Multiple sequence alignment - TraesCS3A01G272000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G272000 chr3A 100.000 3068 0 0 960 4027 501221317 501224384 0.000000e+00 5666.0
1 TraesCS3A01G272000 chr3A 100.000 564 0 0 1 564 501220358 501220921 0.000000e+00 1042.0
2 TraesCS3A01G272000 chr3A 86.275 51 7 0 3773 3823 13005849 13005799 5.620000e-04 56.5
3 TraesCS3A01G272000 chr3D 95.949 2518 61 17 962 3453 376814270 376816772 0.000000e+00 4047.0
4 TraesCS3A01G272000 chr3D 92.523 321 12 5 254 563 376813879 376814198 2.210000e-122 449.0
5 TraesCS3A01G272000 chr3D 91.262 206 9 4 3781 3978 376816829 376817033 5.130000e-69 272.0
6 TraesCS3A01G272000 chr3D 97.403 77 2 0 163 239 376813819 376813895 9.080000e-27 132.0
7 TraesCS3A01G272000 chr3D 87.879 99 10 2 4 101 376813722 376813819 9.150000e-22 115.0
8 TraesCS3A01G272000 chr3B 94.877 2518 90 18 963 3453 491367602 491370107 0.000000e+00 3899.0
9 TraesCS3A01G272000 chr3B 88.636 572 30 14 5 564 491366964 491367512 0.000000e+00 664.0
10 TraesCS3A01G272000 chr3B 89.205 176 9 7 3781 3946 491370164 491370339 1.130000e-50 211.0
11 TraesCS3A01G272000 chr3B 82.609 207 24 8 3450 3646 384066912 384067116 5.350000e-39 172.0
12 TraesCS3A01G272000 chr3B 90.909 88 7 1 3594 3680 192940144 192940057 2.540000e-22 117.0
13 TraesCS3A01G272000 chr3B 97.674 43 1 0 3657 3699 712995694 712995652 1.550000e-09 75.0
14 TraesCS3A01G272000 chr6A 86.765 204 25 2 3452 3653 594857469 594857672 4.050000e-55 226.0
15 TraesCS3A01G272000 chr6A 93.182 44 3 0 3781 3824 4785871 4785914 9.340000e-07 65.8
16 TraesCS3A01G272000 chr5B 82.745 255 28 6 3444 3696 541090630 541090870 3.150000e-51 213.0
17 TraesCS3A01G272000 chr5B 92.683 41 3 0 3775 3815 458801927 458801967 4.350000e-05 60.2
18 TraesCS3A01G272000 chr4A 93.706 143 7 1 3452 3592 137966979 137967121 3.150000e-51 213.0
19 TraesCS3A01G272000 chr4A 93.706 143 7 1 3452 3592 137972830 137972688 3.150000e-51 213.0
20 TraesCS3A01G272000 chr2D 92.857 140 8 1 3452 3589 134301488 134301627 6.820000e-48 202.0
21 TraesCS3A01G272000 chr2D 89.362 47 3 2 3773 3817 619666370 619666416 1.560000e-04 58.4
22 TraesCS3A01G272000 chr7A 84.211 209 29 3 3450 3655 701196546 701196339 2.450000e-47 200.0
23 TraesCS3A01G272000 chr5D 91.608 143 12 0 3447 3589 150835300 150835442 8.830000e-47 198.0
24 TraesCS3A01G272000 chr5D 89.286 56 3 2 3642 3697 299406249 299406301 2.600000e-07 67.6
25 TraesCS3A01G272000 chr1A 91.608 143 10 1 3452 3592 21328557 21328415 3.180000e-46 196.0
26 TraesCS3A01G272000 chr4B 83.810 210 24 6 3451 3653 399269480 399269686 1.480000e-44 191.0
27 TraesCS3A01G272000 chr4B 89.216 102 9 1 3552 3653 146469490 146469589 4.230000e-25 126.0
28 TraesCS3A01G272000 chr7B 83.537 164 27 0 3466 3629 736300321 736300484 1.940000e-33 154.0
29 TraesCS3A01G272000 chr7B 95.652 46 2 0 3654 3699 506726768 506726813 1.550000e-09 75.0
30 TraesCS3A01G272000 chr2B 93.671 79 5 0 3578 3656 735411482 735411404 7.070000e-23 119.0
31 TraesCS3A01G272000 chr2B 96.000 50 2 0 3657 3706 232780080 232780031 9.280000e-12 82.4
32 TraesCS3A01G272000 chr2B 90.698 43 4 0 3773 3815 603660102 603660144 1.560000e-04 58.4
33 TraesCS3A01G272000 chr2A 92.593 81 5 1 3577 3656 97290545 97290465 9.150000e-22 115.0
34 TraesCS3A01G272000 chr2A 90.196 51 3 2 3775 3824 742692580 742692629 9.340000e-07 65.8
35 TraesCS3A01G272000 chr1B 88.889 90 7 1 3591 3680 15235402 15235316 1.530000e-19 108.0
36 TraesCS3A01G272000 chr1D 79.641 167 15 9 3570 3720 396198356 396198193 7.120000e-18 102.0
37 TraesCS3A01G272000 chr6B 95.745 47 1 1 3654 3699 644809000 644809046 1.550000e-09 75.0
38 TraesCS3A01G272000 chr6B 87.037 54 6 1 3773 3826 145045467 145045519 4.350000e-05 60.2
39 TraesCS3A01G272000 chr6B 88.235 51 5 1 3781 3831 673927746 673927795 4.350000e-05 60.2
40 TraesCS3A01G272000 chr4D 93.182 44 3 0 3781 3824 369259348 369259391 9.340000e-07 65.8
41 TraesCS3A01G272000 chr4D 86.207 58 6 2 3761 3817 388130133 388130077 1.210000e-05 62.1
42 TraesCS3A01G272000 chr6D 88.462 52 3 3 3781 3831 25851168 25851217 4.350000e-05 60.2
43 TraesCS3A01G272000 chrUn 87.234 47 6 0 3772 3818 326632993 326633039 2.000000e-03 54.7
44 TraesCS3A01G272000 chr5A 87.234 47 6 0 3772 3818 673184652 673184698 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G272000 chr3A 501220358 501224384 4026 False 3354.000000 5666 100.0000 1 4027 2 chr3A.!!$F1 4026
1 TraesCS3A01G272000 chr3D 376813722 376817033 3311 False 1003.000000 4047 93.0032 4 3978 5 chr3D.!!$F1 3974
2 TraesCS3A01G272000 chr3B 491366964 491370339 3375 False 1591.333333 3899 90.9060 5 3946 3 chr3B.!!$F2 3941

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
253 255 0.179059 CAACCCAACCAAACCCAAGC 60.179 55.0 0.00 0.0 0.0 4.01 F
1143 1182 0.108709 CTCTCTGTCTGTCTGCCTGC 60.109 60.0 0.00 0.0 0.0 4.85 F
1471 1510 0.249073 GCAGCGACGTCATGGACTAT 60.249 55.0 17.16 0.0 0.0 2.12 F
2804 2898 0.031178 CTGTTGTTGCTGTTCTGCCC 59.969 55.0 0.00 0.0 0.0 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1580 1624 0.895530 TTGGGTACTCGAGAGCAAGG 59.104 55.0 21.68 0.0 0.00 3.61 R
2630 2724 0.670162 GTTGCTGTGGCTGTTGATGT 59.330 50.0 0.00 0.0 39.59 3.06 R
2921 3015 0.824759 GGAGCGTCATACTCCCAACT 59.175 55.0 0.00 0.0 46.81 3.16 R
3656 3756 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.0 5.23 0.0 44.66 1.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 1.588674 AGACATAGACGCCTCTCGAG 58.411 55.000 5.93 5.93 41.67 4.04
43 44 3.276857 ACGCCTCTCGAGTCAAACTATA 58.723 45.455 13.13 0.00 41.67 1.31
45 46 4.338682 ACGCCTCTCGAGTCAAACTATAAT 59.661 41.667 13.13 0.00 41.67 1.28
47 48 5.399892 CGCCTCTCGAGTCAAACTATAATTC 59.600 44.000 13.13 0.00 41.67 2.17
50 51 6.041069 CCTCTCGAGTCAAACTATAATTCCCT 59.959 42.308 13.13 0.00 0.00 4.20
51 52 6.806751 TCTCGAGTCAAACTATAATTCCCTG 58.193 40.000 13.13 0.00 0.00 4.45
