Multiple sequence alignment - TraesCS3A01G270300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G270300 chr3A 100.000 4158 0 0 1 4158 497645898 497650055 0.000000e+00 7679.0
1 TraesCS3A01G270300 chr3A 95.556 45 2 0 3622 3666 497649475 497649519 5.770000e-09 73.1
2 TraesCS3A01G270300 chr3A 95.556 45 2 0 3578 3622 497649519 497649563 5.770000e-09 73.1
3 TraesCS3A01G270300 chr3D 95.125 1477 44 15 2695 4158 374927982 374929443 0.000000e+00 2303.0
4 TraesCS3A01G270300 chr3D 94.340 1060 35 11 714 1759 374926272 374927320 0.000000e+00 1602.0
5 TraesCS3A01G270300 chr3D 93.035 603 28 11 1752 2349 374927360 374927953 0.000000e+00 869.0
6 TraesCS3A01G270300 chr3D 86.405 331 35 6 1 329 374925946 374926268 1.840000e-93 353.0
7 TraesCS3A01G270300 chr3D 86.164 318 41 3 2348 2663 512739227 512739543 1.430000e-89 340.0
8 TraesCS3A01G270300 chr3D 97.778 45 1 0 3622 3666 374928873 374928917 1.240000e-10 78.7
9 TraesCS3A01G270300 chr3D 83.544 79 9 3 1805 1883 543971758 543971684 2.070000e-08 71.3
10 TraesCS3A01G270300 chr3B 91.887 1023 49 18 753 1759 488530074 488531078 0.000000e+00 1399.0
11 TraesCS3A01G270300 chr3B 95.688 719 19 4 2662 3371 488531746 488532461 0.000000e+00 1146.0
12 TraesCS3A01G270300 chr3B 93.772 562 27 6 3597 4158 488535391 488535944 0.000000e+00 837.0
13 TraesCS3A01G270300 chr3B 92.432 370 22 4 1980 2349 488531376 488531739 1.320000e-144 523.0
14 TraesCS3A01G270300 chr3B 92.603 365 21 4 352 714 432262616 432262976 1.710000e-143 520.0
15 TraesCS3A01G270300 chr3B 91.531 307 10 7 3369 3662 488535085 488535388 3.870000e-110 409.0
16 TraesCS3A01G270300 chr3B 89.362 141 13 2 1806 1946 488531247 488531385 4.270000e-40 176.0
17 TraesCS3A01G270300 chr3B 92.593 54 2 2 3571 3624 488535411 488535462 4.460000e-10 76.8
18 TraesCS3A01G270300 chr3B 90.000 60 3 3 1749 1807 488531118 488531175 1.600000e-09 75.0
19 TraesCS3A01G270300 chr3B 93.478 46 1 2 3571 3616 488535343 488535386 2.680000e-07 67.6
20 TraesCS3A01G270300 chr7A 94.038 369 17 2 352 715 628968764 628968396 4.700000e-154 555.0
21 TraesCS3A01G270300 chr4A 98.107 317 5 1 2348 2663 596636326 596636642 6.080000e-153 551.0
22 TraesCS3A01G270300 chr4A 83.770 191 27 3 1808 1996 674435028 674434840 1.190000e-40 178.0
23 TraesCS3A01G270300 chr1B 93.664 363 20 2 352 714 593920491 593920850 1.320000e-149 540.0
24 TraesCS3A01G270300 chr1B 93.750 320 19 1 2348 2666 447326449 447326130 2.910000e-131 479.0
25 TraesCS3A01G270300 chr1B 86.250 320 39 5 2348 2663 120466921 120466603 3.980000e-90 342.0
26 TraesCS3A01G270300 chr1B 78.818 203 35 7 1805 2004 395308242 395308045 3.370000e-26 130.0
27 TraesCS3A01G270300 chr5A 96.845 317 9 1 2348 2663 600889585 600889901 2.850000e-146 529.0
28 TraesCS3A01G270300 chr2A 95.283 318 14 1 2348 2664 526103308 526103625 1.730000e-138 503.0
29 TraesCS3A01G270300 chr2A 94.654 318 16 1 2348 2664 526114814 526115131 3.730000e-135 492.0
30 TraesCS3A01G270300 chr4B 90.761 368 30 2 348 715 539478531 539478894 4.830000e-134 488.0
31 TraesCS3A01G270300 chr4B 93.023 215 14 1 348 561 169650741 169650527 3.120000e-81 313.0
32 TraesCS3A01G270300 chr4B 91.121 214 11 1 348 561 169600825 169600620 2.450000e-72 283.0
33 TraesCS3A01G270300 chr4B 92.941 170 10 1 551 720 169600091 169599924 3.210000e-61 246.0
34 TraesCS3A01G270300 chr4B 82.895 228 33 2 477 698 368410923 368411150 2.540000e-47 200.0
35 TraesCS3A01G270300 chr4B 83.660 153 22 3 1853 2003 619362289 619362138 1.560000e-29 141.0
36 TraesCS3A01G270300 chr1D 88.889 387 24 8 352 719 25752015 25751629 3.790000e-125 459.0
37 TraesCS3A01G270300 chr1D 91.720 314 21 3 2348 2657 474917723 474917411 8.260000e-117 431.0
38 TraesCS3A01G270300 chr1A 89.441 322 29 3 2347 2663 570428210 570427889 6.470000e-108 401.0
39 TraesCS3A01G270300 chr1A 83.945 218 33 2 1805 2021 552982286 552982502 1.510000e-49 207.0
40 TraesCS3A01G270300 chr7B 86.769 325 41 2 393 715 604787409 604787733 1.100000e-95 361.0
41 TraesCS3A01G270300 chr2B 80.840 381 57 10 348 715 622653464 622653841 6.800000e-73 285.0
42 TraesCS3A01G270300 chr2B 83.051 177 21 7 1823 1996 278440450 278440280 7.200000e-33 152.0
43 TraesCS3A01G270300 chr7D 84.091 220 30 4 1805 2021 541964151 541963934 1.510000e-49 207.0
44 TraesCS3A01G270300 chr2D 84.733 131 17 3 1824 1952 250627586 250627715 1.210000e-25 128.0
45 TraesCS3A01G270300 chr2D 81.250 128 19 5 1808 1934 413788441 413788564 9.510000e-17 99.0
46 TraesCS3A01G270300 chrUn 100.000 28 0 0 1977 2004 160381551 160381578 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G270300 chr3A 497645898 497650055 4157 False 2608.400000 7679 97.037333 1 4158 3 chr3A.!!$F1 4157
1 TraesCS3A01G270300 chr3D 374925946 374929443 3497 False 1041.140000 2303 93.336600 1 4158 5 chr3D.!!$F2 4157
2 TraesCS3A01G270300 chr3B 488530074 488535944 5870 False 523.266667 1399 92.304778 753 4158 9 chr3B.!!$F2 3405
3 TraesCS3A01G270300 chr4B 169599924 169600825 901 True 264.500000 283 92.031000 348 720 2 chr4B.!!$R3 372

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
425 427 0.107459 GTGTCAGGAAGGGATGCCTC 60.107 60.0 6.10 0.0 30.41 4.70 F
1026 1569 0.404346 TCCCTTTTCAACCCCCTCCT 60.404 55.0 0.00 0.0 0.00 3.69 F
1307 1870 0.878961 ACGAAGTGAGCGTTTGACCC 60.879 55.0 0.00 0.0 42.51 4.46 F
2564 3254 0.037046 GGGCCTTTTTCTGTGCATGG 60.037 55.0 0.84 0.0 0.00 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1905 2593 0.178975 AAGCACGGAAAATCCACCCA 60.179 50.0 0.00 0.0 35.91 4.51 R
2545 3235 0.037046 CCATGCACAGAAAAAGGCCC 60.037 55.0 0.00 0.0 0.00 5.80 R
2599 3289 0.108520 CAACATCCAAGCATGCCACC 60.109 55.0 15.66 0.0 0.00 4.61 R
4069 7474 0.316204 GGACATGCTGCAGTGCTTTT 59.684 50.0 17.60 0.0 0.00 2.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 26 4.988065 CGACACATCGTGAAGGGT 57.012 55.556 0.24 0.00 43.66 4.34
29 31 1.336887 ACACATCGTGAAGGGTTCTCG 60.337 52.381 0.24 5.07 45.11 4.04
30 32 0.966920 ACATCGTGAAGGGTTCTCGT 59.033 50.000 10.01 0.00 44.37 4.18
43 45 2.349969 TTCTCGTGGATCCATCGCGG 62.350 60.000 19.62 16.89 0.00 6.46
