Multiple sequence alignment - TraesCS3A01G269400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G269400 chr3A 100.000 3909 0 0 1 3909 495502454 495498546 0.000000e+00 7219.0
1 TraesCS3A01G269400 chr3B 91.382 2982 178 47 542 3482 487540974 487538031 0.000000e+00 4010.0
2 TraesCS3A01G269400 chr3B 88.839 448 30 8 3480 3907 144498681 144498234 2.070000e-147 532.0
3 TraesCS3A01G269400 chr3B 93.370 181 8 2 258 435 487541277 487541098 8.330000e-67 265.0
4 TraesCS3A01G269400 chr3B 97.561 82 2 0 1 82 487541511 487541430 1.460000e-29 141.0
5 TraesCS3A01G269400 chr3B 80.380 158 10 7 73 230 487541408 487541272 2.490000e-17 100.0
6 TraesCS3A01G269400 chr3D 92.782 2674 125 33 431 3070 373835218 373832579 0.000000e+00 3807.0
7 TraesCS3A01G269400 chr3D 94.215 363 19 2 73 435 373835716 373835356 1.590000e-153 553.0
8 TraesCS3A01G269400 chr3D 90.840 262 17 4 3058 3314 373832564 373832305 1.040000e-90 344.0
9 TraesCS3A01G269400 chr3D 100.000 82 0 0 1 82 373835818 373835737 6.760000e-33 152.0
10 TraesCS3A01G269400 chr7B 86.505 578 65 9 2028 2598 735308274 735307703 1.190000e-174 623.0
11 TraesCS3A01G269400 chr7B 86.609 575 64 9 2028 2595 735806892 735807460 1.190000e-174 623.0
12 TraesCS3A01G269400 chr2B 89.238 446 20 17 3480 3907 757359023 757359458 2.070000e-147 532.0
13 TraesCS3A01G269400 chr5B 87.104 442 36 11 3486 3907 478607772 478607332 7.600000e-132 481.0
14 TraesCS3A01G269400 chr5B 90.798 163 15 0 3710 3872 213247259 213247421 6.580000e-53 219.0
15 TraesCS3A01G269400 chr5B 96.154 52 2 0 3856 3907 213247835 213247886 6.960000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G269400 chr3A 495498546 495502454 3908 True 7219 7219 100.00000 1 3909 1 chr3A.!!$R1 3908
1 TraesCS3A01G269400 chr3B 487538031 487541511 3480 True 1129 4010 90.67325 1 3482 4 chr3B.!!$R2 3481
2 TraesCS3A01G269400 chr3D 373832305 373835818 3513 True 1214 3807 94.45925 1 3314 4 chr3D.!!$R1 3313
3 TraesCS3A01G269400 chr7B 735307703 735308274 571 True 623 623 86.50500 2028 2598 1 chr7B.!!$R1 570
4 TraesCS3A01G269400 chr7B 735806892 735807460 568 False 623 623 86.60900 2028 2595 1 chr7B.!!$F1 567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
931 1139 0.616111 AGCCTCTGTGATTCGTCCCT 60.616 55.0 0.0 0.0 0.0 4.20 F
1537 1761 0.240945 CTGAATTTGGGTGGCGTGTC 59.759 55.0 0.0 0.0 0.0 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2358 2610 0.389391 ACCCTGTCTGGCGATAATCG 59.611 55.0 0.0 0.0 43.89 3.34 R
3522 3807 0.169009 GCGATCAACAGTCCAAAGGC 59.831 55.0 0.0 0.0 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
124 156 7.877003 TCGCAAGATAAAGAAAATACAAACCA 58.123 30.769 0.00 0.00 45.01 3.67
125 157 8.353684 TCGCAAGATAAAGAAAATACAAACCAA 58.646 29.630 0.00 0.00 45.01 3.67
126 158 8.638565 CGCAAGATAAAGAAAATACAAACCAAG 58.361 33.333 0.00 0.00 43.02 3.61
127 159 9.476202 GCAAGATAAAGAAAATACAAACCAAGT 57.524 29.630 0.00 0.00 0.00 3.16
142 174 8.865590 ACAAACCAAGTTATTTATGTGTTGAC 57.134 30.769 0.00 0.00 0.00 3.18
146 178 6.208599 ACCAAGTTATTTATGTGTTGACCCAG 59.791 38.462 0.00 0.00 0.00 4.45
148 180 6.134535 AGTTATTTATGTGTTGACCCAGGA 57.865 37.500 0.00 0.00 0.00 3.86
151 183 7.993183 AGTTATTTATGTGTTGACCCAGGATAG 59.007 37.037 0.00 0.00 0.00 2.08
196 249 2.733593 GCCACGATCCGCCGATAC 60.734 66.667 0.00 0.00 0.00 2.24
217 270 2.667473 ACAGCGCTAGTTAATTCCGT 57.333 45.000 10.99 0.00 0.00 4.69
218 271 3.788333 ACAGCGCTAGTTAATTCCGTA 57.212 42.857 10.99 0.00 0.00 4.02
404 457 8.782144 CAAGCTTTTTCTTCTCTCATTTCTACT 58.218 33.333 0.00 0.00 0.00 2.57
481 680 6.092670 AGTCAAACCAAAGTGTATCATGATCG 59.907 38.462 12.53 0.00 0.00 3.69
506 705 0.686789 GGGCCAAAGTCAAATTGCCT 59.313 50.000 4.39 0.00 0.00 4.75
507 706 1.072173 GGGCCAAAGTCAAATTGCCTT 59.928 47.619 4.39 0.00 0.00 4.35
508 707 2.145536 GGCCAAAGTCAAATTGCCTTG 58.854 47.619 0.00 0.00 0.00 3.61
509 708 1.532437 GCCAAAGTCAAATTGCCTTGC 59.468 47.619 0.00 0.00 0.00 4.01
510 709 2.145536 CCAAAGTCAAATTGCCTTGCC 58.854 47.619 0.00 0.00 0.00 4.52
610 810 3.230743 AGTCAACAACAACACCAAAGC 57.769 42.857 0.00 0.00 0.00 3.51
631 831 4.271291 AGCGAAGAGAATAATTTTCGGCTC 59.729 41.667 9.12 0.00 41.81 4.70
632 832 4.034048 GCGAAGAGAATAATTTTCGGCTCA 59.966 41.667 9.12 0.00 41.81 4.26
637 837 8.748380 AAGAGAATAATTTTCGGCTCAAAAAG 57.252 30.769 0.00 0.00 0.00 2.27
642 842 9.191995 GAATAATTTTCGGCTCAAAAAGAAAGA 57.808 29.630 0.00 0.00 34.61 2.52
643 843 9.541143 AATAATTTTCGGCTCAAAAAGAAAGAA 57.459 25.926 0.00 0.00 34.61 2.52
644 844 7.468922 AATTTTCGGCTCAAAAAGAAAGAAG 57.531 32.000 0.00 0.00 34.61 2.85
646 846 5.424121 TTCGGCTCAAAAAGAAAGAAGAG 57.576 39.130 0.00 0.00 0.00 2.85
647 847 4.703897 TCGGCTCAAAAAGAAAGAAGAGA 58.296 39.130 0.00 0.00 0.00 3.10
649 849 5.765182 TCGGCTCAAAAAGAAAGAAGAGAAT 59.235 36.000 0.00 0.00 0.00 2.40
650 850 6.934645 TCGGCTCAAAAAGAAAGAAGAGAATA 59.065 34.615 0.00 0.00 0.00 1.75
651 851 7.444183 TCGGCTCAAAAAGAAAGAAGAGAATAA 59.556 33.333 0.00 0.00 0.00 1.40
693 894 1.338769 ACGAATAGAGCCGTTGCCTTT 60.339 47.619 0.00 0.00 38.69 3.11
694 895 2.093869 ACGAATAGAGCCGTTGCCTTTA 60.094 45.455 0.00 0.00 38.69 1.85
695 896 2.540101 CGAATAGAGCCGTTGCCTTTAG 59.460 50.000 0.00 0.00 38.69 1.85
773 974 3.496870 GCTTCTGGTGAGAAAAAGAGGGA 60.497 47.826 0.00 0.00 37.77 4.20
899 1105 1.607628 GCTGCTCCAATCCATCATCAC 59.392 52.381 0.00 0.00 0.00 3.06
900 1106 2.748798 GCTGCTCCAATCCATCATCACT 60.749 50.000 0.00 0.00 0.00 3.41
901 1107 3.495629 GCTGCTCCAATCCATCATCACTA 60.496 47.826 0.00 0.00 0.00 2.74
906 1112 6.002704 GCTCCAATCCATCATCACTAAATCT 58.997 40.000 0.00 0.00 0.00 2.40
919 1125 5.240891 TCACTAAATCTGTTCAAGCCTCTG 58.759 41.667 0.00 0.00 0.00 3.35
920 1126 4.999950 CACTAAATCTGTTCAAGCCTCTGT 59.000 41.667 0.00 0.00 0.00 3.41
921 1127 4.999950 ACTAAATCTGTTCAAGCCTCTGTG 59.000 41.667 0.00 0.00 0.00 3.66
922 1128 3.777106 AATCTGTTCAAGCCTCTGTGA 57.223 42.857 0.00 0.00 0.00 3.58
923 1129 3.996921 ATCTGTTCAAGCCTCTGTGAT 57.003 42.857 0.00 0.00 0.00 3.06
925 1131 3.668447 TCTGTTCAAGCCTCTGTGATTC 58.332 45.455 0.00 0.00 0.00 2.52
927 1133 2.224281 TGTTCAAGCCTCTGTGATTCGT 60.224 45.455 0.00 0.00 0.00 3.85
928 1134 2.370281 TCAAGCCTCTGTGATTCGTC 57.630 50.000 0.00 0.00 0.00 4.20
931 1139 0.616111 AGCCTCTGTGATTCGTCCCT 60.616 55.000 0.00 0.00 0.00 4.20
1150 1358 1.374758 CGGCACTTCCAGGTCTGTC 60.375 63.158 0.00 0.00 34.01 3.51
1161 1369 0.616111 AGGTCTGTCGAATCCTGCCT 60.616 55.000 0.00 0.00 0.00 4.75
1164 1372 2.427506 GTCTGTCGAATCCTGCCTTTT 58.572 47.619 0.00 0.00 0.00 2.27
1180 1388 8.835439 TCCTGCCTTTTAATTTCAACAATTTTC 58.165 29.630 0.00 0.00 0.00 2.29
1237 1447 5.914898 ATTTTCAGTATGTAAACCCTGCC 57.085 39.130 0.00 0.00 38.18 4.85
1264 1474 3.065371 GCGTCTGATTAAATTGACAGGGG 59.935 47.826 0.00 0.00 0.00 4.79
1265 1475 4.513442 CGTCTGATTAAATTGACAGGGGA 58.487 43.478 0.00 0.00 0.00 4.81
1340 1552 3.482436 ACAACAGGCGAATAACCTTCAA 58.518 40.909 0.00 0.00 34.42 2.69
1459 1680 4.702131 CCCTTTCATTTCACTAGGTTCAGG 59.298 45.833 0.00 0.00 0.00 3.86
1473 1694 2.167487 GGTTCAGGTTGGCAACTTTCAA 59.833 45.455 27.77 13.70 37.61 2.69
1474 1695 3.368948 GGTTCAGGTTGGCAACTTTCAAA 60.369 43.478 27.77 12.71 37.61 2.69
1475 1696 4.441792 GTTCAGGTTGGCAACTTTCAAAT 58.558 39.130 27.77 5.01 37.61 2.32
1504 1728 0.823356 TGTGAACAAGCCCCTGAAGC 60.823 55.000 0.00 0.00 0.00 3.86
1537 1761 0.240945 CTGAATTTGGGTGGCGTGTC 59.759 55.000 0.00 0.00 0.00 3.67
1741 1965 3.500654 GCCTCCTCTACCTTAGCCTCATA 60.501 52.174 0.00 0.00 0.00 2.15
1779 2003 1.937899 CCCTTATTTCACCGTAAGCCG 59.062 52.381 0.00 0.00 0.00 5.52
1848 2072 6.040209 AGCTATCTAAGAAGCCAGATGATG 57.960 41.667 0.00 0.00 39.64 3.07
1953 2177 4.254709 TGCCTGCTGGTTCTGCGT 62.255 61.111 11.69 0.00 35.27 5.24
2053 2277 3.636153 AAGCAGTCCTTATTCCTGACC 57.364 47.619 0.00 0.00 30.18 4.02
2210 2453 8.180365 TGCACGGCATTTTCTTATGGTACAAA 62.180 38.462 0.00 0.00 35.76 2.83
2251 2503 5.243507 TGAACTGTGATAATGCCATTTGTGT 59.756 36.000 0.00 0.00 0.00 3.72
2252 2504 5.063180 ACTGTGATAATGCCATTTGTGTG 57.937 39.130 0.00 0.00 0.00 3.82
2358 2610 6.582636 TCTTCATGTACATTGGGTGAGTATC 58.417 40.000 5.37 0.00 0.00 2.24
2383 2635 1.180456 TCGCCAGACAGGGTCGTTAA 61.180 55.000 0.00 0.00 37.67 2.01
2386 2638 2.433436 GCCAGACAGGGTCGTTAAAAT 58.567 47.619 0.00 0.00 37.67 1.82
2391 2643 4.755123 CAGACAGGGTCGTTAAAATCAAGT 59.245 41.667 0.00 0.00 37.67 3.16
2396 2648 6.264518 ACAGGGTCGTTAAAATCAAGTGAAAT 59.735 34.615 0.00 0.00 0.00 2.17
2433 2685 8.587608 GCTGAAATGGGATATGAATTCCAAATA 58.412 33.333 2.27 0.00 44.40 1.40
2661 2913 1.153568 CGCAGCCGATTTCAGAGGA 60.154 57.895 0.00 0.00 36.29 3.71
2720 2972 6.801367 CAACACTGCACATATTATTTCAGC 57.199 37.500 0.00 0.00 0.00 4.26
2766 3018 5.244785 AGAACGTTATGATCGCAGAGTTA 57.755 39.130 0.00 0.00 43.63 2.24
2919 3171 3.565902 GGTTTCAGTTGAAGGAGGACAAG 59.434 47.826 0.00 0.00 35.21 3.16
3025 3277 4.381932 GGGTTGCAACAGAGAAATATTGGG 60.382 45.833 29.55 0.00 0.00 4.12
3045 3297 4.135153 CCACGGCGCAGTAGCTCT 62.135 66.667 14.13 0.00 39.10 4.09