57 59 5.531287 GTCAAACTATAATTCCCTGGCGATT 59.469 40.000 0.00 0.00 0.00 3.34
67 69 1.905215 CCCTGGCGATTAGAGGATCAT 59.095 52.381 0.00 0.00 37.82 2.45
85 87 0.669077 ATCGTGATACCGACAGCTCC 59.331 55.000 0.00 0.00 40.08 4.70
108 110 1.128200 ATGCTTACTGATACCGGCCA 58.872 50.000 0.00 0.00 0.00 5.36
114 116 0.753262 ACTGATACCGGCCACATCTC 59.247 55.000 0.00 0.00 0.00 2.75
127 129 1.745087 CACATCTCCCCATCAAAACCG 59.255 52.381 0.00 0.00 0.00 4.44
132 134 0.250989 TCCCCATCAAAACCGGTGTC 60.251 55.000 8.52 0.00 0.00 3.67
133 135 0.538516 CCCCATCAAAACCGGTGTCA 60.539 55.000 8.52 0.00 0.00 3.58
137 139 2.542824 CCATCAAAACCGGTGTCACAAC 60.543 50.000 8.52 0.00 0.00 3.32
139 141 0.811915 CAAAACCGGTGTCACAACCA 59.188 50.000 8.52 0.00 40.53 3.67
140 142 1.099689 AAAACCGGTGTCACAACCAG 58.900 50.000 8.52 0.00 40.53 4.00
141 143 1.381165 AAACCGGTGTCACAACCAGC 61.381 55.000 8.52 0.00 40.53 4.85
143 145 2.587753 CGGTGTCACAACCAGCGT 60.588 61.111 5.12 0.00 45.74 5.07
144 146 2.881266 CGGTGTCACAACCAGCGTG 61.881 63.158 5.12 0.00 45.74 5.34
145 147 2.542907 GGTGTCACAACCAGCGTGG 61.543 63.158 5.12 2.92 45.02 4.94
148 150 2.124529 TCACAACCAGCGTGGCAA 60.125 55.556 0.00 0.00 42.67 4.52
149 151 1.750780 TCACAACCAGCGTGGCAAA 60.751 52.632 0.00 0.00 42.67 3.68
150 152 1.588667 CACAACCAGCGTGGCAAAC 60.589 57.895 0.00 0.00 42.67 2.93
151 153 2.027460 CAACCAGCGTGGCAAACC 59.973 61.111 0.00 0.00 42.67 3.27
152 154 3.223589 AACCAGCGTGGCAAACCC 61.224 61.111 0.00 0.00 42.67 4.11
153 155 4.514585 ACCAGCGTGGCAAACCCA 62.515 61.111 0.00 0.00 42.67 4.51
160 162 4.425099 TGGCAAACCCAATACCCG 57.575 55.556 0.00 0.00 41.82 5.28
161 163 1.461144 TGGCAAACCCAATACCCGT 59.539 52.632 0.00 0.00 41.82 5.28
179 181 2.467305 CCGTTCACGCACATTTCTTTTG 59.533 45.455 0.00 0.00 38.18 2.44
221 223 2.179517 GGAGACCTGAGCGTGACG 59.820 66.667 0.00 0.00 0.00 4.35
239 241 2.917227 CTGCACCCAACCCAACCC 60.917 66.667 0.00 0.00 0.00 4.11
240 242 3.747521 CTGCACCCAACCCAACCCA 62.748 63.158 0.00 0.00 0.00 4.51
241 243 2.444895 GCACCCAACCCAACCCAA 60.445 61.111 0.00 0.00 0.00 4.12
242 244 2.802724 GCACCCAACCCAACCCAAC 61.803 63.158 0.00 0.00 0.00 3.77
243 245 2.137528 CACCCAACCCAACCCAACC 61.138 63.158 0.00 0.00 0.00 3.77
244 246 2.283809 CCCAACCCAACCCAACCA 59.716 61.111 0.00 0.00 0.00 3.67
245 247 1.383248 CCCAACCCAACCCAACCAA 60.383 57.895 0.00 0.00 0.00 3.67
246 248 0.983378 CCCAACCCAACCCAACCAAA 60.983 55.000 0.00 0.00 0.00 3.28
247 249 0.179234 CCAACCCAACCCAACCAAAC 59.821 55.000 0.00 0.00 0.00 2.93
248 250 0.179234 CAACCCAACCCAACCAAACC 59.821 55.000 0.00 0.00 0.00 3.27
249 251 0.983905 AACCCAACCCAACCAAACCC 60.984 55.000 0.00 0.00 0.00 4.11
250 252 1.383248 CCCAACCCAACCAAACCCA 60.383 57.895 0.00 0.00 0.00 4.51
251 253 0.983378 CCCAACCCAACCAAACCCAA 60.983 55.000 0.00 0.00 0.00 4.12
252 254 0.467804 CCAACCCAACCAAACCCAAG 59.532 55.000 0.00 0.00 0.00 3.61
253 255 0.179059 CAACCCAACCAAACCCAAGC 60.179 55.000 0.00 0.00 0.00 4.01
254 256 0.326143 AACCCAACCAAACCCAAGCT 60.326 50.000 0.00 0.00 0.00 3.74
255 257 1.048160 ACCCAACCAAACCCAAGCTG 61.048 55.000 0.00 0.00 0.00 4.24
256 258 0.758685 CCCAACCAAACCCAAGCTGA 60.759 55.000 0.00 0.00 0.00 4.26
257 259 0.389025 CCAACCAAACCCAAGCTGAC 59.611 55.000 0.00 0.00 0.00 3.51
258 260 0.389025 CAACCAAACCCAAGCTGACC 59.611 55.000 0.00 0.00 0.00 4.02
259 261 0.759060 AACCAAACCCAAGCTGACCC 60.759 55.000 0.00 0.00 0.00 4.46
260 262 2.268076 CCAAACCCAAGCTGACCCG 61.268 63.158 0.00 0.00 0.00 5.28
261 263 1.228124 CAAACCCAAGCTGACCCGA 60.228 57.895 0.00 0.00 0.00 5.14
262 264 0.821711 CAAACCCAAGCTGACCCGAA 60.822 55.000 0.00 0.00 0.00 4.30
263 265 0.822121 AAACCCAAGCTGACCCGAAC 60.822 55.000 0.00 0.00 0.00 3.95
264 266 2.359975 CCCAAGCTGACCCGAACC 60.360 66.667 0.00 0.00 0.00 3.62
265 267 2.429930 CCAAGCTGACCCGAACCA 59.570 61.111 0.00 0.00 0.00 3.67
266 268 1.228124 CCAAGCTGACCCGAACCAA 60.228 57.895 0.00 0.00 0.00 3.67
267 269 1.515521 CCAAGCTGACCCGAACCAAC 61.516 60.000 0.00 0.00 0.00 3.77
268 270 1.228154 AAGCTGACCCGAACCAACC 60.228 57.895 0.00 0.00 0.00 3.77
271 298 1.302511 CTGACCCGAACCAACCAGG 60.303 63.158 0.00 0.00 45.67 4.45
340 367 1.625818 GTATCCCAATGGCGATCTCCT 59.374 52.381 2.88 0.00 0.00 3.69
341 368 0.689623 ATCCCAATGGCGATCTCCTC 59.310 55.000 2.88 0.00 0.00 3.71
342 369 1.072159 CCCAATGGCGATCTCCTCC 59.928 63.158 2.88 0.00 0.00 4.30
390 419 1.361668 CGGCCACATCCAAGTCGAAG 61.362 60.000 2.24 0.00 0.00 3.79
407 436 0.975040 AAGCAGATCTCACTCGCCCT 60.975 55.000 0.00 0.00 0.00 5.19
528 567 1.002011 GCCTCCCCTCTGTTTCACC 60.002 63.158 0.00 0.00 0.00 4.02
984 1023 1.639722 GCACCAACCCAAAACCCTAT 58.360 50.000 0.00 0.00 0.00 2.57
987 1026 1.272258 ACCAACCCAAAACCCTATCCG 60.272 52.381 0.00 0.00 0.00 4.18
1123 1162 1.351683 AGGTACGTCCTGTCTCTCTGT 59.648 52.381 0.00 0.00 46.19 3.41
1126 1165 1.816074 ACGTCCTGTCTCTCTGTCTC 58.184 55.000 0.00 0.00 0.00 3.36
1130 1169 3.009723 GTCCTGTCTCTCTGTCTCTCTG 58.990 54.545 0.00 0.00 0.00 3.35
1139 1178 2.158559 TCTGTCTCTCTGTCTGTCTGC 58.841 52.381 0.00 0.00 0.00 4.26
1143 1182 0.108709 CTCTCTGTCTGTCTGCCTGC 60.109 60.000 0.00 0.00 0.00 4.85
1230 1269 2.625823 GGGGTTGATGCGTGTGTGG 61.626 63.158 0.00 0.00 0.00 4.17
1471 1510 0.249073 GCAGCGACGTCATGGACTAT 60.249 55.000 17.16 0.00 0.00 2.12
1525 1564 3.057245 TCGACAAGAATCTCAGACAGGTG 60.057 47.826 0.00 0.00 0.00 4.00
1536 1575 3.873026 GACAGGTGCGTGCTCTGCT 62.873 63.158 12.98 4.26 32.19 4.24
1580 1624 2.273557 CAGCCAATTACTGCCAAATGC 58.726 47.619 0.00 0.00 41.77 3.56
1724 1786 0.798776 AACTACGTACGGTGGAGTCG 59.201 55.000 21.06 0.00 0.00 4.18
1760 1830 5.401550 TCGTGAGATTTGGATCATTTTTGC 58.598 37.500 0.00 0.00 34.60 3.68
1776 1846 8.133754 TCATTTTTGCTGCATTAAGAATATGC 57.866 30.769 1.84 0.00 46.63 3.14
1777 1847 7.982919 TCATTTTTGCTGCATTAAGAATATGCT 59.017 29.630 1.84 0.00 46.59 3.79