49 51 4.585526 GATCCATCGCGGCGGTGA 62.586 66.667 34.84 21.26 40.81 4.02
69 71 1.852067 CGGAACAAGCGGGGACAAAG 61.852 60.000 0.00 0.00 0.00 2.77
70 72 1.524008 GGAACAAGCGGGGACAAAGG 61.524 60.000 0.00 0.00 0.00 3.11
72 74 2.597217 CAAGCGGGGACAAAGGCA 60.597 61.111 0.00 0.00 0.00 4.75
74 76 1.228862 AAGCGGGGACAAAGGCAAT 60.229 52.632 0.00 0.00 0.00 3.56
76 78 3.051392 GCGGGGACAAAGGCAATCG 62.051 63.158 0.00 0.00 0.00 3.34
81 83 1.678970 GACAAAGGCAATCGGGGCT 60.679 57.895 0.00 0.00 46.88 5.19
86 88 0.623723 AAGGCAATCGGGGCTAAGAA 59.376 50.000 0.00 0.00 43.71 2.52
87 89 0.623723 AGGCAATCGGGGCTAAGAAA 59.376 50.000 0.00 0.00 42.54 2.52
110 112 2.176792 CTTTGGCGCGGAAAGAGC 59.823 61.111 20.34 0.00 45.31 4.09
117 119 2.890371 GCGGAAAGAGCGGTAGGA 59.110 61.111 0.00 0.00 0.00 2.94
131 133 2.749466 CGGTAGGATTGTGAATGCCCAT 60.749 50.000 0.00 0.00 0.00 4.00
132 134 2.624838 GGTAGGATTGTGAATGCCCATG 59.375 50.000 0.00 0.00 0.00 3.66
141 143 1.572085 GAATGCCCATGATCCGAGCG 61.572 60.000 0.00 0.00 0.00 5.03
153 155 1.222387 CCGAGCGGGGTTTTGGATA 59.778 57.895 0.00 0.00 0.00 2.59
155 157 0.814010 CGAGCGGGGTTTTGGATAGG 60.814 60.000 0.00 0.00 0.00 2.57
161 163 2.031870 GGGGTTTTGGATAGGACATGC 58.968 52.381 0.00 0.00 0.00 4.06
162 164 2.358195 GGGGTTTTGGATAGGACATGCT 60.358 50.000 0.00 0.00 0.00 3.79
179 181 0.737715 GCTGTGTCGGAGTCCATCAC 60.738 60.000 20.30 20.30 0.00 3.06
181 183 1.153823 GTGTCGGAGTCCATCACGG 60.154 63.158 10.49 0.00 0.00 4.94
182 184 2.202756 GTCGGAGTCCATCACGGC 60.203 66.667 10.49 0.00 33.14 5.68
189 191 2.285368 TCCATCACGGCTCCCCTT 60.285 61.111 0.00 0.00 33.14 3.95
203 205 2.350458 CCCTTGATTTGGTGCCGGG 61.350 63.158 2.18 0.00 0.00 5.73
215 217 3.521796 GCCGGGCTGCAGGATTTC 61.522 66.667 17.12 0.00 0.00 2.17
216 218 3.204827 CCGGGCTGCAGGATTTCG 61.205 66.667 17.12 0.00 0.00 3.46
245 247 2.649531 ACCGGTCCAACTCAATTTGA 57.350 45.000 0.00 0.00 0.00 2.69
251 253 3.193479 GGTCCAACTCAATTTGATGACCC 59.807 47.826 17.89 8.22 0.00 4.46
252 254 3.081061 TCCAACTCAATTTGATGACCCG 58.919 45.455 0.00 0.00 0.00 5.28
253 255 2.415893 CCAACTCAATTTGATGACCCGC 60.416 50.000 0.00 0.00 0.00 6.13
254 256 1.086696 ACTCAATTTGATGACCCGCG 58.913 50.000 0.00 0.00 0.00 6.46
255 257 1.086696 CTCAATTTGATGACCCGCGT 58.913 50.000 4.92 0.00 0.00 6.01
256 258 1.062587 CTCAATTTGATGACCCGCGTC 59.937 52.381 4.92 0.00 39.66 5.19
260 262 1.011968 TTTGATGACCCGCGTCGAAG 61.012 55.000 4.92 0.00 42.37 3.79
297 299 2.099098 GACCGTTTGGCCCAGATATTTG 59.901 50.000 0.00 0.00 39.70 2.32
301 303 0.257328 TTGGCCCAGATATTTGCGGA 59.743 50.000 0.00 0.00 0.00 5.54
316 318 6.651755 ATTTGCGGACATTTTGATGAAATC 57.348 33.333 0.00 0.00 45.83 2.17
329 331 6.866010 TTGATGAAATCCGTTGGAGATATG 57.134 37.500 0.00 0.00 44.73 1.78
331 333 6.356556 TGATGAAATCCGTTGGAGATATGTT 58.643 36.000 0.00 0.00 44.73 2.71
332 334 6.483307 TGATGAAATCCGTTGGAGATATGTTC 59.517 38.462 0.00 0.00 44.73 3.18
333 335 5.123227 TGAAATCCGTTGGAGATATGTTCC 58.877 41.667 0.00 0.00 34.05 3.62
334 336 4.771114 AATCCGTTGGAGATATGTTCCA 57.229 40.909 2.14 2.14 42.81 3.53
345 347 8.506168 TGGAGATATGTTCCAAACAGTTTATC 57.494 34.615 0.00 0.00 45.95 1.75
346 348 8.328758 TGGAGATATGTTCCAAACAGTTTATCT 58.671 33.333 11.45 11.45 45.95 1.98
378 380 1.421485 CAATGCGTCGCCTCAACTC 59.579 57.895 15.88 0.00 0.00 3.01
425 427 0.107459 GTGTCAGGAAGGGATGCCTC 60.107 60.000 6.10 0.00 30.41 4.70
426 428 1.144936 GTCAGGAAGGGATGCCTCG 59.855 63.158 6.10 0.00 30.41 4.63
427 429 2.203126 CAGGAAGGGATGCCTCGC 60.203 66.667 6.10 1.41 30.41 5.03
428 430 2.688666 AGGAAGGGATGCCTCGCA 60.689 61.111 6.10 0.00 44.86 5.10
429 431 2.203126 GGAAGGGATGCCTCGCAG 60.203 66.667 6.10 0.00 43.65 5.18
430 432 2.586792 GAAGGGATGCCTCGCAGT 59.413 61.111 6.10 0.00 43.65 4.40
431 433 1.817099 GAAGGGATGCCTCGCAGTG 60.817 63.158 6.10 0.00 43.65 3.66
432 434 2.527951 GAAGGGATGCCTCGCAGTGT 62.528 60.000 6.10 0.00 43.65 3.55
474 476 0.526211 GCGGGTGCTTAAGGGAAAAG 59.474 55.000 4.29 0.00 38.39 2.27
483 485 4.288626 TGCTTAAGGGAAAAGGCTAGAGAA 59.711 41.667 4.29 0.00 0.00 2.87
527 529 1.300620 CAGCCCGTCGTTTGTCTCA 60.301 57.895 0.00 0.00 0.00 3.27
536 538 2.094894 GTCGTTTGTCTCATGGCTGATG 59.905 50.000 0.00 0.00 0.00 3.07
538 540 1.089112 TTTGTCTCATGGCTGATGCG 58.911 50.000 0.00 0.00 40.82 4.73
561 563 4.821805 GTGTGTGAATGAGGAAGAAAAGGA 59.178 41.667 0.00 0.00 0.00 3.36
562 564 5.474876 GTGTGTGAATGAGGAAGAAAAGGAT 59.525 40.000 0.00 0.00 0.00 3.24
563 565 5.474532 TGTGTGAATGAGGAAGAAAAGGATG 59.525 40.000 0.00 0.00 0.00 3.51
564 566 5.012239 TGTGAATGAGGAAGAAAAGGATGG 58.988 41.667 0.00 0.00 0.00 3.51
565 567 5.222109 TGTGAATGAGGAAGAAAAGGATGGA 60.222 40.000 0.00 0.00 0.00 3.41
574 1115 9.114952 GAGGAAGAAAAGGATGGATAAAGTAAG 57.885 37.037 0.00 0.00 0.00 2.34
633 1174 6.036517 GCTGCTTCCGTTGGATGATATTATAG 59.963 42.308 3.15 0.00 0.00 1.31
639 1180 7.676004 TCCGTTGGATGATATTATAGAAAGCA 58.324 34.615 0.00 0.00 0.00 3.91
667 1208 5.585820 TTCGTACATACAAGCCTACATGA 57.414 39.130 0.00 0.00 0.00 3.07
689 1230 1.270147 GGGCATGAGACCACCGTATAC 60.270 57.143 0.00 0.00 45.05 1.47
691 1232 2.545952 GGCATGAGACCACCGTATACTG 60.546 54.545 0.00 0.00 0.00 2.74
715 1256 2.242043 CTTCCAGTGTTCATGCCCTTT 58.758 47.619 0.00 0.00 0.00 3.11
834 1375 4.470602 CCCCAAGATTATTTACCCAGGAC 58.529 47.826 0.00 0.00 0.00 3.85
837 1378 5.377478 CCAAGATTATTTACCCAGGACTCC 58.623 45.833 0.00 0.00 0.00 3.85
898 1441 1.335872 CCAGAATTTGGCGTTCACACC 60.336 52.381 1.00 0.00 40.87 4.16
925 1468 3.434179 ACCCAAGGCCACCAACCA 61.434 61.111 5.01 0.00 0.00 3.67
1023 1566 6.407613 TCTATATATCCCTTTTCAACCCCCT 58.592 40.000 0.00 0.00 0.00 4.79
1024 1567 3.973472 ATATCCCTTTTCAACCCCCTC 57.027 47.619 0.00 0.00 0.00 4.30
1025 1568 0.710588 ATCCCTTTTCAACCCCCTCC 59.289 55.000 0.00 0.00 0.00 4.30
1026 1569 0.404346 TCCCTTTTCAACCCCCTCCT 60.404 55.000 0.00 0.00 0.00 3.69
1214 1773 2.234908 CAAGAAGGTCATCCTCTTCGGT 59.765 50.000 0.00 0.00 44.35 4.69
1272 1831 2.800544 CCTTCACCAGTACAAACAGTCG 59.199 50.000 0.00 0.00 0.00 4.18
1307 1870 0.878961 ACGAAGTGAGCGTTTGACCC 60.879 55.000 0.00 0.00 42.51 4.46
1320 1883 2.745821 GTTTGACCCCTTGTAACCGATC 59.254 50.000 0.00 0.00 0.00 3.69