3046 3298 2.580867 CACGGCGCAGTAGCTCTC 60.581 66.667 14.13 0.00 39.10 3.20
3064 3316 4.158764 GCTCTCTGTTAGCACTAGGAAAGA 59.841 45.833 0.00 0.00 39.83 2.52
3065 3317 5.336849 GCTCTCTGTTAGCACTAGGAAAGAA 60.337 44.000 0.00 0.00 39.83 2.52
3174 3458 2.989840 CGTTCTTCTCCAAGTACAGCAG 59.010 50.000 0.00 0.00 31.06 4.24
3213 3497 4.361451 AGACACGATCCAAAATGAATGC 57.639 40.909 0.00 0.00 0.00 3.56
3295 3579 2.482333 CCCGTTTCGGCACCAAACA 61.482 57.895 2.41 0.00 46.86 2.83
3305 3589 2.114411 ACCAAACATCCGGCGGTT 59.886 55.556 27.32 15.85 0.00 4.44
3319 3603 4.643387 GGTTGGGCTCGGCACTGT 62.643 66.667 0.00 0.00 30.56 3.55
3340 3624 1.607148 CCGGACAGAAAACTTTGACCC 59.393 52.381 0.00 0.00 0.00 4.46
3341 3625 2.294074 CGGACAGAAAACTTTGACCCA 58.706 47.619 0.00 0.00 0.00 4.51
3342 3626 2.685897 CGGACAGAAAACTTTGACCCAA 59.314 45.455 0.00 0.00 0.00 4.12
3352 3636 1.956477 CTTTGACCCAACAAGACCTGG 59.044 52.381 0.00 0.00 0.00 4.45
3362 3646 0.595095 CAAGACCTGGCAAACTCAGC 59.405 55.000 0.00 0.00 0.00 4.26
3427 3712 2.899906 TGTGGGTTGGATATAGGGGA 57.100 50.000 0.00 0.00 0.00 4.81
3429 3714 1.351350 GTGGGTTGGATATAGGGGAGC 59.649 57.143 0.00 0.00 0.00 4.70
3430 3715 1.225694 TGGGTTGGATATAGGGGAGCT 59.774 52.381 0.00 0.00 0.00 4.09
3431 3716 1.909986 GGGTTGGATATAGGGGAGCTC 59.090 57.143 4.71 4.71 0.00 4.09
3463 3748 2.678580 TGTCGGATCGGACAGGCA 60.679 61.111 26.87 9.17 41.76 4.75
3467 3752 2.721167 CGGATCGGACAGGCAGGAA 61.721 63.158 0.00 0.00 0.00 3.36
3469 3754 1.153349 GATCGGACAGGCAGGAACC 60.153 63.158 0.00 0.00 0.00 3.62
3473 3758 1.026718 CGGACAGGCAGGAACCATTC 61.027 60.000 0.00 0.00 0.00 2.67
3489 3774 7.830099 GAACCATTCCAAATCCATTAGAGAT 57.170 36.000 0.00 0.00 0.00 2.75
3490 3775 7.830099 AACCATTCCAAATCCATTAGAGATC 57.170 36.000 0.00 0.00 0.00 2.75
3491 3776 6.914665 ACCATTCCAAATCCATTAGAGATCA 58.085 36.000 0.00 0.00 0.00 2.92
3492 3777 7.356680 ACCATTCCAAATCCATTAGAGATCAA 58.643 34.615 0.00 0.00 0.00 2.57
3493 3778 7.840716 ACCATTCCAAATCCATTAGAGATCAAA 59.159 33.333 0.00 0.00 0.00 2.69
3494 3779 8.698210 CCATTCCAAATCCATTAGAGATCAAAA 58.302 33.333 0.00 0.00 0.00 2.44
3497 3782 9.705103 TTCCAAATCCATTAGAGATCAAAATCT 57.295 29.630 0.00 0.00 45.16 2.40
3498 3783 9.705103 TCCAAATCCATTAGAGATCAAAATCTT 57.295 29.630 0.00 0.00 42.46 2.40
3499 3784 9.962783 CCAAATCCATTAGAGATCAAAATCTTC 57.037 33.333 0.00 0.00 42.46 2.87
3510 3795 8.658619 AGAGATCAAAATCTTCATATGGCTAGT 58.341 33.333 2.13 0.00 42.46 2.57
3511 3796 8.618702 AGATCAAAATCTTCATATGGCTAGTG 57.381 34.615 2.13 0.00 39.27 2.74
3512 3797 6.624352 TCAAAATCTTCATATGGCTAGTGC 57.376 37.500 2.13 0.00 38.76 4.40
3513 3798 6.359804 TCAAAATCTTCATATGGCTAGTGCT 58.640 36.000 2.13 0.00 39.59 4.40
3514 3799 6.830324 TCAAAATCTTCATATGGCTAGTGCTT 59.170 34.615 2.13 0.00 39.59 3.91
3515 3800 6.874288 AAATCTTCATATGGCTAGTGCTTC 57.126 37.500 2.13 0.00 39.59 3.86
3516 3801 5.557576 ATCTTCATATGGCTAGTGCTTCA 57.442 39.130 2.13 0.00 39.59 3.02
3517 3802 4.697514 TCTTCATATGGCTAGTGCTTCAC 58.302 43.478 2.13 0.00 39.59 3.18
3518 3803 4.162131 TCTTCATATGGCTAGTGCTTCACA 59.838 41.667 2.13 0.00 36.74 3.58
3519 3804 4.486125 TCATATGGCTAGTGCTTCACAA 57.514 40.909 2.13 0.00 36.74 3.33
3520 3805 5.039920 TCATATGGCTAGTGCTTCACAAT 57.960 39.130 2.13 0.00 36.74 2.71
3521 3806 5.059161 TCATATGGCTAGTGCTTCACAATC 58.941 41.667 2.13 0.00 36.74 2.67
3522 3807 1.725641 TGGCTAGTGCTTCACAATCG 58.274 50.000 0.00 0.00 36.74 3.34
3523 3808 0.375106 GGCTAGTGCTTCACAATCGC 59.625 55.000 0.00 0.00 36.74 4.58
3524 3809 0.375106 GCTAGTGCTTCACAATCGCC 59.625 55.000 0.00 0.00 36.74 5.54
3525 3810 2.009042 GCTAGTGCTTCACAATCGCCT 61.009 52.381 0.00 0.00 36.74 5.52
3526 3811 2.350522 CTAGTGCTTCACAATCGCCTT 58.649 47.619 0.00 0.00 36.74 4.35
3527 3812 1.609208 AGTGCTTCACAATCGCCTTT 58.391 45.000 0.00 0.00 36.74 3.11
3528 3813 1.267806 AGTGCTTCACAATCGCCTTTG 59.732 47.619 0.00 0.00 36.74 2.77
3529 3814 0.597568 TGCTTCACAATCGCCTTTGG 59.402 50.000 0.00 0.00 0.00 3.28
3530 3815 0.881118 GCTTCACAATCGCCTTTGGA 59.119 50.000 0.00 0.00 0.00 3.53
3531 3816 1.401539 GCTTCACAATCGCCTTTGGAC 60.402 52.381 0.00 0.00 0.00 4.02
3532 3817 2.154462 CTTCACAATCGCCTTTGGACT 58.846 47.619 0.00 0.00 0.00 3.85
3533 3818 1.522668 TCACAATCGCCTTTGGACTG 58.477 50.000 0.00 0.00 0.00 3.51
3534 3819 1.202758 TCACAATCGCCTTTGGACTGT 60.203 47.619 0.00 0.00 0.00 3.55
3535 3820 1.608590 CACAATCGCCTTTGGACTGTT 59.391 47.619 0.00 0.00 0.00 3.16
3536 3821 1.608590 ACAATCGCCTTTGGACTGTTG 59.391 47.619 0.00 0.00 0.00 3.33
3537 3822 1.879380 CAATCGCCTTTGGACTGTTGA 59.121 47.619 0.00 0.00 0.00 3.18
3538 3823 2.489329 CAATCGCCTTTGGACTGTTGAT 59.511 45.455 0.00 0.00 0.00 2.57
3539 3824 1.808411 TCGCCTTTGGACTGTTGATC 58.192 50.000 0.00 0.00 0.00 2.92
3540 3825 0.443869 CGCCTTTGGACTGTTGATCG 59.556 55.000 0.00 0.00 0.00 3.69
3541 3826 0.169009 GCCTTTGGACTGTTGATCGC 59.831 55.000 0.00 0.00 0.00 4.58
3542 3827 0.804989 CCTTTGGACTGTTGATCGCC 59.195 55.000 0.00 0.00 0.00 5.54
3543 3828 1.522668 CTTTGGACTGTTGATCGCCA 58.477 50.000 0.00 0.00 0.00 5.69
3544 3829 1.466167 CTTTGGACTGTTGATCGCCAG 59.534 52.381 9.27 9.27 34.82 4.85
3545 3830 0.321564 TTGGACTGTTGATCGCCAGG 60.322 55.000 13.97 0.00 32.90 4.45
3546 3831 2.109126 GGACTGTTGATCGCCAGGC 61.109 63.158 0.00 0.00 35.90 4.85
3560 3845 4.087892 AGGCGGCAACTCGAGCAT 62.088 61.111 13.61 0.00 0.00 3.79
3561 3846 3.567797 GGCGGCAACTCGAGCATC 61.568 66.667 13.61 0.76 0.00 3.91
3562 3847 3.567797 GCGGCAACTCGAGCATCC 61.568 66.667 13.61 9.75 0.00 3.51
3563 3848 2.892425 CGGCAACTCGAGCATCCC 60.892 66.667 13.61 7.12 0.00 3.85
3564 3849 2.892425 GGCAACTCGAGCATCCCG 60.892 66.667 13.61 0.00 0.00 5.14
3565 3850 2.184322 GCAACTCGAGCATCCCGA 59.816 61.111 13.61 0.00 34.61 5.14
3569 3854 3.201494 CTCGAGCATCCCGAGTGT 58.799 61.111 0.00 0.00 45.89 3.55
3570 3855 1.513158 CTCGAGCATCCCGAGTGTT 59.487 57.895 0.00 0.00 45.89 3.32
3571 3856 0.803768 CTCGAGCATCCCGAGTGTTG 60.804 60.000 0.00 0.00 45.89 3.33
3572 3857 1.079819 CGAGCATCCCGAGTGTTGT 60.080 57.895 0.00 0.00 0.00 3.32
3573 3858 1.354337 CGAGCATCCCGAGTGTTGTG 61.354 60.000 0.00 0.00 0.00 3.33
3574 3859 0.320771 GAGCATCCCGAGTGTTGTGT 60.321 55.000 0.00 0.00 0.00 3.72
3575 3860 0.108585 AGCATCCCGAGTGTTGTGTT 59.891 50.000 0.00 0.00 0.00 3.32
3576 3861 0.517316 GCATCCCGAGTGTTGTGTTC 59.483 55.000 0.00 0.00 0.00 3.18
3577 3862 1.878102 GCATCCCGAGTGTTGTGTTCT 60.878 52.381 0.00 0.00 0.00 3.01
3578 3863 1.800586 CATCCCGAGTGTTGTGTTCTG 59.199 52.381 0.00 0.00 0.00 3.02
3579 3864 0.828022 TCCCGAGTGTTGTGTTCTGT 59.172 50.000 0.00 0.00 0.00 3.41
3580 3865 0.937304 CCCGAGTGTTGTGTTCTGTG 59.063 55.000 0.00 0.00 0.00 3.66
3581 3866 1.651987 CCGAGTGTTGTGTTCTGTGT 58.348 50.000 0.00 0.00 0.00 3.72
3582 3867 2.006888 CCGAGTGTTGTGTTCTGTGTT 58.993 47.619 0.00 0.00 0.00 3.32
3583 3868 2.223021 CCGAGTGTTGTGTTCTGTGTTG 60.223 50.000 0.00 0.00 0.00 3.33
3584 3869 2.785679 GAGTGTTGTGTTCTGTGTTGC 58.214 47.619 0.00 0.00 0.00 4.17
3585 3870 1.472480 AGTGTTGTGTTCTGTGTTGCC 59.528 47.619 0.00 0.00 0.00 4.52
3586 3871 1.201181 GTGTTGTGTTCTGTGTTGCCA 59.799 47.619 0.00 0.00 0.00 4.92
3587 3872 1.472082 TGTTGTGTTCTGTGTTGCCAG 59.528 47.619 0.00 0.00 0.00 4.85
3588 3873 1.102154 TTGTGTTCTGTGTTGCCAGG 58.898 50.000 0.00 0.00 33.14 4.45
3589 3874 0.254462 TGTGTTCTGTGTTGCCAGGA 59.746 50.000 0.00 0.00 33.14 3.86
3590 3875 0.947244 GTGTTCTGTGTTGCCAGGAG 59.053 55.000 0.00 0.00 33.14 3.69
3591 3876 0.179020 TGTTCTGTGTTGCCAGGAGG 60.179 55.000 0.00 0.00 38.23 4.30
3592 3877 0.108585 GTTCTGTGTTGCCAGGAGGA 59.891 55.000 0.00 0.00 36.89 3.71
3593 3878 0.397941 TTCTGTGTTGCCAGGAGGAG 59.602 55.000 0.00 0.00 36.89 3.69
3594 3879 1.002868 CTGTGTTGCCAGGAGGAGG 60.003 63.158 0.00 0.00 36.89 4.30
3595 3880 1.461268 TGTGTTGCCAGGAGGAGGA 60.461 57.895 0.00 0.00 36.89 3.71
3596 3881 1.059584 TGTGTTGCCAGGAGGAGGAA 61.060 55.000 0.00 0.00 36.89 3.36
3597 3882 0.322008 GTGTTGCCAGGAGGAGGAAG 60.322 60.000 0.00 0.00 36.89 3.46
3598 3883 0.473694 TGTTGCCAGGAGGAGGAAGA 60.474 55.000 0.00 0.00 36.89 2.87
3599 3884 0.915364 GTTGCCAGGAGGAGGAAGAT 59.085 55.000 0.00 0.00 36.89 2.40
3600 3885 1.283321 GTTGCCAGGAGGAGGAAGATT 59.717 52.381 0.00 0.00 36.89 2.40
3601 3886 1.673767 TGCCAGGAGGAGGAAGATTT 58.326 50.000 0.00 0.00 36.89 2.17
3602 3887 2.845659 TGCCAGGAGGAGGAAGATTTA 58.154 47.619 0.00 0.00 36.89 1.40
3603 3888 3.189606 TGCCAGGAGGAGGAAGATTTAA 58.810 45.455 0.00 0.00 36.89 1.52
3604 3889 3.591527 TGCCAGGAGGAGGAAGATTTAAA 59.408 43.478 0.00 0.00 36.89 1.52
3605 3890 4.230502 TGCCAGGAGGAGGAAGATTTAAAT 59.769 41.667 0.00 0.00 36.89 1.40
3606 3891 4.824537 GCCAGGAGGAGGAAGATTTAAATC 59.175 45.833 18.70 18.70 36.89 2.17
3607 3892 5.632427 GCCAGGAGGAGGAAGATTTAAATCA 60.632 44.000 26.02 0.00 35.89 2.57
3608 3893 5.825151 CCAGGAGGAGGAAGATTTAAATCAC 59.175 44.000 26.02 19.15 35.89 3.06
3609 3894 6.418101 CAGGAGGAGGAAGATTTAAATCACA 58.582 40.000 26.02 0.00 37.89 3.58
3610 3895 7.059156 CAGGAGGAGGAAGATTTAAATCACAT 58.941 38.462 26.02 17.86 37.89 3.21
