A 380000699 380001331 632 True 780.0 780 88.8540 1263 1905 1 chr4A.!!$R6 642
6 TraesCS3A01G273400 chr4A 380057932 380058565 633 True 758.0 758 88.2350 1263 1905 1 chr4A.!!$R7 642
7 TraesCS3A01G273400 chr1A 177673393 177674300 907 True 926.0 926 85.4790 1 886 1 chr1A.!!$R5 885
8 TraesCS3A01G273400 chr1A 177533032 177533759 727 True 815.0 815 87.3630 174 880 1 chr1A.!!$R4 706
9 TraesCS3A01G273400 chr3D 567524667 567525471 804 False 561.0 761 92.3780 198 1095 2 chr3D.!!$F2 897
10 TraesCS3A01G273400 chr4D 180961412 180961988 576 True 710.0 710 88.8700 1331 1911 1 chr4D.!!$R1 580
11 TraesCS3A01G273400 chr4D 180968984 180969587 603 True 697.0 697 87.6420 1299 1905 1 chr4D.!!$R2 606
12 TraesCS3A01G273400 chr6D 177784246 177784858 612 False 702.0 702 87.3990 1290 1905 1 chr6D.!!$F2 615
13 TraesCS3A01G273400 chr6D 239407924 239408746 822 True 553.0 553 79.4960 1105 1905 1 chr6D.!!$R1 800
14 TraesCS3A01G273400 chr7B 353678998 353679603 605 False 630.0 630 85.5500 1301 1905 1 chr7B.!!$F1 604
15 TraesCS3A01G273400 chr7B 353687039 353687644 605 False 619.0 619 85.1730 1301 1905 1 chr7B.!!$F2 604
16 TraesCS3A01G273400 chr7B 277220127 277220924 797 True 509.5 688 90.5465 205 1095 2 chr7B.!!$R2 890
17 TraesCS3A01G273400 chr7D 182003579 182004152 573 True 678.0 678 88.0830 1331 1905 1 chr7D.!!$R1 574
18 TraesCS3A01G273400 chr2B 463742810 463743389 579 True 621.0 621 86.1020 1322 1905 1 chr2B.!!$R3 583

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
825 870 0.887836 CAAGTGAAGCAGAGGCAGCA 60.888 55.0 0.0 0.0 44.61 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2088 2193 0.036294 GCTCAAGAAGGCCCGTACTT 60.036 55.0 0.0 0.0 0.0 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.736995 CGAGGAGGAACGCGCAAA 60.737 61.111 5.73 0.00 0.00 3.68
40 42 3.041940 CAACTCGGACACGGTGCC 61.042 66.667 8.30 9.57 41.39 5.01
236 243 2.485814 GACGACAACGGTAGAGGTACTT 59.514 50.000 0.00 0.00 41.58 2.24
608 624 1.078708 GTCGGGCAAGGGATCGAAA 60.079 57.895 0.00 0.00 33.33 3.46
825 870 0.887836 CAAGTGAAGCAGAGGCAGCA 60.888 55.000 0.00 0.00 44.61 4.41
841 886 3.805307 CAGCGACGAGGCTCGAGT 61.805 66.667 40.35 21.71 43.74 4.18
976 1021 1.073897 GGGAAGAAGTGGCTGCAGT 59.926 57.895 16.64 0.00 0.00 4.40
1022 1067 1.221840 CGTGGAGGATGAACCAGGG 59.778 63.158 0.00 0.00 42.04 4.45
1023 1068 1.264749 CGTGGAGGATGAACCAGGGA 61.265 60.000 0.00 0.00 42.04 4.20
1080 1125 2.666190 GCAACAGCTCAGACGGCA 60.666 61.111 0.00 0.00 0.00 5.69
1103 1148 4.626081 CGGCCATGGGGATCGGAC 62.626 72.222 15.13 0.00 35.59 4.79
1107 1152 3.911698 CATGGGGATCGGACGCGA 61.912 66.667 15.93 0.00 0.00 5.87
1197 1242 1.077901 TCGGGAGGGAGATGGGGATA 61.078 60.000 0.00 0.00 0.00 2.59
1232 1277 3.242291 GTGGGGATCGGGCTAGGG 61.242 72.222 0.00 0.00 0.00 3.53
1245 1290 1.258676 GCTAGGGTTAGATAGGCGCT 58.741 55.000 7.64 0.00 0.00 5.92
1246 1291 1.067495 GCTAGGGTTAGATAGGCGCTG 60.067 57.143 7.64 0.00 0.00 5.18
1247 1292 2.515854 CTAGGGTTAGATAGGCGCTGA 58.484 52.381 7.64 0.00 0.00 4.26
1259 1306 3.142838 CGCTGATTGGGCCTTGGG 61.143 66.667 4.53 0.00 0.00 4.12
1415 1491 0.243636 CCCGGGCTCACAAAAATGAC 59.756 55.000 8.08 0.00 0.00 3.06
1461 1540 0.313672 GCATGGGCGTGAAGTTGAAA 59.686 50.000 0.00 0.00 0.00 2.69
1515 1595 3.371285 GTGAGAAAGAAGTGGGTATTCGC 59.629 47.826 0.00 0.00 0.00 4.70
1559 1642 5.888982 TTTAGGAGGAGCCTCGATAAATT 57.111 39.130 15.77 0.49 46.97 1.82
1589 1672 7.272144 AGAATTATAGACAAGGTTTGGAGGT 57.728 36.000 0.00 0.00 34.12 3.85
1610 1702 5.828328 AGGTCAAACTTGAAGTAGAAAAGGG 59.172 40.000 0.00 0.00 39.21 3.95
1613 1705 7.664318 GGTCAAACTTGAAGTAGAAAAGGGATA 59.336 37.037 0.00 0.00 39.21 2.59
1614 1706 9.232473 GTCAAACTTGAAGTAGAAAAGGGATAT 57.768 33.333 0.00 0.00 39.21 1.63
1873 1978 5.238006 ACGAAACTCGAAAAACATGGAAA 57.762 34.783 2.59 0.00 43.74 3.13
1883 1988 4.647424 AAAACATGGAAAGCGTCTGAAA 57.353 36.364 0.00 0.00 0.00 2.69
1905 2010 0.531090 TCGGTTTTGGGTCGTCACAG 60.531 55.000 0.00 0.00 0.00 3.66
1911 2016 2.125106 GGGTCGTCACAGCCATCC 60.125 66.667 0.00 0.00 33.76 3.51
1912 2017 2.662596 GGTCGTCACAGCCATCCA 59.337 61.111 0.00 0.00 0.00 3.41
1913 2018 1.221840 GGTCGTCACAGCCATCCAT 59.778 57.895 0.00 0.00 0.00 3.41
1914 2019 1.091771 GGTCGTCACAGCCATCCATG 61.092 60.000 0.00 0.00 0.00 3.66
1915 2020 1.450134 TCGTCACAGCCATCCATGC 60.450 57.895 0.00 0.00 0.00 4.06
1916 2021 2.475466 CGTCACAGCCATCCATGCC 61.475 63.158 0.00 0.00 0.00 4.40
1917 2022 2.124612 TCACAGCCATCCATGCCG 60.125 61.111 0.00 0.00 0.00 5.69
1918 2023 3.896133 CACAGCCATCCATGCCGC 61.896 66.667 0.00 0.00 0.00 6.53
1919 2024 4.429522 ACAGCCATCCATGCCGCA 62.430 61.111 0.00 0.00 0.00 5.69
1920 2025 2.910479 CAGCCATCCATGCCGCAT 60.910 61.111 0.00 0.00 0.00 4.73
1921 2026 2.123597 AGCCATCCATGCCGCATT 60.124 55.556 2.16 0.00 0.00 3.56
1922 2027 1.759299 AGCCATCCATGCCGCATTT 60.759 52.632 2.16 0.00 0.00 2.32
1923 2028 1.593209 GCCATCCATGCCGCATTTG 60.593 57.895 2.16 2.16 0.00 2.32
1924 2029 1.593209 CCATCCATGCCGCATTTGC 60.593 57.895 2.16 0.00 37.78 3.68
1925 2030 1.440060 CATCCATGCCGCATTTGCT 59.560 52.632 2.16 0.00 39.32 3.91
1926 2031 0.874175 CATCCATGCCGCATTTGCTG 60.874 55.000 2.16 0.00 39.32 4.41
1927 2032 1.324740 ATCCATGCCGCATTTGCTGT 61.325 50.000 2.16 0.00 39.32 4.40
1928 2033 1.079681 CCATGCCGCATTTGCTGTT 60.080 52.632 2.16 0.00 39.32 3.16
1929 2034 1.355796 CCATGCCGCATTTGCTGTTG 61.356 55.000 2.16 0.00 39.32 3.33
1930 2035 1.738830 ATGCCGCATTTGCTGTTGC 60.739 52.632 0.00 0.00 39.32 4.17
1941 2046 2.281761 CTGTTGCAGCCCCTCGTT 60.282 61.111 0.00 0.00 0.00 3.85
1942 2047 2.281484 TGTTGCAGCCCCTCGTTC 60.281 61.111 0.00 0.00 0.00 3.95
1943 2048 2.032681 GTTGCAGCCCCTCGTTCT 59.967 61.111 0.00 0.00 0.00 3.01
1944 2049 2.035442 GTTGCAGCCCCTCGTTCTC 61.035 63.158 0.00 0.00 0.00 2.87
1945 2050 2.217038 TTGCAGCCCCTCGTTCTCT 61.217 57.895 0.00 0.00 0.00 3.10
1946 2051 2.172483 TTGCAGCCCCTCGTTCTCTC 62.172 60.000 0.00 0.00 0.00 3.20
1947 2052 2.355193 GCAGCCCCTCGTTCTCTCT 61.355 63.158 0.00 0.00 0.00 3.10