1369 1932 5.982890 TGGATCCAAGATTGACTTTTTCC 57.017 39.130 13.46 0.00 36.61 3.13
1385 1948 5.582665 ACTTTTTCCTTCTCGCTTATAGCTG 59.417 40.000 0.00 0.00 39.60 4.24
1451 2014 0.981277 TCCCCTGTTCCTCCGGAATC 60.981 60.000 5.23 0.00 44.04 2.52
1458 2021 4.503296 CCTGTTCCTCCGGAATCGATTTAT 60.503 45.833 12.81 0.00 44.04 1.40
1462 2025 6.376018 TGTTCCTCCGGAATCGATTTATTTTT 59.624 34.615 12.81 0.00 44.04 1.94
1506 2071 1.067565 GCTTAACTGCCAGCTTTTCCC 60.068 52.381 0.00 0.00 32.87 3.97
1602 2168 3.081993 GCGAGTGCTCTAAACCGC 58.918 61.111 4.22 4.22 38.39 5.68
1625 2191 4.236935 CTGATTTGACGGGATTTTTGGTG 58.763 43.478 0.00 0.00 0.00 4.17
1732 2298 4.473477 ACTTCACTAATCACTACCCTGC 57.527 45.455 0.00 0.00 0.00 4.85
1746 2312 2.180017 CTGCGGGCAAATCAGCAC 59.820 61.111 0.00 0.00 35.59 4.40
1800 2415 5.003804 TCTGTTGCTCCTTTATCCTGTTTC 58.996 41.667 0.00 0.00 0.00 2.78
1827 2515 4.244862 ACCATGGCAAATCGAATGTTTTC 58.755 39.130 13.04 0.00 0.00 2.29
1828 2516 3.618150 CCATGGCAAATCGAATGTTTTCC 59.382 43.478 0.00 0.00 0.00 3.13
1840 2528 6.459066 TCGAATGTTTTCCATGGCAATTTTA 58.541 32.000 6.96 0.00 32.82 1.52
1841 2529 6.589523 TCGAATGTTTTCCATGGCAATTTTAG 59.410 34.615 6.96 0.00 32.82 1.85
1842 2530 6.368516 CGAATGTTTTCCATGGCAATTTTAGT 59.631 34.615 6.96 0.00 32.82 2.24
1844 2532 6.857777 TGTTTTCCATGGCAATTTTAGTTG 57.142 33.333 6.96 0.00 0.00 3.16
1845 2533 6.586344 TGTTTTCCATGGCAATTTTAGTTGA 58.414 32.000 6.96 0.00 0.00 3.18
1846 2534 6.481644 TGTTTTCCATGGCAATTTTAGTTGAC 59.518 34.615 6.96 0.00 37.63 3.18
1919 2607 3.761752 ACAAACTATGGGTGGATTTTCCG 59.238 43.478 0.00 0.00 40.17 4.30
1929 2617 2.161609 GTGGATTTTCCGTGCTTACCAG 59.838 50.000 0.00 0.00 40.17 4.00
2014 2703 5.687166 ATCCTGAACGTTTGGGACTTATA 57.313 39.130 20.26 3.51 0.00 0.98
2017 2706 4.323257 CCTGAACGTTTGGGACTTATAGGT 60.323 45.833 0.46 0.00 0.00 3.08
2021 2710 3.184541 CGTTTGGGACTTATAGGTGTCG 58.815 50.000 0.00 0.00 34.31 4.35
2048 2737 6.488006 AGAAAAAGCACTCATATTGTGTCTGT 59.512 34.615 7.26 0.00 37.70 3.41
2050 2739 7.744087 AAAAGCACTCATATTGTGTCTGTTA 57.256 32.000 7.26 0.00 37.70 2.41
2276 2966 8.328014 TGGCCACATGAAAGCATATATTAGATA 58.672 33.333 0.00 0.00 32.27 1.98
2338 3028 2.916269 TCCCTGGTACCATTGAATGACA 59.084 45.455 16.75 0.00 0.00 3.58
2349 3039 7.104043 ACCATTGAATGACAGGTTCATATTG 57.896 36.000 6.76 0.00 44.86 1.90
2350 3040 6.664816 ACCATTGAATGACAGGTTCATATTGT 59.335 34.615 6.76 0.00 44.86 2.71
2351 3041 7.178983 ACCATTGAATGACAGGTTCATATTGTT 59.821 33.333 6.76 0.00 44.86 2.83
2352 3042 7.490079 CCATTGAATGACAGGTTCATATTGTTG 59.510 37.037 6.76 0.00 44.86 3.33
2353 3043 5.953183 TGAATGACAGGTTCATATTGTTGC 58.047 37.500 0.00 0.00 44.86 4.17
2355 3045 5.571784 ATGACAGGTTCATATTGTTGCAG 57.428 39.130 0.00 0.00 43.70 4.41
2356 3046 4.650734 TGACAGGTTCATATTGTTGCAGA 58.349 39.130 0.00 0.00 0.00 4.26
2357 3047 5.069318 TGACAGGTTCATATTGTTGCAGAA 58.931 37.500 0.00 0.00 0.00 3.02
2358 3048 5.534278 TGACAGGTTCATATTGTTGCAGAAA 59.466 36.000 0.00 0.00 0.00 2.52
2359 3049 6.209192 TGACAGGTTCATATTGTTGCAGAAAT 59.791 34.615 2.05 2.05 0.00 2.17
2360 3050 7.392953 TGACAGGTTCATATTGTTGCAGAAATA 59.607 33.333 5.83 5.83 0.00 1.40
2361 3051 8.297470 ACAGGTTCATATTGTTGCAGAAATAT 57.703 30.769 9.15 9.15 30.74 1.28
2362 3052 8.752187 ACAGGTTCATATTGTTGCAGAAATATT 58.248 29.630 11.34 0.00 28.65 1.28
2363 3053 9.590451 CAGGTTCATATTGTTGCAGAAATATTT 57.410 29.630 0.00 0.00 28.65 1.40
2366 3056 9.693157 GTTCATATTGTTGCAGAAATATTTTGC 57.307 29.630 19.68 19.68 38.30 3.68
2367 3057 8.999220 TCATATTGTTGCAGAAATATTTTGCA 57.001 26.923 22.79 22.79 45.28 4.08
2377 3067 9.433153 TGCAGAAATATTTTGCAATACATTTCA 57.567 25.926 25.42 10.92 44.13 2.69
2526 3216 9.485206 AGCATAATAGAATGAAAAATGGCATTC 57.515 29.630 14.04 2.52 46.64 2.67
2534 3224 6.913873 ATGAAAAATGGCATTCATAACTGC 57.086 33.333 14.04 0.00 42.77 4.40
2535 3225 5.791666 TGAAAAATGGCATTCATAACTGCA 58.208 33.333 14.04 1.41 40.18 4.41
2536 3226 6.408035 TGAAAAATGGCATTCATAACTGCAT 58.592 32.000 14.04 0.00 40.18 3.96
2537 3227 7.554211 TGAAAAATGGCATTCATAACTGCATA 58.446 30.769 14.04 0.00 40.18 3.14
2538 3228 8.205512 TGAAAAATGGCATTCATAACTGCATAT 58.794 29.630 14.04 0.00 40.18 1.78
2539 3229 8.967664 AAAAATGGCATTCATAACTGCATATT 57.032 26.923 14.04 0.00 40.18 1.28
2540 3230 7.956420 AAATGGCATTCATAACTGCATATTG 57.044 32.000 14.04 0.00 40.18 1.90
2541 3231 6.904463 ATGGCATTCATAACTGCATATTGA 57.096 33.333 0.00 0.00 40.18 2.57
2542 3232 6.321848 TGGCATTCATAACTGCATATTGAG 57.678 37.500 0.00 0.00 40.18 3.02
2543 3233 5.242171 TGGCATTCATAACTGCATATTGAGG 59.758 40.000 0.00 0.00 40.18 3.86
2544 3234 5.242393 GGCATTCATAACTGCATATTGAGGT 59.758 40.000 0.00 0.00 40.18 3.85
2545 3235 6.147581 GCATTCATAACTGCATATTGAGGTG 58.852 40.000 0.00 0.00 38.28 4.00
2546 3236 6.675026 CATTCATAACTGCATATTGAGGTGG 58.325 40.000 0.00 0.00 0.00 4.61
2547 3237 4.717877 TCATAACTGCATATTGAGGTGGG 58.282 43.478 0.00 0.00 0.00 4.61
2548 3238 1.767759 AACTGCATATTGAGGTGGGC 58.232 50.000 0.00 0.00 0.00 5.36
2549 3239 0.106519 ACTGCATATTGAGGTGGGCC 60.107 55.000 0.00 0.00 0.00 5.80
2559 3249 3.131850 AGGTGGGCCTTTTTCTGTG 57.868 52.632 4.53 0.00 44.18 3.66
2560 3250 1.115326 AGGTGGGCCTTTTTCTGTGC 61.115 55.000 4.53 0.00 44.18 4.57
2561 3251 1.398958 GGTGGGCCTTTTTCTGTGCA 61.399 55.000 4.53 0.00 0.00 4.57
2562 3252 0.681175 GTGGGCCTTTTTCTGTGCAT 59.319 50.000 4.53 0.00 0.00 3.96
2563 3253 0.680618 TGGGCCTTTTTCTGTGCATG 59.319 50.000 4.53 0.00 0.00 4.06
2564 3254 0.037046 GGGCCTTTTTCTGTGCATGG 60.037 55.000 0.84 0.00 0.00 3.66
2565 3255 0.681175 GGCCTTTTTCTGTGCATGGT 59.319 50.000 0.00 0.00 0.00 3.55
2566 3256 1.070601 GGCCTTTTTCTGTGCATGGTT 59.929 47.619 0.00 0.00 0.00 3.67
2567 3257 2.137523 GCCTTTTTCTGTGCATGGTTG 58.862 47.619 0.00 0.00 0.00 3.77
2581 3271 4.611310 CATGGTTGCATGTAGAAGTGAG 57.389 45.455 0.00 0.00 0.00 3.51
2582 3272 2.426522 TGGTTGCATGTAGAAGTGAGC 58.573 47.619 0.00 0.00 0.00 4.26
2583 3273 2.224499 TGGTTGCATGTAGAAGTGAGCA 60.224 45.455 0.00 0.00 0.00 4.26
2584 3274 3.012518 GGTTGCATGTAGAAGTGAGCAT 58.987 45.455 0.00 0.00 0.00 3.79