3611 3896 7.013083 CAGGAGGAGGAAGATTTAAATCACATG 59.987 40.741 26.02 12.15 37.89 3.21
3612 3897 6.238869 GGAGGAGGAAGATTTAAATCACATGC 60.239 42.308 26.02 20.79 37.89 4.06
3613 3898 6.430007 AGGAGGAAGATTTAAATCACATGCT 58.570 36.000 26.02 22.23 37.89 3.79
3614 3899 6.545298 AGGAGGAAGATTTAAATCACATGCTC 59.455 38.462 26.02 25.51 37.89 4.26
3615 3900 6.238869 GGAGGAAGATTTAAATCACATGCTCC 60.239 42.308 30.42 30.42 41.33 4.70
3616 3901 6.430007 AGGAAGATTTAAATCACATGCTCCT 58.570 36.000 26.02 20.88 37.89 3.69
3617 3902 6.545298 AGGAAGATTTAAATCACATGCTCCTC 59.455 38.462 26.02 10.22 37.89 3.71
3618 3903 6.319658 GGAAGATTTAAATCACATGCTCCTCA 59.680 38.462 26.02 0.00 37.89 3.86
3619 3904 6.939132 AGATTTAAATCACATGCTCCTCAG 57.061 37.500 26.02 0.00 37.89 3.35
3620 3905 6.421485 AGATTTAAATCACATGCTCCTCAGT 58.579 36.000 26.02 1.71 37.89 3.41
3621 3906 6.888632 AGATTTAAATCACATGCTCCTCAGTT 59.111 34.615 26.02 1.13 37.89 3.16
3622 3907 5.885230 TTAAATCACATGCTCCTCAGTTG 57.115 39.130 0.00 0.00 0.00 3.16
3623 3908 1.747709 ATCACATGCTCCTCAGTTGC 58.252 50.000 0.00 0.00 0.00 4.17
3624 3909 0.689055 TCACATGCTCCTCAGTTGCT 59.311 50.000 0.00 0.00 0.00 3.91
3625 3910 1.085091 CACATGCTCCTCAGTTGCTC 58.915 55.000 0.00 0.00 0.00 4.26
3626 3911 0.035630 ACATGCTCCTCAGTTGCTCC 60.036 55.000 0.00 0.00 0.00 4.70
3627 3912 0.252479 CATGCTCCTCAGTTGCTCCT 59.748 55.000 0.00 0.00 0.00 3.69
3628 3913 0.990374 ATGCTCCTCAGTTGCTCCTT 59.010 50.000 0.00 0.00 0.00 3.36
3629 3914 0.322975 TGCTCCTCAGTTGCTCCTTC 59.677 55.000 0.00 0.00 0.00 3.46
3630 3915 0.739112 GCTCCTCAGTTGCTCCTTCG 60.739 60.000 0.00 0.00 0.00 3.79
3631 3916 0.739112 CTCCTCAGTTGCTCCTTCGC 60.739 60.000 0.00 0.00 0.00 4.70
3632 3917 1.188219 TCCTCAGTTGCTCCTTCGCT 61.188 55.000 0.00 0.00 0.00 4.93
3633 3918 0.532573 CCTCAGTTGCTCCTTCGCTA 59.467 55.000 0.00 0.00 0.00 4.26
3634 3919 1.470632 CCTCAGTTGCTCCTTCGCTAG 60.471 57.143 0.00 0.00 0.00 3.42
3635 3920 1.474478 CTCAGTTGCTCCTTCGCTAGA 59.526 52.381 0.00 0.00 0.00 2.43
3636 3921 1.474478 TCAGTTGCTCCTTCGCTAGAG 59.526 52.381 0.00 0.00 0.00 2.43
3637 3922 1.474478 CAGTTGCTCCTTCGCTAGAGA 59.526 52.381 0.00 0.00 31.43 3.10
3638 3923 2.100584 CAGTTGCTCCTTCGCTAGAGAT 59.899 50.000 0.00 0.00 31.43 2.75
3639 3924 2.763448 AGTTGCTCCTTCGCTAGAGATT 59.237 45.455 0.00 0.00 31.43 2.40
3640 3925 3.196685 AGTTGCTCCTTCGCTAGAGATTT 59.803 43.478 0.00 0.00 31.43 2.17
3641 3926 3.170791 TGCTCCTTCGCTAGAGATTTG 57.829 47.619 0.00 0.00 31.43 2.32
3642 3927 2.159043 TGCTCCTTCGCTAGAGATTTGG 60.159 50.000 0.00 1.04 31.43 3.28
3643 3928 2.159028 GCTCCTTCGCTAGAGATTTGGT 60.159 50.000 0.00 0.00 31.43 3.67
3644 3929 3.068307 GCTCCTTCGCTAGAGATTTGGTA 59.932 47.826 0.00 0.00 31.43 3.25
3645 3930 4.612943 CTCCTTCGCTAGAGATTTGGTAC 58.387 47.826 0.00 0.00 31.43 3.34
3646 3931 4.021229 TCCTTCGCTAGAGATTTGGTACA 58.979 43.478 0.00 0.00 0.00 2.90
3647 3932 4.098044 TCCTTCGCTAGAGATTTGGTACAG 59.902 45.833 0.00 0.00 42.39 2.74
3648 3933 3.438297 TCGCTAGAGATTTGGTACAGC 57.562 47.619 0.00 0.00 42.39 4.40
3649 3934 2.120232 CGCTAGAGATTTGGTACAGCG 58.880 52.381 4.40 4.40 42.39 5.18
3650 3935 2.479730 CGCTAGAGATTTGGTACAGCGT 60.480 50.000 9.51 0.00 43.84 5.07
3651 3936 3.522553 GCTAGAGATTTGGTACAGCGTT 58.477 45.455 0.00 0.00 42.39 4.84
3652 3937 3.552294 GCTAGAGATTTGGTACAGCGTTC 59.448 47.826 0.00 0.00 42.39 3.95
3653 3938 3.963428 AGAGATTTGGTACAGCGTTCT 57.037 42.857 0.00 0.00 42.39 3.01
3654 3939 3.851098 AGAGATTTGGTACAGCGTTCTC 58.149 45.455 0.00 0.00 42.39 2.87
3655 3940 2.930682 GAGATTTGGTACAGCGTTCTCC 59.069 50.000 0.00 0.00 42.39 3.71
3656 3941 2.567615 AGATTTGGTACAGCGTTCTCCT 59.432 45.455 0.00 0.00 42.39 3.69
3657 3942 2.163818 TTTGGTACAGCGTTCTCCTG 57.836 50.000 0.00 0.00 42.39 3.86
3658 3943 0.320421 TTGGTACAGCGTTCTCCTGC 60.320 55.000 0.00 0.00 42.39 4.85
3659 3944 1.448013 GGTACAGCGTTCTCCTGCC 60.448 63.158 0.00 0.00 33.65 4.85
3660 3945 1.592223 GTACAGCGTTCTCCTGCCT 59.408 57.895 0.00 0.00 33.65 4.75
3661 3946 0.037232 GTACAGCGTTCTCCTGCCTT 60.037 55.000 0.00 0.00 33.65 4.35
3662 3947 0.037326 TACAGCGTTCTCCTGCCTTG 60.037 55.000 0.00 0.00 33.65 3.61
3663 3948 2.037136 CAGCGTTCTCCTGCCTTGG 61.037 63.158 0.00 0.00 0.00 3.61
3664 3949 3.435186 GCGTTCTCCTGCCTTGGC 61.435 66.667 4.43 4.43 0.00 4.52
3665 3950 3.121030 CGTTCTCCTGCCTTGGCG 61.121 66.667 7.18 2.22 0.00 5.69
3666 3951 2.032681 GTTCTCCTGCCTTGGCGT 59.967 61.111 7.18 0.00 0.00 5.68
3667 3952 2.035442 GTTCTCCTGCCTTGGCGTC 61.035 63.158 7.18 0.00 0.00 5.19
3668 3953 2.217038 TTCTCCTGCCTTGGCGTCT 61.217 57.895 7.18 0.00 0.00 4.18
3669 3954 2.125350 CTCCTGCCTTGGCGTCTC 60.125 66.667 7.18 0.00 0.00 3.36
3670 3955 3.672295 CTCCTGCCTTGGCGTCTCC 62.672 68.421 7.18 0.00 0.00 3.71
3671 3956 4.020617 CCTGCCTTGGCGTCTCCA 62.021 66.667 7.18 0.00 44.85 3.86
3672 3957 2.270205 CTGCCTTGGCGTCTCCAT 59.730 61.111 7.18 0.00 46.04 3.41
3673 3958 1.522092 CTGCCTTGGCGTCTCCATA 59.478 57.895 7.18 0.00 46.04 2.74
3674 3959 0.531532 CTGCCTTGGCGTCTCCATAG 60.532 60.000 7.18 0.00 46.04 2.23
3675 3960 1.227674 GCCTTGGCGTCTCCATAGG 60.228 63.158 0.00 5.98 46.04 2.57
3676 3961 1.972660 GCCTTGGCGTCTCCATAGGT 61.973 60.000 0.00 0.00 46.04 3.08
3677 3962 0.541863 CCTTGGCGTCTCCATAGGTT 59.458 55.000 0.00 0.00 46.04 3.50
3678 3963 1.065418 CCTTGGCGTCTCCATAGGTTT 60.065 52.381 0.00 0.00 46.04 3.27
3679 3964 2.169769 CCTTGGCGTCTCCATAGGTTTA 59.830 50.000 0.00 0.00 46.04 2.01
3680 3965 2.973694 TGGCGTCTCCATAGGTTTAC 57.026 50.000 0.00 0.00 40.72 2.01
3681 3966 1.135527 TGGCGTCTCCATAGGTTTACG 59.864 52.381 0.00 0.00 40.72 3.18
3683 3968 1.849097 CGTCTCCATAGGTTTACGCC 58.151 55.000 0.00 0.00 0.00 5.68
3684 3969 1.849097 GTCTCCATAGGTTTACGCCG 58.151 55.000 0.00 0.00 0.00 6.46
3685 3970 1.406539 GTCTCCATAGGTTTACGCCGA 59.593 52.381 0.00 0.00 0.00 5.54
3686 3971 1.406539 TCTCCATAGGTTTACGCCGAC 59.593 52.381 0.00 0.00 0.00 4.79
3687 3972 0.461135 TCCATAGGTTTACGCCGACC 59.539 55.000 0.00 0.00 36.15 4.79
3688 3973 0.531311 CCATAGGTTTACGCCGACCC 60.531 60.000 0.00 0.00 36.57 4.46
3689 3974 0.531311 CATAGGTTTACGCCGACCCC 60.531 60.000 0.00 0.00 36.57 4.95
3690 3975 2.019897 ATAGGTTTACGCCGACCCCG 62.020 60.000 0.00 0.00 36.57 5.73
3717 4002 3.604875 AAAATTCAGGCCTGAGCAATG 57.395 42.857 33.16 7.61 41.13 2.82
3718 4003 0.822164 AATTCAGGCCTGAGCAATGC 59.178 50.000 33.16 0.00 41.13 3.56
3719 4004 0.323999 ATTCAGGCCTGAGCAATGCA 60.324 50.000 33.16 18.80 41.13 3.96
3720 4005 0.540133 TTCAGGCCTGAGCAATGCAA 60.540 50.000 33.16 15.22 41.13 4.08
3721 4006 0.323999 TCAGGCCTGAGCAATGCAAT 60.324 50.000 32.00 0.00 42.56 3.56
3722 4007 0.535335 CAGGCCTGAGCAATGCAATT 59.465 50.000 29.88 0.00 42.56 2.32
3723 4008 1.066430 CAGGCCTGAGCAATGCAATTT 60.066 47.619 29.88 0.00 42.56 1.82
3724 4009 1.626825 AGGCCTGAGCAATGCAATTTT 59.373 42.857 3.11 0.00 42.56 1.82
3725 4010 2.039348 AGGCCTGAGCAATGCAATTTTT 59.961 40.909 3.11 0.00 42.56 1.94
3726 4011 2.160813 GGCCTGAGCAATGCAATTTTTG 59.839 45.455 8.35 0.00 42.56 2.44
3727 4012 2.160813 GCCTGAGCAATGCAATTTTTGG 59.839 45.455 8.35 0.75 39.53 3.28
3728 4013 3.404899 CCTGAGCAATGCAATTTTTGGT 58.595 40.909 8.35 2.28 31.22 3.67
3729 4014 3.187637 CCTGAGCAATGCAATTTTTGGTG 59.812 43.478 8.35 0.00 31.22 4.17
3730 4015 3.139850 TGAGCAATGCAATTTTTGGTGG 58.860 40.909 8.35 0.00 31.22 4.61
3731 4016 3.181457 TGAGCAATGCAATTTTTGGTGGA 60.181 39.130 8.35 0.00 31.22 4.02
3732 4017 3.814283 GAGCAATGCAATTTTTGGTGGAA 59.186 39.130 8.35 0.00 31.22 3.53
3733 4018 3.816523 AGCAATGCAATTTTTGGTGGAAG 59.183 39.130 8.35 0.00 31.22 3.46
3734 4019 3.814283 GCAATGCAATTTTTGGTGGAAGA 59.186 39.130 0.00 0.00 31.22 2.87
3735 4020 4.319694 GCAATGCAATTTTTGGTGGAAGAC 60.320 41.667 0.00 0.00 31.22 3.01
3736 4021 3.090952 TGCAATTTTTGGTGGAAGACG 57.909 42.857 0.00 0.00 0.00 4.18
3737 4022 2.428890 TGCAATTTTTGGTGGAAGACGT 59.571 40.909 0.00 0.00 0.00 4.34
3738 4023 3.632604 TGCAATTTTTGGTGGAAGACGTA 59.367 39.130 0.00 0.00 0.00 3.57
3739 4024 4.226761 GCAATTTTTGGTGGAAGACGTAG 58.773 43.478 0.00 0.00 0.00 3.51
3740 4025 4.794169 CAATTTTTGGTGGAAGACGTAGG 58.206 43.478 0.00 0.00 0.00 3.18
3741 4026 3.842007 TTTTTGGTGGAAGACGTAGGA 57.158 42.857 0.00 0.00 0.00 2.94
3742 4027 3.842007 TTTTGGTGGAAGACGTAGGAA 57.158 42.857 0.00 0.00 0.00 3.36
3743 4028 3.396260 TTTGGTGGAAGACGTAGGAAG 57.604 47.619 0.00 0.00 0.00 3.46
3744 4029 2.297698 TGGTGGAAGACGTAGGAAGA 57.702 50.000 0.00 0.00 0.00 2.87
3745 4030 2.816411 TGGTGGAAGACGTAGGAAGAT 58.184 47.619 0.00 0.00 0.00 2.40
3746 4031 3.972133 TGGTGGAAGACGTAGGAAGATA 58.028 45.455 0.00 0.00 0.00 1.98
3747 4032 4.346730 TGGTGGAAGACGTAGGAAGATAA 58.653 43.478 0.00 0.00 0.00 1.75
3748 4033 4.773674 TGGTGGAAGACGTAGGAAGATAAA 59.226 41.667 0.00 0.00 0.00 1.40
3749 4034 5.107824 GGTGGAAGACGTAGGAAGATAAAC 58.892 45.833 0.00 0.00 0.00 2.01
3750 4035 5.337009 GGTGGAAGACGTAGGAAGATAAACA 60.337 44.000 0.00 0.00 0.00 2.83
3751 4036 5.575995 GTGGAAGACGTAGGAAGATAAACAC 59.424 44.000 0.00 0.00 0.00 3.32
