>input_sequence_39142
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------------------------------------------------------------------------------AT
GGCGTCGTCCCCCGCGCGCCCCGCCGCCGCGTCCGTCTCCGGCGCCTTCGGCCTCCCGCCCGACGCCCGCTGCTCCTTCG
ACCAGACGCGCCGCCGCGCCGAGGTACGTCCTGTCTCTCTGTCTCTCTGTCTGTCTGCCTGCCGGCCTCCATCTCCCTAC
TACTACCACCACCACGCGAGGTCCCTCGATCTCGGGGGGTTTCTGAGGCGGGGGTTGATGCGTGTGTGGGCGGGGAAAGC
AGGATTCGCAGGACAAGAGGCAGCTGGTGCGGACGTTCGTCAACGTGTACGGCCAGGAGGGCTACCCCAAGGAGGCCGTC
ATGGCGGCCGTCGAGGAGTGCATGAGGAAGCAGGCCGAGGGCCTGCTGCATTCGCTCGAGGGCATCGGCGGGAGGCTCTC
GCAGCTCGAGCTCTACTGCTACAAGCTCGAGCGCTCCATCGGGGAGCTGCGCAGCGACGTCATGGACTATCACAGCGAGG
GCACCGTCAACTTCCGCTGCCTCGACAAGAATCTCAGACAGGTGCGTGCTCTGCTCTGCCC-----TCAGATCCACGCAC
GCCCAGCCAATTACTGCCAAATGCCTTGCTCTCGAGTACCCAATTAGTTGAGG------------------CAGATTTCA
CCATTGAGCATTTGCGTTTCACGTTTGTCTTGTGTGGTGCTTAAGGAGTTACTTCAGCGGAACATTTTCACAGGCTGCTA
TTCTTAAACTACGTACGGTGGAGTCG--------GACTTACTGTTCTCGTGAGATTTGGATCATTTTTGCTGCATTAAGA
ATATGCTTCTGAGCTGAACAATCGTTTCTTCTGTTGACCAGGTTCAGAAAGCTGTGCAGATGCTTCAGGATAAGCATGAG
C------------CG------------CAGCAACTGGCCAAACTTCAAATAGCGCATGAATTCCCTGCTAGAACAAATGA
AGCCACTGCCTTGTCGATGCTCGCTGCAAGGGAAAATGTCAATGATCAGAGCACACAATTCGCCAACCCTGAGGTCTCTT
TTGTGCCAATTCACCAAGTTAATGCGATGCAGTCTCCTGCTATGCCGAACCAAAGTAGTGGTGGTTATATTCTGCAGCAA
CTTGTGCCCGTCTCTTTGAGCACACAACATGATCAGCAACATCCGAGCCAAGCTGCGGTGTACTATATGCAAAGCCAAAA
TCAAGTGAACTGCGCAGATAACAAACCATCCGAGTCTTTTGTTCAGGTTATGCAGCCGCATGTCCAGAACTCTGAAGCCA
GGGTTGCAGTTGAGCTACCTCAGAAATCTAGTCAGCCAACGGAAATGTACCCTCCAATGCAGCATCATATGCTACAAATG
CCTGCTCAGCATCACGAGTCACAGGCATGGCGATCACAGCCCCCTGTCGCGCAACAGCAGCACTACAGTGTTCAGCAAGT
CCCACCGCAGATGGTTCAACAGAAAACATCTTCTCCTCATGCTCAAAGTACTCCTCAAGTCACACTCATGTATCCTCAAT
ACTCTTCTCAGAAGCCTGCCAATGCTACCACTGAGCCACTTCCGAGAAGTTTGGTTGGGCAGTCTCCATACTCTTCACCC
CAGCAGAAGCATCATGAAGTCATGCCTTCGTTTTATGGCCAAGGCAACACAATTTTGCTTCCCACGGCAGAGCATAATAT
CCAACATCAACAGCCACAGCAACTGCAAACACAGAGCCAGGCCTCATGCCCACCTCAACCAAGCAAGCCCAGCCACTGCA
GCGTTGCATCATATGCTGTTCAGGGTAGTGGCCGAGCCTACACTGCCACATATAAGAATCCTGCCGAGAGTCCTGCAACT
GTTGTTGCTGTTCTGCCCCAGCATTCGGCAACAGCTCCTATGGCGTTTCATCATTTGGGGCCACAAATCTTGCATAAGAA
TCCATATGGAAGTATGTTCGAAACGGCCAGTGTAGTAGGGTATCCACATGATCTAGTTGGGAGTATGACGCTCCCAGTGG
TGACTGCGGACTCCAGTAACATGGTTGATAAGCTCAATGCTGGTAGCAATGTTACATCCCCGCGAGACTGGCCTGCATAG
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------
>chr3A_1_TraesCS3A01G272000
CGCGTGTTTTTCATAGACATAGACGCCTCTCGAGTCAAACTATAATTCCCTG-GCGATTAGAGGATCATCGTGATACCGA
CAGCTCCAATATGCTTACTGATACCGGCCACATCTCCCCATCAAAACCGGTGTCACAACCAGCGTGGCAAACCCAATACC
