>input_sequence_36980
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----------------------CTATATATCCCTTTTCAACCCCCTCCTTCCCTGTCGCCTGCCTTCCGTTCTAGA---C
TCCTTCTCCCCTCCCCAAACCCAGAGCAAGC------A-------CCATGGCTCCGATTGGCGTGGGCAGCACCCTCCCC
GACGGCCAGCTCGCGTGGTTCGACGAGAGCGACCAGATGCAGCAGGTCTCCATCCACTCCCTGGCCGCCGGCAAGAAGGT
CATCCTCTTCGGTGTCCCTGGCGCCTTCACCCCCACCTGCAGGTATCTTCCTTCACCAGTACAAACAGTCGAACAGATCG
AGAAAAACGAAGTGAGCGTTTG----ACCCCTTGTAACCGATCGATAGCGAGGCCGAATTGTTAGCGGATGGATCCAAGA
TTGACTTTTTCCTTCTCGCTTATAGCTGCTGCGAAACCGGCCCCTGTAAATCTAGATTTGCTTAGGAGCCAGGATCCCCT
GTTCCTCCGGAATCGATTTATTTTTTACCGT--AATAGCTGCAAGATTTGGCTTAACTGCCAGCTTTTCCCTGTCAAATT
TCACATGTAGATTAGAATTTGTGAACCTGGACGCATCTAGCTAAGCTTCCATAAATTGATCTTT-TGTGAGCGAGTGCTC
TAAACCGCCTGATTTGACGGGATTTTTGGTGGAGCTTGGTCTAGTACTCTAGTAGATTGTTTTTGCTTCACTGTTTCAAT
TTATATTTTAAGTAAGTTTGAGATATCTGAGTGTTTACTTCACTAATCACTACCCTGCGGGCAAATCAGCACTTTTTTTC
TTG------------------------------------------------TTCTTTCAGAAAACGGGATTCTGTTGCTC
CTTT-ATCCTGTTTCGTAG-------------------------------------------------------------
------------ACCATGGCAAATCGAATGTTTTCCATGGCAATTTTAGTTGACACTGAGGATGGCAAGTTTAGTTGGCA
AGCACGGCAATTTTCTGGCAAGAAACAAACTATGGGTGGATTTTCCGTGCTTACCAGCTAAACTTGCCATGGT-AACAAA
TATAAATTGCCACAAAAAACACTGGATTTGCCATGGTCAAATCCTGAACGTTTGGGACTTATAGGTGTCGAAGAAAAAGC
ACTCATATTGTGTCTGTTATCTTCTATGAATGCAGCAATCAGCATGTACCAGGCTTCATTACTCAGGCCGAGGAGCTCAA
AGCCAAGGGTGTAGATGAGATCCTGCTTGTCAGCGGTATGCTTTCTGCATTTTTTTTATGTGTTCATTATATCATGTTGT
GAAAGCAGATATTGTCTGTAATTTTTGCCGACAATTACTTTTTTTACCTG-AACATGGATGGCCACATGAAAGCATATAT
TAGATATTTTGAGTTCTTAGTGTTCTCTGTATAATAGTAAGGTAGCTCCCTGGTACCATTGAATGACAGGTTCATATTGT
TGCAGAAATATTTTGCAATACATTTCAAAGATATTTGATTGTATTGACATGAATATTTGAAATAATAATGTGAAAACTAA
AACTGAAAATATGTATGGTTTATTGTGTTTGACAATTATATAGTTGTAAAGAATTCAGTAAATATAAATAGCATAATAGA
ATGAAAAATGGCATTCATAACTGCATATTGAGGTGGGCCTTTTTCTGTGCATGGTTGCATGTAGAAGTGAGCATTTCTTT
CATGATGAGGTGGCATGCTTGGATGTTGAGAGAAATAGGTTAGTGGGGGCTAGGTATTTAGATATAGAAGATGTGTGAAC
GCAGAACGGGCCTGTAGCCTAGTTGTTGCAATTGCAATGACCTTACTATACGAATGGACA--------CACTATCCTCAG
CATATGATCTTGATTTAAAGCAGCTAGGTCCATAATTACACTTGATTAATTCACTATGCTATTGTTTTGCAGTTAATGAC
CCCTTTGTCATGAAAGCATGGGCGAAGACATACCCAGACAACAAGCATGTGAAGTTCCTTGCTGATGGAGCGGCAGCATA
CACAAAAGCACTTGGTCTTGAGCTTGATCTTACGGAGAAAGGATTGGGTCTTCGTTCGAGGCGGTTTGCTCTCCTTGCTG
ACGACCTCAAGGTCACCGTCGCAAACGTCGAGGAAGGTGGCCAGTTCACAATCTCTGGTGCCGAGGAGATCCTCAAGGCA
CTGTAGGAGCTTCAGCGCTTCGGAATCGCAGCGATCACCCAAACCTTGTGTCATATCGATGTAGTTTGAACTTGTCTGCC
GAACTACTAGTGGGA-----------------------------------------------------------------
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>chr3A_1_TraesCS3A01G270300
GGCACGACGA-CACATCGTGAAGGGTTCTCGTGGATCCATCGCGGCGGTGACGGAACAAGCGGGGACAAAGGCAATCGGG
GCTAAGAAAGCGGGCTTTGGCGCGGAAAGAGCGGTAGGATTGTGAATGCCCATGATCCGAGCGGGGTTTTGGATAGGACA
TGCTGTGTCGGAGTCCATCACGGCTCCCCTTGATTTGGTGCCGGGCTGCAGGATTTCGGACATCCTAACCGGTCCAACTC
AATTTGATGACCCGCGTCGAAGGCCTAAAAATGTGTGGACCGTTTGGCCCAGATATTTGCGGACATTTTGATGAAATCCG
TTGGAGATATGTTCCAAACAGTTTATCTATTCGGGCATGGCCAATGCGTCGCCTCAACTCGGTGCTCCGCAGGCCAGCTA
GGTTCGGGTGTCAGGAAGGGATGCCTCGCAGTGTACTAGTGCTGCCTGCAGAAGAGGCGGGTGCTTAAGGGAAAAGGCTA