2010 2104 4.880759 TGTGCCAATTCACCAAGTTAATG 58.119 39.130 0.00 0.00 36.17 1.90
2012 2106 2.923020 GCCAATTCACCAAGTTAATGCG 59.077 45.455 0.00 0.00 0.00 4.73
2045 2139 2.027561 TGCTATGCCGAACCAAAGTAGT 60.028 45.455 0.00 0.00 0.00 2.73
2069 2163 4.399303 GGTGGTTATATTCTGCAGCAACTT 59.601 41.667 9.47 0.00 0.00 2.66
2090 2184 1.301716 GCCCGTCTCTTTGAGCACA 60.302 57.895 0.00 0.00 0.00 4.57
2165 2259 2.105006 ATCAAGTGAACTGCGCAGAT 57.895 45.000 42.03 32.33 0.00 2.90
2174 2268 1.890876 ACTGCGCAGATAACAAACCA 58.109 45.000 42.03 0.00 0.00 3.67
2217 2311 1.376424 CAGCCGCATGTCCAGAACT 60.376 57.895 0.00 0.00 0.00 3.01
2283 2377 2.553466 CCAACGGAAATGTACCCTCCAA 60.553 50.000 5.98 0.00 0.00 3.53
2393 2487 1.227823 TGTTCAGCAAGTCCCACCG 60.228 57.895 0.00 0.00 0.00 4.94
2450 2544 4.501571 GCTCAAAGTACTCCTCAAGTCACA 60.502 45.833 0.00 0.00 39.55 3.58
2630 2724 3.402110 CACGGCAGAGCATAATATCCAA 58.598 45.455 0.00 0.00 0.00 3.53
2777 2871 4.835615 ACATATAAGAATCCTGCCGAGAGT 59.164 41.667 0.00 0.00 0.00 3.24
2804 2898 0.031178 CTGTTGTTGCTGTTCTGCCC 59.969 55.000 0.00 0.00 0.00 5.36
2892 2986 5.050363 CCATATGGAAGTATGTTCGAAACGG 60.050 44.000 17.49 0.00 37.39 4.44
2921 3015 6.946583 GTGTAGTAGGGTATCCACATGATCTA 59.053 42.308 0.00 0.00 34.76 1.98
3339 3435 9.862371 ATATGACGAGTTTACATCATCTTATCC 57.138 33.333 0.00 0.00 33.84 2.59
3391 3487 9.489084 GTTTATGTAGTCTTGTCATGCCATATA 57.511 33.333 0.00 0.00 0.00 0.86
3396 3492 9.407380 TGTAGTCTTGTCATGCCATATATTTTT 57.593 29.630 0.00 0.00 0.00 1.94
3457 3557 8.700973 AGAAGAAAAGAACTGAGATATACTCCC 58.299 37.037 0.00 0.00 44.34 4.30
3458 3558 8.616799 AAGAAAAGAACTGAGATATACTCCCT 57.383 34.615 0.00 0.00 44.34 4.20
3459 3559 8.245195 AGAAAAGAACTGAGATATACTCCCTC 57.755 38.462 0.00 0.00 44.34 4.30
3460 3560 8.065007 AGAAAAGAACTGAGATATACTCCCTCT 58.935 37.037 0.00 0.00 44.34 3.69
3461 3561 7.595819 AAAGAACTGAGATATACTCCCTCTG 57.404 40.000 0.00 0.00 44.34 3.35
3462 3562 6.274322 AGAACTGAGATATACTCCCTCTGT 57.726 41.667 0.00 0.00 44.34 3.41
3463 3563 6.678547 AGAACTGAGATATACTCCCTCTGTT 58.321 40.000 11.70 11.70 45.33 3.16
3464 3564 6.969993 AACTGAGATATACTCCCTCTGTTC 57.030 41.667 0.00 0.00 41.80 3.18
3465 3565 6.019656 ACTGAGATATACTCCCTCTGTTCA 57.980 41.667 0.00 0.00 44.34 3.18
3466 3566 6.619464 ACTGAGATATACTCCCTCTGTTCAT 58.381 40.000 0.00 0.00 44.34 2.57
3467 3567 7.760607 ACTGAGATATACTCCCTCTGTTCATA 58.239 38.462 0.00 0.00 44.34 2.15
3468 3568 8.228206 ACTGAGATATACTCCCTCTGTTCATAA 58.772 37.037 0.00 0.00 44.34 1.90
3469 3569 9.083422 CTGAGATATACTCCCTCTGTTCATAAA 57.917 37.037 0.00 0.00 44.34 1.40
3470 3570 9.607333 TGAGATATACTCCCTCTGTTCATAAAT 57.393 33.333 0.00 0.00 44.34 1.40
3476 3576 7.682787 ACTCCCTCTGTTCATAAATATGTCT 57.317 36.000 0.68 0.00 35.26 3.41
3477 3577 8.095452 ACTCCCTCTGTTCATAAATATGTCTT 57.905 34.615 0.68 0.00 35.26 3.01
3478 3578 8.552296 ACTCCCTCTGTTCATAAATATGTCTTT 58.448 33.333 0.68 0.00 35.26 2.52
3479 3579 9.401058 CTCCCTCTGTTCATAAATATGTCTTTT 57.599 33.333 0.68 0.00 35.26 2.27
3480 3580 9.753674 TCCCTCTGTTCATAAATATGTCTTTTT 57.246 29.630 0.68 0.00 35.26 1.94
3541 3641 8.804688 AGACATATTTTAGAGCGTAGATTCAC 57.195 34.615 0.00 0.00 0.00 3.18
3542 3642 8.634444 AGACATATTTTAGAGCGTAGATTCACT 58.366 33.333 0.00 0.00 0.00 3.41
3543 3643 8.804688 ACATATTTTAGAGCGTAGATTCACTC 57.195 34.615 0.00 0.00 0.00 3.51
3544 3644 8.414003 ACATATTTTAGAGCGTAGATTCACTCA 58.586 33.333 0.00 0.00 0.00 3.41
3545 3645 9.416794 CATATTTTAGAGCGTAGATTCACTCAT 57.583 33.333 0.00 0.00 0.00 2.90
3546 3646 9.988815 ATATTTTAGAGCGTAGATTCACTCATT 57.011 29.630 0.00 0.00 0.00 2.57
3547 3647 8.723942 ATTTTAGAGCGTAGATTCACTCATTT 57.276 30.769 0.00 0.00 0.00 2.32
3548 3648 9.817809 ATTTTAGAGCGTAGATTCACTCATTTA 57.182 29.630 0.00 0.00 0.00 1.40
3549 3649 8.858003 TTTAGAGCGTAGATTCACTCATTTAG 57.142 34.615 0.00 0.00 0.00 1.85
3550 3650 5.285651 AGAGCGTAGATTCACTCATTTAGC 58.714 41.667 0.00 0.00 0.00 3.09
3551 3651 5.068460 AGAGCGTAGATTCACTCATTTAGCT 59.932 40.000 0.00 0.00 0.00 3.32
3552 3652 5.285651 AGCGTAGATTCACTCATTTAGCTC 58.714 41.667 0.00 0.00 0.00 4.09
3553 3653 4.446051 GCGTAGATTCACTCATTTAGCTCC 59.554 45.833 0.00 0.00 0.00 4.70
3554 3654 4.677378 CGTAGATTCACTCATTTAGCTCCG 59.323 45.833 0.00 0.00 0.00 4.63
3555 3655 4.744795 AGATTCACTCATTTAGCTCCGT 57.255 40.909 0.00 0.00 0.00 4.69
3556 3656 5.854010 AGATTCACTCATTTAGCTCCGTA 57.146 39.130 0.00 0.00 0.00 4.02
3557 3657 6.412362 AGATTCACTCATTTAGCTCCGTAT 57.588 37.500 0.00 0.00 0.00 3.06
3558 3658 6.219473 AGATTCACTCATTTAGCTCCGTATG 58.781 40.000 0.00 0.00 0.00 2.39
3559 3659 3.717707 TCACTCATTTAGCTCCGTATGC 58.282 45.455 0.00 0.00 0.00 3.14
3560 3660 3.132111 TCACTCATTTAGCTCCGTATGCA 59.868 43.478 0.00 0.00 0.00 3.96
3561 3661 3.492383 CACTCATTTAGCTCCGTATGCAG 59.508 47.826 0.00 0.00 0.00 4.41
3562 3662 3.133003 ACTCATTTAGCTCCGTATGCAGT 59.867 43.478 0.00 0.00 0.00 4.40
3563 3663 3.717707 TCATTTAGCTCCGTATGCAGTC 58.282 45.455 0.00 0.00 0.00 3.51
3564 3664 2.596904 TTTAGCTCCGTATGCAGTCC 57.403 50.000 0.00 0.00 0.00 3.85
3565 3665 0.384309 TTAGCTCCGTATGCAGTCCG 59.616 55.000 0.00 0.00 0.00 4.79
3566 3666 2.071844 TAGCTCCGTATGCAGTCCGC 62.072 60.000 0.00 0.00 42.89 5.54
3584 3684 5.818136 TCCGCATTGGAATCTCTAAAAAG 57.182 39.130 0.00 0.00 46.38 2.27
3585 3685 5.496556 TCCGCATTGGAATCTCTAAAAAGA 58.503 37.500 0.00 0.00 46.38 2.52
3586 3686 5.354234 TCCGCATTGGAATCTCTAAAAAGAC 59.646 40.000 0.00 0.00 46.38 3.01
3587 3687 5.355350 CCGCATTGGAATCTCTAAAAAGACT 59.645 40.000 0.00 0.00 42.00 3.24
3588 3688 6.127897 CCGCATTGGAATCTCTAAAAAGACTT 60.128 38.462 0.00 0.00 42.00 3.01
3589 3689 6.744537 CGCATTGGAATCTCTAAAAAGACTTG 59.255 38.462 0.00 0.00 0.00 3.16
3590 3690 7.573843 CGCATTGGAATCTCTAAAAAGACTTGT 60.574 37.037 0.00 0.00 0.00 3.16
3591 3691 8.730680 GCATTGGAATCTCTAAAAAGACTTGTA 58.269 33.333 0.00 0.00 0.00 2.41