CGTTCACGCACATTTCTTTTGAATCACGCACATGACTCACGAGGCGGAGACCTGAGCGTGACGCTGCACCCAACCCAACC
CAACCAAACCCAAGCTGACCCGAACCAACCA-------------------------GGCCCTCTCCCGTCTTGATCTGAA
AACGATCGTCCAGCAAGGCAAGCAAGGTATCCCAATGGCGATCTCCTCCCTGCTGGGCGTCAGTAAACAAACGAGCACGG
CCACA--TCCAAGTCGAAGCAGATCTCACTCGCCCTGAAGTCCACCCACGCCCCCTCTTTCCCCACTTGTCCCCGTCGTC
CCGTCGCCCTCCCCCATTTTTATTGCTCCCCACGCCTCGCG----------CTCCGCTCCTCTGATTGGCCTCCCCTCTG
TTTCACCCTGCTTTTCCCTTTGCCCGCTTTGCTTCTACTCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCGCGCACCAACCCAAAACCCTATCCGGCCCGCGCGCCCAT
GGCGTCGTCCCCCGCGCGCCCCGCCGCCGCGTCCGTCTCCGGCGCCTTCGGCCTCCCGCCCGACGCCCGCTGCTCCTTCG
ACCAGACGCGCCGCCGCGCCGAGGTACGTCCTGTCTCTCTGTCTCTCTGTCTGTCTGCCTGCCGGCCTCCATCTCCCTAC
TACTACCACCACCACGCGAGGTCCCTCGATCTCGGGGGGTTTCTGAGGCGGGGGTTGATGCGTGTGTGGGCGGGGAAAGC
AGGATTCGCAGGACAAGAGGCAGCTGGTGCGGACGTTCGTCAACGTGTACGGCCAGGAGGGCTACCCCAAGGAGGCCGTC
ATGGCGGCCGTCGAGGAGTGCATGAGGAAGCAGGCCGAGGGCCTGCTGCATTCGCTCGAGGGCATCGGCGGGAGGCTCTC
GCAGCTCGAGCTCTACTGCTACAAGCTCGAGCGCTCCATCGGGGAGCTGCGCAGCGACGTCATGGACTATCACAGCGAGG
GCACCGTCAACTTCCGCTGCCTCGACAAGAATCTCAGACAGGTGCGTGCTCTGCTCTGCCC-----TCAGATCCACGCAC
GCCCAGCCAATTACTGCCAAATGCCTTGCTCTCGAGTACCCAATTAGTTGAGG------------------CAGATTTCA
CCATTGAGCATTTGCGTTTCACGTTTGTCTTGTGTGGTGCTTAAGGAGTTACTTCAGCGGAACATTTTCACAGGCTGCTA
TTCTTAAACTACGTACGGTGGAGTCG--------GACTTACTGTTCTCGTGAGATTTGGATCATTTTTGCTGCATTAAGA
ATATGCTTCTGAGCTGAACAATCGTTTCTTCTGTTGACCAGGTTCAGAAAGCTGTGCAGATGCTTCAGGATAAGCATGAG
C------------CG------------CAGCAACTGGCCAAACTTCAAATAGCGCATGAATTCCCTGCTAGAACAAATGA
AGCCACTGCCTTGTCGATGCTCGCTGCAAGGGAAAATGTCAATGATCAGAGCACACAATTCGCCAACCCTGAGGTCTCTT
TTGTGCCAATTCACCAAGTTAATGCGATGCAGTCTCCTGCTATGCCGAACCAAAGTAGTGGTGGTTATATTCTGCAGCAA
CTTGTGCCCGTCTCTTTGAGCACACAACATGATCAGCAACATCCGAGCCAAGCTGCGGTGTACTATATGCAAAGCCAAAA
TCAAGTGAACTGCGCAGATAACAAACCATCCGAGTCTTTTGTTCAGGTTATGCAGCCGCATGTCCAGAACTCTGAAGCCA
GGGTTGCAGTTGAGCTACCTCAGAAATCTAGTCAGCCAACGGAAATGTACCCTCCAATGCAGCATCATATGCTACAAATG
CCTGCTCAGCATCACGAGTCACAGGCATGGCGATCACAGCCCCCTGTCGCGCAACAGCAGCACTACAGTGTTCAGCAAGT
CCCACCGCAGATGGTTCAACAGAAAACATCTTCTCCTCATGCTCAAAGTACTCCTCAAGTCACACTCATGTATCCTCAAT
ACTCTTCTCAGAAGCCTGCCAATGCTACCACTGAGCCACTTCCGAGAAGTTTGGTTGGGCAGTCTCCATACTCTTCACCC
CAGCAGAAGCATCATGAAGTCATGCCTTCGTTTTATGGCCAAGGCAACACAATTTTGCTTCCCACGGCAGAGCATAATAT
CCAACATCAACAGCCACAGCAACTGCAAACACAGAGCCAGGCCTCATGCCCACCTCAACCAAGCAAGCCCAGCCACTGCA
GCGTTGCATCATATGCTGTTCAGGGTAGTGGCCGAGCCTACACTGCCACATATAAGAATCCTGCCGAGAGTCCTGCAACT
GTTGTTGCTGTTCTGCCCCAGCATTCGGCAACAGCTCCTATGGCGTTTCATCATTTGGGGCCACAAATCTTGCATAAGAA
TCCATATGGAAGTATGTTCGAAACGGCCAGTGTAGTAGGGTATCCACATGATCTAGTTGGGAGTATGACGCTCCCAGTGG