1948 2053 1.038130 GCAGCCCCTCGTTCTCTCTA 61.038 60.000 0.00 0.00 0.00 2.43
1949 2054 1.028905 CAGCCCCTCGTTCTCTCTAG 58.971 60.000 0.00 0.00 0.00 2.43
1950 2055 0.106419 AGCCCCTCGTTCTCTCTAGG 60.106 60.000 0.00 0.00 0.00 3.02
1951 2056 1.740332 GCCCCTCGTTCTCTCTAGGC 61.740 65.000 0.00 0.00 0.00 3.93
1952 2057 0.395862 CCCCTCGTTCTCTCTAGGCA 60.396 60.000 0.00 0.00 0.00 4.75
1953 2058 1.028905 CCCTCGTTCTCTCTAGGCAG 58.971 60.000 0.00 0.00 0.00 4.85
1954 2059 1.028905 CCTCGTTCTCTCTAGGCAGG 58.971 60.000 0.00 0.00 0.00 4.85
1955 2060 1.683629 CCTCGTTCTCTCTAGGCAGGT 60.684 57.143 0.00 0.00 0.00 4.00
1956 2061 1.673920 CTCGTTCTCTCTAGGCAGGTC 59.326 57.143 0.00 0.00 0.00 3.85
1957 2062 0.378962 CGTTCTCTCTAGGCAGGTCG 59.621 60.000 0.00 0.00 0.00 4.79
1958 2063 0.741915 GTTCTCTCTAGGCAGGTCGG 59.258 60.000 0.00 0.00 0.00 4.79
1959 2064 0.331954 TTCTCTCTAGGCAGGTCGGT 59.668 55.000 0.00 0.00 0.00 4.69
1960 2065 0.107116 TCTCTCTAGGCAGGTCGGTC 60.107 60.000 0.00 0.00 0.00 4.79
1961 2066 0.106918 CTCTCTAGGCAGGTCGGTCT 60.107 60.000 0.00 0.00 0.00 3.85
1962 2067 0.107116 TCTCTAGGCAGGTCGGTCTC 60.107 60.000 0.00 0.00 0.00 3.36
1963 2068 1.076923 TCTAGGCAGGTCGGTCTCC 60.077 63.158 0.00 0.00 0.00 3.71
1964 2069 1.076632 CTAGGCAGGTCGGTCTCCT 60.077 63.158 0.00 0.00 35.45 3.69
1965 2070 0.684805 CTAGGCAGGTCGGTCTCCTT 60.685 60.000 0.00 0.00 32.37 3.36
1966 2071 0.683504 TAGGCAGGTCGGTCTCCTTC 60.684 60.000 0.00 0.00 32.37 3.46
1967 2072 1.985116 GGCAGGTCGGTCTCCTTCT 60.985 63.158 0.00 0.00 32.37 2.85
1968 2073 1.545706 GGCAGGTCGGTCTCCTTCTT 61.546 60.000 0.00 0.00 32.37 2.52
1969 2074 0.108567 GCAGGTCGGTCTCCTTCTTC 60.109 60.000 0.00 0.00 32.37 2.87
1970 2075 0.533032 CAGGTCGGTCTCCTTCTTCC 59.467 60.000 0.00 0.00 32.37 3.46
1971 2076 0.615261 AGGTCGGTCTCCTTCTTCCC 60.615 60.000 0.00 0.00 30.18 3.97
1972 2077 1.615165 GGTCGGTCTCCTTCTTCCCC 61.615 65.000 0.00 0.00 0.00 4.81
1973 2078 0.615261 GTCGGTCTCCTTCTTCCCCT 60.615 60.000 0.00 0.00 0.00 4.79
1974 2079 0.324460 TCGGTCTCCTTCTTCCCCTC 60.324 60.000 0.00 0.00 0.00 4.30
1975 2080 0.614979 CGGTCTCCTTCTTCCCCTCA 60.615 60.000 0.00 0.00 0.00 3.86
1976 2081 1.657804 GGTCTCCTTCTTCCCCTCAA 58.342 55.000 0.00 0.00 0.00 3.02
1977 2082 1.557371 GGTCTCCTTCTTCCCCTCAAG 59.443 57.143 0.00 0.00 0.00 3.02
1978 2083 1.065782 GTCTCCTTCTTCCCCTCAAGC 60.066 57.143 0.00 0.00 0.00 4.01
1979 2084 0.254462 CTCCTTCTTCCCCTCAAGCC 59.746 60.000 0.00 0.00 0.00 4.35
1980 2085 0.475632 TCCTTCTTCCCCTCAAGCCA 60.476 55.000 0.00 0.00 0.00 4.75
1981 2086 0.322906 CCTTCTTCCCCTCAAGCCAC 60.323 60.000 0.00 0.00 0.00 5.01
1982 2087 0.322906 CTTCTTCCCCTCAAGCCACC 60.323 60.000 0.00 0.00 0.00 4.61
1983 2088 0.772124 TTCTTCCCCTCAAGCCACCT 60.772 55.000 0.00 0.00 0.00 4.00
1984 2089 0.772124 TCTTCCCCTCAAGCCACCTT 60.772 55.000 0.00 0.00 0.00 3.50
1985 2090 0.113190 CTTCCCCTCAAGCCACCTTT 59.887 55.000 0.00 0.00 0.00 3.11
1986 2091 0.560688 TTCCCCTCAAGCCACCTTTT 59.439 50.000 0.00 0.00 0.00 2.27
1987 2092 0.112412 TCCCCTCAAGCCACCTTTTC 59.888 55.000 0.00 0.00 0.00 2.29
1988 2093 0.113190 CCCCTCAAGCCACCTTTTCT 59.887 55.000 0.00 0.00 0.00 2.52
1989 2094 1.539157 CCCTCAAGCCACCTTTTCTC 58.461 55.000 0.00 0.00 0.00 2.87
1990 2095 1.074566 CCCTCAAGCCACCTTTTCTCT 59.925 52.381 0.00 0.00 0.00 3.10
1991 2096 2.489802 CCCTCAAGCCACCTTTTCTCTT 60.490 50.000 0.00 0.00 0.00 2.85
1992 2097 3.225940 CCTCAAGCCACCTTTTCTCTTT 58.774 45.455 0.00 0.00 0.00 2.52
1993 2098 3.254411 CCTCAAGCCACCTTTTCTCTTTC 59.746 47.826 0.00 0.00 0.00 2.62
1994 2099 4.140536 CTCAAGCCACCTTTTCTCTTTCT 58.859 43.478 0.00 0.00 0.00 2.52
1995 2100 4.137543 TCAAGCCACCTTTTCTCTTTCTC 58.862 43.478 0.00 0.00 0.00 2.87
1996 2101 3.864789 AGCCACCTTTTCTCTTTCTCA 57.135 42.857 0.00 0.00 0.00 3.27
1997 2102 4.379302 AGCCACCTTTTCTCTTTCTCAT 57.621 40.909 0.00 0.00 0.00 2.90
1998 2103 4.331108 AGCCACCTTTTCTCTTTCTCATC 58.669 43.478 0.00 0.00 0.00 2.92
1999 2104 3.441922 GCCACCTTTTCTCTTTCTCATCC 59.558 47.826 0.00 0.00 0.00 3.51
2000 2105 4.655963 CCACCTTTTCTCTTTCTCATCCA 58.344 43.478 0.00 0.00 0.00 3.41
2001 2106 4.699257 CCACCTTTTCTCTTTCTCATCCAG 59.301 45.833 0.00 0.00 0.00 3.86
2002 2107 4.699257 CACCTTTTCTCTTTCTCATCCAGG 59.301 45.833 0.00 0.00 0.00 4.45
2003 2108 4.599241 ACCTTTTCTCTTTCTCATCCAGGA 59.401 41.667 0.00 0.00 0.00 3.86
2004 2109 5.184711 CCTTTTCTCTTTCTCATCCAGGAG 58.815 45.833 0.00 0.00 36.21 3.69
2005 2110 4.833478 TTTCTCTTTCTCATCCAGGAGG 57.167 45.455 0.00 0.00 35.58 4.30
2006 2111 2.114616 TCTCTTTCTCATCCAGGAGGC 58.885 52.381 0.00 0.00 35.58 4.70
2007 2112 2.117865 CTCTTTCTCATCCAGGAGGCT 58.882 52.381 0.00 0.00 35.58 4.58
2008 2113 2.504996 CTCTTTCTCATCCAGGAGGCTT 59.495 50.000 0.00 0.00 35.58 4.35
2009 2114 2.238144 TCTTTCTCATCCAGGAGGCTTG 59.762 50.000 0.00 0.00 35.58 4.01
2010 2115 0.254178 TTCTCATCCAGGAGGCTTGC 59.746 55.000 0.00 0.00 35.58 4.01
2011 2116 1.523258 CTCATCCAGGAGGCTTGCG 60.523 63.158 0.00 0.00 33.74 4.85
2012 2117 2.249413 CTCATCCAGGAGGCTTGCGT 62.249 60.000 0.00 0.00 33.74 5.24
2013 2118 1.817099 CATCCAGGAGGCTTGCGTC 60.817 63.158 6.75 6.75 33.74 5.19
2014 2119 3.036429 ATCCAGGAGGCTTGCGTCC 62.036 63.158 22.27 22.27 33.74 4.79
2015 2120 3.710722 CCAGGAGGCTTGCGTCCT 61.711 66.667 25.49 25.49 44.55 3.85
2019 2124 2.347490 GAGGCTTGCGTCCTCCAA 59.653 61.111 7.30 0.00 43.32 3.53
2020 2125 2.032681 AGGCTTGCGTCCTCCAAC 59.967 61.111 0.00 0.00 0.00 3.77
2021 2126 2.281484 GGCTTGCGTCCTCCAACA 60.281 61.111 0.00 0.00 0.00 3.33
2022 2127 1.675641 GGCTTGCGTCCTCCAACAT 60.676 57.895 0.00 0.00 0.00 2.71
2023 2128 1.244019 GGCTTGCGTCCTCCAACATT 61.244 55.000 0.00 0.00 0.00 2.71
2024 2129 1.448985 GCTTGCGTCCTCCAACATTA 58.551 50.000 0.00 0.00 0.00 1.90
2025 2130 2.017049 GCTTGCGTCCTCCAACATTAT 58.983 47.619 0.00 0.00 0.00 1.28
2026 2131 2.032178 GCTTGCGTCCTCCAACATTATC 59.968 50.000 0.00 0.00 0.00 1.75
2027 2132 3.270027 CTTGCGTCCTCCAACATTATCA 58.730 45.455 0.00 0.00 0.00 2.15
2028 2133 3.558931 TGCGTCCTCCAACATTATCAT 57.441 42.857 0.00 0.00 0.00 2.45