2585 3275 3.441572 GGTTGCATGTAGAAGTGAGCATT 59.558 43.478 0.00 0.00 0.00 3.56
2586 3276 4.082571 GGTTGCATGTAGAAGTGAGCATTT 60.083 41.667 0.00 0.00 0.00 2.32
2587 3277 4.952262 TGCATGTAGAAGTGAGCATTTC 57.048 40.909 0.00 0.00 0.00 2.17
2588 3278 4.582869 TGCATGTAGAAGTGAGCATTTCT 58.417 39.130 12.01 12.01 40.01 2.52
2589 3279 5.005740 TGCATGTAGAAGTGAGCATTTCTT 58.994 37.500 12.48 0.00 38.21 2.52
2590 3280 5.474532 TGCATGTAGAAGTGAGCATTTCTTT 59.525 36.000 12.48 0.00 38.21 2.52
2591 3281 6.026513 GCATGTAGAAGTGAGCATTTCTTTC 58.973 40.000 12.48 8.03 38.21 2.62
2592 3282 6.348786 GCATGTAGAAGTGAGCATTTCTTTCA 60.349 38.462 12.48 12.15 38.21 2.69
2593 3283 7.627939 GCATGTAGAAGTGAGCATTTCTTTCAT 60.628 37.037 12.48 13.44 38.21 2.57
2594 3284 7.137490 TGTAGAAGTGAGCATTTCTTTCATG 57.863 36.000 12.48 0.00 38.21 3.07
2595 3285 6.936335 TGTAGAAGTGAGCATTTCTTTCATGA 59.064 34.615 12.48 0.00 38.21 3.07
2596 3286 7.609146 TGTAGAAGTGAGCATTTCTTTCATGAT 59.391 33.333 12.48 0.00 38.21 2.45
2597 3287 6.853720 AGAAGTGAGCATTTCTTTCATGATG 58.146 36.000 0.00 0.00 34.30 3.07
2598 3288 6.657966 AGAAGTGAGCATTTCTTTCATGATGA 59.342 34.615 0.00 0.00 34.30 2.92
2599 3289 6.438259 AGTGAGCATTTCTTTCATGATGAG 57.562 37.500 0.00 0.00 0.00 2.90
2600 3290 5.357314 AGTGAGCATTTCTTTCATGATGAGG 59.643 40.000 0.00 0.00 0.00 3.86
2601 3291 5.125097 GTGAGCATTTCTTTCATGATGAGGT 59.875 40.000 0.00 0.00 0.00 3.85
2602 3292 5.124936 TGAGCATTTCTTTCATGATGAGGTG 59.875 40.000 0.00 3.08 0.00 4.00
2603 3293 4.401519 AGCATTTCTTTCATGATGAGGTGG 59.598 41.667 0.00 0.00 0.00 4.61
2604 3294 4.679662 CATTTCTTTCATGATGAGGTGGC 58.320 43.478 0.00 0.00 0.00 5.01
2605 3295 3.438216 TTCTTTCATGATGAGGTGGCA 57.562 42.857 0.00 0.00 0.00 4.92
2606 3296 3.657398 TCTTTCATGATGAGGTGGCAT 57.343 42.857 0.00 0.00 0.00 4.40
2607 3297 3.284617 TCTTTCATGATGAGGTGGCATG 58.715 45.455 0.00 0.00 40.46 4.06
2608 3298 1.395635 TTCATGATGAGGTGGCATGC 58.604 50.000 9.90 9.90 39.30 4.06
2609 3299 0.549469 TCATGATGAGGTGGCATGCT 59.451 50.000 18.92 0.00 39.30 3.79
2610 3300 1.064240 TCATGATGAGGTGGCATGCTT 60.064 47.619 18.92 0.65 39.30 3.91
2611 3301 1.067060 CATGATGAGGTGGCATGCTTG 59.933 52.381 18.92 0.00 33.81 4.01
2612 3302 0.681887 TGATGAGGTGGCATGCTTGG 60.682 55.000 18.92 0.00 0.00 3.61
2613 3303 0.394762 GATGAGGTGGCATGCTTGGA 60.395 55.000 18.92 0.00 0.00 3.53
2614 3304 0.260816 ATGAGGTGGCATGCTTGGAT 59.739 50.000 18.92 0.00 0.00 3.41
2615 3305 0.681887 TGAGGTGGCATGCTTGGATG 60.682 55.000 18.92 0.00 0.00 3.51
2616 3306 0.682209 GAGGTGGCATGCTTGGATGT 60.682 55.000 18.92 0.00 0.00 3.06
2617 3307 0.251922 AGGTGGCATGCTTGGATGTT 60.252 50.000 18.92 0.00 0.00 2.71
2618 3308 0.108520 GGTGGCATGCTTGGATGTTG 60.109 55.000 18.92 0.00 0.00 3.33
2619 3309 0.889994 GTGGCATGCTTGGATGTTGA 59.110 50.000 18.92 0.00 0.00 3.18
2620 3310 1.135199 GTGGCATGCTTGGATGTTGAG 60.135 52.381 18.92 0.00 0.00 3.02
2621 3311 1.272037 TGGCATGCTTGGATGTTGAGA 60.272 47.619 18.92 0.00 0.00 3.27
2622 3312 1.404391 GGCATGCTTGGATGTTGAGAG 59.596 52.381 18.92 0.00 0.00 3.20
2623 3313 2.362736 GCATGCTTGGATGTTGAGAGA 58.637 47.619 11.37 0.00 0.00 3.10
2624 3314 2.751259 GCATGCTTGGATGTTGAGAGAA 59.249 45.455 11.37 0.00 0.00 2.87
2625 3315 3.192001 GCATGCTTGGATGTTGAGAGAAA 59.808 43.478 11.37 0.00 0.00 2.52
2626 3316 4.142227 GCATGCTTGGATGTTGAGAGAAAT 60.142 41.667 11.37 0.00 0.00 2.17
2627 3317 5.066893 GCATGCTTGGATGTTGAGAGAAATA 59.933 40.000 11.37 0.00 0.00 1.40
2628 3318 6.726230 CATGCTTGGATGTTGAGAGAAATAG 58.274 40.000 0.00 0.00 0.00 1.73
2629 3319 5.188434 TGCTTGGATGTTGAGAGAAATAGG 58.812 41.667 0.00 0.00 0.00 2.57
2630 3320 5.189180 GCTTGGATGTTGAGAGAAATAGGT 58.811 41.667 0.00 0.00 0.00 3.08
2631 3321 5.649831 GCTTGGATGTTGAGAGAAATAGGTT 59.350 40.000 0.00 0.00 0.00 3.50
2632 3322 6.823689 GCTTGGATGTTGAGAGAAATAGGTTA 59.176 38.462 0.00 0.00 0.00 2.85
2633 3323 7.011857 GCTTGGATGTTGAGAGAAATAGGTTAG 59.988 40.741 0.00 0.00 0.00 2.34
2634 3324 7.496346 TGGATGTTGAGAGAAATAGGTTAGT 57.504 36.000 0.00 0.00 0.00 2.24
2635 3325 7.331026 TGGATGTTGAGAGAAATAGGTTAGTG 58.669 38.462 0.00 0.00 0.00 2.74
2636 3326 6.763610 GGATGTTGAGAGAAATAGGTTAGTGG 59.236 42.308 0.00 0.00 0.00 4.00
2637 3327 6.049955 TGTTGAGAGAAATAGGTTAGTGGG 57.950 41.667 0.00 0.00 0.00 4.61
2638 3328 5.045869 TGTTGAGAGAAATAGGTTAGTGGGG 60.046 44.000 0.00 0.00 0.00 4.96
2639 3329 4.037927 TGAGAGAAATAGGTTAGTGGGGG 58.962 47.826 0.00 0.00 0.00 5.40
2640 3330 2.778270 AGAGAAATAGGTTAGTGGGGGC 59.222 50.000 0.00 0.00 0.00 5.80
2641 3331 2.778270 GAGAAATAGGTTAGTGGGGGCT 59.222 50.000 0.00 0.00 0.00 5.19
2642 3332 3.971971 GAGAAATAGGTTAGTGGGGGCTA 59.028 47.826 0.00 0.00 0.00 3.93
2643 3333 3.974642 AGAAATAGGTTAGTGGGGGCTAG 59.025 47.826 0.00 0.00 0.00 3.42
2644 3334 2.417719 ATAGGTTAGTGGGGGCTAGG 57.582 55.000 0.00 0.00 0.00 3.02
2645 3335 1.021275 TAGGTTAGTGGGGGCTAGGT 58.979 55.000 0.00 0.00 0.00 3.08
2646 3336 1.021275 AGGTTAGTGGGGGCTAGGTA 58.979 55.000 0.00 0.00 0.00 3.08
2647 3337 1.584105 AGGTTAGTGGGGGCTAGGTAT 59.416 52.381 0.00 0.00 0.00 2.73
2648 3338 2.021341 AGGTTAGTGGGGGCTAGGTATT 60.021 50.000 0.00 0.00 0.00 1.89
2649 3339 2.781757 GGTTAGTGGGGGCTAGGTATTT 59.218 50.000 0.00 0.00 0.00 1.40
2650 3340 3.975982 GGTTAGTGGGGGCTAGGTATTTA 59.024 47.826 0.00 0.00 0.00 1.40
2651 3341 4.041321 GGTTAGTGGGGGCTAGGTATTTAG 59.959 50.000 0.00 0.00 0.00 1.85
2652 3342 3.719368 AGTGGGGGCTAGGTATTTAGA 57.281 47.619 0.00 0.00 0.00 2.10
2653 3343 4.229718 AGTGGGGGCTAGGTATTTAGAT 57.770 45.455 0.00 0.00 0.00 1.98
2654 3344 5.364620 AGTGGGGGCTAGGTATTTAGATA 57.635 43.478 0.00 0.00 0.00 1.98
2655 3345 5.928656 AGTGGGGGCTAGGTATTTAGATAT 58.071 41.667 0.00 0.00 0.00 1.63
2656 3346 7.065018 AGTGGGGGCTAGGTATTTAGATATA 57.935 40.000 0.00 0.00 0.00 0.86
2657 3347 7.133483 AGTGGGGGCTAGGTATTTAGATATAG 58.867 42.308 0.00 0.00 0.00 1.31
2658 3348 7.035320 AGTGGGGGCTAGGTATTTAGATATAGA 60.035 40.741 0.00 0.00 0.00 1.98
2659 3349 7.622479 GTGGGGGCTAGGTATTTAGATATAGAA 59.378 40.741 0.00 0.00 0.00 2.10
2660 3350 7.844779 TGGGGGCTAGGTATTTAGATATAGAAG 59.155 40.741 0.00 0.00 0.00 2.85