TGACTGCGGACTCCAGTAACATGGTTGATAAGCTCAATGCTGGTAGCAATGTTACATCCCCGCGAGACTGGCCTGCATAG
TGCAGAATGGGCAGTTATTGGGTACTTCATTGCTACCACAAAACTTATTTCCATGACTATAGCTGGAAGCTTGTCGGCTC
TCACCCGGGTATTTCATCTGGCTTCCTTTTTATTAGCCAGCAGATTGGTACAGATCCTTCTACTC--TTTTTTCTGCTGA
AGGGTCAATCTGAAATAAGAATGATAGATTAGTCTAGTGATGATGCTGGCGTATGTCCTCACTTTTAATGGACATATCTT
GCTTGTAACCGACAGTTGGCGATGAACCTGTGCCTTTGCGATATGAATATATGACGAGTTTACATCATCTTATCCGCTGT
TTAAATATCGGTTTACCACAGTTTATGTAGTCTTGTCATGCCATATATTTTTTTTATT----TGGGGTTTTGTAGCATGT
AGAGTAGTAAAGAAGAAAAGAACTGAGATATACTCCCTCTGTTCATAAATATGTCTTTTTTGAGATTTCAATAAGGACTA
CATATGGATGTATATAGACATATTTTAGAGCGTAGATTCACTCATTTAGCTCCGTATGCAGTCCGCATTGGAATCTCTAA
AAAGACTTGTACTCCCTCTGTCCGAAAATACTTGTCATCAAAATGGATAAGAAGGGATGTATCTATAACTAAAATTATTT
CCGGACGGAGGGAGTATTTAGGAACGGAGGGAGTATATGTATCT-GGCATCTCAAAATTAACTTATCAATAGCCCATAAC
TACTCCCTTGACCTAAAAGGTCTTATATATTTTTTAAAACTCAAAAAGGTCTT---ATATTAGTTTACAGAGGGAGTATT
TC-----GTAAACCATAATTGCGTTTCAGATGTAGCAT-TTC--TTTTTAACACC-TCAGAATAAGCAGTATGTGTGCGA
ACACTGCCACTGGAGAAAGCAAATGTTGCTGTGATTTTGGAAAATAACGGCCGGAACTTCTCTCTTGTAGAAAAAACTGT
AGAGTGCAAAAATGTCTCTCTTGTAGAAAAAACTGTAGAGTGCAAAAATGTTGAACAAC
>chr3D_4
---GTGTTTTTCATAGACATAGACGCCTCTCGAATAAACCTATTAATTCCCCAGCAATCAGAGGATCACCGTGATACCGA
CGGCTCTAATATGCTACTGA------------------------------------------------------------
---TCACGCACATTTCTTTTTAATCACGCACATGACTCACGAGGCGGAGACCTGAGCGTGACACTGCACCCAACCCAACC
------------------------------A-------------------------GACCGTCTCCCGTCT-GATCTGAA
AACGATCGTCCAGCAAGGCAAGCAAGGTATCCCAACGGCGATCTCCCTGCTGCTGGGCGTCAGTAAACAAACAAGCACGG
CCACA--TCCAAGTCGAACCAGATCTCACTCGCCCCGAAGTCCACCCACGCCCCCTCTTTCCCCACTTGTCCCCGTCGTC
CCGTCGCCCTCCCCCATTTTTATTGCTCCCCACGCCTCGATCTCGCCTCGCCTCCGCTCCTCTGATTGGCCTCCCCTCTG
TTTCACTCTGCTTTTCCCTTTGCCCGCTTTGCTTCTACTCC--------GCCCGCCCGCCTCTCTTTCCTCGCCCCTTCC
TTCGCTTCGG----------ATTCCCTCCCATCCCCCCCGGCTCTCCCAC------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------CCGCGCACCAACCCAAAACCCTAGCCAGCCCGCGCGCCCAT
GGCGTCGTCCCCCGCGCGCCCCGCCGCCGCGTCCGTCTCCGGCGCCTTCGGCCTCCCGCCCGACGCCCGCTGCTCCTTCG
ACCAGACGCGCCGCCGCGCCGAGGTACGTCCTGC----CTGACTATCTCTCTGTCTGTCTGTCGGCCTCCATCTCCCTAC
TACTACCACCACCACGCGAGGTCCCTCGATCTCGGGC-GTTTCTGAGGCGGGGGTTGATGCGTGTGTGAGCGGGGAAAGC
AGGATTCGCAGGACAAGAGGCAGCTGGTGCGGACGTTCGTCAACGTGTACGGCCAGGAGGGCTACCCCAAGGAGGCCGTC
ATGGCGGCCGTCGAGGAGTGCATGAGGAAGCAGGCCGAGGGCCTGCTGCATTCGCTCGAGGGCATCGGCGGGAGGCTCTC
GCAGCTCGAGCTCTACTGCTACAAGCTCGAGCGCTCCATCGGGGAGCTGCGCAGCGACGTCATGGACTACCACAGCGAGG
GCACCGTCAACTTCCGCTGCCTCGACAAAAATCTCAGACAGGTA----------CCTGCCCCGCCTTCAGATCGACGCAC