3752 4037 5.479375 TGGAAGACGTAGGAAGATAAACACT 59.521 40.000 0.00 0.00 0.00 3.55
3753 4038 6.035217 GGAAGACGTAGGAAGATAAACACTC 58.965 44.000 0.00 0.00 0.00 3.51
3754 4039 6.127675 GGAAGACGTAGGAAGATAAACACTCT 60.128 42.308 0.00 0.00 0.00 3.24
3755 4040 6.197364 AGACGTAGGAAGATAAACACTCTG 57.803 41.667 0.00 0.00 0.00 3.35
3756 4041 5.125739 AGACGTAGGAAGATAAACACTCTGG 59.874 44.000 0.00 0.00 0.00 3.86
3757 4042 4.771054 ACGTAGGAAGATAAACACTCTGGT 59.229 41.667 0.00 0.00 0.00 4.00
3758 4043 5.245526 ACGTAGGAAGATAAACACTCTGGTT 59.754 40.000 0.00 0.00 0.00 3.67
3759 4044 6.164176 CGTAGGAAGATAAACACTCTGGTTT 58.836 40.000 0.00 0.00 43.08 3.27
3760 4045 6.090898 CGTAGGAAGATAAACACTCTGGTTTG 59.909 42.308 0.00 0.00 40.91 2.93
3761 4046 4.762251 AGGAAGATAAACACTCTGGTTTGC 59.238 41.667 0.00 0.00 40.91 3.68
3762 4047 4.082733 GGAAGATAAACACTCTGGTTTGCC 60.083 45.833 0.00 0.00 40.91 4.52
3763 4048 4.373156 AGATAAACACTCTGGTTTGCCT 57.627 40.909 0.00 0.00 40.91 4.75
3764 4049 4.729868 AGATAAACACTCTGGTTTGCCTT 58.270 39.130 0.00 0.00 40.91 4.35
3765 4050 4.520492 AGATAAACACTCTGGTTTGCCTTG 59.480 41.667 0.00 0.00 40.91 3.61
3766 4051 2.143876 AACACTCTGGTTTGCCTTGT 57.856 45.000 0.00 0.00 35.27 3.16
3767 4052 1.392589 ACACTCTGGTTTGCCTTGTG 58.607 50.000 0.00 0.00 36.65 3.33
3768 4053 1.340991 ACACTCTGGTTTGCCTTGTGT 60.341 47.619 0.00 0.00 37.85 3.72
3769 4054 1.750778 CACTCTGGTTTGCCTTGTGTT 59.249 47.619 0.00 0.00 35.27 3.32
3770 4055 2.948979 CACTCTGGTTTGCCTTGTGTTA 59.051 45.455 0.00 0.00 35.27 2.41
3771 4056 2.949644 ACTCTGGTTTGCCTTGTGTTAC 59.050 45.455 0.00 0.00 35.27 2.50
3772 4057 1.944024 TCTGGTTTGCCTTGTGTTACG 59.056 47.619 0.00 0.00 35.27 3.18
3773 4058 0.382515 TGGTTTGCCTTGTGTTACGC 59.617 50.000 0.00 0.00 35.27 4.42
3774 4059 0.666374 GGTTTGCCTTGTGTTACGCT 59.334 50.000 0.00 0.00 0.00 5.07
3775 4060 1.599419 GGTTTGCCTTGTGTTACGCTG 60.599 52.381 0.00 0.00 0.00 5.18
3776 4061 0.030101 TTTGCCTTGTGTTACGCTGC 59.970 50.000 0.00 0.00 0.00 5.25
3777 4062 1.098129 TTGCCTTGTGTTACGCTGCA 61.098 50.000 0.00 1.19 0.00 4.41
3778 4063 0.888736 TGCCTTGTGTTACGCTGCAT 60.889 50.000 0.00 0.00 0.00 3.96
3779 4064 0.179189 GCCTTGTGTTACGCTGCATC 60.179 55.000 0.00 0.00 0.00 3.91
3780 4065 1.442769 CCTTGTGTTACGCTGCATCT 58.557 50.000 0.00 0.00 0.00 2.90
3781 4066 1.129251 CCTTGTGTTACGCTGCATCTG 59.871 52.381 0.00 0.00 0.00 2.90
3782 4067 1.129251 CTTGTGTTACGCTGCATCTGG 59.871 52.381 0.00 0.00 0.00 3.86
3783 4068 1.298157 TGTGTTACGCTGCATCTGGC 61.298 55.000 0.00 0.00 45.13 4.85
3784 4069 1.021390 GTGTTACGCTGCATCTGGCT 61.021 55.000 0.00 0.00 45.15 4.75
3785 4070 1.020861 TGTTACGCTGCATCTGGCTG 61.021 55.000 0.00 0.00 45.15 4.85
3786 4071 1.450134 TTACGCTGCATCTGGCTGG 60.450 57.895 0.00 0.00 45.15 4.85
3787 4072 1.898330 TTACGCTGCATCTGGCTGGA 61.898 55.000 0.00 0.00 45.15 3.86
3788 4073 1.898330 TACGCTGCATCTGGCTGGAA 61.898 55.000 0.00 0.00 45.15 3.53
3789 4074 2.758089 CGCTGCATCTGGCTGGAAC 61.758 63.158 0.00 0.00 45.15 3.62
3790 4075 2.758089 GCTGCATCTGGCTGGAACG 61.758 63.158 0.00 0.00 45.15 3.95
3791 4076 1.078918 CTGCATCTGGCTGGAACGA 60.079 57.895 0.00 0.00 45.15 3.85
3792 4077 0.674581 CTGCATCTGGCTGGAACGAA 60.675 55.000 0.00 0.00 45.15 3.85
3793 4078 0.250684 TGCATCTGGCTGGAACGAAA 60.251 50.000 0.00 0.00 45.15 3.46
3794 4079 0.169009 GCATCTGGCTGGAACGAAAC 59.831 55.000 0.00 0.00 40.25 2.78
3795 4080 1.522668 CATCTGGCTGGAACGAAACA 58.477 50.000 0.00 0.00 0.00 2.83
3796 4081 1.466167 CATCTGGCTGGAACGAAACAG 59.534 52.381 0.00 0.00 37.76 3.16
3800 4085 4.043168 CTGGAACGAAACAGCCGT 57.957 55.556 0.00 0.00 42.61 5.68
3801 4086 1.569493 CTGGAACGAAACAGCCGTG 59.431 57.895 0.00 0.00 40.44 4.94
3802 4087 1.153329 TGGAACGAAACAGCCGTGT 60.153 52.632 0.00 0.00 40.44 4.49
3812 4097 2.559998 ACAGCCGTGTTTTTGACAAG 57.440 45.000 0.00 0.00 40.65 3.16
3818 4103 3.684103 CGTGTTTTTGACAAGGTAGCA 57.316 42.857 0.00 0.00 40.65 3.49
3819 4104 4.022464 CGTGTTTTTGACAAGGTAGCAA 57.978 40.909 0.00 0.00 40.65 3.91
3820 4105 3.789224 CGTGTTTTTGACAAGGTAGCAAC 59.211 43.478 0.00 0.00 40.65 4.17
3821 4106 4.438200 CGTGTTTTTGACAAGGTAGCAACT 60.438 41.667 0.00 0.00 40.65 3.16
3822 4107 5.220700 CGTGTTTTTGACAAGGTAGCAACTA 60.221 40.000 0.00 0.00 40.65 2.24
3823 4108 6.512741 CGTGTTTTTGACAAGGTAGCAACTAT 60.513 38.462 0.00 0.00 40.65 2.12
3824 4109 6.636850 GTGTTTTTGACAAGGTAGCAACTATG 59.363 38.462 0.00 0.00 40.65 2.23
3825 4110 6.734597 TGTTTTTGACAAGGTAGCAACTATGC 60.735 38.462 0.00 0.00 43.63 3.14
3826 4111 9.547337 TGTTTTTGACAAGGTAGCAACTATGCC 62.547 40.741 0.00 0.00 44.04 4.40
3842 4127 3.620427 ATGCCTTACATGGTTACACGA 57.380 42.857 0.00 0.00 37.70 4.35
3843 4128 3.620427 TGCCTTACATGGTTACACGAT 57.380 42.857 0.00 0.00 0.00 3.73
3844 4129 3.266636 TGCCTTACATGGTTACACGATG 58.733 45.455 0.00 0.00 39.73 3.84
3845 4130 2.031683 GCCTTACATGGTTACACGATGC 59.968 50.000 0.00 0.00 37.77 3.91
3846 4131 3.266636 CCTTACATGGTTACACGATGCA 58.733 45.455 0.00 0.00 37.77 3.96
3847 4132 3.876914 CCTTACATGGTTACACGATGCAT 59.123 43.478 0.00 0.00 37.77 3.96
3848 4133 5.053811 CCTTACATGGTTACACGATGCATA 58.946 41.667 0.00 0.00 37.77 3.14
3849 4134 5.525745 CCTTACATGGTTACACGATGCATAA 59.474 40.000 0.00 0.00 37.77 1.90
3850 4135 6.037720 CCTTACATGGTTACACGATGCATAAA 59.962 38.462 0.00 0.00 37.77 1.40
3851 4136 7.255104 CCTTACATGGTTACACGATGCATAAAT 60.255 37.037 0.00 0.00 37.77 1.40
3852 4137 5.820131 ACATGGTTACACGATGCATAAATG 58.180 37.500 0.00 0.48 37.77 2.32
3853 4138 5.588246 ACATGGTTACACGATGCATAAATGA 59.412 36.000 0.00 0.00 37.77 2.57
3854 4139 6.094742 ACATGGTTACACGATGCATAAATGAA 59.905 34.615 0.00 0.00 37.77 2.57
3855 4140 6.117911 TGGTTACACGATGCATAAATGAAG 57.882 37.500 0.00 0.00 0.00 3.02
3856 4141 5.877564 TGGTTACACGATGCATAAATGAAGA 59.122 36.000 0.00 0.00 0.00 2.87
3857 4142 6.372937 TGGTTACACGATGCATAAATGAAGAA 59.627 34.615 0.00 0.00 0.00 2.52
3858 4143 7.066887 TGGTTACACGATGCATAAATGAAGAAT 59.933 33.333 0.00 0.00 0.00 2.40
3859 4144 7.915397 GGTTACACGATGCATAAATGAAGAATT 59.085 33.333 0.00 0.00 0.00 2.17
3874 4159 5.691508 GAAGAATTCAAATTGTGGATGCG 57.308 39.130 8.44 0.00 46.62 4.73
3875 4160 5.389859 AAGAATTCAAATTGTGGATGCGA 57.610 34.783 8.44 0.00 0.00 5.10
3876 4161 4.990257 AGAATTCAAATTGTGGATGCGAG 58.010 39.130 8.44 0.00 0.00 5.03
3877 4162 2.634982 TTCAAATTGTGGATGCGAGC 57.365 45.000 0.00 0.00 0.00 5.03
3878 4163 1.825090 TCAAATTGTGGATGCGAGCT 58.175 45.000 0.00 0.00 0.00 4.09
3879 4164 2.984562 TCAAATTGTGGATGCGAGCTA 58.015 42.857 0.00 0.00 0.00 3.32
3880 4165 3.342719 TCAAATTGTGGATGCGAGCTAA 58.657 40.909 0.00 0.00 0.00 3.09
3881 4166 3.374988 TCAAATTGTGGATGCGAGCTAAG 59.625 43.478 0.00 0.00 0.00 2.18
3882 4167 2.988010 ATTGTGGATGCGAGCTAAGA 57.012 45.000 0.00 0.00 0.00 2.10
3883 4168 2.988010 TTGTGGATGCGAGCTAAGAT 57.012 45.000 0.00 0.00 0.00 2.40
3884 4169 4.607293 ATTGTGGATGCGAGCTAAGATA 57.393 40.909 0.00 0.00 0.00 1.98
3885 4170 3.650070 TGTGGATGCGAGCTAAGATAG 57.350 47.619 0.00 0.00 0.00 2.08
3886 4171 2.297315 TGTGGATGCGAGCTAAGATAGG 59.703 50.000 0.00 0.00 0.00 2.57
3887 4172 2.297597 GTGGATGCGAGCTAAGATAGGT 59.702 50.000 0.00 0.00 39.61 3.08
3888 4173 2.297315 TGGATGCGAGCTAAGATAGGTG 59.703 50.000 0.00 0.00 36.51 4.00
3889 4174 2.353208 GGATGCGAGCTAAGATAGGTGG 60.353 54.545 0.00 0.00 36.51 4.61
3890 4175 1.040646 TGCGAGCTAAGATAGGTGGG 58.959 55.000 0.00 0.00 36.51 4.61
3891 4176 1.329256 GCGAGCTAAGATAGGTGGGA 58.671 55.000 0.00 0.00 36.51 4.37
3892 4177 1.896465 GCGAGCTAAGATAGGTGGGAT 59.104 52.381 0.00 0.00 36.51 3.85
3893 4178 3.090037 GCGAGCTAAGATAGGTGGGATA 58.910 50.000 0.00 0.00 36.51 2.59
3894 4179 3.129638 GCGAGCTAAGATAGGTGGGATAG 59.870 52.174 0.00 0.00 36.51 2.08
3895 4180 3.129638 CGAGCTAAGATAGGTGGGATAGC 59.870 52.174 0.00 0.00 36.51 2.97
3896 4181 3.093057 AGCTAAGATAGGTGGGATAGCG 58.907 50.000 0.00 0.00 40.40 4.26
3897 4182 3.090037 GCTAAGATAGGTGGGATAGCGA 58.910 50.000 0.00 0.00 0.00 4.93
3898 4183 3.129638 GCTAAGATAGGTGGGATAGCGAG 59.870 52.174 0.00 0.00 0.00 5.03
3899 4184 3.527507 AAGATAGGTGGGATAGCGAGA 57.472 47.619 0.00 0.00 0.00 4.04
3900 4185 3.080300 AGATAGGTGGGATAGCGAGAG 57.920 52.381 0.00 0.00 0.00 3.20
3901 4186 2.645297 AGATAGGTGGGATAGCGAGAGA 59.355 50.000 0.00 0.00 0.00 3.10
3902 4187 3.268334 AGATAGGTGGGATAGCGAGAGAT 59.732 47.826 0.00 0.00 0.00 2.75
3903 4188 1.626686 AGGTGGGATAGCGAGAGATG 58.373 55.000 0.00 0.00 0.00 2.90
3904 4189 1.133325 AGGTGGGATAGCGAGAGATGT 60.133 52.381 0.00 0.00 0.00 3.06
3905 4190 2.108425 AGGTGGGATAGCGAGAGATGTA 59.892 50.000 0.00 0.00 0.00 2.29
3906 4191 2.891580 GGTGGGATAGCGAGAGATGTAA 59.108 50.000 0.00 0.00 0.00 2.41
3907 4192 3.321111 GGTGGGATAGCGAGAGATGTAAA 59.679 47.826 0.00 0.00 0.00 2.01
3908 4193 4.551388 GTGGGATAGCGAGAGATGTAAAG 58.449 47.826 0.00 0.00 0.00 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
116 148 9.953697 GTCAACACATAAATAACTTGGTTTGTA 57.046 29.630 0.00 0.00 0.00 2.41