2673 3363 6.149129 AGATATAGAAGATGTGTGAACGCA 57.851 37.500 0.00 0.00 40.98 5.24
2861 3559 0.179081 GGGCGAAGACATACCCAGAC 60.179 60.000 0.00 0.00 37.00 3.51
3143 3841 2.869801 TGTAGTTTGAACTTGTCTGCCG 59.130 45.455 1.20 0.00 40.37 5.69
3148 3846 3.462483 TTGAACTTGTCTGCCGAACTA 57.538 42.857 0.00 0.00 0.00 2.24
3168 3866 7.762615 CGAACTACTAGTGGGAATAAATTGTCA 59.237 37.037 11.30 0.00 0.00 3.58
3223 3921 3.303395 GCAAGTGACTTCAGAGTTTTCCG 60.303 47.826 0.00 0.00 35.88 4.30
3240 3938 2.379972 TCCGGTCAAATTGTTGGTTGT 58.620 42.857 0.00 0.00 35.29 3.32
3385 6709 5.312895 TGGTGCAGATTACTGTTTATGTGT 58.687 37.500 0.00 0.00 45.04 3.72
3416 6740 9.840427 GTGTTATTTAGATTTTGCTGCTTAAGA 57.160 29.630 6.67 0.00 0.00 2.10
3541 6878 2.092914 AGCTATTTTACAGGCGCCTCTT 60.093 45.455 30.29 19.66 0.00 2.85
3542 6879 2.288186 GCTATTTTACAGGCGCCTCTTC 59.712 50.000 30.29 0.00 0.00 2.87
3543 6880 2.789409 ATTTTACAGGCGCCTCTTCT 57.211 45.000 30.29 11.97 0.00 2.85
3556 6893 2.235898 GCCTCTTCTCTTCACCAGATGT 59.764 50.000 0.00 0.00 0.00 3.06
3666 7071 1.093159 GCTTCTTGATCCAGCACCAG 58.907 55.000 0.00 0.00 33.45 4.00
3671 7076 2.066700 TTGATCCAGCACCAGCACCA 62.067 55.000 0.00 0.00 45.49 4.17
3674 7079 3.289834 CCAGCACCAGCACCACAC 61.290 66.667 0.00 0.00 45.49 3.82
3675 7080 2.516695 CAGCACCAGCACCACACA 60.517 61.111 0.00 0.00 45.49 3.72
3676 7081 2.516930 AGCACCAGCACCACACAC 60.517 61.111 0.00 0.00 45.49 3.82
3677 7082 2.828095 GCACCAGCACCACACACA 60.828 61.111 0.00 0.00 41.58 3.72
3678 7083 2.195567 GCACCAGCACCACACACAT 61.196 57.895 0.00 0.00 41.58 3.21
3679 7084 1.737355 GCACCAGCACCACACACATT 61.737 55.000 0.00 0.00 41.58 2.71
3698 7103 2.631418 TCACGTTCATCTCGACCTTC 57.369 50.000 0.00 0.00 0.00 3.46
3745 7150 2.364324 CGATACGGGGGATCTTCTTCAA 59.636 50.000 0.00 0.00 0.00 2.69
3754 7159 3.416156 GGATCTTCTTCAACTTGCCACT 58.584 45.455 0.00 0.00 0.00 4.00
3920 7325 2.016393 GATCCCGAGCGATGGTGTCA 62.016 60.000 0.00 0.00 0.00 3.58
4021 7426 3.305608 GCAAACCCAACATCCTGAAAGAG 60.306 47.826 0.00 0.00 34.07 2.85
4045 7450 5.886960 AGAGCACATTGAATAGGAAACAC 57.113 39.130 0.00 0.00 0.00 3.32
4124 7532 6.092670 TGAAACATTGCTGCTTCTCTATGTAC 59.907 38.462 0.00 0.00 30.40 2.90
4125 7533 5.350504 ACATTGCTGCTTCTCTATGTACT 57.649 39.130 0.00 0.00 29.50 2.73
4126 7534 6.471233 ACATTGCTGCTTCTCTATGTACTA 57.529 37.500 0.00 0.00 29.50 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 2.338500 GAGAACCCTTCACGATGTGTC 58.662 52.381 0.00 0.00 34.79 3.67
9 10 1.336887 CGAGAACCCTTCACGATGTGT 60.337 52.381 0.00 0.00 44.71 3.72
24 26 1.065764 CGCGATGGATCCACGAGAA 59.934 57.895 29.10 5.41 0.00 2.87
43 45 4.072088 CGCTTGTTCCGTCACCGC 62.072 66.667 0.00 0.00 0.00 5.68
46 48 3.047877 CCCCGCTTGTTCCGTCAC 61.048 66.667 0.00 0.00 0.00 3.67
49 51 2.612095 TTTGTCCCCGCTTGTTCCGT 62.612 55.000 0.00 0.00 0.00 4.69
57 59 1.678970 GATTGCCTTTGTCCCCGCT 60.679 57.895 0.00 0.00 0.00 5.52
59 61 2.406616 CCGATTGCCTTTGTCCCCG 61.407 63.158 0.00 0.00 0.00 5.73
69 71 1.025041 CTTTCTTAGCCCCGATTGCC 58.975 55.000 0.00 0.00 0.00 4.52
70 72 0.382158 GCTTTCTTAGCCCCGATTGC 59.618 55.000 0.00 0.00 44.48 3.56
81 83 1.582610 CGCCAAAGCCCGCTTTCTTA 61.583 55.000 11.66 0.00 43.56 2.10
110 112 1.308998 GGGCATTCACAATCCTACCG 58.691 55.000 0.00 0.00 0.00 4.02
117 119 1.958579 CGGATCATGGGCATTCACAAT 59.041 47.619 0.00 0.00 0.00 2.71
131 133 1.376683 CAAAACCCCGCTCGGATCA 60.377 57.895 10.28 0.00 37.50 2.92
132 134 2.112815 CCAAAACCCCGCTCGGATC 61.113 63.158 10.28 0.00 37.50 3.36
141 143 2.031870 GCATGTCCTATCCAAAACCCC 58.968 52.381 0.00 0.00 0.00 4.95
161 163 0.456824 CGTGATGGACTCCGACACAG 60.457 60.000 18.34 10.85 34.02 3.66
162 164 1.584495 CGTGATGGACTCCGACACA 59.416 57.895 18.34 3.40 34.02 3.72
167 169 2.105128 GAGCCGTGATGGACTCCG 59.895 66.667 0.00 0.00 42.00 4.63
179 181 1.000896 ACCAAATCAAGGGGAGCCG 60.001 57.895 0.00 0.00 0.00 5.52
181 183 1.607801 GGCACCAAATCAAGGGGAGC 61.608 60.000 0.00 0.00 0.00 4.70
182 184 1.315257 CGGCACCAAATCAAGGGGAG 61.315 60.000 0.00 0.00 0.00 4.30
189 191 2.676121 CAGCCCGGCACCAAATCA 60.676 61.111 13.15 0.00 0.00 2.57
203 205 0.659957 GATGTCCGAAATCCTGCAGC 59.340 55.000 8.66 0.00 0.00 5.25
215 217 1.440476 GGACCGGTTAGGATGTCCG 59.560 63.158 9.42 0.00 45.00 4.79
216 218 0.906775 TTGGACCGGTTAGGATGTCC 59.093 55.000 9.42 2.53 45.99 4.02
245 247 4.814294 GCCTTCGACGCGGGTCAT 62.814 66.667 29.06 0.00 43.61 3.06
251 253 0.725117 ATTTTTAGGCCTTCGACGCG 59.275 50.000 12.58 3.53 0.00 6.01
252 254 1.467342 ACATTTTTAGGCCTTCGACGC 59.533 47.619 12.58 0.00 0.00 5.19
253 255 2.482721 ACACATTTTTAGGCCTTCGACG 59.517 45.455 12.58 0.00 0.00 5.12
254 256 3.365969 CCACACATTTTTAGGCCTTCGAC 60.366 47.826 12.58 0.00 0.00 4.20
255 257 2.817258 CCACACATTTTTAGGCCTTCGA 59.183 45.455 12.58 0.00 0.00 3.71
256 258 2.817258 TCCACACATTTTTAGGCCTTCG 59.183 45.455 12.58 0.00 0.00 3.79
260 262 1.201414 CGGTCCACACATTTTTAGGCC 59.799 52.381 0.00 0.00 0.00 5.19
297 299 3.108144 CGGATTTCATCAAAATGTCCGC 58.892 45.455 0.00 0.00 40.20 5.54
301 303 5.476599 TCTCCAACGGATTTCATCAAAATGT 59.523 36.000 0.00 0.00 37.70 2.71
332 334 4.638421 TGCCCGAATAGATAAACTGTTTGG 59.362 41.667 15.69 6.15 45.26 3.28
333 335 5.811399 TGCCCGAATAGATAAACTGTTTG 57.189 39.130 15.69 0.00 32.95 2.93
334 336 5.299279 CCATGCCCGAATAGATAAACTGTTT 59.701 40.000 10.98 10.98 30.33 2.83
335 337 4.821805 CCATGCCCGAATAGATAAACTGTT 59.178 41.667 0.00 0.00 32.78 3.16
336 338 4.389374 CCATGCCCGAATAGATAAACTGT 58.611 43.478 0.00 0.00 0.00 3.55
337 339 3.189287 GCCATGCCCGAATAGATAAACTG 59.811 47.826 0.00 0.00 0.00 3.16
338 340 3.412386 GCCATGCCCGAATAGATAAACT 58.588 45.455 0.00 0.00 0.00 2.66
339 341 2.488153 GGCCATGCCCGAATAGATAAAC 59.512 50.000 0.00 0.00 44.06 2.01
340 342 2.790433 GGCCATGCCCGAATAGATAAA 58.210 47.619 0.00 0.00 44.06 1.40
341 343 2.489938 GGCCATGCCCGAATAGATAA 57.510 50.000 0.00 0.00 44.06 1.75
369 371 2.435059 GGAGCACCGAGTTGAGGC 60.435 66.667 0.00 0.00 0.00 4.70
425 427 2.363807 GCAGCACTAGTACACTGCG 58.636 57.895 21.78 8.54 45.23 5.18
427 429 2.001812 CAGGCAGCACTAGTACACTG 57.998 55.000 12.96 12.96 0.00 3.66