GAGAAAAAGAAAAAAGGTCTGGCTTAACAGCAGCCCGTCGTTTGTCTCATGGCTGATGCGTGTGTGAATGAGGAAGAAAA
GGATGGA-------------------------------------------------------------------------
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------------------------------------------------------------------TAAAGTAAGAGAGA
GGGAGCAACATGGGACCCACATGCTGCTGCTGCTTCCGTTGGATGATATTATAGAAAGCAATGGCTTCGTACATACAAGC
CTACATGAAGGGCATGAGACCACCGTATACTGATGCTTCCAGTGTTCATGCCCTTTCAAATATCTCCGGACGTTTTGATG
ATGCGCGTCGGAGATACGGTCTCAAGACGTTTGCAAACTCTTTTTTTTGTTGATTGACGTGCGTCGGAGATGCCCCAAGA
TTATTTACCCAGGACTCCGTCTTTTTCTTGCTGAGCAGGGTAGGGT-AGAGCATA-TTTGCCAGAATTTGGCGTTCACAC
CCGGCGACACACCCAAGGCCACCAACCAGCAAGCCAATTAACCCAATCAATTGCGATCCACTATTTATATATTCGCCTTC
GATACCAATACCACATTGTTTTCTATATATCCCTTTTCAACCCCCTCCTTCCCTGTCGCCTGCCTTCCGTTCTAGA---C
TCCTTCTCCCCTCCCCAAACCCAGAGCAAGC------A-------CCATGGCTCCGATTGGCGTGGGCAGCACCCTCCCC
GACGGCCAGCTCGCGTGGTTCGACGAGAGCGACCAGATGCAGCAGGTCTCCATCCACTCCCTGGCCGCCGGCAAGAAGGT
CATCCTCTTCGGTGTCCCTGGCGCCTTCACCCCCACCTGCAGGTATCTTCCTTCACCAGTACAAACAGTCGAACAGATCG
AGAAAAACGAAGTGAGCGTTTG----ACCCCTTGTAACCGATCGATAGCGAGGCCGAATTGTTAGCGGATGGATCCAAGA
TTGACTTTTTCCTTCTCGCTTATAGCTGCTGCGAAACCGGCCCCTGTAAATCTAGATTTGCTTAGGAGCCAGGATCCCCT
GTTCCTCCGGAATCGATTTATTTTTTACCGT--AATAGCTGCAAGATTTGGCTTAACTGCCAGCTTTTCCCTGTCAAATT
TCACATGTAGATTAGAATTTGTGAACCTGGACGCATCTAGCTAAGCTTCCATAAATTGATCTTT-TGTGAGCGAGTGCTC
TAAACCGCCTGATTTGACGGGATTTTTGGTGGAGCTTGGTCTAGTACTCTAGTAGATTGTTTTTGCTTCACTGTTTCAAT
TTATATTTTAAGTAAGTTTGAGATATCTGAGTGTTTACTTCACTAATCACTACCCTGCGGGCAAATCAGCACTTTTTTTC
TTG------------------------------------------------TTCTTTCAGAAAACGGGATTCTGTTGCTC
CTTT-ATCCTGTTTCGTAG-------------------------------------------------------------
------------ACCATGGCAAATCGAATGTTTTCCATGGCAATTTTAGTTGACACTGAGGATGGCAAGTTTAGTTGGCA
AGCACGGCAATTTTCTGGCAAGAAACAAACTATGGGTGGATTTTCCGTGCTTACCAGCTAAACTTGCCATGGT-AACAAA
TATAAATTGCCACAAAAAACACTGGATTTGCCATGGTCAAATCCTGAACGTTTGGGACTTATAGGTGTCGAAGAAAAAGC
ACTCATATTGTGTCTGTTATCTTCTATGAATGCAGCAATCAGCATGTACCAGGCTTCATTACTCAGGCCGAGGAGCTCAA
AGCCAAGGGTGTAGATGAGATCCTGCTTGTCAGCGGTATGCTTTCTGCATTTTTTTTATGTGTTCATTATATCATGTTGT
GAAAGCAGATATTGTCTGTAATTTTTGCCGACAATTACTTTTTTTACCTG-AACATGGATGGCCACATGAAAGCATATAT
TAGATATTTTGAGTTCTTAGTGTTCTCTGTATAATAGTAAGGTAGCTCCCTGGTACCATTGAATGACAGGTTCATATTGT
TGCAGAAATATTTTGCAATACATTTCAAAGATATTTGATTGTATTGACATGAATATTTGAAATAATAATGTGAAAACTAA
AACTGAAAATATGTATGGTTTATTGTGTTTGACAATTATATAGTTGTAAAGAATTCAGTAAATATAAATAGCATAATAGA
ATGAAAAATGGCATTCATAACTGCATATTGAGGTGGGCCTTTTTCTGTGCATGGTTGCATGTAGAAGTGAGCATTTCTTT
CATGATGAGGTGGCATGCTTGGATGTTGAGAGAAATAGGTTAGTGGGGGCTAGGTATTTAGATATAGAAGATGTGTGAAC
GCAGAACGGGCCTGTAGCCTAGTTGTTGCAATTGCAATGACCTTACTATACGAATGGACA--------CACTATCCTCAG
CATATGATCTTGATTTAAAGCAGCTAGGTCCATAATTACACTTGATTAATTCACTATGCTATTGTTTTGCAGTTAATGAC
CCCTTTGTCATGAAAGCATGGGCGAAGACATACCCAGACAACAAGCATGTGAAGTTCCTTGCTGATGGAGCGGCAGCATA
CACAAAAGCACTTGGTCTTGAGCTTGATCTTACGGAGAAAGGATTGGGTCTTCGTTCGAGGCGGTTTGCTCTCCTTGCTG
ACGACCTCAAGGTCACCGTCGCAAACGTCGAGGAAGGTGGCCAGTTCACAATCTCTGGTGCCGAGGAGATCCTCAAGGCA
CTGTAGGAGCTTCAGCGCTTCGGAATCGCAGCGATCACCCAAACCTTGTGTCATATCGATGTAGTTTGAACTTGTCTGCC