122 154 6.350110 CCTGGGTCAACACATAAATAACTTGG 60.350 42.308 0.00 0.00 0.00 3.61
123 155 6.432783 TCCTGGGTCAACACATAAATAACTTG 59.567 38.462 0.00 0.00 0.00 3.16
124 156 6.548321 TCCTGGGTCAACACATAAATAACTT 58.452 36.000 0.00 0.00 0.00 2.66
125 157 6.134535 TCCTGGGTCAACACATAAATAACT 57.865 37.500 0.00 0.00 0.00 2.24
126 158 7.255139 GCTATCCTGGGTCAACACATAAATAAC 60.255 40.741 0.00 0.00 0.00 1.89
127 159 6.770785 GCTATCCTGGGTCAACACATAAATAA 59.229 38.462 0.00 0.00 0.00 1.40
128 160 6.296026 GCTATCCTGGGTCAACACATAAATA 58.704 40.000 0.00 0.00 0.00 1.40
129 161 5.133221 GCTATCCTGGGTCAACACATAAAT 58.867 41.667 0.00 0.00 0.00 1.40
130 162 4.523083 GCTATCCTGGGTCAACACATAAA 58.477 43.478 0.00 0.00 0.00 1.40
131 163 3.118038 GGCTATCCTGGGTCAACACATAA 60.118 47.826 0.00 0.00 0.00 1.90
132 164 2.438021 GGCTATCCTGGGTCAACACATA 59.562 50.000 0.00 0.00 0.00 2.29
133 165 1.212935 GGCTATCCTGGGTCAACACAT 59.787 52.381 0.00 0.00 0.00 3.21
134 166 0.618458 GGCTATCCTGGGTCAACACA 59.382 55.000 0.00 0.00 0.00 3.72
135 167 0.107165 GGGCTATCCTGGGTCAACAC 60.107 60.000 0.00 0.00 0.00 3.32
136 168 0.548926 TGGGCTATCCTGGGTCAACA 60.549 55.000 0.00 0.00 36.20 3.33
137 169 0.846693 ATGGGCTATCCTGGGTCAAC 59.153 55.000 0.00 0.00 36.20 3.18
138 170 2.054799 GTATGGGCTATCCTGGGTCAA 58.945 52.381 0.00 0.00 36.20 3.18
139 171 1.061735 TGTATGGGCTATCCTGGGTCA 60.062 52.381 0.00 0.00 36.20 4.02
140 172 1.729586 TGTATGGGCTATCCTGGGTC 58.270 55.000 0.00 0.00 36.20 4.46
141 173 1.988107 CATGTATGGGCTATCCTGGGT 59.012 52.381 0.00 0.00 36.20 4.51
142 174 2.238144 CTCATGTATGGGCTATCCTGGG 59.762 54.545 0.00 0.00 36.20 4.45
196 249 3.703420 ACGGAATTAACTAGCGCTGTAG 58.297 45.455 22.90 13.53 0.00 2.74
217 270 2.349755 GGGTTCACGCCTTGCCTA 59.650 61.111 0.00 0.00 0.00 3.93
218 271 3.850098 CTGGGTTCACGCCTTGCCT 62.850 63.158 0.00 0.00 0.00 4.75
221 274 0.321564 TGATCTGGGTTCACGCCTTG 60.322 55.000 0.00 0.00 0.00 3.61
227 280 0.678048 GCCTGGTGATCTGGGTTCAC 60.678 60.000 0.00 0.00 42.20 3.18
230 283 1.918293 TCGCCTGGTGATCTGGGTT 60.918 57.895 5.70 0.00 35.30 4.11
481 680 1.408969 TTTGACTTTGGCCCAAGGAC 58.591 50.000 20.01 13.59 0.00 3.85
526 725 1.943730 TTGGCCCAAGGGTGTCAAGT 61.944 55.000 7.05 0.00 37.65 3.16
528 727 0.758685 CTTTGGCCCAAGGGTGTCAA 60.759 55.000 8.75 6.78 37.65 3.18
530 729 1.908299 CCTTTGGCCCAAGGGTGTC 60.908 63.158 25.09 0.00 36.12 3.67
533 732 0.545071 CATTCCTTTGGCCCAAGGGT 60.545 55.000 30.23 18.88 40.74 4.34
569 769 5.783111 ACTTGTGCCTGGAATAAAAACATC 58.217 37.500 0.00 0.00 0.00 3.06
610 810 5.718649 TGAGCCGAAAATTATTCTCTTCG 57.281 39.130 3.98 3.98 40.18 3.79
650 850 9.360093 TCGTGTCTCACAAATTAAACAAAATTT 57.640 25.926 1.00 0.00 39.14 1.82
651 851 8.918961 TCGTGTCTCACAAATTAAACAAAATT 57.081 26.923 1.00 0.00 33.40 1.82
695 896 9.334947 GGTTACTTATTGGAGGGAAAATACTAC 57.665 37.037 0.00 0.00 0.00 2.73
717 918 5.716703 GTGTAGGAGTAGTTAGGGTTGGTTA 59.283 44.000 0.00 0.00 0.00 2.85
773 974 2.995574 AAGGGGAGTACGTGCGCT 60.996 61.111 9.73 0.00 42.01 5.92
899 1105 5.240891 TCACAGAGGCTTGAACAGATTTAG 58.759 41.667 0.00 0.00 0.00 1.85
900 1106 5.227569 TCACAGAGGCTTGAACAGATTTA 57.772 39.130 0.00 0.00 0.00 1.40
901 1107 4.090761 TCACAGAGGCTTGAACAGATTT 57.909 40.909 0.00 0.00 0.00 2.17
906 1112 2.224281 ACGAATCACAGAGGCTTGAACA 60.224 45.455 0.00 0.00 0.00 3.18
919 1125 1.486726 AGATGGGAAGGGACGAATCAC 59.513 52.381 0.00 0.00 0.00 3.06
920 1126 1.879575 AGATGGGAAGGGACGAATCA 58.120 50.000 0.00 0.00 0.00 2.57
921 1127 2.803492 CGAAGATGGGAAGGGACGAATC 60.803 54.545 0.00 0.00 0.00 2.52
922 1128 1.139058 CGAAGATGGGAAGGGACGAAT 59.861 52.381 0.00 0.00 0.00 3.34
923 1129 0.535335 CGAAGATGGGAAGGGACGAA 59.465 55.000 0.00 0.00 0.00 3.85
925 1131 1.521681 GCGAAGATGGGAAGGGACG 60.522 63.158 0.00 0.00 0.00 4.79
927 1133 1.204786 TTGGCGAAGATGGGAAGGGA 61.205 55.000 0.00 0.00 0.00 4.20
928 1134 0.749454 CTTGGCGAAGATGGGAAGGG 60.749 60.000 1.62 0.00 0.00 3.95
931 1139 1.839994 AGATCTTGGCGAAGATGGGAA 59.160 47.619 26.26 0.00 47.00 3.97
1150 1358 6.155827 TGTTGAAATTAAAAGGCAGGATTCG 58.844 36.000 0.00 0.00 0.00 3.34
1237 1447 4.155826 TGTCAATTTAATCAGACGCCCAAG 59.844 41.667 6.18 0.00 33.83 3.61
1264 1474 6.483687 ACAACGGAATTACGAAAGCAATATC 58.516 36.000 18.96 0.00 37.61 1.63
1265 1475 6.431198 ACAACGGAATTACGAAAGCAATAT 57.569 33.333 18.96 0.00 37.61 1.28
1340 1552 0.259938 GAACCAAGGCCAGGATCCAT 59.740 55.000 20.01 0.00 0.00 3.41
1432 1645 6.836527 TGAACCTAGTGAAATGAAAGGGAAAA 59.163 34.615 0.00 0.00 0.00 2.29
1444 1657 2.173782 TGCCAACCTGAACCTAGTGAAA 59.826 45.455 0.00 0.00 0.00 2.69
1504 1728 2.110901 ATTCAGACCTTCTGCAGCAG 57.889 50.000 17.10 17.10 43.95 4.24
1537 1761 0.797249 GTACGCACGAGTACCTGCAG 60.797 60.000 6.78 6.78 40.65 4.41
1779 2003 6.654793 AATAAATCGCAGAAGAAGACAGAC 57.345 37.500 0.00 0.00 43.58 3.51
1848 2072 4.516698 TCCAAAATCAGAGCACAGTTTCTC 59.483 41.667 0.00 0.00 0.00 2.87
1935 2159 3.730761 CGCAGAACCAGCAGGCAC 61.731 66.667 0.00 0.00 39.06 5.01
1953 2177 3.002791 CTCCACGAAATTAAGCTGCTCA 58.997 45.455 1.00 0.00 0.00 4.26
2193 2436 8.458573 TGTCACTGTTTGTACCATAAGAAAAT 57.541 30.769 0.00 0.00 0.00 1.82
2210 2453 5.880332 ACAGTTCAGTAAACATTGTCACTGT 59.120 36.000 21.58 13.72 40.56 3.55
2217 2460 7.485913 GGCATTATCACAGTTCAGTAAACATTG 59.514 37.037 0.00 0.00 40.56 2.82
2218 2461 7.176515 TGGCATTATCACAGTTCAGTAAACATT 59.823 33.333 0.00 0.00 40.56 2.71
2219 2462 6.658816 TGGCATTATCACAGTTCAGTAAACAT 59.341 34.615 0.00 0.00 40.56 2.71
2220 2463 6.000840 TGGCATTATCACAGTTCAGTAAACA 58.999 36.000 0.00 0.00 40.56 2.83
2221 2464 6.494893 TGGCATTATCACAGTTCAGTAAAC 57.505 37.500 0.00 0.00 38.21 2.01
2222 2465 7.701539 AATGGCATTATCACAGTTCAGTAAA 57.298 32.000 11.81 0.00 0.00 2.01
2223 2466 7.176515 ACAAATGGCATTATCACAGTTCAGTAA 59.823 33.333 14.05 0.00 0.00 2.24
2251 2503 1.003118 GCCCTCATGTACACCTGAACA 59.997 52.381 0.00 0.00 0.00 3.18
2252 2504 1.279271 AGCCCTCATGTACACCTGAAC 59.721 52.381 0.00 0.00 0.00 3.18
2358 2610 0.389391 ACCCTGTCTGGCGATAATCG 59.611 55.000 0.00 0.00 43.89 3.34
2383 2635 7.395489 AGCTCAAGATGGTATTTCACTTGATTT 59.605 33.333 0.00 0.00 43.37 2.17
2386 2638 5.645067 CAGCTCAAGATGGTATTTCACTTGA 59.355 40.000 0.00 0.00 42.59 3.02
2391 2643 6.095860 CCATTTCAGCTCAAGATGGTATTTCA 59.904 38.462 6.91 0.00 34.06 2.69
2396 2648 3.523157 TCCCATTTCAGCTCAAGATGGTA 59.477 43.478 12.00 0.00 36.39 3.25
2433 2685 4.568592 GGATCCTGAAGTTCCACCTGAAAT 60.569 45.833 3.84 0.00 33.94 2.17
2434 2686 3.244911 GGATCCTGAAGTTCCACCTGAAA 60.245 47.826 3.84 0.00 33.94 2.69
2661 2913 1.890894 CCATTGGTCCGAGACGAGT 59.109 57.895 0.00 0.00 32.65 4.18
2736 2988 5.865013 TGCGATCATAACGTTCTAGAACAAA 59.135 36.000 29.95 17.29 41.20 2.83
2738 2990 4.989044 TGCGATCATAACGTTCTAGAACA 58.011 39.130 29.95 15.03 41.20 3.18
2739 2991 5.271625 TCTGCGATCATAACGTTCTAGAAC 58.728 41.667 23.25 23.25 37.92 3.01
2740 2992 5.066117 ACTCTGCGATCATAACGTTCTAGAA 59.934 40.000 2.82 0.00 0.00 2.10
2741 2993 4.575236 ACTCTGCGATCATAACGTTCTAGA 59.425 41.667 2.82 1.42 0.00 2.43
2742 2994 4.849883 ACTCTGCGATCATAACGTTCTAG 58.150 43.478 2.82 0.00 0.00 2.43
2743 2995 4.895224 ACTCTGCGATCATAACGTTCTA 57.105 40.909 2.82 0.00 0.00 2.10
2744 2996 3.784701 ACTCTGCGATCATAACGTTCT 57.215 42.857 2.82 0.00 0.00 3.01
2745 2997 6.347881 CAATAACTCTGCGATCATAACGTTC 58.652 40.000 2.82 0.00 0.00 3.95
2746 2998 5.276868 GCAATAACTCTGCGATCATAACGTT 60.277 40.000 5.88 5.88 0.00 3.99
2747 2999 4.209288 GCAATAACTCTGCGATCATAACGT 59.791 41.667 0.00 0.00 0.00 3.99
2748 3000 4.209080 TGCAATAACTCTGCGATCATAACG 59.791 41.667 0.00 0.00 42.97 3.18
2766 3018 5.481473 ACCAGGTGTTAGATTCAAATGCAAT 59.519 36.000 0.00 0.00 0.00 3.56
2821 3073 0.898320 ACGGCTGTGAAGAGTAGCAT 59.102 50.000 0.00 0.00 39.15 3.79
2919 3171 1.541588 GTCCTCACAAATGAACCTGGC 59.458 52.381 0.00 0.00 33.30 4.85
3034 3286 1.133216 TGCTAACAGAGAGCTACTGCG 59.867 52.381 16.94 9.26 45.42 5.18
3044 3296 6.756074 CAGATTCTTTCCTAGTGCTAACAGAG 59.244 42.308 0.00 0.00 0.00 3.35
3045 3297 6.634805 CAGATTCTTTCCTAGTGCTAACAGA 58.365 40.000 0.00 0.00 0.00 3.41
3046 3298 5.293079 GCAGATTCTTTCCTAGTGCTAACAG 59.707 44.000 0.00 0.00 0.00 3.16
3064 3316 6.203723 GTCAGTCTACAGAAAAACTGCAGATT 59.796 38.462 23.35 12.96 46.57 2.40
3065 3317 5.698545 GTCAGTCTACAGAAAAACTGCAGAT 59.301 40.000 23.35 5.41 46.57 2.90
3236 3520 5.297776 GCTCTAATTGTATTGCACACCATCT 59.702 40.000 0.00 0.00 36.69 2.90
3247 3531 6.749139 TCGCTGTAGATGCTCTAATTGTATT 58.251 36.000 0.00 0.00 29.58 1.89
3280 3564 0.386731 CGGATGTTTGGTGCCGAAAC 60.387 55.000 0.00 6.07 46.29 2.78
3285 3569 4.114997 CGCCGGATGTTTGGTGCC 62.115 66.667 5.05 0.00 0.00 5.01
3317 3601 2.940410 GTCAAAGTTTTCTGTCCGGACA 59.060 45.455 34.13 34.13 39.32 4.02
3318 3602 2.289820 GGTCAAAGTTTTCTGTCCGGAC 59.710 50.000 28.17 28.17 0.00 4.79
3319 3603 2.567985 GGTCAAAGTTTTCTGTCCGGA 58.432 47.619 0.00 0.00 0.00 5.14
3327 3611 4.159693 AGGTCTTGTTGGGTCAAAGTTTTC 59.840 41.667 0.00 0.00 0.00 2.29
3336 3620 0.467290 TTGCCAGGTCTTGTTGGGTC 60.467 55.000 0.00 0.00 34.96 4.46