2029 2134 3.466836 TGCGTCCTCCAACATTATCATC 58.533 45.455 0.00 0.00 0.00 2.92
2030 2135 2.476619 GCGTCCTCCAACATTATCATCG 59.523 50.000 0.00 0.00 0.00 3.84
2031 2136 3.798889 GCGTCCTCCAACATTATCATCGA 60.799 47.826 0.00 0.00 0.00 3.59
2032 2137 4.368315 CGTCCTCCAACATTATCATCGAA 58.632 43.478 0.00 0.00 0.00 3.71
2033 2138 4.991056 CGTCCTCCAACATTATCATCGAAT 59.009 41.667 0.00 0.00 0.00 3.34
2034 2139 5.119279 CGTCCTCCAACATTATCATCGAATC 59.881 44.000 0.00 0.00 0.00 2.52
2035 2140 5.409826 GTCCTCCAACATTATCATCGAATCC 59.590 44.000 0.00 0.00 0.00 3.01
2036 2141 5.307976 TCCTCCAACATTATCATCGAATCCT 59.692 40.000 0.00 0.00 0.00 3.24
2037 2142 5.641209 CCTCCAACATTATCATCGAATCCTC 59.359 44.000 0.00 0.00 0.00 3.71
2038 2143 5.551233 TCCAACATTATCATCGAATCCTCC 58.449 41.667 0.00 0.00 0.00 4.30
2039 2144 5.071653 TCCAACATTATCATCGAATCCTCCA 59.928 40.000 0.00 0.00 0.00 3.86
2040 2145 5.942236 CCAACATTATCATCGAATCCTCCAT 59.058 40.000 0.00 0.00 0.00 3.41
2041 2146 6.093219 CCAACATTATCATCGAATCCTCCATC 59.907 42.308 0.00 0.00 0.00 3.51
2042 2147 6.617782 ACATTATCATCGAATCCTCCATCT 57.382 37.500 0.00 0.00 0.00 2.90
2043 2148 6.638610 ACATTATCATCGAATCCTCCATCTC 58.361 40.000 0.00 0.00 0.00 2.75
2044 2149 6.440010 ACATTATCATCGAATCCTCCATCTCT 59.560 38.462 0.00 0.00 0.00 3.10
2045 2150 6.522625 TTATCATCGAATCCTCCATCTCTC 57.477 41.667 0.00 0.00 0.00 3.20
2046 2151 2.816672 TCATCGAATCCTCCATCTCTCG 59.183 50.000 0.00 0.00 0.00 4.04
2047 2152 2.640316 TCGAATCCTCCATCTCTCGA 57.360 50.000 0.00 0.00 33.29 4.04
2048 2153 2.499197 TCGAATCCTCCATCTCTCGAG 58.501 52.381 5.93 5.93 32.10 4.04
2049 2154 1.068610 CGAATCCTCCATCTCTCGAGC 60.069 57.143 7.81 0.00 0.00 5.03
2050 2155 1.959985 GAATCCTCCATCTCTCGAGCA 59.040 52.381 7.81 0.00 0.00 4.26
2051 2156 2.079170 ATCCTCCATCTCTCGAGCAA 57.921 50.000 7.81 0.00 0.00 3.91
2052 2157 1.397672 TCCTCCATCTCTCGAGCAAG 58.602 55.000 7.81 0.44 0.00 4.01
2053 2158 1.110442 CCTCCATCTCTCGAGCAAGT 58.890 55.000 7.81 0.00 0.00 3.16
2054 2159 1.480137 CCTCCATCTCTCGAGCAAGTT 59.520 52.381 7.81 0.00 0.00 2.66
2055 2160 2.538437 CTCCATCTCTCGAGCAAGTTG 58.462 52.381 7.81 6.40 0.00 3.16
2056 2161 1.005340 CCATCTCTCGAGCAAGTTGC 58.995 55.000 20.44 20.44 45.46 4.17
2066 2171 3.027419 GCAAGTTGCAACCTCTCCT 57.973 52.632 25.62 3.24 44.26 3.69
2067 2172 1.322442 GCAAGTTGCAACCTCTCCTT 58.678 50.000 25.62 9.71 44.26 3.36
2068 2173 1.268079 GCAAGTTGCAACCTCTCCTTC 59.732 52.381 25.62 3.55 44.26 3.46
2069 2174 2.856222 CAAGTTGCAACCTCTCCTTCT 58.144 47.619 25.62 0.84 0.00 2.85
2070 2175 2.810852 CAAGTTGCAACCTCTCCTTCTC 59.189 50.000 25.62 0.00 0.00 2.87
2071 2176 1.001406 AGTTGCAACCTCTCCTTCTCG 59.999 52.381 25.62 0.00 0.00 4.04
2072 2177 1.000955 GTTGCAACCTCTCCTTCTCGA 59.999 52.381 19.15 0.00 0.00 4.04
2073 2178 0.891373 TGCAACCTCTCCTTCTCGAG 59.109 55.000 5.93 5.93 0.00 4.04
2074 2179 0.459411 GCAACCTCTCCTTCTCGAGC 60.459 60.000 7.81 0.00 0.00 5.03
2075 2180 1.181786 CAACCTCTCCTTCTCGAGCT 58.818 55.000 7.81 0.00 0.00 4.09
2076 2181 1.134175 CAACCTCTCCTTCTCGAGCTC 59.866 57.143 7.81 2.73 0.00 4.09
2077 2182 0.623723 ACCTCTCCTTCTCGAGCTCT 59.376 55.000 12.85 0.00 0.00 4.09
2078 2183 1.841277 ACCTCTCCTTCTCGAGCTCTA 59.159 52.381 12.85 0.00 0.00 2.43
2079 2184 2.441750 ACCTCTCCTTCTCGAGCTCTAT 59.558 50.000 12.85 0.00 0.00 1.98
2080 2185 3.117663 ACCTCTCCTTCTCGAGCTCTATT 60.118 47.826 12.85 0.00 0.00 1.73
2081 2186 3.253188 CCTCTCCTTCTCGAGCTCTATTG 59.747 52.174 12.85 0.00 0.00 1.90
2082 2187 4.133820 CTCTCCTTCTCGAGCTCTATTGA 58.866 47.826 12.85 0.15 0.00 2.57
2083 2188 4.724399 TCTCCTTCTCGAGCTCTATTGAT 58.276 43.478 12.85 0.00 0.00 2.57
2084 2189 4.759693 TCTCCTTCTCGAGCTCTATTGATC 59.240 45.833 12.85 0.00 0.00 2.92
2085 2190 3.823873 TCCTTCTCGAGCTCTATTGATCC 59.176 47.826 12.85 0.00 0.00 3.36
2086 2191 3.571828 CCTTCTCGAGCTCTATTGATCCA 59.428 47.826 12.85 0.00 0.00 3.41
2087 2192 4.038522 CCTTCTCGAGCTCTATTGATCCAA 59.961 45.833 12.85 0.00 0.00 3.53
2088 2193 5.452496 CCTTCTCGAGCTCTATTGATCCAAA 60.452 44.000 12.85 0.00 0.00 3.28
2089 2194 5.598416 TCTCGAGCTCTATTGATCCAAAA 57.402 39.130 12.85 0.00 0.00 2.44
2090 2195 5.595885 TCTCGAGCTCTATTGATCCAAAAG 58.404 41.667 12.85 0.00 0.00 2.27
2091 2196 5.127845 TCTCGAGCTCTATTGATCCAAAAGT 59.872 40.000 12.85 0.00 0.00 2.66
2092 2197 6.321435 TCTCGAGCTCTATTGATCCAAAAGTA 59.679 38.462 12.85 0.00 0.00 2.24
2093 2198 6.273825 TCGAGCTCTATTGATCCAAAAGTAC 58.726 40.000 12.85 0.00 0.00 2.73
2094 2199 5.174035 CGAGCTCTATTGATCCAAAAGTACG 59.826 44.000 12.85 0.00 0.00 3.67
2095 2200 5.360591 AGCTCTATTGATCCAAAAGTACGG 58.639 41.667 0.00 0.00 0.00 4.02
2096 2201 4.511826 GCTCTATTGATCCAAAAGTACGGG 59.488 45.833 0.00 0.00 0.00 5.28
2097 2202 4.448210 TCTATTGATCCAAAAGTACGGGC 58.552 43.478 0.00 0.00 0.00 6.13
2098 2203 1.828979 TTGATCCAAAAGTACGGGCC 58.171 50.000 0.00 0.00 0.00 5.80
2099 2204 0.988832 TGATCCAAAAGTACGGGCCT 59.011 50.000 0.84 0.00 0.00 5.19
2100 2205 1.353022 TGATCCAAAAGTACGGGCCTT 59.647 47.619 0.84 0.00 0.00 4.35
2101 2206 2.014857 GATCCAAAAGTACGGGCCTTC 58.985 52.381 0.84 0.00 0.00 3.46
2102 2207 1.061546 TCCAAAAGTACGGGCCTTCT 58.938 50.000 0.84 0.00 0.00 2.85
2103 2208 1.422402 TCCAAAAGTACGGGCCTTCTT 59.578 47.619 0.84 0.16 0.00 2.52
2104 2209 1.539827 CCAAAAGTACGGGCCTTCTTG 59.460 52.381 0.84 0.00 0.00 3.02
2105 2210 2.500229 CAAAAGTACGGGCCTTCTTGA 58.500 47.619 0.84 0.00 0.00 3.02
2106 2211 2.474410 AAAGTACGGGCCTTCTTGAG 57.526 50.000 0.84 0.00 0.00 3.02
2107 2212 0.036294 AAGTACGGGCCTTCTTGAGC 60.036 55.000 0.84 0.00 0.00 4.26
2108 2213 0.905337 AGTACGGGCCTTCTTGAGCT 60.905 55.000 0.84 0.00 0.00 4.09
2109 2214 0.460459 GTACGGGCCTTCTTGAGCTC 60.460 60.000 6.82 6.82 0.00 4.09
2110 2215 1.614241 TACGGGCCTTCTTGAGCTCC 61.614 60.000 12.15 0.00 0.00 4.70
2111 2216 2.273776 GGGCCTTCTTGAGCTCCC 59.726 66.667 12.15 2.57 32.04 4.30
2112 2217 2.606587 GGGCCTTCTTGAGCTCCCA 61.607 63.158 12.15 0.00 36.91 4.37
2113 2218 1.611965 GGCCTTCTTGAGCTCCCAT 59.388 57.895 12.15 0.00 0.00 4.00