GAACTACTAGTGGGAATAAATTGTCAATGTGCATTTCTTCATGTACTTTATGTGCGGTGCAAGTGACTTCAGAGTTTTCC
GGTCAAATTGTTGGTTGTGTTGCAAACATTCTGAGATTGTTCAAGGAAAATGGTGTGGGTGGTATTTGTGTGAATCGTCA
TTACCTTGTGAAATCAACAGGCAAGTGTTTTTTTCATGGTGA-TGTCTTAACTGGTATGTTGGTGCAGATTA--------
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---------------------------------------------------------CTGTTTATGTGTTTTTGTGTTAT
TTAGATTTTGCTGCTTAAGAAACAAGCATACCGTTGATGCTTTAGGGCGACAAAAAATGCTATGCTAATTTCATTGCAGC
TCAGCTGAGACGAGAAGGAAATTT---------CTTCCCCAATCTC----ACTTTGAGCTATTTTACAGGCGCCTCTTCT
CTTCACCAGATGTCTCCCTGTCGAAGCAACGCAAACTGCCCGCCTCACCTATGAGAA-----------------------
---------------------------------------------AAGCTTCTTGATCCACCACCAACTGCCCGTCTCAC
CTATGAGAAAAGCTTCTTGATCCAGCACCAGCACCACACACATTCACGTTCATCTCGACCTTCTCTACGTGCATAGATTT
CCTCCTGCCGATACGGGGGATCTTCTTCAACTTGCCACTGCCGGAATCCAGGCTCCTGTCCTCGAGCTCTTGCCAGCAAA
ATGAATCGCTGGACTTGGCCGAAGTGGCCTCCGTGGCATCGACGGCGAGAGACTCAGTGCTGTCGTCCTCTAAACTAGGC
CGCCGCCTCGATTTCAAGCGCCTCGGATCCCGAGCGATGGTGTCAGCATAGAGGACGTCCTCGATCCGTGACAGAACCGC
GAACGCCAAGCTCTCGAGAGCCCTGGAGTAGCTCTCCAAGATGGCAAACCCAACATCCTGAAAGAGAAGAGCACATTGAA
TAGGAAACACGTACTGCAGCATGCAGCTAAAAAAAAAGCACTGCAGCATGTCCGGAAAGCAACTGAAACATTGCTGCTTC
TCTATG---TACTAAGTGGTACCTTGTTGTATTGGATCTTGCTTA
>chr3D_1
GGCAGACGATGCACATCGTGAAGGGGTCTCACGGATCCATCGCGACGATGGCGGAACAGGAGGGGACAAAAACGACCAGG
GCGAAGAGGGCGGGCTTTGGCGCGGAAAGAGTGGTAGGGTTGTGAATGCCCAGTATCCGAGCAGGGTTTTGGATGGAACA
TGG-GTGTGGGAGTCCATCAAGA-TCCCCTCGATTTGGTGCCGGACTGCAGGATTT--GACATCCTAACCGGTCCAACTC
AATTTGGTGACCGTT---GAATGCCTAAAAATGTGTGGACCGTTTGGCCCAGATATTTACGGGCATTTTGATGAAATGCG
TTGGAGATATATATTC----------------------------------------------------------------
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--------------------------------------------------------CAAATATCTCCGGACGTTTTGATG
ATGCGCGTCGGAGATACGGTCTCAAGACGTTTGCAAACTCTTTTTTTGG-----TGATGTGCGTCGGAGATGCCCCAAGA
TTATTTACCCAGGATTCTGCCTTTTTCTTGCTGAGCAGGGTAGGGTTAGAGCATA-TTTGCCAGAATTTCGCGTTCACAC
GCGGCGACACACCCAAGGCCACCAACCGGCAAGCCAATTAACCCAATCAATTGCGATCCACTATTTATATATTCGCCTTC
GATACCAATACCACATTGTTTTCTATATATCCCTTTTCAACCCCC----TCCCTGTCGCCTGCCTTCCGTTCTAGACCCC
TCCTTCTCCCCTCCCCAAACCCAGAGCAAGC------AAGCGCAACCATGGCTCCGATTGGCGTGGGCAGCACCCTCCCC
GACGGCCAGCTCGCGTGGTTCGACGAGAGCGAACAGATGCAGCAGGTCTCCATCCACTCCCTGGCCGCCGGCAAGAAGGT
CATCCTCTTCGGCGTCCCTGGCGCCTTCACCCCCACCTGCAGGTATCTTCTTTCACCAGTACAAACAGTC-AACAGATCG
AGAAAAACGAAGTGTGCGTTTG----ACCTCTTGTAACAGATGGATAGCGAGGCTGAATTGTTAGCGGATGTATCCAAGA
TTGACTTTTTC-TTCTCGCTTATAGCTTCTGCGAAACCGGCCCCTCTAAATCTAGATTTGCTTAGGCGCCAGGATCCCCT
GTTCCTCCGGAATTGATTTACTTTGTGCCGTAAAATAGCTGCAAGATTTTGCTTAACTGCCAGCTTTTCCTTGTCAAATT
TCACATGTAGATTAGAATTTGTGAACCTGGACGCATCTAGCTAAGCTTCCATAAATTGATCTTTCTGTGAGCGAGTGCTC
TAAACCGGCTGATTTGACGGGATTTTTGGTAGAGCTTGGTCTAGTACTCTAGTAGATTGTTTTTGTTTCACTGTTTCAAT
TTGTATTTTAAGTAAGTTTGAGATATCTGAGTGATTACTTCACTAATCACTACCCTGTGGGCAAATCGTCATTTTTTTTC
TTG---TAGGTAGTGATCTGCTCCTGCCGCAAGACTATTTTGCTCATTTTTTTCTTTCAGAAAACAGGATTCTGTTGCTC
CTTT-ATCCTGTTTTGTAG-------------------------------------------------------------
------------ACCATGGCAAATCAAACATCTTTTATGGCAATTTTTAGTTGACGCGAGGATGGCAAGTTTAGTTGGCC