3340 3624 2.023673 TGAGTTTGCCAGGTCTTGTTG 58.976 47.619 0.00 0.00 0.00 3.33
3341 3625 2.301346 CTGAGTTTGCCAGGTCTTGTT 58.699 47.619 0.00 0.00 0.00 2.83
3342 3626 1.972872 CTGAGTTTGCCAGGTCTTGT 58.027 50.000 0.00 0.00 0.00 3.16
3352 3636 1.269778 GGACTTTTGGGCTGAGTTTGC 60.270 52.381 0.00 0.00 0.00 3.68
3362 3646 0.895559 GGTCAGCCTGGACTTTTGGG 60.896 60.000 0.00 0.00 37.91 4.12
3396 3681 4.488790 CCCACATATGAGCTGGGC 57.511 61.111 15.04 0.00 38.42 5.36
3444 3729 1.592669 GCCTGTCCGATCCGACATG 60.593 63.158 15.79 14.12 41.78 3.21
3452 3737 1.274703 ATGGTTCCTGCCTGTCCGAT 61.275 55.000 0.00 0.00 0.00 4.18
3467 3752 6.914665 TGATCTCTAATGGATTTGGAATGGT 58.085 36.000 0.00 0.00 0.00 3.55
3473 3758 9.962783 GAAGATTTTGATCTCTAATGGATTTGG 57.037 33.333 0.00 0.00 0.00 3.28
3484 3769 8.658619 ACTAGCCATATGAAGATTTTGATCTCT 58.341 33.333 3.65 0.00 0.00 3.10
3485 3770 8.719648 CACTAGCCATATGAAGATTTTGATCTC 58.280 37.037 3.65 0.00 0.00 2.75
3486 3771 7.174599 GCACTAGCCATATGAAGATTTTGATCT 59.825 37.037 3.65 0.00 33.58 2.75
3487 3772 7.174599 AGCACTAGCCATATGAAGATTTTGATC 59.825 37.037 3.65 0.00 43.56 2.92
3488 3773 7.002879 AGCACTAGCCATATGAAGATTTTGAT 58.997 34.615 3.65 0.00 43.56 2.57
3489 3774 6.359804 AGCACTAGCCATATGAAGATTTTGA 58.640 36.000 3.65 0.00 43.56 2.69
3490 3775 6.630444 AGCACTAGCCATATGAAGATTTTG 57.370 37.500 3.65 0.00 43.56 2.44
3491 3776 6.830324 TGAAGCACTAGCCATATGAAGATTTT 59.170 34.615 3.65 0.00 43.56 1.82
3492 3777 6.261826 GTGAAGCACTAGCCATATGAAGATTT 59.738 38.462 3.65 0.00 43.56 2.17
3493 3778 5.762218 GTGAAGCACTAGCCATATGAAGATT 59.238 40.000 3.65 0.00 43.56 2.40
3494 3779 5.163269 TGTGAAGCACTAGCCATATGAAGAT 60.163 40.000 3.65 0.00 43.56 2.40
3495 3780 4.162131 TGTGAAGCACTAGCCATATGAAGA 59.838 41.667 3.65 0.00 43.56 2.87
3496 3781 4.445453 TGTGAAGCACTAGCCATATGAAG 58.555 43.478 3.65 1.35 43.56 3.02
3497 3782 4.486125 TGTGAAGCACTAGCCATATGAA 57.514 40.909 3.65 0.00 43.56 2.57
3498 3783 4.486125 TTGTGAAGCACTAGCCATATGA 57.514 40.909 3.65 0.00 43.56 2.15
3499 3784 4.084171 CGATTGTGAAGCACTAGCCATATG 60.084 45.833 0.00 0.00 43.56 1.78
3500 3785 4.060900 CGATTGTGAAGCACTAGCCATAT 58.939 43.478 0.00 0.00 43.56 1.78
3501 3786 3.457234 CGATTGTGAAGCACTAGCCATA 58.543 45.455 0.00 0.00 43.56 2.74
3502 3787 2.283298 CGATTGTGAAGCACTAGCCAT 58.717 47.619 0.00 0.00 43.56 4.40
3503 3788 1.725641 CGATTGTGAAGCACTAGCCA 58.274 50.000 0.00 0.00 43.56 4.75
3504 3789 0.375106 GCGATTGTGAAGCACTAGCC 59.625 55.000 0.00 0.00 43.56 3.93
3505 3790 0.375106 GGCGATTGTGAAGCACTAGC 59.625 55.000 0.00 0.00 42.56 3.42
3506 3791 2.015736 AGGCGATTGTGAAGCACTAG 57.984 50.000 0.00 0.00 35.11 2.57
3507 3792 2.472695 AAGGCGATTGTGAAGCACTA 57.527 45.000 0.00 0.00 35.11 2.74
3508 3793 1.267806 CAAAGGCGATTGTGAAGCACT 59.732 47.619 0.00 0.00 35.11 4.40
3509 3794 1.666888 CCAAAGGCGATTGTGAAGCAC 60.667 52.381 5.56 0.00 34.56 4.40
3510 3795 0.597568 CCAAAGGCGATTGTGAAGCA 59.402 50.000 5.56 0.00 0.00 3.91
3511 3796 0.881118 TCCAAAGGCGATTGTGAAGC 59.119 50.000 5.56 0.00 0.00 3.86
3512 3797 2.095567 CAGTCCAAAGGCGATTGTGAAG 60.096 50.000 5.56 0.00 0.00 3.02
3513 3798 1.879380 CAGTCCAAAGGCGATTGTGAA 59.121 47.619 5.56 0.00 0.00 3.18
3514 3799 1.202758 ACAGTCCAAAGGCGATTGTGA 60.203 47.619 5.56 1.04 29.97 3.58
3515 3800 1.238439 ACAGTCCAAAGGCGATTGTG 58.762 50.000 5.56 1.12 29.97 3.33
3516 3801 1.608590 CAACAGTCCAAAGGCGATTGT 59.391 47.619 5.56 0.00 32.18 2.71
3517 3802 1.879380 TCAACAGTCCAAAGGCGATTG 59.121 47.619 0.00 0.00 0.00 2.67
3518 3803 2.270352 TCAACAGTCCAAAGGCGATT 57.730 45.000 0.00 0.00 0.00 3.34
3519 3804 2.359900 GATCAACAGTCCAAAGGCGAT 58.640 47.619 0.00 0.00 0.00 4.58
3520 3805 1.808411 GATCAACAGTCCAAAGGCGA 58.192 50.000 0.00 0.00 0.00 5.54
3521 3806 0.443869 CGATCAACAGTCCAAAGGCG 59.556 55.000 0.00 0.00 0.00 5.52
3522 3807 0.169009 GCGATCAACAGTCCAAAGGC 59.831 55.000 0.00 0.00 0.00 4.35
3523 3808 0.804989 GGCGATCAACAGTCCAAAGG 59.195 55.000 0.00 0.00 0.00 3.11
3524 3809 1.466167 CTGGCGATCAACAGTCCAAAG 59.534 52.381 5.67 0.00 0.00 2.77
3525 3810 1.522668 CTGGCGATCAACAGTCCAAA 58.477 50.000 5.67 0.00 0.00 3.28
3526 3811 0.321564 CCTGGCGATCAACAGTCCAA 60.322 55.000 11.41 0.00 32.90 3.53
3527 3812 1.296392 CCTGGCGATCAACAGTCCA 59.704 57.895 11.41 0.00 32.90 4.02
3528 3813 2.109126 GCCTGGCGATCAACAGTCC 61.109 63.158 1.35 1.14 32.90 3.85
3529 3814 3.490890 GCCTGGCGATCAACAGTC 58.509 61.111 1.35 0.00 32.90 3.51
3543 3828 4.087892 ATGCTCGAGTTGCCGCCT 62.088 61.111 15.13 0.00 0.00 5.52
3544 3829 3.567797 GATGCTCGAGTTGCCGCC 61.568 66.667 15.13 0.00 0.00 6.13
3545 3830 3.567797 GGATGCTCGAGTTGCCGC 61.568 66.667 15.13 0.00 0.00 6.53
3546 3831 2.892425 GGGATGCTCGAGTTGCCG 60.892 66.667 15.13 0.00 0.00 5.69
3547 3832 2.892425 CGGGATGCTCGAGTTGCC 60.892 66.667 15.13 15.07 0.00 4.52
3548 3833 1.880340 CTCGGGATGCTCGAGTTGC 60.880 63.158 15.13 7.36 46.16 4.17
3549 3834 4.409342 CTCGGGATGCTCGAGTTG 57.591 61.111 15.13 0.00 46.16 3.16
3553 3838 1.215382 CAACACTCGGGATGCTCGA 59.785 57.895 0.00 0.00 35.24 4.04
3554 3839 1.079819 ACAACACTCGGGATGCTCG 60.080 57.895 0.00 0.00 0.00 5.03
3555 3840 0.320771 ACACAACACTCGGGATGCTC 60.321 55.000 0.00 0.00 0.00 4.26
3556 3841 0.108585 AACACAACACTCGGGATGCT 59.891 50.000 0.00 0.00 0.00 3.79
3557 3842 0.517316 GAACACAACACTCGGGATGC 59.483 55.000 0.00 0.00 0.00 3.91
3558 3843 1.800586 CAGAACACAACACTCGGGATG 59.199 52.381 0.00 0.00 0.00 3.51
3559 3844 1.416401 ACAGAACACAACACTCGGGAT 59.584 47.619 0.00 0.00 0.00 3.85
3560 3845 0.828022 ACAGAACACAACACTCGGGA 59.172 50.000 0.00 0.00 0.00 5.14
3561 3846 0.937304 CACAGAACACAACACTCGGG 59.063 55.000 0.00 0.00 0.00 5.14
3562 3847 1.651987 ACACAGAACACAACACTCGG 58.348 50.000 0.00 0.00 0.00 4.63
3563 3848 2.787723 GCAACACAGAACACAACACTCG 60.788 50.000 0.00 0.00 0.00 4.18
3564 3849 2.477863 GGCAACACAGAACACAACACTC 60.478 50.000 0.00 0.00 0.00 3.51
3565 3850 1.472480 GGCAACACAGAACACAACACT 59.528 47.619 0.00 0.00 0.00 3.55
3566 3851 1.201181 TGGCAACACAGAACACAACAC 59.799 47.619 0.00 0.00 46.17 3.32
3567 3852 1.472082 CTGGCAACACAGAACACAACA 59.528 47.619 0.00 0.00 46.17 3.33
3568 3853 1.202290 CCTGGCAACACAGAACACAAC 60.202 52.381 0.00 0.00 46.17 3.32
3569 3854 1.102154 CCTGGCAACACAGAACACAA 58.898 50.000 0.00 0.00 46.17 3.33
3570 3855 0.254462 TCCTGGCAACACAGAACACA 59.746 50.000 0.00 0.00 46.17 3.72
3571 3856 0.947244 CTCCTGGCAACACAGAACAC 59.053 55.000 0.00 0.00 46.17 3.32
3572 3857 0.179020 CCTCCTGGCAACACAGAACA 60.179 55.000 0.00 0.00 46.17 3.18
3573 3858 0.108585 TCCTCCTGGCAACACAGAAC 59.891 55.000 0.00 0.00 46.17 3.01
3574 3859 0.397941 CTCCTCCTGGCAACACAGAA 59.602 55.000 0.00 0.00 46.17 3.02
3575 3860 1.483595 CCTCCTCCTGGCAACACAGA 61.484 60.000 0.00 0.00 46.17 3.41
3576 3861 1.002868 CCTCCTCCTGGCAACACAG 60.003 63.158 0.00 0.00 46.17 3.66
3577 3862 1.059584 TTCCTCCTCCTGGCAACACA 61.060 55.000 0.00 0.00 46.17 3.72
3578 3863 0.322008 CTTCCTCCTCCTGGCAACAC 60.322 60.000 0.00 0.00 46.17 3.32
3580 3865 0.915364 ATCTTCCTCCTCCTGGCAAC 59.085 55.000 0.00 0.00 0.00 4.17
3581 3866 1.673767 AATCTTCCTCCTCCTGGCAA 58.326 50.000 0.00 0.00 0.00 4.52
3582 3867 1.673767 AAATCTTCCTCCTCCTGGCA 58.326 50.000 0.00 0.00 0.00 4.92
3583 3868 3.933861 TTAAATCTTCCTCCTCCTGGC 57.066 47.619 0.00 0.00 0.00 4.85
3584 3869 5.825151 GTGATTTAAATCTTCCTCCTCCTGG 59.175 44.000 24.77 0.00 36.39 4.45
3585 3870 6.418101 TGTGATTTAAATCTTCCTCCTCCTG 58.582 40.000 24.77 0.00 36.39 3.86
3586 3871 6.642733 TGTGATTTAAATCTTCCTCCTCCT 57.357 37.500 24.77 0.00 36.39 3.69
3587 3872 6.238869 GCATGTGATTTAAATCTTCCTCCTCC 60.239 42.308 24.77 0.40 36.39 4.30
3588 3873 6.545298 AGCATGTGATTTAAATCTTCCTCCTC 59.455 38.462 24.77 9.67 36.39 3.71
3589 3874 6.430007 AGCATGTGATTTAAATCTTCCTCCT 58.570 36.000 24.77 13.20 36.39 3.69
3590 3875 6.238869 GGAGCATGTGATTTAAATCTTCCTCC 60.239 42.308 24.77 23.49 36.39 4.30
3591 3876 6.545298 AGGAGCATGTGATTTAAATCTTCCTC 59.455 38.462 24.77 20.18 36.39 3.71
3592 3877 6.430007 AGGAGCATGTGATTTAAATCTTCCT 58.570 36.000 24.77 20.93 36.39 3.36
3593 3878 6.319658 TGAGGAGCATGTGATTTAAATCTTCC 59.680 38.462 24.77 19.59 36.39 3.46
3594 3879 7.066766 ACTGAGGAGCATGTGATTTAAATCTTC 59.933 37.037 24.77 18.40 36.39 2.87
3595 3880 6.888632 ACTGAGGAGCATGTGATTTAAATCTT 59.111 34.615 24.77 10.34 36.39 2.40
3596 3881 6.421485 ACTGAGGAGCATGTGATTTAAATCT 58.579 36.000 24.77 7.31 36.39 2.40
3597 3882 6.690194 ACTGAGGAGCATGTGATTTAAATC 57.310 37.500 19.37 19.37 35.97 2.17
3598 3883 6.626623 GCAACTGAGGAGCATGTGATTTAAAT 60.627 38.462 0.00 0.00 0.00 1.40
3599 3884 5.335897 GCAACTGAGGAGCATGTGATTTAAA 60.336 40.000 0.00 0.00 0.00 1.52
3600 3885 4.156556 GCAACTGAGGAGCATGTGATTTAA 59.843 41.667 0.00 0.00 0.00 1.52
3601 3886 3.691118 GCAACTGAGGAGCATGTGATTTA 59.309 43.478 0.00 0.00 0.00 1.40
3602 3887 2.490903 GCAACTGAGGAGCATGTGATTT 59.509 45.455 0.00 0.00 0.00 2.17
3603 3888 2.089980 GCAACTGAGGAGCATGTGATT 58.910 47.619 0.00 0.00 0.00 2.57
3604 3889 1.281287 AGCAACTGAGGAGCATGTGAT 59.719 47.619 0.00 0.00 0.00 3.06