3594 3694 9.490379 TTGGAATCTCTAAAAAGACTTGTACTC 57.510 33.333 0.00 0.00 0.00 2.59
3595 3695 8.095169 TGGAATCTCTAAAAAGACTTGTACTCC 58.905 37.037 0.00 0.00 0.00 3.85
3596 3696 7.549842 GGAATCTCTAAAAAGACTTGTACTCCC 59.450 40.741 0.00 0.00 0.00 4.30
3597 3697 7.800300 ATCTCTAAAAAGACTTGTACTCCCT 57.200 36.000 0.00 0.00 0.00 4.20
3598 3698 7.229581 TCTCTAAAAAGACTTGTACTCCCTC 57.770 40.000 0.00 0.00 0.00 4.30
3599 3699 7.011382 TCTCTAAAAAGACTTGTACTCCCTCT 58.989 38.462 0.00 0.00 0.00 3.69
3600 3700 6.994221 TCTAAAAAGACTTGTACTCCCTCTG 58.006 40.000 0.00 0.00 0.00 3.35
3601 3701 5.632034 AAAAAGACTTGTACTCCCTCTGT 57.368 39.130 0.00 0.00 0.00 3.41
3602 3702 4.875561 AAAGACTTGTACTCCCTCTGTC 57.124 45.455 0.00 0.00 0.00 3.51
3603 3703 2.810164 AGACTTGTACTCCCTCTGTCC 58.190 52.381 0.00 0.00 0.00 4.02
3604 3704 1.473278 GACTTGTACTCCCTCTGTCCG 59.527 57.143 0.00 0.00 0.00 4.79
3605 3705 1.075050 ACTTGTACTCCCTCTGTCCGA 59.925 52.381 0.00 0.00 0.00 4.55
3606 3706 2.168496 CTTGTACTCCCTCTGTCCGAA 58.832 52.381 0.00 0.00 0.00 4.30
3607 3707 2.297698 TGTACTCCCTCTGTCCGAAA 57.702 50.000 0.00 0.00 0.00 3.46
3608 3708 2.600790 TGTACTCCCTCTGTCCGAAAA 58.399 47.619 0.00 0.00 0.00 2.29
3609 3709 3.170717 TGTACTCCCTCTGTCCGAAAAT 58.829 45.455 0.00 0.00 0.00 1.82
3610 3710 4.346730 TGTACTCCCTCTGTCCGAAAATA 58.653 43.478 0.00 0.00 0.00 1.40
3611 3711 3.889520 ACTCCCTCTGTCCGAAAATAC 57.110 47.619 0.00 0.00 0.00 1.89
3612 3712 3.442076 ACTCCCTCTGTCCGAAAATACT 58.558 45.455 0.00 0.00 0.00 2.12
3613 3713 3.838903 ACTCCCTCTGTCCGAAAATACTT 59.161 43.478 0.00 0.00 0.00 2.24
3614 3714 4.184629 CTCCCTCTGTCCGAAAATACTTG 58.815 47.826 0.00 0.00 0.00 3.16
3615 3715 3.581332 TCCCTCTGTCCGAAAATACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
3616 3716 3.933332 CCCTCTGTCCGAAAATACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
3617 3717 4.562757 CCCTCTGTCCGAAAATACTTGTCA 60.563 45.833 0.00 0.00 0.00 3.58
3618 3718 5.178797 CCTCTGTCCGAAAATACTTGTCAT 58.821 41.667 0.00 0.00 0.00 3.06
3619 3719 5.292101 CCTCTGTCCGAAAATACTTGTCATC 59.708 44.000 0.00 0.00 0.00 2.92
3620 3720 5.789521 TCTGTCCGAAAATACTTGTCATCA 58.210 37.500 0.00 0.00 0.00 3.07
3621 3721 6.227522 TCTGTCCGAAAATACTTGTCATCAA 58.772 36.000 0.00 0.00 0.00 2.57
3622 3722 6.708502 TCTGTCCGAAAATACTTGTCATCAAA 59.291 34.615 0.00 0.00 32.87 2.69
3623 3723 7.227711 TCTGTCCGAAAATACTTGTCATCAAAA 59.772 33.333 0.00 0.00 32.87 2.44
3624 3724 7.881142 TGTCCGAAAATACTTGTCATCAAAAT 58.119 30.769 0.00 0.00 32.87 1.82
3625 3725 7.807433 TGTCCGAAAATACTTGTCATCAAAATG 59.193 33.333 0.00 0.00 32.87 2.32
3626 3726 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
3627 3727 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
3628 3728 7.975616 CCGAAAATACTTGTCATCAAAATGGAT 59.024 33.333 0.00 0.00 33.42 3.41
3635 3735 8.059798 ACTTGTCATCAAAATGGATAAGAAGG 57.940 34.615 0.00 0.00 33.42 3.46
3636 3736 7.123247 ACTTGTCATCAAAATGGATAAGAAGGG 59.877 37.037 0.00 0.00 33.42 3.95
3637 3737 6.730447 TGTCATCAAAATGGATAAGAAGGGA 58.270 36.000 0.00 0.00 33.42 4.20
3638 3738 7.356680 TGTCATCAAAATGGATAAGAAGGGAT 58.643 34.615 0.00 0.00 33.42 3.85
3639 3739 7.286087 TGTCATCAAAATGGATAAGAAGGGATG 59.714 37.037 0.00 0.00 33.42 3.51
3640 3740 7.286316 GTCATCAAAATGGATAAGAAGGGATGT 59.714 37.037 0.00 0.00 33.42 3.06
3641 3741 8.501904 TCATCAAAATGGATAAGAAGGGATGTA 58.498 33.333 0.00 0.00 33.42 2.29
3642 3742 9.305555 CATCAAAATGGATAAGAAGGGATGTAT 57.694 33.333 0.00 0.00 0.00 2.29
3643 3743 8.924511 TCAAAATGGATAAGAAGGGATGTATC 57.075 34.615 0.00 0.00 0.00 2.24
3644 3744 8.727149 TCAAAATGGATAAGAAGGGATGTATCT 58.273 33.333 0.00 0.00 0.00 1.98
3668 3768 9.480053 TCTATAACTAAAATTATTTCCGGACGG 57.520 33.333 1.83 3.96 0.00 4.79
3669 3769 9.480053 CTATAACTAAAATTATTTCCGGACGGA 57.520 33.333 1.83 9.76 43.52 4.69
3670 3770 6.673154 AACTAAAATTATTTCCGGACGGAG 57.327 37.500 13.64 1.01 46.06 4.63
3671 3771 5.121105 ACTAAAATTATTTCCGGACGGAGG 58.879 41.667 13.64 0.00 46.06 4.30
3672 3772 2.632987 AATTATTTCCGGACGGAGGG 57.367 50.000 13.64 0.00 46.06 4.30
3673 3773 1.797320 ATTATTTCCGGACGGAGGGA 58.203 50.000 13.64 4.95 46.06 4.20
3674 3774 1.117150 TTATTTCCGGACGGAGGGAG 58.883 55.000 13.64 0.00 46.06 4.30
3675 3775 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
3676 3776 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
3677 3777 0.032813 TTTCCGGACGGAGGGAGTAT 60.033 55.000 13.64 0.00 46.06 2.12
3678 3778 0.032813 TTCCGGACGGAGGGAGTATT 60.033 55.000 13.64 0.00 46.06 1.89
3679 3779 0.032813 TCCGGACGGAGGGAGTATTT 60.033 55.000 9.76 0.00 39.76 1.40
3680 3780 1.215173 TCCGGACGGAGGGAGTATTTA 59.785 52.381 9.76 0.00 39.76 1.40
3681 3781 1.612463 CCGGACGGAGGGAGTATTTAG 59.388 57.143 4.40 0.00 37.50 1.85
3682 3782 1.612463 CGGACGGAGGGAGTATTTAGG 59.388 57.143 0.00 0.00 0.00 2.69
3683 3783 2.750807 CGGACGGAGGGAGTATTTAGGA 60.751 54.545 0.00 0.00 0.00 2.94
3684 3784 3.303049 GGACGGAGGGAGTATTTAGGAA 58.697 50.000 0.00 0.00 0.00 3.36
3685 3785 3.069300 GGACGGAGGGAGTATTTAGGAAC 59.931 52.174 0.00 0.00 0.00 3.62
3686 3786 2.692041 ACGGAGGGAGTATTTAGGAACG 59.308 50.000 0.00 0.00 0.00 3.95
3687 3787 2.035576 CGGAGGGAGTATTTAGGAACGG 59.964 54.545 0.00 0.00 0.00 4.44
3688 3788 3.303049 GGAGGGAGTATTTAGGAACGGA 58.697 50.000 0.00 0.00 0.00 4.69
3689 3789 3.321396 GGAGGGAGTATTTAGGAACGGAG 59.679 52.174 0.00 0.00 0.00 4.63
3690 3790 3.306613 AGGGAGTATTTAGGAACGGAGG 58.693 50.000 0.00 0.00 0.00 4.30
3691 3791 2.367894 GGGAGTATTTAGGAACGGAGGG 59.632 54.545 0.00 0.00 0.00 4.30
3692 3792 3.303049 GGAGTATTTAGGAACGGAGGGA 58.697 50.000 0.00 0.00 0.00 4.20
3693 3793 3.321396 GGAGTATTTAGGAACGGAGGGAG 59.679 52.174 0.00 0.00 0.00 4.30
3751 3852 2.772515 AGCCCATAACTACTCCCTTGAC 59.227 50.000 0.00 0.00 0.00 3.18
3752 3853 2.158798 GCCCATAACTACTCCCTTGACC 60.159 54.545 0.00 0.00 0.00 4.02