AGCACGGCAATTTTCTGGCAAGAAACAAACTACGGGTGGATTTTCCATGCTTACCAACTAAACTTGCCATGGTCAACAAA
TATAAATTGCCACAAAAAAAGTTCGATTTGCCATGGTCAAATCCTGAATGTTTGGGATTTATCGGCGTCCAAGAAAAAGC
ACTCATATTTTGTCTGCTCTCTTCTATGAATGCAGCAATCAGCATGTACCAGGCTTCATTACTCAGGCCGAGGAGCTCAA
AGCCAAGGGTGTAGATGAGATCCTGCTTGTCAGCGGTATGCTTTCTGCATTTTGTTTGTGTTCAT----TATCATGTTCT
GAAAGCAGATATTGTCTGTAATTTTTGTCGACAATTACTTTTTTTACCTGAAACATGGATGGCCACATGAAAGCATATAT
TAGATGTTTTGAGTTCTTAGTGTTCTCCGTATAAGAGTAAGGTAGCTCCCTGGTACCATTGAATGACCGGTTCATATTTA
GTGA----------------------------------------------------------------------------
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----------------------------------------------------------------------ATGTGTGAAC
GCTGAACGGGCC-----------TGTTGCAATTGCAATGACCTTAGTATACGAATGGACA--------CACTATCCTCAG
CATATGATCTTGATTTAAAGCAGCTAGGTCCATAATTACACTTGATTAATTCACTACGCTATTGTTTTGCAGTTAATGAC
CCCTTTGTCATGAAAGCATGGGCGAAGACATACCCAGATAACAAGCATGTGAAGTTCCTTGCTGATGGAGCGGCAGCATA
CACAAAAGCACTTGGTCTTGAGCTTGATCTTAGTGAGAAAGGATTGGGTCTCCGTTCGAGGCGGTTTGCTCTCCTTGCTG
ACGACCTCAAGGTCACCGTCGCAAACGTCGAGGAAGGTGGCCAGTTCACAATCTCTGGTGCCGAGGAGATCCTCAAGGCA
CTGTAGGAGCTTCAGCGCTTCGGAATCGCAGCGATCACCCAGACCTTGTGTCATATCGATGTAGTTTGAACTTGTCTGCC
AAACTGC--GTGGGAATAAATTGTCGATGTGCATTTCTTCATGTACTTTATGTGTGGTGCAAGTGACTTCAGAGTTTTCC
AGTCAAATTGTTGGTTGCGTTGCAAACATTCTGAGATTGTTGAAGGAAAATGGTGTGGGTGGTATTTGTGTGAATCATCA
TTACCTTGTGAAATCAACAGGCAAGTGTTTTTTTCATGGTGA-TGTCTTAACTGGTATGTTGGTGCAGATTA--------
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---------------------------------------------------------CTGTTTATGTGCTTTTGTGTTAT
TTAGATTTTGCTGCTTAAGCAACAAGCATGCTATTGATGCTTTAGGGTGACAAAAAATGCTATGCTAATTTTATTGCAGC
TCAGCTGAGACGAGAAGGAAATTTACATCACTTCCTCCCCAATCTCACTTACTCTGAGCTATTTTACAGGCGCCTCT---
CTTCACCAGATGGCTCCCTGTCGAAGCAACGCAAACTGCCCGTCTCACCTATGAGAA-----------------------
---------------------------------------------AAGCTTCTTGATCCACCACCAACTGCCCGTCTCAC
CTATGGGAAAAGCTTCTTGATCCAGCACCAACACCGCA------CACGTTCACCTCGACCTTGTCTACGTGCATAGATTT
CCTCCTGCCGATACGGGGAATTTTCCTCAGCTTGCCACCGCCGGAATCCAAGCTCCTGTCCTCGAGCTCTTGCCAGCAAA
ATGAATCGCTGGACTTGGCCGAAGTGGCCTCCGTGGCATCGACGACGAGAGACTCAGTGCTGTCGTCCTCTAAACTAGGC
CGCCGCCTCGATTTCGCGCGCCTCGGATCCCGAGCGACGGTGTCGGCATAGAGGACGTCCTCGATCCGTGACAGAACCGC
GAACGCCAAGCTCTCGAGAGCCCTGGAGTAGCTCTCCAAGATGGCAAACCCAACATCCTGAAAGAAAAGAGCACATTGAA
TAGGAAACAAGTACTGCAGCATGCAGCTAAAAATAA-GCAATGCAGCACGTCCGGAAAGCAACTGAAACATTGCTGCTTC
TCTATG---TA---AGTGGTACCTTGTTGTATTGGATCTTGCTTA
>chr4B_348
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----------------------------ATTAGGGCATGGCCAATGCGTCCCCTCAACTGGGTGCTCCGCAGGCCAGCTA
GGTTCGGGTGTCAGGAAGGGATGCCT--------ACTAGTGCTGCCTGCAGAAGAGGCGGGTGCTTAAGGGAAAAAGCTA
GAGATAAAGAAAAAAGGTCTGGCTTAGTAGCAGCCCATCGTTTGTCTCCTGGCTGATCCATGTGTGAATGAGGAAGAAAA
GGCAAATTTGACAAATTTGACCTGTGGACGAAATCAAATCAGAGAATGAATTTCCCGTGAAACTATTTCACGCGGCTGAC
CTTTTTGTGTGACGCCCGACACGAAGGCGCCACACTACATTGTGCAACACCTCACGGATAGGCACTACATGTCTGGCCAG
CGTTGCACCCCAGACTGCCTAAAAATTGCTTAGTCATTATGCAGAGCCTAAGAGCTAGGCGTTGCACTGTATAGTGTGTC
TCAGGCGCTGCACTAGTGGTTGCACTACAAAATGAAGCAACCACTAGTGCAACGCCTAGAAGCTACGAGGCGCCTAGCTC