GCCCACCCAATTACTGCCAAATGTCTTGCTCTCGAGTACCCAATTAGTTGAGG------------------CAGATTTCA
CCATTGAGCATTTGCGTTTCACGTTTGTCTTGTGTGATGCTTAAGGAGTCACAGCGGAACAA---TTTCACAGGCTGCTA
TTCTTAAACTACGTACGGTGGAGTCAGACACTCAGACTTACTGTTCTCGTGAGATTTGGATCATTTTTGTCACATTAAGA
ATATGTCTCTGAGCTGAACAATCGTTTCTTCTGTTGACCAGGTTCAGAAAGCTGTGCAGATGCTTCAGGATAAGCATGAG
C------------CGGCCGACACGGCGCAGCAACTGGCCAAACTTCAAATAGCGCATGAATTCCCTGCTCGAACAAATGA
AGCCACTGCCTTGTCGATGCTCACTGCAAGGGAAAATGTCAATGATCATAGCACACAATTCACCAACCCTGAGGTTTCTT
TTGTGCCAATTCACCAAGTTAATACCATGCAGTCTCCTGCTATGCCGAACCAAAGTAGCGGTGGTTATATTCTGCAGCAA
CTAGTGCCCGTCTCTTTGAGCACGCAACATGATCAGCAACATCCGAGCCAAGCTGCGGTGTACTATATGCAAAGCCAAAA
TCAGGTGAACTGCGCAGAGAACAAACCGTCCGAGTCTTTTGTTCAGGTTATGCAGCCGCATGTCCAGAACCCTGAAGCCA
GGGTTGCAGTTGAGCTACCTCAGAAATCTAGTCAGCCAACGGAAATGTACCCTCCACTGCAGCATCATATGCTACAAATG
CCTGCTCAGCATCACGAGTCACAGGCATGGCGATCACAGCCCCCTGTCGCGCAACAGCAGCACTACAGTGTTCAGCCAGT
CCCACCACAGATGGTTCAACAGAAAACATCTTCTCCTCATGCTCAAAGTACTCCTCAAGTCACGCTCATGTATCCTCAAT
ACTCTTCTCAGAAGCCTGCCAATGCTACCACTGAGCCACTTCCGAGAAGTTTGGTTGGGCAGTCTCCATACTCTTCACCC
CAGCAGAAGCATCATGAAGTCATGCATTCGTTTTATGGCCAAGGCAACACAATTTTGCTTCCCACGGCAGAGCATAATAT
CCAGCATCAACAGCCACAGCAAATGCAAACACAGAGCCAGGCCTCATGCCCACCTCAACCAAGCAAGCCCAGCCACTGCA
GTGTTGCATCATATGCTGTTCAGGGTAGTGGCCGAGCCTACACTGCCACATATAAGAATCCTGCCGAGAGCCCTGCAACT
GTTGTTGCTGTTCTGCCTCAGCATTCGGCAACAGCTCCTATGGCGTTTCATCATTTGGGGCCACAAATCTTGCATAAGAA
TCCATATGGAAGTATGTTCGAAACGACCAGTGTAGTAGGGTATCCACATGATCAGGTTGGGAGTATGACGCTCCCAGTGG
TGACTGCGGACTCCAGTGCCATGGTTGATAAGCTCAATGCTGGTAGCAATGTTACATCCCCGCGAGACTGGCCTGCATAG
TGCAGAATGGGCAGTTATTGGGTACTTCATTGCTACCACAAAACTTATTTCCATGACTATAGCTGGAAGCTTGTCGG--C
TCACCCGGGTATTTCATCTGGCTTCCTTTTTATTAGCCAGCAGATTGGTACAGATCCTTCTACTCTCTTTTTTCTGCTGA
AGGGTCAATCTGAAATAAGAATGATAGATTAGTCTAGTGATGATGCTGGCATATGTCCTCACTTTTAATGGACATATCTT
GCTTGTAACCGACAGTTGGCGATGAACCTGTGCCTTTGCGATATGAATATATGACGAGTTTACATTATCTTATCAGCTGT
TTAAATATCGGTTTACCACAGTTTATGTAGGCTTGTCATGCCATATTATTTATTTATTTATCTGGGTTTTTGTAGCATGT
AGAGTAGTAAAGAAGAAAAGAGCTCAGATA--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------TATATGTATCTAGGCATCTAAAAATTAACTTATCAATAGCTCATAAC
TACTCCCTTGA-----------------------------TCTAAAAGGTCTT---GTATTAGTTTACAGAGGGAGTATA
TCTTTTCATAAACCATAATTGC-TTTCAGATGTAGCAACTTTCATTTTTAACACC-TCAGAATAAGCAGTATGTGTGCGA
ACACTGCCACTGGAGAAAGCAAGTGTTGCTGTGATTTTGGAAAATAACGGCCGGAAGTTCTCTCTTGGAGGAAGAACTGT
AGAGTACAAA-------------------------------------------------
>chr3B_5
----TGTTTTTCGTAGACGTAGACGCCTCTCGAATCAAACTATTAA-TCCCCAGCGATCAGAGGATCACCGTGATACCGA
CAACTCTAATATGC-TACTGATACCGGCCGCATCTTCCCATCAAAACCAGTGTGGCAAACGCAGACCCATC---------