428 430 0.247736 GCAGGCAGCACTAGTACACT 59.752 55.000 0.00 0.00 44.79 3.55
429 431 2.755929 GCAGGCAGCACTAGTACAC 58.244 57.895 0.00 0.00 44.79 2.90
505 507 2.972505 CAAACGACGGGCTGCTGT 60.973 61.111 0.00 0.00 0.00 4.40
506 508 2.954753 GACAAACGACGGGCTGCTG 61.955 63.158 0.00 0.00 0.00 4.41
515 517 1.795768 TCAGCCATGAGACAAACGAC 58.204 50.000 0.00 0.00 0.00 4.34
527 529 0.606130 TTCACACACGCATCAGCCAT 60.606 50.000 0.00 0.00 37.52 4.40
536 538 1.795768 TCTTCCTCATTCACACACGC 58.204 50.000 0.00 0.00 0.00 5.34
538 540 4.821805 TCCTTTTCTTCCTCATTCACACAC 59.178 41.667 0.00 0.00 0.00 3.82
561 563 5.542251 GCTCCCTCTCTCTTACTTTATCCAT 59.458 44.000 0.00 0.00 0.00 3.41
562 564 4.896482 GCTCCCTCTCTCTTACTTTATCCA 59.104 45.833 0.00 0.00 0.00 3.41
563 565 4.896482 TGCTCCCTCTCTCTTACTTTATCC 59.104 45.833 0.00 0.00 0.00 2.59
564 566 6.127310 TGTTGCTCCCTCTCTCTTACTTTATC 60.127 42.308 0.00 0.00 0.00 1.75
565 567 5.721960 TGTTGCTCCCTCTCTCTTACTTTAT 59.278 40.000 0.00 0.00 0.00 1.40
574 1115 0.179936 CCCATGTTGCTCCCTCTCTC 59.820 60.000 0.00 0.00 0.00 3.20
648 1189 5.057149 CCCTTCATGTAGGCTTGTATGTAC 58.943 45.833 12.74 0.00 33.73 2.90
649 1190 4.444306 GCCCTTCATGTAGGCTTGTATGTA 60.444 45.833 12.74 0.00 43.62 2.29
667 1208 0.907704 TACGGTGGTCTCATGCCCTT 60.908 55.000 0.00 0.00 0.00 3.95
678 1219 2.102588 GGAAGCATCAGTATACGGTGGT 59.897 50.000 2.86 5.12 0.00 4.16
689 1230 2.159421 GCATGAACACTGGAAGCATCAG 60.159 50.000 0.00 0.00 37.60 2.90
691 1232 1.133790 GGCATGAACACTGGAAGCATC 59.866 52.381 0.00 0.00 37.60 3.91
715 1256 4.823157 TCAAAACGTCCGGAGATATTTGA 58.177 39.130 21.49 21.49 32.74 2.69
787 1328 1.553195 CCGACGCACGTCAATCAACA 61.553 55.000 21.66 0.00 44.77 3.33
789 1330 1.006825 CTCCGACGCACGTCAATCAA 61.007 55.000 21.66 2.66 44.77 2.57
790 1331 1.443702 CTCCGACGCACGTCAATCA 60.444 57.895 21.66 2.72 44.77 2.57
791 1332 0.525668 ATCTCCGACGCACGTCAATC 60.526 55.000 21.66 0.00 44.77 2.67
792 1333 0.802222 CATCTCCGACGCACGTCAAT 60.802 55.000 21.66 7.56 44.77 2.57
793 1334 1.443702 CATCTCCGACGCACGTCAA 60.444 57.895 21.66 9.12 44.77 3.18
834 1375 2.096019 GCTCAGCAAGAAAAAGACGGAG 60.096 50.000 0.00 0.00 0.00 4.63
837 1378 2.350197 CCTGCTCAGCAAGAAAAAGACG 60.350 50.000 0.00 0.00 38.41 4.18
925 1468 3.172339 TGATTGGGTTAATTGGCTTGCT 58.828 40.909 0.00 0.00 0.00 3.91
1023 1566 3.706373 GCAGGCGACAGGGAAGGA 61.706 66.667 0.00 0.00 0.00 3.36
1024 1567 4.785453 GGCAGGCGACAGGGAAGG 62.785 72.222 0.00 0.00 0.00 3.46
1025 1568 3.259633 AAGGCAGGCGACAGGGAAG 62.260 63.158 0.00 0.00 0.00 3.46
1026 1569 3.249189 AAGGCAGGCGACAGGGAA 61.249 61.111 0.00 0.00 0.00 3.97
1214 1773 4.329545 GTGAAGGCGCCAGGGACA 62.330 66.667 31.54 17.20 0.00 4.02
1272 1831 5.175126 TCACTTCGTTTTTCTCGATCTGTTC 59.825 40.000 0.00 0.00 37.18 3.18
1307 1870 2.031420 TCGCTATCGATCGGTTACAAGG 60.031 50.000 16.41 0.00 40.21 3.61
1320 1883 0.597637 ACAATTCGGCCTCGCTATCG 60.598 55.000 0.00 0.00 36.13 2.92
1332 1895 2.480419 GGATCCATCCGCTAACAATTCG 59.520 50.000 6.95 0.00 37.19 3.34
1462 2025 5.295787 CCAAATCTTGCAGCTATTACGGTAA 59.704 40.000 2.62 2.62 0.00 2.85
1602 2168 3.258123 ACCAAAAATCCCGTCAAATCAGG 59.742 43.478 0.00 0.00 0.00 3.86
1625 2191 4.784177 ACTAGAGTACTAGACCAAGCTCC 58.216 47.826 10.60 0.00 46.34 4.70
1708 2274 6.403878 GCAGGGTAGTGATTAGTGAAGTAAA 58.596 40.000 0.00 0.00 0.00 2.01
1732 2298 2.153366 AAAAAGTGCTGATTTGCCCG 57.847 45.000 0.00 0.00 0.00 6.13
1800 2415 1.934589 TCGATTTGCCATGGTCTACG 58.065 50.000 14.67 12.90 0.00 3.51
1827 2515 4.925054 CAGTGTCAACTAAAATTGCCATGG 59.075 41.667 7.63 7.63 33.79 3.66
1828 2516 5.771469 TCAGTGTCAACTAAAATTGCCATG 58.229 37.500 0.00 0.00 33.79 3.66
1840 2528 1.059098 TGCCATCCTCAGTGTCAACT 58.941 50.000 0.00 0.00 36.98 3.16
1841 2529 1.808945 CTTGCCATCCTCAGTGTCAAC 59.191 52.381 0.00 0.00 0.00 3.18
1842 2530 1.421268 ACTTGCCATCCTCAGTGTCAA 59.579 47.619 0.00 0.00 0.00 3.18
1844 2532 2.191128 AACTTGCCATCCTCAGTGTC 57.809 50.000 0.00 0.00 0.00 3.67
1845 2533 2.664402 AAACTTGCCATCCTCAGTGT 57.336 45.000 0.00 0.00 0.00 3.55
1846 2534 3.679389 ACTAAACTTGCCATCCTCAGTG 58.321 45.455 0.00 0.00 0.00 3.66
1847 2535 4.074970 CAACTAAACTTGCCATCCTCAGT 58.925 43.478 0.00 0.00 0.00 3.41
1848 2536 3.441572 CCAACTAAACTTGCCATCCTCAG 59.558 47.826 0.00 0.00 0.00 3.35
1849 2537 3.420893 CCAACTAAACTTGCCATCCTCA 58.579 45.455 0.00 0.00 0.00 3.86
1905 2593 0.178975 AAGCACGGAAAATCCACCCA 60.179 50.000 0.00 0.00 35.91 4.51
1929 2617 4.513198 TTGTTACCATGGCAAGTTTAGC 57.487 40.909 13.04 0.00 0.00 3.09
2014 2703 2.872858 GAGTGCTTTTTCTTCGACACCT 59.127 45.455 0.00 0.00 0.00 4.00
2017 2706 6.204688 ACAATATGAGTGCTTTTTCTTCGACA 59.795 34.615 0.00 0.00 0.00 4.35
2021 2710 7.536622 CAGACACAATATGAGTGCTTTTTCTTC 59.463 37.037 8.12 0.00 40.59 2.87
2048 2737 7.308408 GCTGATTGCTGCATTCATAGAAGATAA 60.308 37.037 22.82 0.00 38.66 1.75
2050 2739 5.048643 GCTGATTGCTGCATTCATAGAAGAT 60.049 40.000 22.82 2.13 38.66 2.40
2173 2862 9.229784 CTGCTTTCACAACATGATATAATGAAC 57.770 33.333 7.09 0.00 37.11 3.18
2174 2863 9.176460 TCTGCTTTCACAACATGATATAATGAA 57.824 29.630 7.09 0.00 37.11 2.57
2175 2864 8.735692 TCTGCTTTCACAACATGATATAATGA 57.264 30.769 7.09 0.00 37.11 2.57
2180 2869 9.128404 ACAATATCTGCTTTCACAACATGATAT 57.872 29.630 0.00 0.00 37.11 1.63
2298 2988 6.952358 CCAGGGAGCTACCTTACTATTATACA 59.048 42.308 17.49 0.00 39.34 2.29
2351 3041 9.433153 TGAAATGTATTGCAAAATATTTCTGCA 57.567 25.926 27.32 22.79 44.04 4.41
2500 3190 9.485206 GAATGCCATTTTTCATTCTATTATGCT 57.515 29.630 7.48 0.00 43.02 3.79
2501 3191 9.263538 TGAATGCCATTTTTCATTCTATTATGC 57.736 29.630 13.79 0.00 45.25 3.14
2507 3197 9.806203 CAGTTATGAATGCCATTTTTCATTCTA 57.194 29.630 13.79 4.08 45.25 2.10
2508 3198 7.279313 GCAGTTATGAATGCCATTTTTCATTCT 59.721 33.333 13.79 1.89 45.25 2.40
2509 3199 7.064847 TGCAGTTATGAATGCCATTTTTCATTC 59.935 33.333 7.49 7.73 45.24 2.67
2510 3200 6.879993 TGCAGTTATGAATGCCATTTTTCATT 59.120 30.769 7.49 0.00 41.52 2.57
2511 3201 6.408035 TGCAGTTATGAATGCCATTTTTCAT 58.592 32.000 7.49 3.89 43.22 2.57
2512 3202 5.791666 TGCAGTTATGAATGCCATTTTTCA 58.208 33.333 7.49 0.00 41.85 2.69