TCAGGCGCTGCACACTGACTTAGTAATTTTCGGATCACACGGGTGCGACGCTGGCCAGGCGTGTAGCGCCTATCTGTGAG
GCGTTGCACAGTGTAGTGTGGCGCCTTCGTGTCGGGCGTCACATAAAAAGGTCAGACGTGTGAAATAGTTTCACGGGCAG
TTCATTCTGTGATTTGATTTCGTCCATAGGCCAAATTTGTCAATTTTGCCGGAAGAAAAAGATGGGTAAAGTAACAGAGA
GGGAGCAACATGGGACCCACATGCTGCTGCTGCTTCCGTTGGATGATATTATAAAAAGCGATGGCTTC--ACATACAAGC
CTACATGGAGGGCATGAGCCCACCGTATAGTAATGCTTCCAGTGTTCATGCCCTTACAAA--------------------
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>chr3B_753
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------------GATACGGTCTCAAGACGTTTGCAAGCTCTTTT---GG-----TGATGTGCTACGGGGATG-CCCAAGA
GTATTTACTCAGGATTCTGTCTTTTTCTTGCTGAGCAGGGTAGGGT-AAAGCATATTTGGCCAGAATTTGGCGTTCACAC
GCGGCGACACACCCAAGGCCACCAACCGGCAAGCCAATTAACCCAATCAATTGTGATCCACTATTTATTTATTCGCCTTG
GATACCAATACCACATTGTTTTCTATATATCCCTTTTCGACCCCC----TCCCTGTCGTCTGCCTTCCGTTCTAGACCCC
TCCTTCTCCCCTCCCCAAACCAGACCAAGCAAGAGCAA-------CCATGGCTCCGATTGGCGTGGGCAGCACCCTCCCC
GACGGCCAGCTCGCGTGGTTCGACGAGAACGACCAGATGCAGCAGGTCTCCATCCACTCGTTGGCCGCCGGCAAGAAGGT
CATCCTCTTCGGCGTCCCCGGTGCCTTCACCCCCACCTGCAGGTATCTTCCTTCACCAGTACAATCAGTC-AACAGATCG
AGAAAAACGAAGTGAGCGTTTGTTTGACCTCTTGTAATCGATGGATAGAGACGCTGAATTGTTAGCGGATGGATCCAAGA
TTGACTTTTCC-TTCTCGCTTATAGCTTCTGCGAAACCAGGCCCTGTAAATCTAGATTTGCTTAGGAGCCAGGATCCCCT
GTTCCTCCGGAATTGATTTACTTTGTACCGT--AATAGCTGCAAGATTTGGCTTAACTGCCAGCTTTTCCTTGTCAAATT
TCACATGTAGATGAGAATTTGTGAACCTGGACGCATCTAGCTAAGCTTCCATAGATTGATCTTTCTGTGAGCGAGTGCTC
TAAACCGGCTGATTTGACGGGATTTTTGGTAGAGCTTGGTCTAGTACTCTAGTAGATTGATTTTGTTTCACTGTTTCAAT
TTATAGTTTAAGTAAGTTTGAGATATCTGAGTGGTTACTTCACTAATCACTACCCTGTGGCCAAATCGT--TTTTTTTTC
TTGTATTAGGTCGTTATCTGCTCCTGCCGCAAGAATATTTTGCTTATTTTTTTCTTTCAGAAAACGGGATTCTGTTGCTC
CTTTTATCCTGTTTTGTTGACTTTACTTTTTCATATTGTAGAAAGAAAAACGTAAATGAATGAGATCCGGACGTCCGGAC
GTCAGATTTTTTACCATGTCAAATTGAATGTTTTTTATGGCAAT-TTTAGTTGACGCGAGGATGGCAAGTTTAGTTGGCA
AGCACAGCAATTT-CTGGCAAAAAACAAACTACAGGCGGATTTGCCATGCTTACCAACTAAACTTGCCATGGTCAA----
----------------------------------------ATCCTGAACATTCGGGACTTATTAGCGTCCAAGAAAAAAC
ACTCATACTGTGTCTTCTCTCTTCTATGAATACAGCAATCAGCATGTACCAGGCTTCATTACTCAGGCCGAGGAGCTCAA
AGCCAAGGGTGTAGATGAGATCCTGCTTGTCAGCGGTATGCTTTCTGCATTTTTTGTGTGTTCAT----TATCATGTTCT
GAAAGCAGATATTG-CTGTAATTTTTGCCGACAAATACCTTTT-TACCTG-AACATGGATGGCCACATGAAAGTATATAT
TAGATGTTTTGAGTTCTTAGTGTTCTCCGTATAATAGTAAGGTAGCTCCCTAGTACAATTGAATGACCGGTTCATATTTA
GTGA----------------------------------------------------------------------------
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----------------------------------------------------------------------ATGTGTGAAC
GCCGAAAGGGCCTGTAGCCTAGTTGTTGCAATTGCAATGACCTTAGTATACGAATGGACAGTTGGACACACTATTCTCAG
CGTTTGATCTTGATTTAAAGCAGCTAGGTCCATAATTGCACTTGATTAATTCACTATGCTATTATTTTGCAGTTAATGAC
CCCTTTGTCATGAAAGCATGGGCGAAGACATACCCAGATAACAAGCATGTGAAGTTCCTTGCTGATGGAGCGGCTGCATA
CACAAAAGCACTTGGTCTTGAGCTTGATCTTACGGAGAAAGGATTGGGTCTTCGTTCGAGGCGGTTTGCTCTCCTTGCTG
ACGACCTCAAGGTCACCGTCGCAAACGTCGAGGAAGGTGGCCAGTTCACAATCTCTGGTGCCGAGGAGATCCTCAAGGCA
CTGTAGGGGCTTCAGCGCTTCGGAATCGCAGCGATCACCCAAACCTTGTGTCATATCGATGTAGTTTGAACTTGTCTGCC
AAACTGCTAGTGGGAATAAATTGTCGATGTGCATTTCTTCATGTACTTTATGTGCGGTGCAAGTGACTTAAGAGTTTTCC