----CACGCACATTTCTTTTTAATCACGCACATGACTCACGAGATGGAGACCTGAGCGTGACACTGCACCCAACCCAACC
------------------------------AAACCCAAGCTGACCCGAACCAACCAGACCGTCTCCCGTCTTGATCTGAA
AACGATCGTCCAGCAAGGCAAGCAAGGTATCCCAATGGCGATCTCC---CTGCTGGCCGTCAGTAAACAAACGAACACGG
CCACACATCCAAGTCGAACCAGATCTCACTCGCCCCGAAGTCCACCCACGCTCCCTCTTTCCCCACTTGTCCCCGTCGTC
CCGTCGCCCTCC-CCATTTTTATTGCTCCCCACGCCTCGATCTCGCCTCGCCTCCGCTCCTCTGATTGGCCTCTCCTCTG
TTTCACTCTGCTTTTCCCTTTGCCCGCTTTGCTTCTACTCCTCTCACTCGCCCGCCCGCCTCTCTTTCCTCGCCCCTTCC
TTCGCTTCGGATTCCCTCCCATCCCGTCCCCTCCCCCCCGGCTCTCTCGCT-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------CGCGCACCAACCCAAAACCCTAGCCAGCCCGCACGCCCAT
GGCGTCGTCCCCCGCGCGCCCCGCCGCCGCGTCCGTCTCCGGCGCCTTCGGCCTCCCGCCCGACGCCCGCTGCTCCTTCG
ACCAGACGCGCCGCCGCGCCGAGGTACGTCCT----CTCTGCCTATCTCTCTGTCTGTCTGTCGTCATCCATCTCCCTCC
TACTACCACCACCACGCGAGGTCCCTCGATCTCGGGG-GTTTCTGAGGCGGGGGTTGATGCGTGTGTGAGCGGGGAAAGC
AGGATTCGCAGGACAAGAGGCAGCTGGTGCGGACGTTCGTCAACGTGTACGGCCAGGAGGGCTACCCCAAGGAGGCCGTC
ATGGCGGCCGTCGAGGAGTGCATGAGGAAGCAGGCCGAGGGACTGCTGCATTCGCTCGAGGGCATCGGGGGGAGGCTCTC
GCAGCTCGAGCTCTACTGCTACAAGCTCGAGCGCTCCATCGGGGAGCTGCGCAGCGACGTCATGGACTACCACAGCGAGG
GCACCGTCAACTTCCGCTGCCTCGACAAGAATCTCAGACAGGTACGTGCTCTGCCCCGCCCCGCCTTCAGATCCACGCAC
GCTCTGCCAATTACTGCCGAATGTCTTGCTCTCGTCTCGAGTGCCCCGGCTCTGTTAGTCGAGGCACTATTCAGATTTCA
CCTTTGAGATTGTA-------------------GTGGTGCTTAAGGAGTTACTTCAGCGGAACATTTTCACAAGCTGCTA
TTCTTAAACTACGTACGGTGGAG--------TCAGACTTACTGTTCTCGTGAGATTTGGATCATTTTTGATGCATTAAGA
ATATGTCTCTGAGCTGAACAATCCTTTCTTCTGTTGACCAGGTTCAGAAAGCTGTGCAGATGCTTCAGGATAAGCATGAG
CCTGCTGACACGGCG------------CAGCAACTGGCCAAACTTCAAATAGCGCATGAATTCCCTGCTAGAACAAATGA
AGCCACTGCCTTGTCGATGCTTGCTTCAAGGGAAAATGTCAACGATCAGAGCACACAATTCGCCAACCCTGAGGTTTCTT
TTGTGCCAATTCACCAAGTTAATACCATGCAGTCTCCTGCTATGCCGAACCAAAGTAGCGGCGGTTATATTCTGCAGCAA
CTAGTGCCCGTCTCTTTGAGCACGCAACATGATCAGCAACATCCGAGCCAAGCTGCGGTGTACTATATGCAAAGCCAAAG
TCAAGTGAACTGCACAGAGAACAAACCGTCCGAGTCTTTTGTTCAGGTTATGCAGCCGCATGTCCAGAACCCTGAAGCCA
GGGTTGCAGTTGAGCTACCTCAGAAATCTAGTCAGCCAACGGAAATGTACCCTCCACTGCAGCATCATATGCTACAAATG
CCTGCTCAGCATCACGAGTCACAGGCATGGCGATCACAGCCACCTGTCGCGCAACAGCAGCACTACAGTGTTCAGCAAGT
CCCACCACAGATGGTTCAACAGAAAACATCTTCTCCTCATGCTCAAAGTACTCCTCAAGTCACGCTCATGTATCCTCAAT
ACTCTTCTCAGAAGCCTGCCAATGCTACCACTGAGCCACTTCCGAGAAGTTTGGTTGGGCAGTCTCCATACTCTTCACCC
CAGCAGAAGCATCATGAAGTCATGCCTTCGTTTTATGGCCAAGGCAACACAATTTTGCTTCCCACGGCAGAGCATAATAT
CCAGCATCAACAGCCACAGCAACTGCAAACGCAGAGCCAGGCCTCATGCCCACCTCAACCAAACAAGCCCAGCCACTGCA
GTGTTGCATCATATGCTGTTCAGGGTAGTGGCCGAGCCCACACTGCCACATATAAGAATCCTGCTGAGAGCCCTGCAACT