2114 2219 0.465278 GGCCTTCTTGAGCTCCCATC 60.465 60.000 12.15 0.00 0.00 3.51
2115 2220 0.545646 GCCTTCTTGAGCTCCCATCT 59.454 55.000 12.15 0.00 0.00 2.90
2116 2221 1.746516 GCCTTCTTGAGCTCCCATCTG 60.747 57.143 12.15 0.00 0.00 2.90
2117 2222 1.836166 CCTTCTTGAGCTCCCATCTGA 59.164 52.381 12.15 0.00 0.00 3.27
2118 2223 2.158928 CCTTCTTGAGCTCCCATCTGAG 60.159 54.545 12.15 0.25 35.40 3.35
2119 2224 2.244486 TCTTGAGCTCCCATCTGAGT 57.756 50.000 12.15 0.00 34.74 3.41
2120 2225 2.106566 TCTTGAGCTCCCATCTGAGTC 58.893 52.381 12.15 0.00 34.74 3.36
2121 2226 1.829849 CTTGAGCTCCCATCTGAGTCA 59.170 52.381 12.15 0.00 34.74 3.41
2122 2227 1.189752 TGAGCTCCCATCTGAGTCAC 58.810 55.000 12.15 0.00 34.74 3.67
2123 2228 1.189752 GAGCTCCCATCTGAGTCACA 58.810 55.000 0.87 0.00 34.74 3.58
2124 2229 1.761784 GAGCTCCCATCTGAGTCACAT 59.238 52.381 0.87 0.00 34.74 3.21
2125 2230 1.761784 AGCTCCCATCTGAGTCACATC 59.238 52.381 0.00 0.00 34.74 3.06
2126 2231 1.761784 GCTCCCATCTGAGTCACATCT 59.238 52.381 0.00 0.00 34.74 2.90
2127 2232 2.224018 GCTCCCATCTGAGTCACATCTC 60.224 54.545 0.00 0.00 34.74 2.75
2128 2233 3.298619 CTCCCATCTGAGTCACATCTCT 58.701 50.000 0.00 0.00 35.68 3.10
2129 2234 3.705579 CTCCCATCTGAGTCACATCTCTT 59.294 47.826 0.00 0.00 35.68 2.85
2130 2235 4.099633 TCCCATCTGAGTCACATCTCTTT 58.900 43.478 0.00 0.00 35.68 2.52
2131 2236 4.161189 TCCCATCTGAGTCACATCTCTTTC 59.839 45.833 0.00 0.00 35.68 2.62
2132 2237 4.161942 CCCATCTGAGTCACATCTCTTTCT 59.838 45.833 0.00 0.00 35.68 2.52
2133 2238 5.338219 CCCATCTGAGTCACATCTCTTTCTT 60.338 44.000 0.00 0.00 35.68 2.52
2134 2239 5.811613 CCATCTGAGTCACATCTCTTTCTTC 59.188 44.000 0.00 0.00 35.68 2.87
2135 2240 6.351202 CCATCTGAGTCACATCTCTTTCTTCT 60.351 42.308 0.00 0.00 35.68 2.85
2136 2241 6.266168 TCTGAGTCACATCTCTTTCTTCTC 57.734 41.667 0.00 0.00 35.68 2.87
2137 2242 5.184864 TCTGAGTCACATCTCTTTCTTCTCC 59.815 44.000 0.00 0.00 35.68 3.71
2138 2243 4.835056 TGAGTCACATCTCTTTCTTCTCCA 59.165 41.667 0.00 0.00 35.68 3.86
2139 2244 5.305386 TGAGTCACATCTCTTTCTTCTCCAA 59.695 40.000 0.00 0.00 35.68 3.53
2140 2245 5.546526 AGTCACATCTCTTTCTTCTCCAAC 58.453 41.667 0.00 0.00 0.00 3.77
2141 2246 5.306678 AGTCACATCTCTTTCTTCTCCAACT 59.693 40.000 0.00 0.00 0.00 3.16
2142 2247 5.637387 GTCACATCTCTTTCTTCTCCAACTC 59.363 44.000 0.00 0.00 0.00 3.01
2143 2248 5.541868 TCACATCTCTTTCTTCTCCAACTCT 59.458 40.000 0.00 0.00 0.00 3.24
2144 2249 6.721668 TCACATCTCTTTCTTCTCCAACTCTA 59.278 38.462 0.00 0.00 0.00 2.43
2145 2250 7.398618 TCACATCTCTTTCTTCTCCAACTCTAT 59.601 37.037 0.00 0.00 0.00 1.98
2146 2251 8.040132 CACATCTCTTTCTTCTCCAACTCTATT 58.960 37.037 0.00 0.00 0.00 1.73
2147 2252 8.601546 ACATCTCTTTCTTCTCCAACTCTATTT 58.398 33.333 0.00 0.00 0.00 1.40
2148 2253 9.447157 CATCTCTTTCTTCTCCAACTCTATTTT 57.553 33.333 0.00 0.00 0.00 1.82
2149 2254 9.665719 ATCTCTTTCTTCTCCAACTCTATTTTC 57.334 33.333 0.00 0.00 0.00 2.29
2150 2255 8.875168 TCTCTTTCTTCTCCAACTCTATTTTCT 58.125 33.333 0.00 0.00 0.00 2.52
2151 2256 9.150348 CTCTTTCTTCTCCAACTCTATTTTCTC 57.850 37.037 0.00 0.00 0.00 2.87
2152 2257 8.875168 TCTTTCTTCTCCAACTCTATTTTCTCT 58.125 33.333 0.00 0.00 0.00 3.10
2153 2258 9.150348 CTTTCTTCTCCAACTCTATTTTCTCTC 57.850 37.037 0.00 0.00 0.00 3.20
2154 2259 8.429237 TTCTTCTCCAACTCTATTTTCTCTCT 57.571 34.615 0.00 0.00 0.00 3.10
2155 2260 8.062065 TCTTCTCCAACTCTATTTTCTCTCTC 57.938 38.462 0.00 0.00 0.00 3.20
2156 2261 7.671819 TCTTCTCCAACTCTATTTTCTCTCTCA 59.328 37.037 0.00 0.00 0.00 3.27
2157 2262 7.782897 TCTCCAACTCTATTTTCTCTCTCAA 57.217 36.000 0.00 0.00 0.00 3.02
2158 2263 8.372877 TCTCCAACTCTATTTTCTCTCTCAAT 57.627 34.615 0.00 0.00 0.00 2.57
2159 2264 8.820831 TCTCCAACTCTATTTTCTCTCTCAATT 58.179 33.333 0.00 0.00 0.00 2.32
2160 2265 9.447157 CTCCAACTCTATTTTCTCTCTCAATTT 57.553 33.333 0.00 0.00 0.00 1.82
2161 2266 9.799106 TCCAACTCTATTTTCTCTCTCAATTTT 57.201 29.630 0.00 0.00 0.00 1.82
2172 2277 7.840342 TCTCTCTCAATTTTCAGATAGTTGC 57.160 36.000 0.00 0.00 0.00 4.17
2173 2278 7.619050 TCTCTCTCAATTTTCAGATAGTTGCT 58.381 34.615 0.00 0.00 0.00 3.91
2174 2279 7.763528 TCTCTCTCAATTTTCAGATAGTTGCTC 59.236 37.037 0.00 0.00 0.00 4.26
2175 2280 7.619050 TCTCTCAATTTTCAGATAGTTGCTCT 58.381 34.615 0.00 0.00 0.00 4.09
2176 2281 7.763528 TCTCTCAATTTTCAGATAGTTGCTCTC 59.236 37.037 0.00 0.00 0.00 3.20
2177 2282 7.389232 TCTCAATTTTCAGATAGTTGCTCTCA 58.611 34.615 0.00 0.00 0.00 3.27
2178 2283 7.879677 TCTCAATTTTCAGATAGTTGCTCTCAA 59.120 33.333 0.00 0.00 0.00 3.02
2179 2284 8.571461 TCAATTTTCAGATAGTTGCTCTCAAT 57.429 30.769 0.00 0.00 34.29 2.57
2180 2285 9.017509 TCAATTTTCAGATAGTTGCTCTCAATT 57.982 29.630 0.00 0.00 34.29 2.32
2181 2286 9.635520 CAATTTTCAGATAGTTGCTCTCAATTT 57.364 29.630 0.00 0.00 34.29 1.82
2182 2287 9.635520 AATTTTCAGATAGTTGCTCTCAATTTG 57.364 29.630 0.00 0.00 34.29 2.32
2183 2288 7.750229 TTTCAGATAGTTGCTCTCAATTTGT 57.250 32.000 0.00 0.00 34.29 2.83
2184 2289 8.846943 TTTCAGATAGTTGCTCTCAATTTGTA 57.153 30.769 0.00 0.00 34.29 2.41
2185 2290 8.846943 TTCAGATAGTTGCTCTCAATTTGTAA 57.153 30.769 0.00 0.00 34.29 2.41
2186 2291 8.256611 TCAGATAGTTGCTCTCAATTTGTAAC 57.743 34.615 0.00 0.00 34.29 2.50
2187 2292 8.097038 TCAGATAGTTGCTCTCAATTTGTAACT 58.903 33.333 0.00 0.00 39.31 2.24
2188 2293 8.725148 CAGATAGTTGCTCTCAATTTGTAACTT 58.275 33.333 0.00 0.00 37.67 2.66
2189 2294 8.725148 AGATAGTTGCTCTCAATTTGTAACTTG 58.275 33.333 0.00 0.00 37.67 3.16
2190 2295 6.699575 AGTTGCTCTCAATTTGTAACTTGT 57.300 33.333 0.00 0.00 34.02 3.16
2191 2296 7.100458 AGTTGCTCTCAATTTGTAACTTGTT 57.900 32.000 0.00 0.00 34.02 2.83
2192 2297 6.974622 AGTTGCTCTCAATTTGTAACTTGTTG 59.025 34.615 0.00 0.00 34.02 3.33
2193 2298 6.449635 TGCTCTCAATTTGTAACTTGTTGT 57.550 33.333 0.00 0.00 0.00 3.32
2194 2299 6.862209 TGCTCTCAATTTGTAACTTGTTGTT 58.138 32.000 0.00 0.00 42.31 2.83
2195 2300 6.972328 TGCTCTCAATTTGTAACTTGTTGTTC 59.028 34.615 0.00 0.00 39.89 3.18
2196 2301 6.972328 GCTCTCAATTTGTAACTTGTTGTTCA 59.028 34.615 0.00 0.00 39.89 3.18