3753 3854 3.385115 CCCATAACTACTCCCTTGACCT 58.615 50.000 0.00 0.00 0.00 3.85
3754 3855 4.553678 CCCATAACTACTCCCTTGACCTA 58.446 47.826 0.00 0.00 0.00 3.08
3755 3856 4.966805 CCCATAACTACTCCCTTGACCTAA 59.033 45.833 0.00 0.00 0.00 2.69
3756 3857 5.427481 CCCATAACTACTCCCTTGACCTAAA 59.573 44.000 0.00 0.00 0.00 1.85
3757 3858 6.069847 CCCATAACTACTCCCTTGACCTAAAA 60.070 42.308 0.00 0.00 0.00 1.52
3758 3859 7.048512 CCATAACTACTCCCTTGACCTAAAAG 58.951 42.308 0.00 0.00 0.00 2.27
3759 3860 5.500546 AACTACTCCCTTGACCTAAAAGG 57.499 43.478 0.00 0.00 43.33 3.11
3849 3958 4.970662 AATTGCGTTTCAGATGTAGCAT 57.029 36.364 0.00 0.00 34.44 3.79
3910 4023 1.321474 CTGCCACTGGAGAAAGCAAA 58.679 50.000 0.00 0.00 32.14 3.68
3955 4068 0.321996 GGCCGGAACTTCTCTCTTGT 59.678 55.000 5.05 0.00 0.00 3.16
3958 4071 2.492484 GCCGGAACTTCTCTCTTGTAGA 59.508 50.000 5.05 0.00 0.00 2.59
3961 4074 5.539048 CCGGAACTTCTCTCTTGTAGAAAA 58.461 41.667 0.00 0.00 32.77 2.29
3983 4096 7.755582 AAAAACTGTAGAGTGCAAAAATGTC 57.244 32.000 0.00 0.00 30.61 3.06
3984 4097 6.699575 AAACTGTAGAGTGCAAAAATGTCT 57.300 33.333 0.00 0.00 30.61 3.41
3985 4098 5.931441 ACTGTAGAGTGCAAAAATGTCTC 57.069 39.130 0.00 0.00 0.00 3.36
3986 4099 5.615289 ACTGTAGAGTGCAAAAATGTCTCT 58.385 37.500 6.09 6.09 38.69 3.10
3987 4100 5.698545 ACTGTAGAGTGCAAAAATGTCTCTC 59.301 40.000 4.21 0.00 36.90 3.20
3988 4101 5.858381 TGTAGAGTGCAAAAATGTCTCTCT 58.142 37.500 4.21 3.87 36.90 3.10
3989 4102 6.291377 TGTAGAGTGCAAAAATGTCTCTCTT 58.709 36.000 4.21 0.00 36.90 2.85
3990 4103 5.686159 AGAGTGCAAAAATGTCTCTCTTG 57.314 39.130 0.00 0.00 30.98 3.02
3991 4104 5.128919 AGAGTGCAAAAATGTCTCTCTTGT 58.871 37.500 0.00 0.00 30.98 3.16
3992 4105 6.291377 AGAGTGCAAAAATGTCTCTCTTGTA 58.709 36.000 0.00 0.00 30.98 2.41
3993 4106 6.426328 AGAGTGCAAAAATGTCTCTCTTGTAG 59.574 38.462 0.00 0.00 30.98 2.74
3994 4107 6.291377 AGTGCAAAAATGTCTCTCTTGTAGA 58.709 36.000 0.00 0.00 0.00 2.59
3995 4108 6.767902 AGTGCAAAAATGTCTCTCTTGTAGAA 59.232 34.615 0.00 0.00 32.46 2.10
3996 4109 7.283127 AGTGCAAAAATGTCTCTCTTGTAGAAA 59.717 33.333 0.00 0.00 32.46 2.52
3997 4110 7.915397 GTGCAAAAATGTCTCTCTTGTAGAAAA 59.085 33.333 0.00 0.00 32.46 2.29
3998 4111 8.465999 TGCAAAAATGTCTCTCTTGTAGAAAAA 58.534 29.630 0.00 0.00 32.46 1.94
4020 4133 7.524294 AAAACTGTAGAGTGCAAAAATGTTG 57.476 32.000 0.00 0.00 30.61 3.33
4021 4134 6.449635 AACTGTAGAGTGCAAAAATGTTGA 57.550 33.333 0.00 0.00 30.61 3.18
4022 4135 6.449635 ACTGTAGAGTGCAAAAATGTTGAA 57.550 33.333 0.00 0.00 0.00 2.69
4023 4136 6.265577 ACTGTAGAGTGCAAAAATGTTGAAC 58.734 36.000 0.00 0.00 0.00 3.18
4024 4137 6.127758 ACTGTAGAGTGCAAAAATGTTGAACA 60.128 34.615 0.00 0.00 30.28 3.18
4025 4138 6.625362 TGTAGAGTGCAAAAATGTTGAACAA 58.375 32.000 0.62 0.00 30.28 2.83
4026 4139 6.529829 TGTAGAGTGCAAAAATGTTGAACAAC 59.470 34.615 0.62 10.28 41.50 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.481472 GTCTATGTCTATGAAAAACACGCG 58.519 41.667 3.53 3.53 0.00 6.01
1 2 5.481472 CGTCTATGTCTATGAAAAACACGC 58.519 41.667 0.00 0.00 0.00 5.34
2 3 5.481472 GCGTCTATGTCTATGAAAAACACG 58.519 41.667 0.00 0.00 0.00 4.49
33 34 4.448210 TCGCCAGGGAATTATAGTTTGAC 58.552 43.478 0.00 0.00 0.00 3.18
43 44 2.408565 TCCTCTAATCGCCAGGGAATT 58.591 47.619 0.00 0.00 0.00 2.17
45 46 1.971357 GATCCTCTAATCGCCAGGGAA 59.029 52.381 0.00 0.00 0.00 3.97
47 48 1.342074 TGATCCTCTAATCGCCAGGG 58.658 55.000 0.00 0.00 0.00 4.45
50 51 2.029918 CACGATGATCCTCTAATCGCCA 60.030 50.000 11.15 0.00 45.41 5.69
51 52 2.229062 TCACGATGATCCTCTAATCGCC 59.771 50.000 11.15 0.00 45.41 5.54
57 59 4.001652 GTCGGTATCACGATGATCCTCTA 58.998 47.826 4.15 0.00 45.47 2.43
67 69 0.678684 TGGAGCTGTCGGTATCACGA 60.679 55.000 0.00 0.00 41.13 4.35
85 87 3.684788 GGCCGGTATCAGTAAGCATATTG 59.315 47.826 1.90 0.00 0.00 1.90
108 110 1.340991 CCGGTTTTGATGGGGAGATGT 60.341 52.381 0.00 0.00 0.00 3.06
114 116 0.538516 TGACACCGGTTTTGATGGGG 60.539 55.000 2.97 0.00 0.00 4.96
127 129 2.542907 CCACGCTGGTTGTGACACC 61.543 63.158 2.45 0.00 39.73 4.16
132 134 1.588667 GTTTGCCACGCTGGTTGTG 60.589 57.895 6.02 0.00 40.46 3.33
133 135 2.781158 GGTTTGCCACGCTGGTTGT 61.781 57.895 6.02 0.00 40.46 3.32
137 139 1.247419 TATTGGGTTTGCCACGCTGG 61.247 55.000 0.25 0.25 41.55 4.85
139 141 1.248101 GGTATTGGGTTTGCCACGCT 61.248 55.000 2.46 0.00 39.16 5.07
140 142 1.214325 GGTATTGGGTTTGCCACGC 59.786 57.895 0.00 0.00 38.86 5.34
141 143 1.887301 GGGTATTGGGTTTGCCACG 59.113 57.895 0.00 0.00 36.17 4.94
143 145 0.178958 AACGGGTATTGGGTTTGCCA 60.179 50.000 0.00 0.00 36.17 4.92
144 146 0.528924 GAACGGGTATTGGGTTTGCC 59.471 55.000 0.00 0.00 0.00 4.52
145 147 1.068125 GTGAACGGGTATTGGGTTTGC 60.068 52.381 0.00 0.00 0.00 3.68
148 150 0.956902 GCGTGAACGGGTATTGGGTT 60.957 55.000 4.84 0.00 40.23 4.11
149 151 1.376295 GCGTGAACGGGTATTGGGT 60.376 57.895 4.84 0.00 40.23 4.51
150 152 1.376166 TGCGTGAACGGGTATTGGG 60.376 57.895 4.84 0.00 40.23 4.12
151 153 0.951525 TGTGCGTGAACGGGTATTGG 60.952 55.000 4.84 0.00 40.23 3.16
152 154 1.083489 ATGTGCGTGAACGGGTATTG 58.917 50.000 4.84 0.00 40.23 1.90
153 155 1.816074 AATGTGCGTGAACGGGTATT 58.184 45.000 4.84 0.00 40.23 1.89
154 156 1.735571 GAAATGTGCGTGAACGGGTAT 59.264 47.619 4.84 0.00 40.23 2.73
155 157 1.149987 GAAATGTGCGTGAACGGGTA 58.850 50.000 4.84 0.00 40.23 3.69
156 158 0.534203 AGAAATGTGCGTGAACGGGT 60.534 50.000 4.84 0.00 40.23 5.28
157 159 0.591170 AAGAAATGTGCGTGAACGGG 59.409 50.000 4.84 0.00 40.23 5.28
158 160 2.399396 AAAGAAATGTGCGTGAACGG 57.601 45.000 4.84 0.00 40.23 4.44
159 161 3.358775 TCAAAAGAAATGTGCGTGAACG 58.641 40.909 0.00 0.00 43.27 3.95
160 162 5.458452 TGATTCAAAAGAAATGTGCGTGAAC 59.542 36.000 0.00 0.00 0.00 3.18
161 163 5.458452 GTGATTCAAAAGAAATGTGCGTGAA 59.542 36.000 0.00 0.00 0.00 3.18
179 181 1.059692 CGTGAGTCATGTGCGTGATTC 59.940 52.381 4.02 9.16 35.94 2.52
221 223 3.615709 GGTTGGGTTGGGTGCAGC 61.616 66.667 7.55 7.55 0.00 5.25