AGTC--ATTGTTGGTTGCGTTGCAAACATTCTGAGATTGTTGAAGGAAAATGGTGTGGGTGGTATTTGTGTGAATCGTCA
TTACCTTGTGAAATCAACAGGCAAGTGTTTTTTTCATGGTGATTGTCTTAACTGGTATGTTATGCAGACTAGAAGAACAC
CCGTGCGTTGCAACGGAGCCACATTAACTTTAAGAGTTCAATATTAATTATGTTAATATTACATTTAATATTCTCATACA
TATCAAGTGACATTGACGGCCTTTTTACCATCAAATTCTCACACACACTCTCTCCCTTCCTCCTCCTCACTCTCTCTCCC
CCTCTCCCTCTCTCTCTTTCTCTCTCTAACACACACATATCCATCTTATTGGATACGGGACCATAATCCATCTATTTCAC
ACGCACACGCGCTAGTGCATAACAATATGAATTATAAAACAGGTTCAAGGTAGTAACAAGGATTCTTCTCATGCATTAAT
AAACAAATGTTCTGCACTGAAGACAAGATAACCAATTCCCAAAGTGCATCAGAGCATCACAGAACATTACTGGCAAGATA
AATGCACGACGATACACCCGACTCATTTAATTAATATAATTAAATTATCAGTAAATTAGTCACCAAACTGCTCGGATGAA
CCGGAAAAGAGCCAACATATATCATCCTAGACAAACGCAACATCAACCATTTACCTTGGTACTTTAGGGGCCAACAGGAG
GATGCATGTAGAAGCGCTTCTTGCCTGCGAATCCACAGCGAGAGAGAGAAATTGGAACCCATTCCCATCACCAACTAATA
AAGAAAGCATGTAAGAAAATTGATATCGGGCCAACTTGGATCTTCGGTGATTGTCCGCCGGTATGGAGAATTTAGGAGGG
TGGGTGCAGGGAGTGGCCTTGTGGATGATGGATGGAGGCGCGGAGGGACGTGGTCACCGGAAGGTCGAAAGCGGAGAGGG
TCGGGCACGTTAGGTGGAGCCGGTGGTGCGCGATAACCGGAGGCGGCCCAATCGTGGGCGGCGAACCGACGATAGCCTCG
GCCCATCTCTCGACGCAGCGAAGATAGAGAGGGCGGCACTTTCGGTGCTCGAGGCCGCCGCTCGGCACCATCTACATCGA
GGGGAAAGAGAGGCGAGAAAGCGATAGGGTGATGCGGGGCTAGGGATTGCGGAGGAGGGTTGGGGCGTGCGATTTGAATG
GATGGTTCTGCCCACCTTTTTCTTGTACGTGGCGGTGGAGACGGCGGCGTCCAGCCATGCAGGCGAGGCATGGGTCGGGC
CGGGCACACGGCGAGGCGCAGTAGCAGAGGCGGGGGCGATTTTTTGCTACTGAGATGGAGGGTGTGGGATTGATCGTTCA
TGTTCTCTTTTCCTTTTTAACGGGAGATGGATGCGATTTTTTCACAAGAGGAGAGATGCGACCACGTACAGATTTCATAA
TAAATTAATTAGGTCCATAACGGGATTTCTTTACAATGCGTTAAGATTTACGTGTTAGTTTTCTTAATAAAGAAATGCAC
TGATGTAGGGATCGATTGATTCGGGTAAGGAAAGATAGATTCGTGATCTTTTGTATGTTAGGAAATTAGTGGTTTGCAAG
GAAAGAGTGGAGAGAAAAAGAATCAATGCGACCACGTATAGATTCCATAATAAATTAATTAGGTCCATAACGGGATTTGT
TTGCAATGCGTTAAGATTTACGTGTTAGTTTTCTTAATAAAGAAATGCACTGATGTAGGGCGCGATTGGTTCGGGTAAGG
AAAGATAGATTCGTGATCTTTTGTATGTTAGGAAATTATTGGTTTGCAAGGAAAGAGTGGAGAGAAAAAGAACCAGTACG
AGGGGGTGGTGGGAGGTGGGACGAATAAAAACCGGACGAAATTGGGAGGTGGGAGGAGGCGAGTAAAAACCGACGAAAAA
AACCAACGAAATTGGGAGGTGGGAGGGAGGATAAAAAAAACCAGAGGAGGTGGGAGGAGGACAAAAATAAACCGTACGAG
GCTACCAACTGCTCCATTAAGAGTAGAGATTGTTTGTGAAAATAACATGCGACGACGACTTAGCGAGCGGATCCCCTTAA
AAAAGACATAGCGAGCAGATTCCCTTAAAACTGGTAGAAATGGATACGATTGACGACGTTGATAAATAGTGGTGAATGTT
GGCATAATTTACTATCATCATGCATGGAAACGAATCATCAAGAAAAAGAATACTTCCTATTACTACACTCATAGGAAGCT
TCCTAATCTCTGCTACCAAACAGTTTCTGCCCAAACAAGGAAGGAAAGTTATGGACGTGATTCGAAAGGAAACAAACGTT
ATGAAGATTAATTAATTTAGATTTGATCTTTAGAGATTGATTCTTTTACATAAAGACATTACTAAATAATTTGCGTCAGT
ATGGAAAGTTCTGATCCGTTCAGTTTTTTTCGTTGTGTGAGAGGGTGAAGTGAAAATAAACCGATGAAGTGGGGGAGGCG
ACGAAAAAAATCTACGACGGTTAACCTACGAAAAAAAAACCGGACGAAAATGATGGGACGAAAATTGACCGGCGAAGACT
ACCAACTGCTCCATTAGGAGTAGAGATTGGTTGGTTCGATTTTTTTTGCGTGGAGGGAACTACCTGGGAGGTGGGAGGGA
GTACGAAAATAAACCGTCTCGGCTGAGCGGGAGGTGGGAGCAAGTACCAAAGAAGTACCAAAAAAGACCGGATGAGGTGG
GACAAAAATAAAATCCGGAACGCGACCTACCAACTGAGACATTAGGAGTAGAGATTCCTGTTTATGTGCTTTTGTGTTAT
TTAGATTTTGCTGCTTAAGCAACAAGCATACTATTGATGCTTTAGGGCGACAAAAGATGCTATGCTAATTTCATTGCAGC
TCAGCTGAGACGAGAAGGAAATATACATCACTTCTTTCCCAATCTCACTTACTTTGAGCTATTTTACAGGCGCCTCT---
CTTCACCAGATGGCTCCCTGTCGAAGCAACGCAAACTGCCCGTCTCACCTACGAGAAAAGCTTCTTGATCCACAACCAAC