GTTGTTGCTGTTCTGCCTCAGCATTCGGCAACAGCTCCTATGGCGTTTCATCATTTGGGGCAACAAATCTTGCATAAGAA
TCCATATGGAAGTATGTTTGAAACGACCAGTGTAGTAGGGTATCCACATGATCTGGTTGGGAGTATGACGCTTCCAGTGG
TGACTGCGGACTCCAGTAACATGGTTGATAAGCTCAATGCTGGTAGCAATGTTACATCCCCGCGAGACTGGCCTGCATAG
CGCAGAATGGGCAGTTGTTGGGTACTTCATTGTTACCACAAAACTTATTTCCATGACTATAGCTGGAAGCTTGTCGGCTC
TCACCCGGGTATTTCATCTGGCTTCCTTTTTATTAGCCAGCAGATTGGTACAGATCCTTCTACTG--TTTTTTCTGCTGA
AGGGTCAATCTGAAATAAAAATGATAGATTAGTCTAGTGATGATGCTGGCGTATGTCCTCACTTTTAATGGACATATCTT
GCTTGTAACCGACAGTTGGCGATGAACCTGTGCCTATGCGATATGAATATATGACGAGTTTACATCATCTTATCAGCTGT
TTAAATATTGGTTTACCACAGTTTATGTAGTCTTGTCATGCCATATTTTTTATTTATTTATCTGGGTTTTTGTAGCATGT
AGAGTAGTAAAGAAGAAAAGAGCTCAGATA--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------TATATGTATCTAGGCATCTCAAAATTAACTTCTCAATAGCTCATAAC
TACTCCCTTGA-----------------------------TCTAAAAGATCGTATAGTATTAGTTTACGGAGGGAGTATA
TCTTTCTGTAAACCATAATTGCGTTTCAGATGTAGCACCTTC--TTTTTAACACCCTCGGAATAAGCAGTATGTGTGCGA
ACAATGCAACTGGAGAAAGCAATTGTTACTGTGATTTTGGAAAATAACGGCCGGAACT----------------------
-----------------------------------------------------------
>SNPs
SSS------------------------------S---------S-S-S--SS------S---------S-----------
------S----------------------S-----S------------S----SS---S-SSS-SSS--SSSSSSSSSSS
SSS-----------------S-----------------------------------------S-----------------
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------S--S-------------------
----------------------------------------------SSS-------------------------------
------------------S----------------S--------------------------------------------
---------------------------------------SS---------------------------------------
------S-----------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------S--S--------------
--------------------------------------------------------------------------------
---------------------------------SSS-----S--S---S--------S---S------------------
-------------------------------------S------------------------------S-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------S----------
-------------------------------------------S----------S-------------------------
-----------------------S--------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------S-------------------------------------------S----------
-----SS-------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------S----
-----------------------S-S--------------------------------S---------------------
--S--------------------S--------------------------------------------------------
------------------S--------S------------------------------------------S---------
--------------------------------------------------------S-----------------------
--------------------------------------------------------------------------------
------S--------------------------------------------------------S----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---S----------------------------------------------------------------------------
-S--------------------------------------------------------------------S---------
-----------------S--------------------------------------------------------------
-------------------------S----------------------------S-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------S-----
----------------------------------------------S----S--------------S-------------
---------------------S--S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------------------S------
-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S-------------S----------------------S
-------------------------------------S------------------------------------------
----------------------S--------------------------------------------S--S--S------
-----S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_255
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------CAACC
CAACCAAACCCAAGC-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------
>reverse_1624
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------CCTTGCTCTCGAGTACCCAA-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------
>forward_1182
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------CTCTCTGTCTGTCTGCCTGC------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------
>reverse_2724
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---ACATCAACAGCCACAGCAAC---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------
>forward_1510
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------GCAGCGACGTCATGGACTAT----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------
>reverse_3015
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------AGTTGGGAGTATGACGCTCC------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------
>forward_2898
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------CT
GTTGTTGCTGTTCTGCCC--------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------
>reverse_3756
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------------------------------------------TATTT
CCGGACGGAGGGAGT-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------