239 241 0.389025 GGTCAGCTTGGGTTTGGTTG 59.611 55.000 0.00 0.00 0.00 3.77
240 242 0.759060 GGGTCAGCTTGGGTTTGGTT 60.759 55.000 0.00 0.00 0.00 3.67
241 243 1.152546 GGGTCAGCTTGGGTTTGGT 60.153 57.895 0.00 0.00 0.00 3.67
242 244 2.268076 CGGGTCAGCTTGGGTTTGG 61.268 63.158 0.00 0.00 0.00 3.28
243 245 0.821711 TTCGGGTCAGCTTGGGTTTG 60.822 55.000 0.00 0.00 0.00 2.93
244 246 0.822121 GTTCGGGTCAGCTTGGGTTT 60.822 55.000 0.00 0.00 0.00 3.27
245 247 1.228154 GTTCGGGTCAGCTTGGGTT 60.228 57.895 0.00 0.00 0.00 4.11
246 248 2.430367 GTTCGGGTCAGCTTGGGT 59.570 61.111 0.00 0.00 0.00 4.51
247 249 2.359975 GGTTCGGGTCAGCTTGGG 60.360 66.667 0.00 0.00 0.00 4.12
248 250 1.228124 TTGGTTCGGGTCAGCTTGG 60.228 57.895 0.00 0.00 0.00 3.61
249 251 1.515521 GGTTGGTTCGGGTCAGCTTG 61.516 60.000 0.00 0.00 0.00 4.01
250 252 1.228154 GGTTGGTTCGGGTCAGCTT 60.228 57.895 0.00 0.00 0.00 3.74
251 253 2.397413 CTGGTTGGTTCGGGTCAGCT 62.397 60.000 0.00 0.00 0.00 4.24
252 254 1.966451 CTGGTTGGTTCGGGTCAGC 60.966 63.158 0.00 0.00 0.00 4.26
253 255 1.302511 CCTGGTTGGTTCGGGTCAG 60.303 63.158 0.00 0.00 0.00 3.51
254 256 2.833227 CCTGGTTGGTTCGGGTCA 59.167 61.111 0.00 0.00 0.00 4.02
255 257 2.671963 GCCTGGTTGGTTCGGGTC 60.672 66.667 0.00 0.00 38.35 4.46
256 258 4.280019 GGCCTGGTTGGTTCGGGT 62.280 66.667 0.00 0.00 38.35 5.28
258 260 3.920093 GAGGGCCTGGTTGGTTCGG 62.920 68.421 12.95 0.00 38.35 4.30
259 261 2.359975 GAGGGCCTGGTTGGTTCG 60.360 66.667 12.95 0.00 38.35 3.95
260 262 1.002011 GAGAGGGCCTGGTTGGTTC 60.002 63.158 12.95 0.00 38.35 3.62
261 263 2.539081 GGAGAGGGCCTGGTTGGTT 61.539 63.158 12.95 0.00 38.35 3.67
262 264 2.936032 GGAGAGGGCCTGGTTGGT 60.936 66.667 12.95 0.00 38.35 3.67
263 265 3.732849 GGGAGAGGGCCTGGTTGG 61.733 72.222 12.95 0.00 39.35 3.77
264 266 4.101448 CGGGAGAGGGCCTGGTTG 62.101 72.222 12.95 0.00 0.00 3.77
265 267 4.658786 ACGGGAGAGGGCCTGGTT 62.659 66.667 12.95 0.00 38.69 3.67
267 269 4.787280 AGACGGGAGAGGGCCTGG 62.787 72.222 12.95 0.00 38.69 4.45
268 270 2.685380 AAGACGGGAGAGGGCCTG 60.685 66.667 12.95 0.00 40.29 4.85
271 298 1.045911 AGATCAAGACGGGAGAGGGC 61.046 60.000 0.00 0.00 0.00 5.19
274 301 3.876274 TTTCAGATCAAGACGGGAGAG 57.124 47.619 0.00 0.00 0.00 3.20
342 369 1.003839 TTTACTGACGCCCAGCAGG 60.004 57.895 5.44 0.00 46.81 4.85
390 419 1.227205 CAGGGCGAGTGAGATCTGC 60.227 63.158 0.00 0.00 0.00 4.26
407 436 3.948719 GGGCGTGGGTGGACTTCA 61.949 66.667 0.00 0.00 0.00 3.02
528 567 1.673477 GGGCAAAGGGAAAAGCAGG 59.327 57.895 0.00 0.00 0.00 4.85
1115 1154 3.582647 AGACAGACAGAGAGACAGAGAGA 59.417 47.826 0.00 0.00 0.00 3.10
1116 1155 3.686241 CAGACAGACAGAGAGACAGAGAG 59.314 52.174 0.00 0.00 0.00 3.20
1117 1156 3.673902 CAGACAGACAGAGAGACAGAGA 58.326 50.000 0.00 0.00 0.00 3.10
1123 1162 1.543607 CAGGCAGACAGACAGAGAGA 58.456 55.000 0.00 0.00 0.00 3.10
1126 1165 1.079266 GGCAGGCAGACAGACAGAG 60.079 63.158 0.00 0.00 0.00 3.35
1139 1178 4.247380 GAGATGGAGGCCGGCAGG 62.247 72.222 30.85 0.00 41.62 4.85
1143 1182 2.201490 TAGGGAGATGGAGGCCGG 59.799 66.667 0.00 0.00 0.00 6.13
1199 1238 3.205851 AACCCCCGCCTCAGAAACC 62.206 63.158 0.00 0.00 0.00 3.27
1230 1269 2.043953 AATCCTGCTTTCCCCGCC 60.044 61.111 0.00 0.00 0.00 6.13
1580 1624 0.895530 TTGGGTACTCGAGAGCAAGG 59.104 55.000 21.68 0.00 0.00 3.61
1724 1786 4.705337 ATCTCACGAGAACAGTAAGTCC 57.295 45.455 0.00 0.00 41.36 3.85
1776 1846 4.450419 AGAAACGATTGTTCAGCTCAGAAG 59.550 41.667 0.00 0.00 37.31 2.85
1777 1847 4.380531 AGAAACGATTGTTCAGCTCAGAA 58.619 39.130 0.00 0.00 37.31 3.02
2045 2139 3.643199 TGCTGCAGAATATAACCACCA 57.357 42.857 20.43 0.00 0.00 4.17
2069 2163 1.301716 GCTCAAAGAGACGGGCACA 60.302 57.895 0.00 0.00 0.00 4.57
2090 2184 2.421073 CGGATGTTGCTGATCATGTTGT 59.579 45.455 0.00 0.00 0.00 3.32
2165 2259 5.127491 ACAAAAGACTCGGATGGTTTGTTA 58.873 37.500 0.00 0.00 36.13 2.41
2174 2268 3.771577 ACCTGAACAAAAGACTCGGAT 57.228 42.857 0.00 0.00 0.00 4.18
2217 2311 1.073722 CTGCAACCCTGGCTTCAGA 59.926 57.895 0.00 0.00 40.86 3.27
2393 2487 4.305989 TGTTTTCTGTTGAACCATCTGC 57.694 40.909 0.00 0.00 31.02 4.26
2450 2544 7.782168 TGAGAAGAGTATTGAGGATACATGAGT 59.218 37.037 0.00 0.00 42.57 3.41
2630 2724 0.670162 GTTGCTGTGGCTGTTGATGT 59.330 50.000 0.00 0.00 39.59 3.06
2804 2898 2.180017 GCTGTTGCCGAATGCTGG 59.820 61.111 0.00 0.00 42.00 4.85
2892 2986 2.364647 GTGGATACCCTACTACACTGGC 59.635 54.545 0.00 0.00 0.00 4.85
2921 3015 0.824759 GGAGCGTCATACTCCCAACT 59.175 55.000 0.00 0.00 46.81 3.16
3339 3435 5.961263 GTGGTAAACCGATATTTAAACAGCG 59.039 40.000 0.00 0.00 39.43 5.18
3396 3492 6.831976 ACATGCTACAAAACCCCAAATAAAA 58.168 32.000 0.00 0.00 0.00 1.52
3407 3507 9.635520 TCTTTACTACTCTACATGCTACAAAAC 57.364 33.333 0.00 0.00 0.00 2.43
3442 3542 6.019656 TGAACAGAGGGAGTATATCTCAGT 57.980 41.667 0.00 0.00 44.40 3.41
3451 3551 8.783660 AGACATATTTATGAACAGAGGGAGTA 57.216 34.615 4.63 0.00 37.15 2.59
3452 3552 7.682787 AGACATATTTATGAACAGAGGGAGT 57.317 36.000 4.63 0.00 37.15 3.85
3453 3553 8.970859 AAAGACATATTTATGAACAGAGGGAG 57.029 34.615 4.63 0.00 37.15 4.30
3454 3554 9.753674 AAAAAGACATATTTATGAACAGAGGGA 57.246 29.630 4.63 0.00 37.15 4.20
3515 3615 9.894783 GTGAATCTACGCTCTAAAATATGTCTA 57.105 33.333 0.00 0.00 0.00 2.59
3516 3616 8.634444 AGTGAATCTACGCTCTAAAATATGTCT 58.366 33.333 0.00 0.00 0.00 3.41
3517 3617 8.804688 AGTGAATCTACGCTCTAAAATATGTC 57.195 34.615 0.00 0.00 0.00 3.06
3518 3618 8.414003 TGAGTGAATCTACGCTCTAAAATATGT 58.586 33.333 0.00 0.00 44.58 2.29
3519 3619 8.803201 TGAGTGAATCTACGCTCTAAAATATG 57.197 34.615 0.00 0.00 44.58 1.78
3520 3620 9.988815 AATGAGTGAATCTACGCTCTAAAATAT 57.011 29.630 0.00 0.00 44.58 1.28
3521 3621 9.817809 AAATGAGTGAATCTACGCTCTAAAATA 57.182 29.630 0.00 0.00 44.58 1.40
3522 3622 8.723942 AAATGAGTGAATCTACGCTCTAAAAT 57.276 30.769 0.00 0.00 44.58 1.82
3523 3623 9.302345 CTAAATGAGTGAATCTACGCTCTAAAA 57.698 33.333 0.00 0.00 44.58 1.52