TGCCCGTCTCACCTATGAGAAAAGCTTCTTGATCCAGCGAGAGAAAAGCTTCTTGATCCACAACCAACTGCCCGTCTCAC
CTATGAGAAAAGCTTCTTGATCCAGCACCAACACCGCA------CACGTTCATCTCGACCTTGTCTACGTGCATAGATTT
CCTCCTGCTGATACGGGGGATCTTCTTCAGCTTGCCACCGCGGGAATCCAGGCTCCTGTCCTCGAGCTCTTGCCAGCAAA
ATGAATCGCTGGCCTTGGCCGAAGTGGCCTCCGTGGCATCGACAACGAGAGACTCAGTGATGTCGTCCTCTAATCTAGGC
CGCCGCCTCGATTTCGAGCGCCTCGGATCCTGAGCGACGTTGTCGGCATAGAGGACGTCCTCGATCCGTGACAGAACCGC
AAACGCCAAGCTCTCGAGAGCCCTGGAGTAGCTTTCCAAGATGGCAAACCCAACATCCTGAAAGAAAAGAGCACATTGAA
TAGGAAACGAGTACTGCAGCACGCAGCTAAAAATTA-GCACTGCAGCACGT-CGGAAAGCAACTGAAACATTGTTGCTTC
TCTATGTACTA---AGTGGTACCTTGTTGTATTGGATCTTGCTTA
>SNPs
----SSSSSS---------------S----SS------------S--S--S-------S-S---------SS-S-S-S--
--S----SS----------------------S------S-------------SS--------S-----------S-S---
--SS----S-----------S-SS------S-------------S-----------SS----------------------
------S-----SSSSSS---S------------------------------------S---S--------------S--
----------S-SSSSSSSSSSSSSSSS---S------------------S--------S--------------------
--------------------------SSSSSSSS-----------------------------------------S----
----S---------------------SS--------S-----------S--------S-S--------------------
--SSSSS-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------S-----
-----------------------------------------------------S-----S--------SS----------
-------S----------S----------S-S-----------------------S------------------------
-----------------------------------------------S-SSSSS---S----------------------
--------------S--S--------------------------------------------------------------
S--------------------------S----------------------------------------------------
---------------------------------------------SSSS-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------S---------------------------------------------------------S---------
-----------------------------S------------S-----------S-------------------------
-----------S---------------S----------------------------------------------------
-------------S------S---S---------------------------------------------S---------
--------------------------------------------------------------------------------
-------S----------------------S----------------------------------S--------------
---------------------------------S-----------------------S---------SS--S--------
--------------------------------------------------------------------------------
--------------S-----------------------------------------------------------------
----------------------------------SS-----------SSS-SSSSSS-----------------------
--------------------------------S-------------S---------S-----------------------
-------------------SSS-S--------------------------------------S--S---S----------
----------------S-S-------------------------------------------------------------
---------------------------------------------------------S---SSSSSSSS---------S-
--------------------------------------------------------------------------------
-----S---------------------S---------------------------------------S----------SS
SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------