2197 2302 7.044052 GCTCTCAATTTGTAACTTGTTGTTCAC 60.044 37.037 0.00 0.00 39.89 3.18
2198 2303 7.254852 TCTCAATTTGTAACTTGTTGTTCACC 58.745 34.615 0.00 0.00 39.89 4.02
2199 2304 6.334202 TCAATTTGTAACTTGTTGTTCACCC 58.666 36.000 0.00 0.00 39.89 4.61
2200 2305 6.153680 TCAATTTGTAACTTGTTGTTCACCCT 59.846 34.615 0.00 0.00 39.89 4.34
2201 2306 5.570234 TTTGTAACTTGTTGTTCACCCTC 57.430 39.130 0.00 0.00 39.89 4.30
2202 2307 4.497291 TGTAACTTGTTGTTCACCCTCT 57.503 40.909 0.00 0.00 39.89 3.69
2203 2308 4.448210 TGTAACTTGTTGTTCACCCTCTC 58.552 43.478 0.00 0.00 39.89 3.20
2204 2309 3.933861 AACTTGTTGTTCACCCTCTCT 57.066 42.857 0.00 0.00 32.63 3.10
2205 2310 3.477210 ACTTGTTGTTCACCCTCTCTC 57.523 47.619 0.00 0.00 0.00 3.20
2206 2311 2.771943 ACTTGTTGTTCACCCTCTCTCA 59.228 45.455 0.00 0.00 0.00 3.27
2207 2312 3.181461 ACTTGTTGTTCACCCTCTCTCAG 60.181 47.826 0.00 0.00 0.00 3.35
2208 2313 2.398588 TGTTGTTCACCCTCTCTCAGT 58.601 47.619 0.00 0.00 0.00 3.41
2209 2314 2.771943 TGTTGTTCACCCTCTCTCAGTT 59.228 45.455 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 0.232303 GTGTCCGAGTTGTCTTTGCG 59.768 55.000 0.00 0.00 0.00 4.85
20 21 1.362717 CACCGTGTCCGAGTTGTCT 59.637 57.895 0.00 0.00 35.63 3.41
40 42 5.590104 TGTTGTATGAGATGTTCGTGTTG 57.410 39.130 0.00 0.00 0.00 3.33
48 50 5.963176 TGCATGTTTGTTGTATGAGATGT 57.037 34.783 0.00 0.00 0.00 3.06
203 210 3.304928 CCGTTGTCGTCTACCACTACTTT 60.305 47.826 0.00 0.00 35.01 2.66
236 243 0.318360 CTACCGTCGCCAATATCGCA 60.318 55.000 0.00 0.00 0.00 5.10
734 779 1.251527 ACCGCTCTTCGACCTGACAT 61.252 55.000 0.00 0.00 41.67 3.06
737 782 2.687805 CGACCGCTCTTCGACCTGA 61.688 63.158 0.00 0.00 41.67 3.86
798 843 3.044305 GCTTCACTTGAGCCGCGT 61.044 61.111 4.92 0.00 0.00 6.01
808 853 1.003597 CTGCTGCCTCTGCTTCACT 60.004 57.895 0.00 0.00 38.71 3.41
825 870 3.805307 CACTCGAGCCTCGTCGCT 61.805 66.667 14.64 0.00 43.42 4.93
875 920 2.669240 GCCCGTAACTCCAGCCTT 59.331 61.111 0.00 0.00 0.00 4.35
916 961 0.747255 CTTCATCCTCGACCGGACAT 59.253 55.000 9.46 0.00 35.52 3.06
967 1012 1.297689 CAAGCTCCTACTGCAGCCA 59.702 57.895 15.27 0.20 36.17 4.75
976 1021 2.365105 CCCGACCCCAAGCTCCTA 60.365 66.667 0.00 0.00 0.00 2.94
1066 1111 2.345244 CCTTGCCGTCTGAGCTGT 59.655 61.111 0.00 0.00 0.00 4.40
1146 1191 1.603678 CCAACGCATGCAAAAGAGCTT 60.604 47.619 19.57 0.00 34.99 3.74
1153 1198 2.028778 GCCACCAACGCATGCAAA 59.971 55.556 19.57 0.00 0.00 3.68
1232 1277 2.417719 CCCAATCAGCGCCTATCTAAC 58.582 52.381 2.29 0.00 0.00 2.34
1275 1322 2.271497 CAGCCTTGCAGCCTAGCT 59.729 61.111 0.00 0.00 40.77 3.32
1296 1343 8.949421 AGGAAATAAGAGTAGAGAGAGAGAGAT 58.051 37.037 0.00 0.00 0.00 2.75
1297 1344 8.331931 AGGAAATAAGAGTAGAGAGAGAGAGA 57.668 38.462 0.00 0.00 0.00 3.10
1415 1491 8.796475 TCACTTTCTATTTTTCTTGGATCAAGG 58.204 33.333 7.67 0.00 41.33 3.61
1515 1595 9.846248 CTAAATTCTCAACATTTTTGGACCTAG 57.154 33.333 0.00 0.00 0.00 3.02
1573 1656 3.662759 TTTGACCTCCAAACCTTGTCT 57.337 42.857 0.00 0.00 39.65 3.41
1589 1672 9.231297 CATATCCCTTTTCTACTTCAAGTTTGA 57.769 33.333 0.00 0.00 34.92 2.69
1601 1690 9.199645 TGCAATTTCAATCATATCCCTTTTCTA 57.800 29.630 0.00 0.00 0.00 2.10
1610 1702 8.377681 CAACACACTTGCAATTTCAATCATATC 58.622 33.333 0.00 0.00 0.00 1.63
1613 1705 5.049954 GCAACACACTTGCAATTTCAATCAT 60.050 36.000 0.00 0.00 44.34 2.45
1614 1706 4.270566 GCAACACACTTGCAATTTCAATCA 59.729 37.500 0.00 0.00 44.34 2.57
1823 1927 9.500864 GTGTGATTTGTTTTGTTTATTGCATTT 57.499 25.926 0.00 0.00 0.00 2.32
1831 1935 5.866075 TCGTCGTGTGATTTGTTTTGTTTA 58.134 33.333 0.00 0.00 0.00 2.01
1883 1988 1.592400 GACGACCCAAAACCGACGT 60.592 57.895 0.00 0.00 36.71 4.34
1891 1996 0.605319 GATGGCTGTGACGACCCAAA 60.605 55.000 0.00 0.00 0.00 3.28
1912 2017 2.437518 TGCAACAGCAAATGCGGCAT 62.438 50.000 10.23 10.23 45.47 4.40
1913 2018 3.148031 TGCAACAGCAAATGCGGCA 62.148 52.632 4.58 4.58 45.47 5.69
1914 2019 2.356075 TGCAACAGCAAATGCGGC 60.356 55.556 5.44 6.47 45.47 6.53
1915 2020 3.850923 CTGCAACAGCAAATGCGG 58.149 55.556 3.96 3.96 45.47 5.69
1924 2029 2.281761 AACGAGGGGCTGCAACAG 60.282 61.111 0.50 0.00 34.12 3.16
1925 2030 2.281484 GAACGAGGGGCTGCAACA 60.281 61.111 0.50 0.00 0.00 3.33
1926 2031 2.032681 AGAACGAGGGGCTGCAAC 59.967 61.111 0.50 0.00 0.00 4.17
1927 2032 2.172483 GAGAGAACGAGGGGCTGCAA 62.172 60.000 0.50 0.00 0.00 4.08
1928 2033 2.604686 AGAGAACGAGGGGCTGCA 60.605 61.111 0.50 0.00 0.00 4.41
1929 2034 1.038130 TAGAGAGAACGAGGGGCTGC 61.038 60.000 0.00 0.00 0.00 5.25
1930 2035 1.028905 CTAGAGAGAACGAGGGGCTG 58.971 60.000 0.00 0.00 0.00 4.85
1931 2036 0.106419 CCTAGAGAGAACGAGGGGCT 60.106 60.000 0.00 0.00 0.00 5.19
1932 2037 1.740332 GCCTAGAGAGAACGAGGGGC 61.740 65.000 0.00 0.00 0.00 5.80
1933 2038 0.395862 TGCCTAGAGAGAACGAGGGG 60.396 60.000 0.00 0.00 0.00 4.79
1934 2039 1.028905 CTGCCTAGAGAGAACGAGGG 58.971 60.000 0.00 0.00 0.00 4.30
1935 2040 1.028905 CCTGCCTAGAGAGAACGAGG 58.971 60.000 0.00 0.00 0.00 4.63
1936 2041 1.673920 GACCTGCCTAGAGAGAACGAG 59.326 57.143 0.00 0.00 0.00 4.18
1937 2042 1.752683 GACCTGCCTAGAGAGAACGA 58.247 55.000 0.00 0.00 0.00 3.85
1938 2043 0.378962 CGACCTGCCTAGAGAGAACG 59.621 60.000 0.00 0.00 0.00 3.95
1939 2044 0.741915 CCGACCTGCCTAGAGAGAAC 59.258 60.000 0.00 0.00 0.00 3.01
1940 2045 0.331954 ACCGACCTGCCTAGAGAGAA 59.668 55.000 0.00 0.00 0.00 2.87
1941 2046 0.107116 GACCGACCTGCCTAGAGAGA 60.107 60.000 0.00 0.00 0.00 3.10
1942 2047 0.106918 AGACCGACCTGCCTAGAGAG 60.107 60.000 0.00 0.00 0.00 3.20
1943 2048 0.107116 GAGACCGACCTGCCTAGAGA 60.107 60.000 0.00 0.00 0.00 3.10
1944 2049 1.104577 GGAGACCGACCTGCCTAGAG 61.105 65.000 0.00 0.00 0.00 2.43
1945 2050 1.076923 GGAGACCGACCTGCCTAGA 60.077 63.158 0.00 0.00 0.00 2.43
1946 2051 0.684805 AAGGAGACCGACCTGCCTAG 60.685 60.000 0.00 0.00 37.85 3.02
1947 2052 0.683504 GAAGGAGACCGACCTGCCTA 60.684 60.000 0.00 0.00 37.85 3.93
1948 2053 1.985116 GAAGGAGACCGACCTGCCT 60.985 63.158 0.00 0.00 37.85 4.75
1949 2054 1.545706 AAGAAGGAGACCGACCTGCC 61.546 60.000 0.00 0.00 37.85 4.85