3524 3624 7.435488 GCTAAATGAGTGAATCTACGCTCTAAA 59.565 37.037 0.00 0.00 44.58 1.85
3525 3625 6.918569 GCTAAATGAGTGAATCTACGCTCTAA 59.081 38.462 0.00 0.00 44.58 2.10
3526 3626 6.263392 AGCTAAATGAGTGAATCTACGCTCTA 59.737 38.462 0.00 0.00 44.58 2.43
3527 3627 5.068460 AGCTAAATGAGTGAATCTACGCTCT 59.932 40.000 0.00 0.00 44.58 4.09
3528 3628 5.285651 AGCTAAATGAGTGAATCTACGCTC 58.714 41.667 0.00 0.00 44.55 5.03
3529 3629 5.269505 AGCTAAATGAGTGAATCTACGCT 57.730 39.130 0.00 0.00 0.00 5.07
3530 3630 4.446051 GGAGCTAAATGAGTGAATCTACGC 59.554 45.833 0.00 0.00 0.00 4.42
3531 3631 4.677378 CGGAGCTAAATGAGTGAATCTACG 59.323 45.833 0.00 0.00 0.00 3.51
3532 3632 5.593010 ACGGAGCTAAATGAGTGAATCTAC 58.407 41.667 0.00 0.00 0.00 2.59
3533 3633 5.854010 ACGGAGCTAAATGAGTGAATCTA 57.146 39.130 0.00 0.00 0.00 1.98
3534 3634 4.744795 ACGGAGCTAAATGAGTGAATCT 57.255 40.909 0.00 0.00 0.00 2.40
3535 3635 5.107298 GCATACGGAGCTAAATGAGTGAATC 60.107 44.000 0.00 0.00 0.00 2.52
3536 3636 4.752101 GCATACGGAGCTAAATGAGTGAAT 59.248 41.667 0.00 0.00 0.00 2.57
3537 3637 4.119862 GCATACGGAGCTAAATGAGTGAA 58.880 43.478 0.00 0.00 0.00 3.18
3538 3638 3.132111 TGCATACGGAGCTAAATGAGTGA 59.868 43.478 0.00 0.00 0.00 3.41
3539 3639 3.457234 TGCATACGGAGCTAAATGAGTG 58.543 45.455 0.00 0.00 0.00 3.51
3540 3640 3.133003 ACTGCATACGGAGCTAAATGAGT 59.867 43.478 0.00 0.00 32.91 3.41
3541 3641 3.722147 ACTGCATACGGAGCTAAATGAG 58.278 45.455 0.00 0.00 32.91 2.90
3542 3642 3.492656 GGACTGCATACGGAGCTAAATGA 60.493 47.826 0.00 0.00 32.91 2.57
3543 3643 2.802816 GGACTGCATACGGAGCTAAATG 59.197 50.000 0.00 0.00 32.91 2.32
3544 3644 2.545952 CGGACTGCATACGGAGCTAAAT 60.546 50.000 0.00 0.00 32.91 1.40
3545 3645 1.202371 CGGACTGCATACGGAGCTAAA 60.202 52.381 0.00 0.00 32.91 1.85
3546 3646 0.384309 CGGACTGCATACGGAGCTAA 59.616 55.000 0.00 0.00 32.91 3.09
3547 3647 2.030551 CGGACTGCATACGGAGCTA 58.969 57.895 0.00 0.00 32.91 3.32
3548 3648 2.808315 CGGACTGCATACGGAGCT 59.192 61.111 0.00 0.00 32.91 4.09
3549 3649 2.962253 GCGGACTGCATACGGAGC 60.962 66.667 0.00 0.00 45.45 4.70
3558 3658 0.659957 GAGATTCCAATGCGGACTGC 59.340 55.000 0.00 0.00 46.36 4.40
3559 3659 2.322355 AGAGATTCCAATGCGGACTG 57.678 50.000 0.00 0.00 46.36 3.51
3560 3660 4.487714 TTTAGAGATTCCAATGCGGACT 57.512 40.909 0.00 0.00 46.36 3.85
3561 3661 5.354234 TCTTTTTAGAGATTCCAATGCGGAC 59.646 40.000 0.00 0.00 46.36 4.79
3562 3662 5.354234 GTCTTTTTAGAGATTCCAATGCGGA 59.646 40.000 0.00 0.00 44.40 5.54
3563 3663 5.355350 AGTCTTTTTAGAGATTCCAATGCGG 59.645 40.000 0.00 0.00 0.00 5.69
3564 3664 6.428385 AGTCTTTTTAGAGATTCCAATGCG 57.572 37.500 0.00 0.00 0.00 4.73
3565 3665 7.597386 ACAAGTCTTTTTAGAGATTCCAATGC 58.403 34.615 0.00 0.00 0.00 3.56
3568 3668 9.490379 GAGTACAAGTCTTTTTAGAGATTCCAA 57.510 33.333 0.00 0.00 0.00 3.53
3569 3669 8.095169 GGAGTACAAGTCTTTTTAGAGATTCCA 58.905 37.037 0.00 0.00 0.00 3.53
3570 3670 7.549842 GGGAGTACAAGTCTTTTTAGAGATTCC 59.450 40.741 0.00 0.00 0.00 3.01
3571 3671 8.315482 AGGGAGTACAAGTCTTTTTAGAGATTC 58.685 37.037 0.00 0.00 0.00 2.52
3572 3672 8.208575 AGGGAGTACAAGTCTTTTTAGAGATT 57.791 34.615 0.00 0.00 0.00 2.40
3573 3673 7.676468 AGAGGGAGTACAAGTCTTTTTAGAGAT 59.324 37.037 0.00 0.00 0.00 2.75
3574 3674 7.011382 AGAGGGAGTACAAGTCTTTTTAGAGA 58.989 38.462 0.00 0.00 0.00 3.10
3575 3675 7.093992 CAGAGGGAGTACAAGTCTTTTTAGAG 58.906 42.308 0.00 0.00 0.00 2.43
3576 3676 6.553852 ACAGAGGGAGTACAAGTCTTTTTAGA 59.446 38.462 0.00 0.00 0.00 2.10
3577 3677 6.760291 ACAGAGGGAGTACAAGTCTTTTTAG 58.240 40.000 0.00 0.00 0.00 1.85
3578 3678 6.239515 GGACAGAGGGAGTACAAGTCTTTTTA 60.240 42.308 0.00 0.00 0.00 1.52
3579 3679 5.454897 GGACAGAGGGAGTACAAGTCTTTTT 60.455 44.000 0.00 0.00 0.00 1.94
3580 3680 4.040584 GGACAGAGGGAGTACAAGTCTTTT 59.959 45.833 0.00 0.00 0.00 2.27
3581 3681 3.579151 GGACAGAGGGAGTACAAGTCTTT 59.421 47.826 0.00 0.00 0.00 2.52
3582 3682 3.166679 GGACAGAGGGAGTACAAGTCTT 58.833 50.000 0.00 0.00 0.00 3.01
3583 3683 2.810164 GGACAGAGGGAGTACAAGTCT 58.190 52.381 0.00 0.00 0.00 3.24
3584 3684 1.473278 CGGACAGAGGGAGTACAAGTC 59.527 57.143 0.00 0.00 0.00 3.01
3585 3685 1.075050 TCGGACAGAGGGAGTACAAGT 59.925 52.381 0.00 0.00 0.00 3.16
3586 3686 1.835494 TCGGACAGAGGGAGTACAAG 58.165 55.000 0.00 0.00 0.00 3.16
3587 3687 2.297698 TTCGGACAGAGGGAGTACAA 57.702 50.000 0.00 0.00 0.00 2.41
3588 3688 2.297698 TTTCGGACAGAGGGAGTACA 57.702 50.000 0.00 0.00 0.00 2.90
3589 3689 3.889520 ATTTTCGGACAGAGGGAGTAC 57.110 47.619 0.00 0.00 0.00 2.73
3590 3690 4.607239 AGTATTTTCGGACAGAGGGAGTA 58.393 43.478 0.00 0.00 0.00 2.59
3591 3691 3.442076 AGTATTTTCGGACAGAGGGAGT 58.558 45.455 0.00 0.00 0.00 3.85
3592 3692 4.184629 CAAGTATTTTCGGACAGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
3593 3693 3.581332 ACAAGTATTTTCGGACAGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
3594 3694 3.933332 GACAAGTATTTTCGGACAGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
3595 3695 4.566004 TGACAAGTATTTTCGGACAGAGG 58.434 43.478 0.00 0.00 0.00 3.69
3596 3696 5.869344 TGATGACAAGTATTTTCGGACAGAG 59.131 40.000 0.00 0.00 0.00 3.35
3597 3697 5.789521 TGATGACAAGTATTTTCGGACAGA 58.210 37.500 0.00 0.00 0.00 3.41
3598 3698 6.480524 TTGATGACAAGTATTTTCGGACAG 57.519 37.500 0.00 0.00 0.00 3.51
3599 3699 6.869315 TTTGATGACAAGTATTTTCGGACA 57.131 33.333 0.00 0.00 37.32 4.02
3600 3700 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
3601 3701 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
3602 3702 7.312154 TCCATTTTGATGACAAGTATTTTCGG 58.688 34.615 0.00 0.00 37.32 4.30
3603 3703 8.915871 ATCCATTTTGATGACAAGTATTTTCG 57.084 30.769 0.00 0.00 37.32 3.46
3609 3709 9.177608 CCTTCTTATCCATTTTGATGACAAGTA 57.822 33.333 0.00 0.00 37.32 2.24
3610 3710 7.123247 CCCTTCTTATCCATTTTGATGACAAGT 59.877 37.037 0.00 0.00 37.32 3.16