2513 3203 6.913873 ATGCAGTTATGAATGCCATTTTTC 57.086 33.333 7.49 0.00 41.85 2.29
2514 3204 8.832521 CAATATGCAGTTATGAATGCCATTTTT 58.167 29.630 7.49 0.00 41.85 1.94
2515 3205 8.205512 TCAATATGCAGTTATGAATGCCATTTT 58.794 29.630 7.49 1.15 41.85 1.82
2516 3206 7.728148 TCAATATGCAGTTATGAATGCCATTT 58.272 30.769 7.49 0.00 41.85 2.32
2517 3207 7.292713 TCAATATGCAGTTATGAATGCCATT 57.707 32.000 7.49 4.54 41.85 3.16
2518 3208 6.071560 CCTCAATATGCAGTTATGAATGCCAT 60.072 38.462 7.49 4.19 41.85 4.40
2519 3209 5.242171 CCTCAATATGCAGTTATGAATGCCA 59.758 40.000 7.49 0.00 41.85 4.92
2520 3210 5.242393 ACCTCAATATGCAGTTATGAATGCC 59.758 40.000 7.49 0.00 41.85 4.40
2521 3211 6.147581 CACCTCAATATGCAGTTATGAATGC 58.852 40.000 2.58 2.58 42.86 3.56
2522 3212 6.294342 CCCACCTCAATATGCAGTTATGAATG 60.294 42.308 0.00 0.00 0.00 2.67
2523 3213 5.771666 CCCACCTCAATATGCAGTTATGAAT 59.228 40.000 0.00 0.00 0.00 2.57
2524 3214 5.132502 CCCACCTCAATATGCAGTTATGAA 58.867 41.667 0.00 0.00 0.00 2.57
2525 3215 4.717877 CCCACCTCAATATGCAGTTATGA 58.282 43.478 0.00 0.00 0.00 2.15
2526 3216 3.254166 GCCCACCTCAATATGCAGTTATG 59.746 47.826 0.00 0.00 0.00 1.90
2527 3217 3.490348 GCCCACCTCAATATGCAGTTAT 58.510 45.455 0.00 0.00 0.00 1.89
2528 3218 2.422803 GGCCCACCTCAATATGCAGTTA 60.423 50.000 0.00 0.00 0.00 2.24
2529 3219 1.686115 GGCCCACCTCAATATGCAGTT 60.686 52.381 0.00 0.00 0.00 3.16
2530 3220 0.106519 GGCCCACCTCAATATGCAGT 60.107 55.000 0.00 0.00 0.00 4.40
2531 3221 0.184451 AGGCCCACCTCAATATGCAG 59.816 55.000 0.00 0.00 46.34 4.41
2532 3222 2.320671 AGGCCCACCTCAATATGCA 58.679 52.632 0.00 0.00 46.34 3.96
2542 3232 1.367471 GCACAGAAAAAGGCCCACC 59.633 57.895 0.00 0.00 0.00 4.61
2543 3233 0.681175 ATGCACAGAAAAAGGCCCAC 59.319 50.000 0.00 0.00 0.00 4.61
2544 3234 0.680618 CATGCACAGAAAAAGGCCCA 59.319 50.000 0.00 0.00 0.00 5.36
2545 3235 0.037046 CCATGCACAGAAAAAGGCCC 60.037 55.000 0.00 0.00 0.00 5.80
2546 3236 0.681175 ACCATGCACAGAAAAAGGCC 59.319 50.000 0.00 0.00 0.00 5.19
2547 3237 2.137523 CAACCATGCACAGAAAAAGGC 58.862 47.619 0.00 0.00 0.00 4.35
2561 3251 3.012518 GCTCACTTCTACATGCAACCAT 58.987 45.455 0.00 0.00 0.00 3.55
2562 3252 2.224499 TGCTCACTTCTACATGCAACCA 60.224 45.455 0.00 0.00 0.00 3.67
2563 3253 2.426522 TGCTCACTTCTACATGCAACC 58.573 47.619 0.00 0.00 0.00 3.77
2564 3254 4.691860 AATGCTCACTTCTACATGCAAC 57.308 40.909 0.00 0.00 34.07 4.17
2565 3255 5.005740 AGAAATGCTCACTTCTACATGCAA 58.994 37.500 0.00 0.00 34.07 4.08
2566 3256 4.582869 AGAAATGCTCACTTCTACATGCA 58.417 39.130 0.00 0.00 30.05 3.96
2567 3257 5.557891 AAGAAATGCTCACTTCTACATGC 57.442 39.130 0.00 0.00 31.61 4.06
2568 3258 7.137490 TGAAAGAAATGCTCACTTCTACATG 57.863 36.000 0.00 0.00 31.61 3.21
2569 3259 7.609146 TCATGAAAGAAATGCTCACTTCTACAT 59.391 33.333 0.00 2.19 33.31 2.29
2570 3260 6.936335 TCATGAAAGAAATGCTCACTTCTACA 59.064 34.615 0.00 0.15 31.61 2.74
2571 3261 7.369803 TCATGAAAGAAATGCTCACTTCTAC 57.630 36.000 0.00 0.00 31.61 2.59
2572 3262 7.825761 TCATCATGAAAGAAATGCTCACTTCTA 59.174 33.333 0.00 0.00 31.61 2.10
2573 3263 6.657966 TCATCATGAAAGAAATGCTCACTTCT 59.342 34.615 0.00 0.00 33.25 2.85
2574 3264 6.849502 TCATCATGAAAGAAATGCTCACTTC 58.150 36.000 0.00 0.00 0.00 3.01
2575 3265 6.127703 CCTCATCATGAAAGAAATGCTCACTT 60.128 38.462 0.00 0.00 0.00 3.16
2576 3266 5.357314 CCTCATCATGAAAGAAATGCTCACT 59.643 40.000 0.00 0.00 0.00 3.41
2577 3267 5.125097 ACCTCATCATGAAAGAAATGCTCAC 59.875 40.000 0.00 0.00 0.00 3.51
2578 3268 5.124936 CACCTCATCATGAAAGAAATGCTCA 59.875 40.000 0.00 0.00 0.00 4.26
2579 3269 5.450137 CCACCTCATCATGAAAGAAATGCTC 60.450 44.000 0.00 0.00 0.00 4.26
2580 3270 4.401519 CCACCTCATCATGAAAGAAATGCT 59.598 41.667 0.00 0.00 0.00 3.79
2581 3271 4.679662 CCACCTCATCATGAAAGAAATGC 58.320 43.478 0.00 0.00 0.00 3.56
2582 3272 4.158949 TGCCACCTCATCATGAAAGAAATG 59.841 41.667 0.00 2.62 0.00 2.32
2583 3273 4.346730 TGCCACCTCATCATGAAAGAAAT 58.653 39.130 0.00 0.00 0.00 2.17
2584 3274 3.765381 TGCCACCTCATCATGAAAGAAA 58.235 40.909 0.00 0.00 0.00 2.52
2585 3275 3.438216 TGCCACCTCATCATGAAAGAA 57.562 42.857 0.00 0.00 0.00 2.52
2586 3276 3.284617 CATGCCACCTCATCATGAAAGA 58.715 45.455 0.00 0.00 39.80 2.52
2587 3277 2.223735 GCATGCCACCTCATCATGAAAG 60.224 50.000 6.36 0.00 39.80 2.62
2588 3278 1.752498 GCATGCCACCTCATCATGAAA 59.248 47.619 6.36 0.00 39.80 2.69
2589 3279 1.064240 AGCATGCCACCTCATCATGAA 60.064 47.619 15.66 0.00 39.80 2.57
2590 3280 0.549469 AGCATGCCACCTCATCATGA 59.451 50.000 15.66 0.00 39.80 3.07
2591 3281 1.067060 CAAGCATGCCACCTCATCATG 59.933 52.381 15.66 0.00 40.23 3.07
2592 3282 1.399714 CAAGCATGCCACCTCATCAT 58.600 50.000 15.66 0.00 0.00 2.45
2593 3283 0.681887 CCAAGCATGCCACCTCATCA 60.682 55.000 15.66 0.00 0.00 3.07
2594 3284 0.394762 TCCAAGCATGCCACCTCATC 60.395 55.000 15.66 0.00 0.00 2.92
2595 3285 0.260816 ATCCAAGCATGCCACCTCAT 59.739 50.000 15.66 0.00 0.00 2.90
2596 3286 0.681887 CATCCAAGCATGCCACCTCA 60.682 55.000 15.66 0.00 0.00 3.86
2597 3287 0.682209 ACATCCAAGCATGCCACCTC 60.682 55.000 15.66 0.00 0.00 3.85
2598 3288 0.251922 AACATCCAAGCATGCCACCT 60.252 50.000 15.66 0.00 0.00 4.00
2599 3289 0.108520 CAACATCCAAGCATGCCACC 60.109 55.000 15.66 0.00 0.00 4.61
2600 3290 0.889994 TCAACATCCAAGCATGCCAC 59.110 50.000 15.66 0.00 0.00 5.01
2601 3291 1.179152 CTCAACATCCAAGCATGCCA 58.821 50.000 15.66 0.00 0.00 4.92
2602 3292 1.404391 CTCTCAACATCCAAGCATGCC 59.596 52.381 15.66 0.00 0.00 4.40
2603 3293 2.362736 TCTCTCAACATCCAAGCATGC 58.637 47.619 10.51 10.51 0.00 4.06
2604 3294 5.578005 ATTTCTCTCAACATCCAAGCATG 57.422 39.130 0.00 0.00 0.00 4.06
2605 3295 5.826737 CCTATTTCTCTCAACATCCAAGCAT 59.173 40.000 0.00 0.00 0.00 3.79
2606 3296 5.188434 CCTATTTCTCTCAACATCCAAGCA 58.812 41.667 0.00 0.00 0.00 3.91
2607 3297 5.189180 ACCTATTTCTCTCAACATCCAAGC 58.811 41.667 0.00 0.00 0.00 4.01
2608 3298 8.043710 ACTAACCTATTTCTCTCAACATCCAAG 58.956 37.037 0.00 0.00 0.00 3.61
2609 3299 7.824289 CACTAACCTATTTCTCTCAACATCCAA 59.176 37.037 0.00 0.00 0.00 3.53
2610 3300 7.331026 CACTAACCTATTTCTCTCAACATCCA 58.669 38.462 0.00 0.00 0.00 3.41
2611 3301 6.763610 CCACTAACCTATTTCTCTCAACATCC 59.236 42.308 0.00 0.00 0.00 3.51