1950 2055 0.108567 GAAGAAGGAGACCGACCTGC 60.109 60.000 0.00 0.00 37.85 4.85
1951 2056 0.533032 GGAAGAAGGAGACCGACCTG 59.467 60.000 0.00 0.00 37.85 4.00
1952 2057 0.615261 GGGAAGAAGGAGACCGACCT 60.615 60.000 0.00 0.00 39.69 3.85
1953 2058 1.615165 GGGGAAGAAGGAGACCGACC 61.615 65.000 0.00 0.00 0.00 4.79
1954 2059 0.615261 AGGGGAAGAAGGAGACCGAC 60.615 60.000 0.00 0.00 0.00 4.79
1955 2060 0.324460 GAGGGGAAGAAGGAGACCGA 60.324 60.000 0.00 0.00 0.00 4.69
1956 2061 0.614979 TGAGGGGAAGAAGGAGACCG 60.615 60.000 0.00 0.00 0.00 4.79
1957 2062 1.557371 CTTGAGGGGAAGAAGGAGACC 59.443 57.143 0.00 0.00 0.00 3.85
1958 2063 1.065782 GCTTGAGGGGAAGAAGGAGAC 60.066 57.143 0.00 0.00 0.00 3.36
1959 2064 1.280457 GCTTGAGGGGAAGAAGGAGA 58.720 55.000 0.00 0.00 0.00 3.71
1960 2065 0.254462 GGCTTGAGGGGAAGAAGGAG 59.746 60.000 0.00 0.00 0.00 3.69
1961 2066 0.475632 TGGCTTGAGGGGAAGAAGGA 60.476 55.000 0.00 0.00 0.00 3.36
1962 2067 0.322906 GTGGCTTGAGGGGAAGAAGG 60.323 60.000 0.00 0.00 0.00 3.46
1963 2068 0.322906 GGTGGCTTGAGGGGAAGAAG 60.323 60.000 0.00 0.00 0.00 2.85
1964 2069 0.772124 AGGTGGCTTGAGGGGAAGAA 60.772 55.000 0.00 0.00 0.00 2.52
1965 2070 0.772124 AAGGTGGCTTGAGGGGAAGA 60.772 55.000 0.00 0.00 0.00 2.87
1966 2071 0.113190 AAAGGTGGCTTGAGGGGAAG 59.887 55.000 0.00 0.00 0.00 3.46
1967 2072 0.560688 AAAAGGTGGCTTGAGGGGAA 59.439 50.000 0.00 0.00 0.00 3.97
1968 2073 0.112412 GAAAAGGTGGCTTGAGGGGA 59.888 55.000 0.00 0.00 0.00 4.81
1969 2074 0.113190 AGAAAAGGTGGCTTGAGGGG 59.887 55.000 0.00 0.00 0.00 4.79
1970 2075 1.074566 AGAGAAAAGGTGGCTTGAGGG 59.925 52.381 0.00 0.00 0.00 4.30
1971 2076 2.575805 AGAGAAAAGGTGGCTTGAGG 57.424 50.000 0.00 0.00 0.00 3.86
1972 2077 4.140536 AGAAAGAGAAAAGGTGGCTTGAG 58.859 43.478 0.00 0.00 0.00 3.02
1973 2078 4.137543 GAGAAAGAGAAAAGGTGGCTTGA 58.862 43.478 0.00 0.00 0.00 3.02
1974 2079 3.885297 TGAGAAAGAGAAAAGGTGGCTTG 59.115 43.478 0.00 0.00 0.00 4.01
1975 2080 4.170468 TGAGAAAGAGAAAAGGTGGCTT 57.830 40.909 0.00 0.00 0.00 4.35
1976 2081 3.864789 TGAGAAAGAGAAAAGGTGGCT 57.135 42.857 0.00 0.00 0.00 4.75
1977 2082 3.441922 GGATGAGAAAGAGAAAAGGTGGC 59.558 47.826 0.00 0.00 0.00 5.01
1978 2083 4.655963 TGGATGAGAAAGAGAAAAGGTGG 58.344 43.478 0.00 0.00 0.00 4.61
1979 2084 4.699257 CCTGGATGAGAAAGAGAAAAGGTG 59.301 45.833 0.00 0.00 0.00 4.00
1980 2085 4.599241 TCCTGGATGAGAAAGAGAAAAGGT 59.401 41.667 0.00 0.00 0.00 3.50
1981 2086 5.171339 TCCTGGATGAGAAAGAGAAAAGG 57.829 43.478 0.00 0.00 0.00 3.11
1982 2087 5.184711 CCTCCTGGATGAGAAAGAGAAAAG 58.815 45.833 0.00 0.00 34.11 2.27
1983 2088 4.566488 GCCTCCTGGATGAGAAAGAGAAAA 60.566 45.833 2.90 0.00 34.11 2.29
1984 2089 3.054802 GCCTCCTGGATGAGAAAGAGAAA 60.055 47.826 2.90 0.00 34.11 2.52
1985 2090 2.503356 GCCTCCTGGATGAGAAAGAGAA 59.497 50.000 2.90 0.00 34.11 2.87
1986 2091 2.114616 GCCTCCTGGATGAGAAAGAGA 58.885 52.381 2.90 0.00 34.11 3.10
1987 2092 2.117865 AGCCTCCTGGATGAGAAAGAG 58.882 52.381 2.90 0.00 34.11 2.85
1988 2093 2.238144 CAAGCCTCCTGGATGAGAAAGA 59.762 50.000 2.90 0.00 34.11 2.52
1989 2094 2.641305 CAAGCCTCCTGGATGAGAAAG 58.359 52.381 2.90 0.00 34.11 2.62
1990 2095 1.340405 GCAAGCCTCCTGGATGAGAAA 60.340 52.381 2.90 0.00 34.11 2.52
1991 2096 0.254178 GCAAGCCTCCTGGATGAGAA 59.746 55.000 2.90 0.00 34.11 2.87
1992 2097 1.910722 GCAAGCCTCCTGGATGAGA 59.089 57.895 2.90 0.00 34.11 3.27
1993 2098 1.523258 CGCAAGCCTCCTGGATGAG 60.523 63.158 2.90 0.00 34.57 2.90
1994 2099 2.244117 GACGCAAGCCTCCTGGATGA 62.244 60.000 2.90 0.00 45.62 2.92
1995 2100 1.817099 GACGCAAGCCTCCTGGATG 60.817 63.158 0.00 0.00 45.62 3.51
1996 2101 2.586792 GACGCAAGCCTCCTGGAT 59.413 61.111 0.00 0.00 45.62 3.41
1997 2102 3.706373 GGACGCAAGCCTCCTGGA 61.706 66.667 0.00 0.00 45.62 3.86
1998 2103 3.710722 AGGACGCAAGCCTCCTGG 61.711 66.667 11.09 0.00 39.18 4.45
2003 2108 2.032681 GTTGGAGGACGCAAGCCT 59.967 61.111 0.00 0.00 44.67 4.58
2004 2109 1.244019 AATGTTGGAGGACGCAAGCC 61.244 55.000 0.00 0.00 45.62 4.35
2005 2110 1.448985 TAATGTTGGAGGACGCAAGC 58.551 50.000 0.00 0.00 45.62 4.01
2007 2112 3.342377 TGATAATGTTGGAGGACGCAA 57.658 42.857 0.00 0.00 0.00 4.85
2008 2113 3.466836 GATGATAATGTTGGAGGACGCA 58.533 45.455 0.00 0.00 0.00 5.24
2009 2114 2.476619 CGATGATAATGTTGGAGGACGC 59.523 50.000 0.00 0.00 0.00 5.19
2010 2115 3.977427 TCGATGATAATGTTGGAGGACG 58.023 45.455 0.00 0.00 0.00 4.79
2011 2116 5.409826 GGATTCGATGATAATGTTGGAGGAC 59.590 44.000 0.00 0.00 0.00 3.85
2012 2117 5.307976 AGGATTCGATGATAATGTTGGAGGA 59.692 40.000 0.00 0.00 0.00 3.71
2013 2118 5.555017 AGGATTCGATGATAATGTTGGAGG 58.445 41.667 0.00 0.00 0.00 4.30
2014 2119 5.641209 GGAGGATTCGATGATAATGTTGGAG 59.359 44.000 0.00 0.00 0.00 3.86
2015 2120 5.071653 TGGAGGATTCGATGATAATGTTGGA 59.928 40.000 0.00 0.00 0.00 3.53
2016 2121 5.308014 TGGAGGATTCGATGATAATGTTGG 58.692 41.667 0.00 0.00 0.00 3.77
2017 2122 6.877855 AGATGGAGGATTCGATGATAATGTTG 59.122 38.462 0.00 0.00 0.00 3.33
2018 2123 7.013823 AGATGGAGGATTCGATGATAATGTT 57.986 36.000 0.00 0.00 0.00 2.71
2019 2124 6.440010 AGAGATGGAGGATTCGATGATAATGT 59.560 38.462 0.00 0.00 0.00 2.71
2020 2125 6.876155 AGAGATGGAGGATTCGATGATAATG 58.124 40.000 0.00 0.00 0.00 1.90
2021 2126 6.183360 CGAGAGATGGAGGATTCGATGATAAT 60.183 42.308 0.00 0.00 0.00 1.28
2022 2127 5.124617 CGAGAGATGGAGGATTCGATGATAA 59.875 44.000 0.00 0.00 0.00 1.75
2023 2128 4.637977 CGAGAGATGGAGGATTCGATGATA 59.362 45.833 0.00 0.00 0.00 2.15
2024 2129 3.443329 CGAGAGATGGAGGATTCGATGAT 59.557 47.826 0.00 0.00 0.00 2.45
2025 2130 2.816672 CGAGAGATGGAGGATTCGATGA 59.183 50.000 0.00 0.00 0.00 2.92
2026 2131 2.816672 TCGAGAGATGGAGGATTCGATG 59.183 50.000 0.00 0.00 32.80 3.84
2027 2132 3.081061 CTCGAGAGATGGAGGATTCGAT 58.919 50.000 6.58 0.00 40.84 3.59
2028 2133 2.499197 CTCGAGAGATGGAGGATTCGA 58.501 52.381 6.58 0.00 40.84 3.71
2029 2134 1.068610 GCTCGAGAGATGGAGGATTCG 60.069 57.143 18.75 0.00 40.84 3.34
2030 2135 1.959985 TGCTCGAGAGATGGAGGATTC 59.040 52.381 18.75 0.00 40.84 2.52