--S------------------------------------------S----------------------------------
--------------------------------------------------------------------------------
--------------------------------------S-----------------------------------------
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S----S-------------------S------------------------------------------------------
S----------------S-----------------------S--------------------------------------
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--------------------------------------------------------------------S-----------
-------------------S-----------SS-----------------------------------------------
-----------------------------------------------------------------------------SSS
------------S-----------------------------S-------------------------------------
--------------------------------------------------------------------------------
------------------------------S----S--SSSSSS------------------S-----------------
-----------------------------S--------S-----------------------------------------
--------------------------------------------S-----------------------------------
---------------S---------------------S------S-----------------------------------
-----------------------------------------------------------------S--------------
---------S-----------------------S--S-----------S-------------------------------
-----------SSS-------------------------------
>forward_427
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-------GTGTCAGGAAGGGATGCCTC-----------------------------------------------------
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>reverse_2593
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--------------------------------TGGGTGGATTTTCCGTGCTT----------------------------
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>forward_1569
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-----------------------------TCCCTTTTCAACCCCCTCCT-------------------------------
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>reverse_3235
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----------------------------------GGGCCTTTTTCTGTGCATGG--------------------------
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>forward_1870
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----------ACGAAGTGAGCGTTTGACCC--------------------------------------------------
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>reverse_3289
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--------GGTGGCATGCTTGGATGTTG----------------------------------------------------
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>forward_3254
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----------------------------------GGGCCTTTTTCTGTGCATGG--------------------------
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>reverse_7474
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---------------------------------AAAAGCACTGCAGCATGTCC---------------------------
---------------------------------------------