2612 3302 6.763610 CCCACTAACCTATTTCTCTCAACATC 59.236 42.308 0.00 0.00 0.00 3.06
2613 3303 6.353082 CCCCACTAACCTATTTCTCTCAACAT 60.353 42.308 0.00 0.00 0.00 2.71
2614 3304 5.045869 CCCCACTAACCTATTTCTCTCAACA 60.046 44.000 0.00 0.00 0.00 3.33
2615 3305 5.429130 CCCCACTAACCTATTTCTCTCAAC 58.571 45.833 0.00 0.00 0.00 3.18
2616 3306 4.473559 CCCCCACTAACCTATTTCTCTCAA 59.526 45.833 0.00 0.00 0.00 3.02
2617 3307 4.037927 CCCCCACTAACCTATTTCTCTCA 58.962 47.826 0.00 0.00 0.00 3.27
2618 3308 3.181453 GCCCCCACTAACCTATTTCTCTC 60.181 52.174 0.00 0.00 0.00 3.20
2619 3309 2.778270 GCCCCCACTAACCTATTTCTCT 59.222 50.000 0.00 0.00 0.00 3.10
2620 3310 2.778270 AGCCCCCACTAACCTATTTCTC 59.222 50.000 0.00 0.00 0.00 2.87
2621 3311 2.859951 AGCCCCCACTAACCTATTTCT 58.140 47.619 0.00 0.00 0.00 2.52
2622 3312 3.072622 CCTAGCCCCCACTAACCTATTTC 59.927 52.174 0.00 0.00 0.00 2.17
2623 3313 3.053826 CCTAGCCCCCACTAACCTATTT 58.946 50.000 0.00 0.00 0.00 1.40
2624 3314 2.021341 ACCTAGCCCCCACTAACCTATT 60.021 50.000 0.00 0.00 0.00 1.73
2625 3315 1.584105 ACCTAGCCCCCACTAACCTAT 59.416 52.381 0.00 0.00 0.00 2.57
2626 3316 1.021275 ACCTAGCCCCCACTAACCTA 58.979 55.000 0.00 0.00 0.00 3.08
2627 3317 1.021275 TACCTAGCCCCCACTAACCT 58.979 55.000 0.00 0.00 0.00 3.50
2628 3318 2.113807 ATACCTAGCCCCCACTAACC 57.886 55.000 0.00 0.00 0.00 2.85
2629 3319 4.903649 TCTAAATACCTAGCCCCCACTAAC 59.096 45.833 0.00 0.00 0.00 2.34
2630 3320 5.160511 TCTAAATACCTAGCCCCCACTAA 57.839 43.478 0.00 0.00 0.00 2.24
2631 3321 4.838105 TCTAAATACCTAGCCCCCACTA 57.162 45.455 0.00 0.00 0.00 2.74
2632 3322 3.719368 TCTAAATACCTAGCCCCCACT 57.281 47.619 0.00 0.00 0.00 4.00
2633 3323 7.130775 TCTATATCTAAATACCTAGCCCCCAC 58.869 42.308 0.00 0.00 0.00 4.61
2634 3324 7.306751 TCTATATCTAAATACCTAGCCCCCA 57.693 40.000 0.00 0.00 0.00 4.96
2635 3325 8.066247 TCTTCTATATCTAAATACCTAGCCCCC 58.934 40.741 0.00 0.00 0.00 5.40
2636 3326 9.663365 ATCTTCTATATCTAAATACCTAGCCCC 57.337 37.037 0.00 0.00 0.00 5.80
2646 3336 9.197694 GCGTTCACACATCTTCTATATCTAAAT 57.802 33.333 0.00 0.00 0.00 1.40
2647 3337 8.194769 TGCGTTCACACATCTTCTATATCTAAA 58.805 33.333 0.00 0.00 0.00 1.85
2648 3338 7.712797 TGCGTTCACACATCTTCTATATCTAA 58.287 34.615 0.00 0.00 0.00 2.10
2649 3339 7.228706 TCTGCGTTCACACATCTTCTATATCTA 59.771 37.037 0.00 0.00 0.00 1.98
2650 3340 6.039829 TCTGCGTTCACACATCTTCTATATCT 59.960 38.462 0.00 0.00 0.00 1.98
2651 3341 6.209361 TCTGCGTTCACACATCTTCTATATC 58.791 40.000 0.00 0.00 0.00 1.63
2652 3342 6.149129 TCTGCGTTCACACATCTTCTATAT 57.851 37.500 0.00 0.00 0.00 0.86
2653 3343 5.576447 TCTGCGTTCACACATCTTCTATA 57.424 39.130 0.00 0.00 0.00 1.31
2654 3344 4.456280 TCTGCGTTCACACATCTTCTAT 57.544 40.909 0.00 0.00 0.00 1.98
2655 3345 3.934457 TCTGCGTTCACACATCTTCTA 57.066 42.857 0.00 0.00 0.00 2.10
2656 3346 2.802816 GTTCTGCGTTCACACATCTTCT 59.197 45.455 0.00 0.00 0.00 2.85
2657 3347 2.410262 CGTTCTGCGTTCACACATCTTC 60.410 50.000 0.00 0.00 35.54 2.87
2658 3348 1.526887 CGTTCTGCGTTCACACATCTT 59.473 47.619 0.00 0.00 35.54 2.40
2659 3349 1.139989 CGTTCTGCGTTCACACATCT 58.860 50.000 0.00 0.00 35.54 2.90
2660 3350 0.163788 CCGTTCTGCGTTCACACATC 59.836 55.000 0.00 0.00 39.32 3.06
2716 3406 6.206829 TGAGGATAGTGTGTCCATTCGTATAG 59.793 42.308 0.00 0.00 38.25 1.31
2861 3559 3.996150 AGGAACTTCACATGCTTGTTG 57.004 42.857 1.83 0.00 27.25 3.33
3143 3841 9.444600 TTGACAATTTATTCCCACTAGTAGTTC 57.555 33.333 0.00 0.00 0.00 3.01
3148 3846 7.362920 GCACATTGACAATTTATTCCCACTAGT 60.363 37.037 0.00 0.00 0.00 2.57
3168 3866 9.577110 CATAAAGTACATGAAGAAATGCACATT 57.423 29.630 0.00 0.00 0.00 2.71
3223 3921 3.063316 GCAACACAACCAACAATTTGACC 59.937 43.478 2.79 0.00 34.24 4.02
3240 3938 5.518848 ACAATCTCAGAATGTTTGCAACA 57.481 34.783 0.00 0.88 46.94 3.33
3264 3962 1.344114 CCACCCACACCATTTTCCTTG 59.656 52.381 0.00 0.00 0.00 3.61
3385 6709 9.323985 AGCAGCAAAATCTAAATAACACAAAAA 57.676 25.926 0.00 0.00 0.00 1.94
3416 6740 3.216147 GCATCAACGGTATGCTTGTTT 57.784 42.857 8.30 0.00 45.05 2.83
3428 6752 0.373716 GTCGCCCTAAAGCATCAACG 59.626 55.000 0.00 0.00 0.00 4.10
3429 6753 1.448985 TGTCGCCCTAAAGCATCAAC 58.551 50.000 0.00 0.00 0.00 3.18
3541 6878 2.043664 AGGGAGACATCTGGTGAAGAGA 59.956 50.000 0.00 0.00 38.67 3.10
3542 6879 2.168106 CAGGGAGACATCTGGTGAAGAG 59.832 54.545 0.00 0.00 38.67 2.85
3543 6880 2.182827 CAGGGAGACATCTGGTGAAGA 58.817 52.381 0.00 0.00 39.94 2.87
3556 6893 1.289066 CGTTGCTTCGACAGGGAGA 59.711 57.895 0.00 0.00 0.00 3.71
3666 7071 0.380378 AACGTGAATGTGTGTGGTGC 59.620 50.000 0.00 0.00 0.00 5.01
3671 7076 2.731451 CGAGATGAACGTGAATGTGTGT 59.269 45.455 0.00 0.00 0.00 3.72
3674 7079 2.345641 GGTCGAGATGAACGTGAATGTG 59.654 50.000 0.00 0.00 0.00 3.21
3675 7080 2.231478 AGGTCGAGATGAACGTGAATGT 59.769 45.455 0.00 0.00 40.15 2.71
3676 7081 2.881074 AGGTCGAGATGAACGTGAATG 58.119 47.619 0.00 0.00 40.15 2.67
3677 7082 3.193691 AGAAGGTCGAGATGAACGTGAAT 59.806 43.478 0.00 0.00 40.15 2.57
3678 7083 2.557056 AGAAGGTCGAGATGAACGTGAA 59.443 45.455 0.00 0.00 40.15 3.18
3679 7084 2.160205 AGAAGGTCGAGATGAACGTGA 58.840 47.619 0.00 0.00 40.15 4.35
3698 7103 4.279671 AGGAGGAAATCTATGCACGTAGAG 59.720 45.833 5.85 0.00 34.41 2.43
3745 7150 1.675641 GATTCCGGCAGTGGCAAGT 60.676 57.895 17.80 0.45 43.71 3.16
3754 7159 3.797353 GGAGCCTGGATTCCGGCA 61.797 66.667 28.36 0.00 42.52 5.69
3840 7245 0.455972 GACAGCACTGAGTCTCTCGC 60.456 60.000 4.31 1.31 32.35 5.03
3913 7318 0.817654 CGTCCTCTATGCTGACACCA 59.182 55.000 0.00 0.00 0.00 4.17
4021 7426 6.317857 GTGTTTCCTATTCAATGTGCTCTTC 58.682 40.000 0.00 0.00 0.00 2.87
4069 7474 0.316204 GGACATGCTGCAGTGCTTTT 59.684 50.000 17.60 0.00 0.00 2.27
4072 7477 2.745100 CGGACATGCTGCAGTGCT 60.745 61.111 17.60 0.00 0.00 4.40
4084 7489 1.673920 GTTTCAGTTGCTTTCCGGACA 59.326 47.619 1.83 0.00 0.00 4.02
4124 7532 6.469410 TCCAATACAACAAGGTACCACTTAG 58.531 40.000 15.94 3.35 0.00 2.18
4125 7533 6.436738 TCCAATACAACAAGGTACCACTTA 57.563 37.500 15.94 0.00 0.00 2.24
4126 7534 5.313280 TCCAATACAACAAGGTACCACTT 57.687 39.130 15.94 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.