3611 3711 7.340232 TCCCTTCTTATCCATTTTGATGACAAG 59.660 37.037 0.00 0.00 37.32 3.16
3612 3712 7.181361 TCCCTTCTTATCCATTTTGATGACAA 58.819 34.615 0.00 0.00 0.00 3.18
3613 3713 6.730447 TCCCTTCTTATCCATTTTGATGACA 58.270 36.000 0.00 0.00 0.00 3.58
3614 3714 7.286316 ACATCCCTTCTTATCCATTTTGATGAC 59.714 37.037 0.00 0.00 32.39 3.06
3615 3715 7.356680 ACATCCCTTCTTATCCATTTTGATGA 58.643 34.615 0.00 0.00 32.39 2.92
3616 3716 7.592885 ACATCCCTTCTTATCCATTTTGATG 57.407 36.000 0.00 0.00 33.80 3.07
3617 3717 9.525826 GATACATCCCTTCTTATCCATTTTGAT 57.474 33.333 0.00 0.00 0.00 2.57
3618 3718 8.727149 AGATACATCCCTTCTTATCCATTTTGA 58.273 33.333 0.00 0.00 0.00 2.69
3619 3719 8.930846 AGATACATCCCTTCTTATCCATTTTG 57.069 34.615 0.00 0.00 0.00 2.44
3642 3742 9.480053 CCGTCCGGAAATAATTTTAGTTATAGA 57.520 33.333 5.23 0.00 37.50 1.98
3643 3743 9.480053 TCCGTCCGGAAATAATTTTAGTTATAG 57.520 33.333 5.23 0.00 42.05 1.31
3644 3744 9.480053 CTCCGTCCGGAAATAATTTTAGTTATA 57.520 33.333 5.23 0.00 44.66 0.98
3645 3745 7.443272 CCTCCGTCCGGAAATAATTTTAGTTAT 59.557 37.037 5.23 0.00 44.66 1.89
3646 3746 6.762661 CCTCCGTCCGGAAATAATTTTAGTTA 59.237 38.462 5.23 0.00 44.66 2.24
3647 3747 5.587443 CCTCCGTCCGGAAATAATTTTAGTT 59.413 40.000 5.23 0.00 44.66 2.24
3648 3748 5.121105 CCTCCGTCCGGAAATAATTTTAGT 58.879 41.667 5.23 0.00 44.66 2.24
3649 3749 4.514066 CCCTCCGTCCGGAAATAATTTTAG 59.486 45.833 5.23 0.00 44.66 1.85
3650 3750 4.163839 TCCCTCCGTCCGGAAATAATTTTA 59.836 41.667 5.23 0.00 44.66 1.52
3651 3751 3.054213 TCCCTCCGTCCGGAAATAATTTT 60.054 43.478 5.23 0.00 44.66 1.82
3652 3752 2.506644 TCCCTCCGTCCGGAAATAATTT 59.493 45.455 5.23 0.00 44.66 1.82
3653 3753 2.104281 CTCCCTCCGTCCGGAAATAATT 59.896 50.000 5.23 0.00 44.66 1.40
3654 3754 1.692519 CTCCCTCCGTCCGGAAATAAT 59.307 52.381 5.23 0.00 44.66 1.28
3655 3755 1.117150 CTCCCTCCGTCCGGAAATAA 58.883 55.000 5.23 0.00 44.66 1.40
3656 3756 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
3657 3757 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
3658 3758 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
3659 3759 0.032813 AATACTCCCTCCGTCCGGAA 60.033 55.000 5.23 0.00 44.66 4.30
3660 3760 0.032813 AAATACTCCCTCCGTCCGGA 60.033 55.000 0.00 0.00 42.90 5.14
3661 3761 1.612463 CTAAATACTCCCTCCGTCCGG 59.388 57.143 0.00 0.00 0.00 5.14
3662 3762 1.612463 CCTAAATACTCCCTCCGTCCG 59.388 57.143 0.00 0.00 0.00 4.79
3663 3763 2.954792 TCCTAAATACTCCCTCCGTCC 58.045 52.381 0.00 0.00 0.00 4.79
3664 3764 3.243334 CGTTCCTAAATACTCCCTCCGTC 60.243 52.174 0.00 0.00 0.00 4.79
3665 3765 2.692041 CGTTCCTAAATACTCCCTCCGT 59.308 50.000 0.00 0.00 0.00 4.69
3666 3766 2.035576 CCGTTCCTAAATACTCCCTCCG 59.964 54.545 0.00 0.00 0.00 4.63
3667 3767 3.303049 TCCGTTCCTAAATACTCCCTCC 58.697 50.000 0.00 0.00 0.00 4.30
3668 3768 3.321396 CCTCCGTTCCTAAATACTCCCTC 59.679 52.174 0.00 0.00 0.00 4.30
3669 3769 3.306613 CCTCCGTTCCTAAATACTCCCT 58.693 50.000 0.00 0.00 0.00 4.20
3670 3770 2.367894 CCCTCCGTTCCTAAATACTCCC 59.632 54.545 0.00 0.00 0.00 4.30
3671 3771 3.303049 TCCCTCCGTTCCTAAATACTCC 58.697 50.000 0.00 0.00 0.00 3.85
3672 3772 3.959449 ACTCCCTCCGTTCCTAAATACTC 59.041 47.826 0.00 0.00 0.00 2.59
3673 3773 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
3674 3774 7.178097 ACATATACTCCCTCCGTTCCTAAATAC 59.822 40.741 0.00 0.00 0.00 1.89
3675 3775 7.243824 ACATATACTCCCTCCGTTCCTAAATA 58.756 38.462 0.00 0.00 0.00 1.40
3676 3776 6.082707 ACATATACTCCCTCCGTTCCTAAAT 58.917 40.000 0.00 0.00 0.00 1.40
3677 3777 5.461327 ACATATACTCCCTCCGTTCCTAAA 58.539 41.667 0.00 0.00 0.00 1.85
3678 3778 5.070823 ACATATACTCCCTCCGTTCCTAA 57.929 43.478 0.00 0.00 0.00 2.69
3679 3779 4.736611 ACATATACTCCCTCCGTTCCTA 57.263 45.455 0.00 0.00 0.00 2.94
3680 3780 3.614568 ACATATACTCCCTCCGTTCCT 57.385 47.619 0.00 0.00 0.00 3.36
3681 3781 5.125739 CAGATACATATACTCCCTCCGTTCC 59.874 48.000 0.00 0.00 0.00 3.62
3682 3782 5.125739 CCAGATACATATACTCCCTCCGTTC 59.874 48.000 0.00 0.00 0.00 3.95
3683 3783 5.017490 CCAGATACATATACTCCCTCCGTT 58.983 45.833 0.00 0.00 0.00 4.44
3684 3784 4.601084 CCAGATACATATACTCCCTCCGT 58.399 47.826 0.00 0.00 0.00 4.69
3685 3785 3.381908 GCCAGATACATATACTCCCTCCG 59.618 52.174 0.00 0.00 0.00 4.63
3686 3786 4.353777 TGCCAGATACATATACTCCCTCC 58.646 47.826 0.00 0.00 0.00 4.30
3687 3787 5.896678 AGATGCCAGATACATATACTCCCTC 59.103 44.000 0.00 0.00 0.00 4.30
3688 3788 5.848004 AGATGCCAGATACATATACTCCCT 58.152 41.667 0.00 0.00 0.00 4.20
3689 3789 5.658634 TGAGATGCCAGATACATATACTCCC 59.341 44.000 0.00 0.00 0.00 4.30
3690 3790 6.782082 TGAGATGCCAGATACATATACTCC 57.218 41.667 0.00 0.00 0.00 3.85
3691 3791 9.664332 ATTTTGAGATGCCAGATACATATACTC 57.336 33.333 0.00 0.00 0.00 2.59
3733 3834 6.555463 TTTAGGTCAAGGGAGTAGTTATGG 57.445 41.667 0.00 0.00 0.00 2.74
3816 3920 5.998553 TGAAACGCAATTATGGTTTACGAA 58.001 33.333 0.00 0.00 33.17 3.85
3849 3958 8.908903 TGCTTATTCTGAGGTGTTAAAAAGAAA 58.091 29.630 0.00 0.00 0.00 2.52
3910 4023 7.095691 CGTTATTTTCCAAAATCACAGCAACAT 60.096 33.333 0.45 0.00 39.24 2.71
3961 4074 6.543831 AGAGACATTTTTGCACTCTACAGTTT 59.456 34.615 0.00 0.00 36.39 2.66
3973 4086 8.856490 TTTTTCTACAAGAGAGACATTTTTGC 57.144 30.769 0.00 0.00 34.93 3.68
3995 4108 7.816995 TCAACATTTTTGCACTCTACAGTTTTT 59.183 29.630 0.00 0.00 0.00 1.94
3996 4109 7.319646 TCAACATTTTTGCACTCTACAGTTTT 58.680 30.769 0.00 0.00 0.00 2.43
3997 4110 6.862209 TCAACATTTTTGCACTCTACAGTTT 58.138 32.000 0.00 0.00 0.00 2.66
3998 4111 6.449635 TCAACATTTTTGCACTCTACAGTT 57.550 33.333 0.00 0.00 0.00 3.16
3999 4112 6.127758 TGTTCAACATTTTTGCACTCTACAGT 60.128 34.615 0.00 0.00 0.00 3.55
4000 4113 6.264832 TGTTCAACATTTTTGCACTCTACAG 58.735 36.000 0.00 0.00 0.00 2.74
4001 4114 6.201226 TGTTCAACATTTTTGCACTCTACA 57.799 33.333 0.00 0.00 0.00 2.74
4002 4115 6.922389 GTTGTTCAACATTTTTGCACTCTAC 58.078 36.000 10.30 0.00 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.