2031 2136 2.079170 TGCTCGAGAGATGGAGGATT 57.921 50.000 18.75 0.00 40.84 3.01
2032 2137 1.962807 CTTGCTCGAGAGATGGAGGAT 59.037 52.381 18.75 0.00 40.84 3.24
2033 2138 1.341482 ACTTGCTCGAGAGATGGAGGA 60.341 52.381 18.75 0.00 40.84 3.71
2034 2139 1.110442 ACTTGCTCGAGAGATGGAGG 58.890 55.000 18.75 0.00 40.84 4.30
2035 2140 2.538437 CAACTTGCTCGAGAGATGGAG 58.462 52.381 18.75 6.14 40.84 3.86
2036 2141 1.404717 GCAACTTGCTCGAGAGATGGA 60.405 52.381 18.75 0.00 40.96 3.41
2037 2142 1.005340 GCAACTTGCTCGAGAGATGG 58.995 55.000 18.75 3.27 40.96 3.51
2038 2143 1.718396 TGCAACTTGCTCGAGAGATG 58.282 50.000 18.75 11.58 45.31 2.90
2039 2144 2.072298 GTTGCAACTTGCTCGAGAGAT 58.928 47.619 22.36 0.00 45.31 2.75
2040 2145 1.502231 GTTGCAACTTGCTCGAGAGA 58.498 50.000 22.36 1.91 45.31 3.10
2041 2146 0.514691 GGTTGCAACTTGCTCGAGAG 59.485 55.000 27.64 8.22 45.31 3.20
2042 2147 0.106708 AGGTTGCAACTTGCTCGAGA 59.893 50.000 27.64 0.00 45.31 4.04
2043 2148 0.514691 GAGGTTGCAACTTGCTCGAG 59.485 55.000 27.64 8.45 45.31 4.04
2044 2149 0.106708 AGAGGTTGCAACTTGCTCGA 59.893 50.000 27.64 0.00 45.31 4.04
2045 2150 0.514691 GAGAGGTTGCAACTTGCTCG 59.485 55.000 27.64 0.00 45.31 5.03
2046 2151 0.877743 GGAGAGGTTGCAACTTGCTC 59.122 55.000 27.64 26.09 45.31 4.26
2047 2152 0.475906 AGGAGAGGTTGCAACTTGCT 59.524 50.000 27.64 20.92 45.31 3.91
2048 2153 1.268079 GAAGGAGAGGTTGCAACTTGC 59.732 52.381 27.64 18.18 45.29 4.01
2049 2154 2.810852 GAGAAGGAGAGGTTGCAACTTG 59.189 50.000 27.64 0.00 0.00 3.16
2050 2155 2.548920 CGAGAAGGAGAGGTTGCAACTT 60.549 50.000 27.64 21.86 0.00 2.66
2051 2156 1.001406 CGAGAAGGAGAGGTTGCAACT 59.999 52.381 27.64 14.56 0.00 3.16
2052 2157 1.000955 TCGAGAAGGAGAGGTTGCAAC 59.999 52.381 21.59 21.59 0.00 4.17
2053 2158 1.273606 CTCGAGAAGGAGAGGTTGCAA 59.726 52.381 6.58 0.00 36.08 4.08
2054 2159 0.891373 CTCGAGAAGGAGAGGTTGCA 59.109 55.000 6.58 0.00 36.08 4.08
2055 2160 0.459411 GCTCGAGAAGGAGAGGTTGC 60.459 60.000 18.75 0.00 36.08 4.17
2056 2161 1.134175 GAGCTCGAGAAGGAGAGGTTG 59.866 57.143 18.75 0.00 44.12 3.77
2057 2162 1.005450 AGAGCTCGAGAAGGAGAGGTT 59.995 52.381 18.75 0.00 44.12 3.50
2058 2163 0.623723 AGAGCTCGAGAAGGAGAGGT 59.376 55.000 18.75 0.00 46.37 3.85
2059 2164 2.631160 TAGAGCTCGAGAAGGAGAGG 57.369 55.000 18.75 0.00 36.08 3.69
2060 2165 4.133820 TCAATAGAGCTCGAGAAGGAGAG 58.866 47.826 18.75 0.30 36.08 3.20
2061 2166 4.157849 TCAATAGAGCTCGAGAAGGAGA 57.842 45.455 18.75 1.42 36.08 3.71
2062 2167 4.082787 GGATCAATAGAGCTCGAGAAGGAG 60.083 50.000 18.75 0.00 37.11 3.69
2063 2168 3.823873 GGATCAATAGAGCTCGAGAAGGA 59.176 47.826 18.75 3.29 0.00 3.36
2064 2169 3.571828 TGGATCAATAGAGCTCGAGAAGG 59.428 47.826 18.75 0.00 0.00 3.46
2065 2170 4.844998 TGGATCAATAGAGCTCGAGAAG 57.155 45.455 18.75 0.00 0.00 2.85
2066 2171 5.598416 TTTGGATCAATAGAGCTCGAGAA 57.402 39.130 18.75 0.00 0.00 2.87
2067 2172 5.127845 ACTTTTGGATCAATAGAGCTCGAGA 59.872 40.000 18.75 5.52 0.00 4.04
2068 2173 5.355596 ACTTTTGGATCAATAGAGCTCGAG 58.644 41.667 8.45 8.45 0.00 4.04
2069 2174 5.344743 ACTTTTGGATCAATAGAGCTCGA 57.655 39.130 8.37 2.79 0.00 4.04
2070 2175 5.174035 CGTACTTTTGGATCAATAGAGCTCG 59.826 44.000 8.37 0.00 0.00 5.03
2071 2176 5.463724 CCGTACTTTTGGATCAATAGAGCTC 59.536 44.000 5.27 5.27 0.00 4.09
2072 2177 5.360591 CCGTACTTTTGGATCAATAGAGCT 58.639 41.667 0.00 0.00 0.00 4.09
2073 2178 4.511826 CCCGTACTTTTGGATCAATAGAGC 59.488 45.833 0.00 0.00 0.00 4.09
2074 2179 4.511826 GCCCGTACTTTTGGATCAATAGAG 59.488 45.833 0.00 0.00 0.00 2.43
2075 2180 4.448210 GCCCGTACTTTTGGATCAATAGA 58.552 43.478 0.00 0.00 0.00 1.98
2076 2181 3.564225 GGCCCGTACTTTTGGATCAATAG 59.436 47.826 0.00 0.00 0.00 1.73
2077 2182 3.201266 AGGCCCGTACTTTTGGATCAATA 59.799 43.478 0.00 0.00 0.00 1.90
2078 2183 2.025321 AGGCCCGTACTTTTGGATCAAT 60.025 45.455 0.00 0.00 0.00 2.57
2079 2184 1.353022 AGGCCCGTACTTTTGGATCAA 59.647 47.619 0.00 0.00 0.00 2.57
2080 2185 0.988832 AGGCCCGTACTTTTGGATCA 59.011 50.000 0.00 0.00 0.00 2.92
2081 2186 2.014857 GAAGGCCCGTACTTTTGGATC 58.985 52.381 0.00 0.00 0.00 3.36
2082 2187 1.633945 AGAAGGCCCGTACTTTTGGAT 59.366 47.619 0.00 0.00 0.00 3.41
2083 2188 1.061546 AGAAGGCCCGTACTTTTGGA 58.938 50.000 0.00 0.00 0.00 3.53
2084 2189 1.539827 CAAGAAGGCCCGTACTTTTGG 59.460 52.381 0.00 0.00 0.00 3.28
2085 2190 2.484264 CTCAAGAAGGCCCGTACTTTTG 59.516 50.000 0.00 0.00 0.00 2.44
2086 2191 2.779506 CTCAAGAAGGCCCGTACTTTT 58.220 47.619 0.00 0.00 0.00 2.27
2087 2192 1.610886 GCTCAAGAAGGCCCGTACTTT 60.611 52.381 0.00 0.00 0.00 2.66
2088 2193 0.036294 GCTCAAGAAGGCCCGTACTT 60.036 55.000 0.00 0.00 0.00 2.24
2089 2194 0.905337 AGCTCAAGAAGGCCCGTACT 60.905 55.000 0.00 0.00 0.00 2.73
2090 2195 0.460459 GAGCTCAAGAAGGCCCGTAC 60.460 60.000 9.40 0.00 0.00 3.67
2091 2196 1.614241 GGAGCTCAAGAAGGCCCGTA 61.614 60.000 17.19 0.00 0.00 4.02
2092 2197 2.665603 GAGCTCAAGAAGGCCCGT 59.334 61.111 9.40 0.00 0.00 5.28
2093 2198 2.124942 GGAGCTCAAGAAGGCCCG 60.125 66.667 17.19 0.00 0.00 6.13
2094 2199 1.931007 ATGGGAGCTCAAGAAGGCCC 61.931 60.000 17.19 5.94 36.11 5.80
2095 2200 0.465278 GATGGGAGCTCAAGAAGGCC 60.465 60.000 17.19 6.00 0.00 5.19
2096 2201 0.545646 AGATGGGAGCTCAAGAAGGC 59.454 55.000 17.19 0.00 0.00 4.35
2097 2202 1.836166 TCAGATGGGAGCTCAAGAAGG 59.164 52.381 17.19 0.54 0.00 3.46
2098 2203 2.500910 ACTCAGATGGGAGCTCAAGAAG 59.499 50.000 17.19 5.68 38.50 2.85
2099 2204 2.499289 GACTCAGATGGGAGCTCAAGAA 59.501 50.000 17.19 0.00 38.50 2.52
2100 2205 2.106566 GACTCAGATGGGAGCTCAAGA 58.893 52.381 17.19 0.00 38.50 3.02
2101 2206 1.829849 TGACTCAGATGGGAGCTCAAG 59.170 52.381 17.19 3.42 38.50 3.02
2102 2207 1.552337 GTGACTCAGATGGGAGCTCAA 59.448 52.381 17.19 3.06 38.50 3.02
2103 2208 1.189752 GTGACTCAGATGGGAGCTCA 58.810 55.000 17.19 0.00 38.50 4.26
2104 2209 1.189752 TGTGACTCAGATGGGAGCTC 58.810 55.000 4.71 4.71 38.50 4.09
2105 2210 1.761784 GATGTGACTCAGATGGGAGCT 59.238 52.381 0.00 0.00 38.50 4.09
2106 2211 1.761784 AGATGTGACTCAGATGGGAGC 59.238 52.381 0.00 0.00 38.50 4.70
2107 2212 3.298619 AGAGATGTGACTCAGATGGGAG 58.701 50.000 0.00 0.00 39.14 4.30