3605 3890 0.689055 AGCAACTGAGGAGCATGTGA 59.311 50.000 0.00 0.00 0.00 3.58
3606 3891 1.085091 GAGCAACTGAGGAGCATGTG 58.915 55.000 0.00 0.00 0.00 3.21
3607 3892 0.035630 GGAGCAACTGAGGAGCATGT 60.036 55.000 0.00 0.00 0.00 3.21
3608 3893 0.252479 AGGAGCAACTGAGGAGCATG 59.748 55.000 1.48 0.00 0.00 4.06
3609 3894 0.990374 AAGGAGCAACTGAGGAGCAT 59.010 50.000 1.48 0.00 0.00 3.79
3610 3895 0.322975 GAAGGAGCAACTGAGGAGCA 59.677 55.000 1.48 0.00 0.00 4.26
3611 3896 0.739112 CGAAGGAGCAACTGAGGAGC 60.739 60.000 0.00 0.00 0.00 4.70
3612 3897 0.739112 GCGAAGGAGCAACTGAGGAG 60.739 60.000 0.00 0.00 37.05 3.69
3613 3898 1.188219 AGCGAAGGAGCAACTGAGGA 61.188 55.000 0.00 0.00 40.15 3.71
3614 3899 0.532573 TAGCGAAGGAGCAACTGAGG 59.467 55.000 0.00 0.00 40.15 3.86
3615 3900 1.474478 TCTAGCGAAGGAGCAACTGAG 59.526 52.381 0.00 0.00 40.15 3.35
3616 3901 1.474478 CTCTAGCGAAGGAGCAACTGA 59.526 52.381 0.00 0.00 40.15 3.41
3617 3902 1.474478 TCTCTAGCGAAGGAGCAACTG 59.526 52.381 0.00 0.00 40.15 3.16
3618 3903 1.840737 TCTCTAGCGAAGGAGCAACT 58.159 50.000 0.00 0.00 40.15 3.16
3619 3904 2.880963 ATCTCTAGCGAAGGAGCAAC 57.119 50.000 0.00 0.00 40.15 4.17
3620 3905 3.525537 CAAATCTCTAGCGAAGGAGCAA 58.474 45.455 0.00 0.00 40.15 3.91
3621 3906 2.159043 CCAAATCTCTAGCGAAGGAGCA 60.159 50.000 0.00 0.00 40.15 4.26
3622 3907 2.159028 ACCAAATCTCTAGCGAAGGAGC 60.159 50.000 6.31 0.00 37.41 4.70
3623 3908 3.810310 ACCAAATCTCTAGCGAAGGAG 57.190 47.619 6.31 0.00 0.00 3.69
3624 3909 4.021229 TGTACCAAATCTCTAGCGAAGGA 58.979 43.478 6.31 0.00 0.00 3.36
3625 3910 4.363999 CTGTACCAAATCTCTAGCGAAGG 58.636 47.826 0.00 0.00 0.00 3.46
3626 3911 3.799420 GCTGTACCAAATCTCTAGCGAAG 59.201 47.826 0.00 0.00 0.00 3.79
3627 3912 3.782046 GCTGTACCAAATCTCTAGCGAA 58.218 45.455 0.00 0.00 0.00 4.70
3628 3913 3.438297 GCTGTACCAAATCTCTAGCGA 57.562 47.619 0.00 0.00 0.00 4.93
3629 3914 2.120232 CGCTGTACCAAATCTCTAGCG 58.880 52.381 0.00 0.00 44.89 4.26
3630 3915 3.166489 ACGCTGTACCAAATCTCTAGC 57.834 47.619 0.00 0.00 0.00 3.42
3631 3916 5.000012 AGAACGCTGTACCAAATCTCTAG 58.000 43.478 0.00 0.00 0.00 2.43
3632 3917 4.142227 GGAGAACGCTGTACCAAATCTCTA 60.142 45.833 10.60 0.00 33.92 2.43
3633 3918 3.368531 GGAGAACGCTGTACCAAATCTCT 60.369 47.826 10.60 0.00 33.92 3.10
3634 3919 2.930682 GGAGAACGCTGTACCAAATCTC 59.069 50.000 0.00 0.00 0.00 2.75
3635 3920 2.567615 AGGAGAACGCTGTACCAAATCT 59.432 45.455 0.00 0.00 0.00 2.40
3636 3921 2.673368 CAGGAGAACGCTGTACCAAATC 59.327 50.000 0.00 0.00 0.00 2.17
3637 3922 2.699954 CAGGAGAACGCTGTACCAAAT 58.300 47.619 0.00 0.00 0.00 2.32
3638 3923 1.876416 GCAGGAGAACGCTGTACCAAA 60.876 52.381 0.00 0.00 0.00 3.28
3639 3924 0.320421 GCAGGAGAACGCTGTACCAA 60.320 55.000 0.00 0.00 0.00 3.67
3640 3925 1.292223 GCAGGAGAACGCTGTACCA 59.708 57.895 0.00 0.00 0.00 3.25
3641 3926 1.448013 GGCAGGAGAACGCTGTACC 60.448 63.158 0.00 0.00 0.00 3.34
3642 3927 0.037232 AAGGCAGGAGAACGCTGTAC 60.037 55.000 0.00 0.00 0.00 2.90
3643 3928 0.037326 CAAGGCAGGAGAACGCTGTA 60.037 55.000 0.00 0.00 0.00 2.74
3644 3929 1.302033 CAAGGCAGGAGAACGCTGT 60.302 57.895 0.00 0.00 0.00 4.40
3645 3930 2.037136 CCAAGGCAGGAGAACGCTG 61.037 63.158 0.00 0.00 0.00 5.18
3646 3931 2.348998 CCAAGGCAGGAGAACGCT 59.651 61.111 0.00 0.00 0.00 5.07
3647 3932 3.435186 GCCAAGGCAGGAGAACGC 61.435 66.667 6.14 0.00 41.49 4.84
3648 3933 3.121030 CGCCAAGGCAGGAGAACG 61.121 66.667 12.19 0.00 42.06 3.95
3649 3934 2.032681 ACGCCAAGGCAGGAGAAC 59.967 61.111 12.19 0.00 42.06 3.01
3650 3935 2.172483 GAGACGCCAAGGCAGGAGAA 62.172 60.000 12.19 0.00 42.06 2.87
3651 3936 2.604686 AGACGCCAAGGCAGGAGA 60.605 61.111 12.19 0.00 42.06 3.71
3652 3937 2.125350 GAGACGCCAAGGCAGGAG 60.125 66.667 12.19 0.00 42.06 3.69
3653 3938 3.706373 GGAGACGCCAAGGCAGGA 61.706 66.667 12.19 0.00 42.06 3.86
3654 3939 4.020617 TGGAGACGCCAAGGCAGG 62.021 66.667 12.19 0.00 45.87 4.85
3662 3947 1.849097 CGTAAACCTATGGAGACGCC 58.151 55.000 0.00 0.00 37.10 5.68
3663 3948 1.206523 GCGTAAACCTATGGAGACGC 58.793 55.000 14.53 14.53 41.16 5.19
3664 3949 1.849097 GGCGTAAACCTATGGAGACG 58.151 55.000 0.00 0.00 0.00 4.18
3665 3950 1.406539 TCGGCGTAAACCTATGGAGAC 59.593 52.381 6.85 0.00 0.00 3.36
3666 3951 1.406539 GTCGGCGTAAACCTATGGAGA 59.593 52.381 6.85 0.00 0.00 3.71
3667 3952 1.537562 GGTCGGCGTAAACCTATGGAG 60.538 57.143 6.85 0.00 32.54 3.86
3668 3953 0.461135 GGTCGGCGTAAACCTATGGA 59.539 55.000 6.85 0.00 32.54 3.41
3669 3954 0.531311 GGGTCGGCGTAAACCTATGG 60.531 60.000 14.80 0.00 35.78 2.74
3670 3955 0.531311 GGGGTCGGCGTAAACCTATG 60.531 60.000 14.80 0.00 35.78 2.23
3671 3956 1.825341 GGGGTCGGCGTAAACCTAT 59.175 57.895 14.80 0.00 35.78 2.57
3672 3957 2.709883 CGGGGTCGGCGTAAACCTA 61.710 63.158 14.80 0.00 35.78 3.08
3673 3958 4.073200 CGGGGTCGGCGTAAACCT 62.073 66.667 14.80 0.00 35.78 3.50
3696 3981 3.867216 GCATTGCTCAGGCCTGAATTTTT 60.867 43.478 34.30 16.47 39.39 1.94
3697 3982 2.354403 GCATTGCTCAGGCCTGAATTTT 60.354 45.455 34.30 17.85 39.39 1.82
3698 3983 1.206371 GCATTGCTCAGGCCTGAATTT 59.794 47.619 34.30 17.50 39.39 1.82
3699 3984 0.822164 GCATTGCTCAGGCCTGAATT 59.178 50.000 34.30 17.16 39.39 2.17
3700 3985 0.323999 TGCATTGCTCAGGCCTGAAT 60.324 50.000 34.30 22.95 39.39 2.57
3701 3986 0.540133 TTGCATTGCTCAGGCCTGAA 60.540 50.000 34.30 21.69 39.39 3.02
3702 3987 0.323999 ATTGCATTGCTCAGGCCTGA 60.324 50.000 33.04 33.04 37.74 3.86
3703 3988 0.535335 AATTGCATTGCTCAGGCCTG 59.465 50.000 27.87 27.87 37.74 4.85
3704 3989 1.272807 AAATTGCATTGCTCAGGCCT 58.727 45.000 10.49 0.00 37.74 5.19
3705 3990 2.103537 AAAATTGCATTGCTCAGGCC 57.896 45.000 10.49 0.00 37.74 5.19
3706 3991 2.160813 CCAAAAATTGCATTGCTCAGGC 59.839 45.455 10.49 0.00 39.26 4.85
3707 3992 3.187637 CACCAAAAATTGCATTGCTCAGG 59.812 43.478 10.49 5.01 0.00 3.86
3708 3993 3.187637 CCACCAAAAATTGCATTGCTCAG 59.812 43.478 10.49 0.00 0.00 3.35
3709 3994 3.139850 CCACCAAAAATTGCATTGCTCA 58.860 40.909 10.49 0.00 0.00 4.26
3710 3995 3.401182 TCCACCAAAAATTGCATTGCTC 58.599 40.909 10.49 0.00 0.00 4.26
3711 3996 3.488778 TCCACCAAAAATTGCATTGCT 57.511 38.095 10.49 0.00 0.00 3.91
3712 3997 3.814283 TCTTCCACCAAAAATTGCATTGC 59.186 39.130 0.46 0.46 0.00 3.56
3713 3998 4.084433 CGTCTTCCACCAAAAATTGCATTG 60.084 41.667 0.00 0.00 0.00 2.82
3714 3999 4.057432 CGTCTTCCACCAAAAATTGCATT 58.943 39.130 0.00 0.00 0.00 3.56
3715 4000 3.069443 ACGTCTTCCACCAAAAATTGCAT 59.931 39.130 0.00 0.00 0.00 3.96
3716 4001 2.428890 ACGTCTTCCACCAAAAATTGCA 59.571 40.909 0.00 0.00 0.00 4.08
3717 4002 3.092334 ACGTCTTCCACCAAAAATTGC 57.908 42.857 0.00 0.00 0.00 3.56
3718 4003 4.517453 TCCTACGTCTTCCACCAAAAATTG 59.483 41.667 0.00 0.00 0.00 2.32
3719 4004 4.721132 TCCTACGTCTTCCACCAAAAATT 58.279 39.130 0.00 0.00 0.00 1.82
3720 4005 4.360951 TCCTACGTCTTCCACCAAAAAT 57.639 40.909 0.00 0.00 0.00 1.82
3721 4006 3.842007 TCCTACGTCTTCCACCAAAAA 57.158 42.857 0.00 0.00 0.00 1.94
3722 4007 3.388676 TCTTCCTACGTCTTCCACCAAAA 59.611 43.478 0.00 0.00 0.00 2.44
3723 4008 2.967201 TCTTCCTACGTCTTCCACCAAA 59.033 45.455 0.00 0.00 0.00 3.28
3724 4009 2.600790 TCTTCCTACGTCTTCCACCAA 58.399 47.619 0.00 0.00 0.00 3.67
3725 4010 2.297698 TCTTCCTACGTCTTCCACCA 57.702 50.000 0.00 0.00 0.00 4.17
3726 4011 4.996788 TTATCTTCCTACGTCTTCCACC 57.003 45.455 0.00 0.00 0.00 4.61
3727 4012 5.575995 GTGTTTATCTTCCTACGTCTTCCAC 59.424 44.000 0.00 0.00 0.00 4.02
3728 4013 5.479375 AGTGTTTATCTTCCTACGTCTTCCA 59.521 40.000 0.00 0.00 0.00 3.53
3729 4014 5.963594 AGTGTTTATCTTCCTACGTCTTCC 58.036 41.667 0.00 0.00 0.00 3.46
3730 4015 6.748198 CAGAGTGTTTATCTTCCTACGTCTTC 59.252 42.308 0.00 0.00 0.00 2.87
3731 4016 6.350277 CCAGAGTGTTTATCTTCCTACGTCTT 60.350 42.308 0.00 0.00 0.00 3.01
3732 4017 5.125739 CCAGAGTGTTTATCTTCCTACGTCT 59.874 44.000 0.00 0.00 0.00 4.18
3733 4018 5.105837 ACCAGAGTGTTTATCTTCCTACGTC 60.106 44.000 0.00 0.00 0.00 4.34
3734 4019 4.771054 ACCAGAGTGTTTATCTTCCTACGT 59.229 41.667 0.00 0.00 0.00 3.57
3735 4020 5.326200 ACCAGAGTGTTTATCTTCCTACG 57.674 43.478 0.00 0.00 0.00 3.51
3736 4021 6.128254 GCAAACCAGAGTGTTTATCTTCCTAC 60.128 42.308 0.00 0.00 36.33 3.18
3737 4022 5.938125 GCAAACCAGAGTGTTTATCTTCCTA 59.062 40.000 0.00 0.00 36.33 2.94
3738 4023 4.762251 GCAAACCAGAGTGTTTATCTTCCT 59.238 41.667 0.00 0.00 36.33 3.36
3739 4024 4.082733 GGCAAACCAGAGTGTTTATCTTCC 60.083 45.833 0.00 0.00 36.33 3.46
3740 4025 4.762251 AGGCAAACCAGAGTGTTTATCTTC 59.238 41.667 0.00 0.00 36.33 2.87
3741 4026 4.729868 AGGCAAACCAGAGTGTTTATCTT 58.270 39.130 0.00 0.00 36.33 2.40
3742 4027 4.373156 AGGCAAACCAGAGTGTTTATCT 57.627 40.909 0.00 0.00 36.33 1.98
3743 4028 4.278419 ACAAGGCAAACCAGAGTGTTTATC 59.722 41.667 0.00 0.00 36.33 1.75
3744 4029 4.037923 CACAAGGCAAACCAGAGTGTTTAT 59.962 41.667 0.00 0.00 36.33 1.40
3745 4030 3.380004 CACAAGGCAAACCAGAGTGTTTA 59.620 43.478 0.00 0.00 36.33 2.01
3746 4031 2.166254 CACAAGGCAAACCAGAGTGTTT 59.834 45.455 0.00 0.00 38.95 2.83
3747 4032 1.750778 CACAAGGCAAACCAGAGTGTT 59.249 47.619 0.00 0.00 39.06 3.32