2108 2213 3.395054 AGAGATGTGACTCAGATGGGA 57.605 47.619 0.00 0.00 39.14 4.37
2109 2214 4.161942 AGAAAGAGATGTGACTCAGATGGG 59.838 45.833 0.00 0.00 39.14 4.00
2110 2215 5.341872 AGAAAGAGATGTGACTCAGATGG 57.658 43.478 0.00 0.00 39.14 3.51
2111 2216 6.632909 AGAAGAAAGAGATGTGACTCAGATG 58.367 40.000 0.00 0.00 39.14 2.90
2112 2217 6.127366 GGAGAAGAAAGAGATGTGACTCAGAT 60.127 42.308 0.00 0.00 39.14 2.90
2113 2218 5.184864 GGAGAAGAAAGAGATGTGACTCAGA 59.815 44.000 0.00 0.00 39.14 3.27
2114 2219 5.047448 TGGAGAAGAAAGAGATGTGACTCAG 60.047 44.000 0.00 0.00 39.14 3.35
2115 2220 4.835056 TGGAGAAGAAAGAGATGTGACTCA 59.165 41.667 0.00 0.00 39.14 3.41
2116 2221 5.398603 TGGAGAAGAAAGAGATGTGACTC 57.601 43.478 0.00 0.00 37.19 3.36
2117 2222 5.306678 AGTTGGAGAAGAAAGAGATGTGACT 59.693 40.000 0.00 0.00 0.00 3.41
2118 2223 5.546526 AGTTGGAGAAGAAAGAGATGTGAC 58.453 41.667 0.00 0.00 0.00 3.67
2119 2224 5.541868 AGAGTTGGAGAAGAAAGAGATGTGA 59.458 40.000 0.00 0.00 0.00 3.58
2120 2225 5.792741 AGAGTTGGAGAAGAAAGAGATGTG 58.207 41.667 0.00 0.00 0.00 3.21
2121 2226 7.732222 ATAGAGTTGGAGAAGAAAGAGATGT 57.268 36.000 0.00 0.00 0.00 3.06
2122 2227 9.447157 AAAATAGAGTTGGAGAAGAAAGAGATG 57.553 33.333 0.00 0.00 0.00 2.90
2123 2228 9.665719 GAAAATAGAGTTGGAGAAGAAAGAGAT 57.334 33.333 0.00 0.00 0.00 2.75
2124 2229 8.875168 AGAAAATAGAGTTGGAGAAGAAAGAGA 58.125 33.333 0.00 0.00 0.00 3.10
2125 2230 9.150348 GAGAAAATAGAGTTGGAGAAGAAAGAG 57.850 37.037 0.00 0.00 0.00 2.85
2126 2231 8.875168 AGAGAAAATAGAGTTGGAGAAGAAAGA 58.125 33.333 0.00 0.00 0.00 2.52
2127 2232 9.150348 GAGAGAAAATAGAGTTGGAGAAGAAAG 57.850 37.037 0.00 0.00 0.00 2.62
2128 2233 8.875168 AGAGAGAAAATAGAGTTGGAGAAGAAA 58.125 33.333 0.00 0.00 0.00 2.52
2129 2234 8.429237 AGAGAGAAAATAGAGTTGGAGAAGAA 57.571 34.615 0.00 0.00 0.00 2.52
2130 2235 7.671819 TGAGAGAGAAAATAGAGTTGGAGAAGA 59.328 37.037 0.00 0.00 0.00 2.87
2131 2236 7.835822 TGAGAGAGAAAATAGAGTTGGAGAAG 58.164 38.462 0.00 0.00 0.00 2.85
2132 2237 7.782897 TGAGAGAGAAAATAGAGTTGGAGAA 57.217 36.000 0.00 0.00 0.00 2.87
2133 2238 7.782897 TTGAGAGAGAAAATAGAGTTGGAGA 57.217 36.000 0.00 0.00 0.00 3.71
2134 2239 9.447157 AAATTGAGAGAGAAAATAGAGTTGGAG 57.553 33.333 0.00 0.00 0.00 3.86
2135 2240 9.799106 AAAATTGAGAGAGAAAATAGAGTTGGA 57.201 29.630 0.00 0.00 0.00 3.53
2146 2251 8.725148 GCAACTATCTGAAAATTGAGAGAGAAA 58.275 33.333 10.52 0.00 34.15 2.52
2147 2252 8.099537 AGCAACTATCTGAAAATTGAGAGAGAA 58.900 33.333 10.52 0.00 34.15 2.87
2148 2253 7.619050 AGCAACTATCTGAAAATTGAGAGAGA 58.381 34.615 10.52 0.00 34.15 3.10
2149 2254 7.765360 AGAGCAACTATCTGAAAATTGAGAGAG 59.235 37.037 3.25 3.25 36.13 3.20
2150 2255 7.619050 AGAGCAACTATCTGAAAATTGAGAGA 58.381 34.615 0.00 0.00 0.00 3.10
2151 2256 7.548427 TGAGAGCAACTATCTGAAAATTGAGAG 59.452 37.037 0.00 0.00 0.00 3.20
2152 2257 7.389232 TGAGAGCAACTATCTGAAAATTGAGA 58.611 34.615 0.00 0.00 0.00 3.27
2153 2258 7.606858 TGAGAGCAACTATCTGAAAATTGAG 57.393 36.000 0.00 0.00 0.00 3.02
2154 2259 7.984422 TTGAGAGCAACTATCTGAAAATTGA 57.016 32.000 0.00 0.00 0.00 2.57
2155 2260 9.635520 AAATTGAGAGCAACTATCTGAAAATTG 57.364 29.630 0.00 0.00 36.72 2.32
2156 2261 9.635520 CAAATTGAGAGCAACTATCTGAAAATT 57.364 29.630 0.00 0.00 36.72 1.82
2157 2262 8.800332 ACAAATTGAGAGCAACTATCTGAAAAT 58.200 29.630 0.00 0.00 36.72 1.82
2158 2263 8.169977 ACAAATTGAGAGCAACTATCTGAAAA 57.830 30.769 0.00 0.00 36.72 2.29
2159 2264 7.750229 ACAAATTGAGAGCAACTATCTGAAA 57.250 32.000 0.00 0.00 36.72 2.69
2160 2265 8.721478 GTTACAAATTGAGAGCAACTATCTGAA 58.279 33.333 0.00 0.00 36.72 3.02
2161 2266 8.097038 AGTTACAAATTGAGAGCAACTATCTGA 58.903 33.333 0.00 0.00 36.72 3.27
2162 2267 8.261492 AGTTACAAATTGAGAGCAACTATCTG 57.739 34.615 0.00 0.00 36.72 2.90
2163 2268 8.725148 CAAGTTACAAATTGAGAGCAACTATCT 58.275 33.333 0.00 0.00 36.17 1.98
2164 2269 8.507249 ACAAGTTACAAATTGAGAGCAACTATC 58.493 33.333 8.94 0.00 37.42 2.08
2165 2270 8.396272 ACAAGTTACAAATTGAGAGCAACTAT 57.604 30.769 8.94 0.00 37.42 2.12
2166 2271 7.801716 ACAAGTTACAAATTGAGAGCAACTA 57.198 32.000 8.94 0.00 37.42 2.24
2167 2272 6.699575 ACAAGTTACAAATTGAGAGCAACT 57.300 33.333 8.94 0.00 37.42 3.16
2168 2273 6.751888 ACAACAAGTTACAAATTGAGAGCAAC 59.248 34.615 8.94 0.00 37.42 4.17
2169 2274 6.862209 ACAACAAGTTACAAATTGAGAGCAA 58.138 32.000 8.94 0.00 37.42 3.91
2170 2275 6.449635 ACAACAAGTTACAAATTGAGAGCA 57.550 33.333 8.94 0.00 37.42 4.26
2171 2276 6.972328 TGAACAACAAGTTACAAATTGAGAGC 59.028 34.615 8.94 0.00 41.51 4.09
2172 2277 7.432252 GGTGAACAACAAGTTACAAATTGAGAG 59.568 37.037 8.94 1.75 41.51 3.20
2173 2278 7.254852 GGTGAACAACAAGTTACAAATTGAGA 58.745 34.615 8.94 0.00 41.51 3.27
2174 2279 6.475402 GGGTGAACAACAAGTTACAAATTGAG 59.525 38.462 8.94 4.13 41.51 3.02
2175 2280 6.153680 AGGGTGAACAACAAGTTACAAATTGA 59.846 34.615 8.94 0.00 41.51 2.57
2176 2281 6.337356 AGGGTGAACAACAAGTTACAAATTG 58.663 36.000 0.91 0.91 41.51 2.32
2177 2282 6.379988 AGAGGGTGAACAACAAGTTACAAATT 59.620 34.615 0.00 0.00 41.51 1.82
2178 2283 5.891551 AGAGGGTGAACAACAAGTTACAAAT 59.108 36.000 0.00 0.00 41.51 2.32
2179 2284 5.258051 AGAGGGTGAACAACAAGTTACAAA 58.742 37.500 0.00 0.00 41.51 2.83
2180 2285 4.850680 AGAGGGTGAACAACAAGTTACAA 58.149 39.130 0.00 0.00 41.51 2.41
2181 2286 4.163458 AGAGAGGGTGAACAACAAGTTACA 59.837 41.667 0.00 0.00 41.51 2.41
2182 2287 4.704965 AGAGAGGGTGAACAACAAGTTAC 58.295 43.478 0.00 0.00 41.51 2.50
2183 2288 4.407621 TGAGAGAGGGTGAACAACAAGTTA 59.592 41.667 0.00 0.00 41.51 2.24
2184 2289 3.199946 TGAGAGAGGGTGAACAACAAGTT 59.800 43.478 0.00 0.00 44.93 2.66
2185 2290 2.771943 TGAGAGAGGGTGAACAACAAGT 59.228 45.455 0.00 0.00 0.00 3.16
2186 2291 3.181461 ACTGAGAGAGGGTGAACAACAAG 60.181 47.826 0.00 0.00 0.00 3.16
2187 2292 2.771943 ACTGAGAGAGGGTGAACAACAA 59.228 45.455 0.00 0.00 0.00 2.83
2188 2293 2.398588 ACTGAGAGAGGGTGAACAACA 58.601 47.619 0.00 0.00 0.00 3.33
2189 2294 3.477210 AACTGAGAGAGGGTGAACAAC 57.523 47.619 0.00 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.