3748 4033 1.340991 ACACAAGGCAAACCAGAGTGT 60.341 47.619 0.00 0.00 40.45 3.55
3749 4034 1.392589 ACACAAGGCAAACCAGAGTG 58.607 50.000 0.00 0.00 39.05 3.51
3750 4035 2.143876 AACACAAGGCAAACCAGAGT 57.856 45.000 0.00 0.00 39.06 3.24
3751 4036 2.032030 CGTAACACAAGGCAAACCAGAG 60.032 50.000 0.00 0.00 39.06 3.35
3752 4037 1.944024 CGTAACACAAGGCAAACCAGA 59.056 47.619 0.00 0.00 39.06 3.86
3753 4038 1.599419 GCGTAACACAAGGCAAACCAG 60.599 52.381 0.00 0.00 39.06 4.00
3754 4039 0.382515 GCGTAACACAAGGCAAACCA 59.617 50.000 0.00 0.00 39.06 3.67
3755 4040 0.666374 AGCGTAACACAAGGCAAACC 59.334 50.000 0.00 0.00 32.74 3.27
3756 4041 1.753956 CAGCGTAACACAAGGCAAAC 58.246 50.000 0.00 0.00 32.74 2.93
3757 4042 0.030101 GCAGCGTAACACAAGGCAAA 59.970 50.000 0.00 0.00 32.74 3.68
3758 4043 1.098129 TGCAGCGTAACACAAGGCAA 61.098 50.000 0.00 0.00 32.74 4.52
3759 4044 0.888736 ATGCAGCGTAACACAAGGCA 60.889 50.000 0.00 0.00 32.74 4.75
3760 4045 0.179189 GATGCAGCGTAACACAAGGC 60.179 55.000 0.00 0.00 0.00 4.35
3761 4046 1.129251 CAGATGCAGCGTAACACAAGG 59.871 52.381 0.00 0.00 0.00 3.61
3762 4047 1.129251 CCAGATGCAGCGTAACACAAG 59.871 52.381 0.00 0.00 0.00 3.16
3763 4048 1.155889 CCAGATGCAGCGTAACACAA 58.844 50.000 0.00 0.00 0.00 3.33
3764 4049 1.298157 GCCAGATGCAGCGTAACACA 61.298 55.000 0.00 0.00 40.77 3.72
3765 4050 1.021390 AGCCAGATGCAGCGTAACAC 61.021 55.000 0.00 0.00 44.83 3.32
3766 4051 1.020861 CAGCCAGATGCAGCGTAACA 61.021 55.000 0.00 0.00 44.83 2.41
3767 4052 1.709147 CCAGCCAGATGCAGCGTAAC 61.709 60.000 0.00 0.00 44.83 2.50
3768 4053 1.450134 CCAGCCAGATGCAGCGTAA 60.450 57.895 0.00 0.00 44.83 3.18
3769 4054 1.898330 TTCCAGCCAGATGCAGCGTA 61.898 55.000 0.00 0.00 44.83 4.42
3770 4055 3.258228 TTCCAGCCAGATGCAGCGT 62.258 57.895 0.00 0.00 44.83 5.07
3771 4056 2.437180 TTCCAGCCAGATGCAGCG 60.437 61.111 0.00 0.00 44.83 5.18
3772 4057 2.758089 CGTTCCAGCCAGATGCAGC 61.758 63.158 0.00 0.00 44.83 5.25
3773 4058 0.674581 TTCGTTCCAGCCAGATGCAG 60.675 55.000 0.00 0.00 44.83 4.41
3774 4059 0.250684 TTTCGTTCCAGCCAGATGCA 60.251 50.000 0.00 0.00 44.83 3.96
3775 4060 0.169009 GTTTCGTTCCAGCCAGATGC 59.831 55.000 0.00 0.00 41.71 3.91
3776 4061 1.466167 CTGTTTCGTTCCAGCCAGATG 59.534 52.381 0.00 0.00 0.00 2.90
3777 4062 1.813513 CTGTTTCGTTCCAGCCAGAT 58.186 50.000 0.00 0.00 0.00 2.90
3778 4063 0.884704 GCTGTTTCGTTCCAGCCAGA 60.885 55.000 10.45 0.00 46.55 3.86
3779 4064 1.576421 GCTGTTTCGTTCCAGCCAG 59.424 57.895 10.45 0.00 46.55 4.85
3780 4065 3.744559 GCTGTTTCGTTCCAGCCA 58.255 55.556 10.45 0.00 46.55 4.75
3783 4068 1.157870 ACACGGCTGTTTCGTTCCAG 61.158 55.000 0.00 0.00 38.94 3.86
3784 4069 0.745128 AACACGGCTGTTTCGTTCCA 60.745 50.000 0.00 0.00 37.31 3.53
3785 4070 0.379316 AAACACGGCTGTTTCGTTCC 59.621 50.000 0.00 0.00 45.81 3.62
3786 4071 3.909957 AAACACGGCTGTTTCGTTC 57.090 47.368 0.00 0.00 45.81 3.95
3792 4077 2.416701 CCTTGTCAAAAACACGGCTGTT 60.417 45.455 0.00 0.00 40.09 3.16
3793 4078 1.134175 CCTTGTCAAAAACACGGCTGT 59.866 47.619 0.00 0.00 40.09 4.40
3794 4079 1.838913 CCTTGTCAAAAACACGGCTG 58.161 50.000 0.00 0.00 40.09 4.85
3798 4083 3.684103 TGCTACCTTGTCAAAAACACG 57.316 42.857 0.00 0.00 37.70 4.49
3799 4084 4.993905 AGTTGCTACCTTGTCAAAAACAC 58.006 39.130 0.00 0.00 37.70 3.32
3800 4085 6.734137 CATAGTTGCTACCTTGTCAAAAACA 58.266 36.000 0.00 0.00 35.59 2.83
3801 4086 5.629435 GCATAGTTGCTACCTTGTCAAAAAC 59.371 40.000 0.00 0.00 45.77 2.43
3802 4087 5.768317 GCATAGTTGCTACCTTGTCAAAAA 58.232 37.500 0.00 0.00 45.77 1.94
3803 4088 5.371115 GCATAGTTGCTACCTTGTCAAAA 57.629 39.130 0.00 0.00 45.77 2.44
3817 4102 5.220586 CGTGTAACCATGTAAGGCATAGTTG 60.221 44.000 0.00 0.00 39.22 3.16
3818 4103 4.873827 CGTGTAACCATGTAAGGCATAGTT 59.126 41.667 0.00 0.00 41.18 2.24
3819 4104 4.160814 TCGTGTAACCATGTAAGGCATAGT 59.839 41.667 0.00 0.00 35.74 2.12
3820 4105 4.689071 TCGTGTAACCATGTAAGGCATAG 58.311 43.478 0.00 0.00 35.74 2.23
3821 4106 4.739587 TCGTGTAACCATGTAAGGCATA 57.260 40.909 0.00 0.00 35.74 3.14
3822 4107 3.620427 TCGTGTAACCATGTAAGGCAT 57.380 42.857 0.00 0.00 38.60 4.40
3823 4108 3.266636 CATCGTGTAACCATGTAAGGCA 58.733 45.455 0.00 0.00 0.00 4.75
3824 4109 2.031683 GCATCGTGTAACCATGTAAGGC 59.968 50.000 0.00 0.00 0.00 4.35
3825 4110 3.266636 TGCATCGTGTAACCATGTAAGG 58.733 45.455 0.00 0.00 0.00 2.69
3826 4111 6.597262 TTATGCATCGTGTAACCATGTAAG 57.403 37.500 0.19 0.00 0.00 2.34
3827 4112 6.986904 TTTATGCATCGTGTAACCATGTAA 57.013 33.333 0.19 0.00 0.00 2.41
3828 4113 6.763610 TCATTTATGCATCGTGTAACCATGTA 59.236 34.615 0.19 0.00 0.00 2.29
3829 4114 5.588246 TCATTTATGCATCGTGTAACCATGT 59.412 36.000 0.19 0.00 0.00 3.21
3830 4115 6.058827 TCATTTATGCATCGTGTAACCATG 57.941 37.500 0.19 0.00 0.00 3.66
3831 4116 6.542005 TCTTCATTTATGCATCGTGTAACCAT 59.458 34.615 0.19 0.00 0.00 3.55
3832 4117 5.877564 TCTTCATTTATGCATCGTGTAACCA 59.122 36.000 0.19 0.00 0.00 3.67
3833 4118 6.358118 TCTTCATTTATGCATCGTGTAACC 57.642 37.500 0.19 0.00 0.00 2.85
3834 4119 8.841444 AATTCTTCATTTATGCATCGTGTAAC 57.159 30.769 0.19 0.00 0.00 2.50
3835 4120 8.672815 TGAATTCTTCATTTATGCATCGTGTAA 58.327 29.630 0.19 0.00 34.08 2.41
3836 4121 8.207521 TGAATTCTTCATTTATGCATCGTGTA 57.792 30.769 0.19 0.00 34.08 2.90
3837 4122 7.087409 TGAATTCTTCATTTATGCATCGTGT 57.913 32.000 0.19 0.00 34.08 4.49
3838 4123 7.974243 TTGAATTCTTCATTTATGCATCGTG 57.026 32.000 0.19 0.56 39.84 4.35
3839 4124 9.590451 AATTTGAATTCTTCATTTATGCATCGT 57.410 25.926 0.19 0.00 39.84 3.73
3840 4125 9.843874 CAATTTGAATTCTTCATTTATGCATCG 57.156 29.630 0.19 0.00 39.84 3.84
3843 4128 8.937884 CCACAATTTGAATTCTTCATTTATGCA 58.062 29.630 7.05 0.00 39.84 3.96
3844 4129 9.153721 TCCACAATTTGAATTCTTCATTTATGC 57.846 29.630 7.05 0.00 39.84 3.14
3847 4132 9.153721 GCATCCACAATTTGAATTCTTCATTTA 57.846 29.630 7.05 0.00 39.84 1.40
3848 4133 7.148540 CGCATCCACAATTTGAATTCTTCATTT 60.149 33.333 7.05 0.00 39.84 2.32
3849 4134 6.311935 CGCATCCACAATTTGAATTCTTCATT 59.688 34.615 7.05 0.00 39.84 2.57
3850 4135 5.808540 CGCATCCACAATTTGAATTCTTCAT 59.191 36.000 7.05 0.00 39.84 2.57
3851 4136 5.048154 TCGCATCCACAATTTGAATTCTTCA 60.048 36.000 7.05 0.00 38.04 3.02
3852 4137 5.401550 TCGCATCCACAATTTGAATTCTTC 58.598 37.500 7.05 0.00 0.00 2.87
3853 4138 5.389859 TCGCATCCACAATTTGAATTCTT 57.610 34.783 7.05 0.00 0.00 2.52
3854 4139 4.676196 GCTCGCATCCACAATTTGAATTCT 60.676 41.667 7.05 0.00 0.00 2.40
3855 4140 3.549070 GCTCGCATCCACAATTTGAATTC 59.451 43.478 2.79 0.00 0.00 2.17
3856 4141 3.194116 AGCTCGCATCCACAATTTGAATT 59.806 39.130 2.79 0.00 0.00 2.17
3857 4142 2.756760 AGCTCGCATCCACAATTTGAAT 59.243 40.909 2.79 0.00 0.00 2.57
3858 4143 2.161855 AGCTCGCATCCACAATTTGAA 58.838 42.857 2.79 0.00 0.00 2.69
3859 4144 1.825090 AGCTCGCATCCACAATTTGA 58.175 45.000 2.79 0.00 0.00 2.69
3860 4145 3.374988 TCTTAGCTCGCATCCACAATTTG 59.625 43.478 0.00 0.00 0.00 2.32
3861 4146 3.609853 TCTTAGCTCGCATCCACAATTT 58.390 40.909 0.00 0.00 0.00 1.82
3862 4147 3.266510 TCTTAGCTCGCATCCACAATT 57.733 42.857 0.00 0.00 0.00 2.32
3863 4148 2.988010 TCTTAGCTCGCATCCACAAT 57.012 45.000 0.00 0.00 0.00 2.71
3864 4149 2.988010 ATCTTAGCTCGCATCCACAA 57.012 45.000 0.00 0.00 0.00 3.33
3865 4150 2.297315 CCTATCTTAGCTCGCATCCACA 59.703 50.000 0.00 0.00 0.00 4.17
3866 4151 2.297597 ACCTATCTTAGCTCGCATCCAC 59.702 50.000 0.00 0.00 0.00 4.02
3867 4152 2.297315 CACCTATCTTAGCTCGCATCCA 59.703 50.000 0.00 0.00 0.00 3.41
3868 4153 2.353208 CCACCTATCTTAGCTCGCATCC 60.353 54.545 0.00 0.00 0.00 3.51
3869 4154 2.353208 CCCACCTATCTTAGCTCGCATC 60.353 54.545 0.00 0.00 0.00 3.91
3870 4155 1.620819 CCCACCTATCTTAGCTCGCAT 59.379 52.381 0.00 0.00 0.00 4.73
3871 4156 1.040646 CCCACCTATCTTAGCTCGCA 58.959 55.000 0.00 0.00 0.00 5.10
3872 4157 1.329256 TCCCACCTATCTTAGCTCGC 58.671 55.000 0.00 0.00 0.00 5.03
3873 4158 3.129638 GCTATCCCACCTATCTTAGCTCG 59.870 52.174 0.00 0.00 31.60 5.03
3874 4159 3.129638 CGCTATCCCACCTATCTTAGCTC 59.870 52.174 0.00 0.00 32.00 4.09
3875 4160 3.093057 CGCTATCCCACCTATCTTAGCT 58.907 50.000 0.00 0.00 32.00 3.32
3876 4161 3.090037 TCGCTATCCCACCTATCTTAGC 58.910 50.000 0.00 0.00 0.00 3.09
3877 4162 4.590918 TCTCGCTATCCCACCTATCTTAG 58.409 47.826 0.00 0.00 0.00 2.18
3878 4163 4.288887 TCTCTCGCTATCCCACCTATCTTA 59.711 45.833 0.00 0.00 0.00 2.10
3879 4164 3.074687 TCTCTCGCTATCCCACCTATCTT 59.925 47.826 0.00 0.00 0.00 2.40
3880 4165 2.645297 TCTCTCGCTATCCCACCTATCT 59.355 50.000 0.00 0.00 0.00 1.98
3881 4166 3.074675 TCTCTCGCTATCCCACCTATC 57.925 52.381 0.00 0.00 0.00 2.08
3882 4167 3.245443 ACATCTCTCGCTATCCCACCTAT 60.245 47.826 0.00 0.00 0.00 2.57
3883 4168 2.108425 ACATCTCTCGCTATCCCACCTA 59.892 50.000 0.00 0.00 0.00 3.08
3884 4169 1.133325 ACATCTCTCGCTATCCCACCT 60.133 52.381 0.00 0.00 0.00 4.00
3885 4170 1.333177 ACATCTCTCGCTATCCCACC 58.667 55.000 0.00 0.00 0.00 4.61
3886 4171 4.551388 CTTTACATCTCTCGCTATCCCAC 58.449 47.826 0.00 0.00 0.00 4.61
3887 4172 4.855715 CTTTACATCTCTCGCTATCCCA 57.144 45.455 0.00 0.00 0.00 4.37


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.