Multiple sequence alignment - TraesCS3A01G266900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G266900 chr3A 100.000 3701 0 0 1 3701 491520714 491524414 0.000000e+00 6835.0
1 TraesCS3A01G266900 chr3A 85.941 505 45 13 1 486 606742446 606742943 1.970000e-142 516.0
2 TraesCS3A01G266900 chr3D 94.804 2444 80 21 547 2974 370618172 370620584 0.000000e+00 3766.0
3 TraesCS3A01G266900 chr3D 85.093 483 32 9 3245 3701 370620714 370621182 1.210000e-124 457.0
4 TraesCS3A01G266900 chr3D 100.000 29 0 0 2939 2967 370620653 370620681 2.000000e-03 54.7
5 TraesCS3A01G266900 chr3B 93.894 1261 41 12 572 1811 482001741 482002986 0.000000e+00 1869.0
6 TraesCS3A01G266900 chr3B 94.433 952 38 6 1932 2881 482004343 482005281 0.000000e+00 1450.0
7 TraesCS3A01G266900 chr3B 90.127 314 21 3 2868 3172 482006809 482007121 2.070000e-107 399.0
8 TraesCS3A01G266900 chr3B 79.815 540 78 17 3179 3701 482007157 482007682 7.550000e-97 364.0
9 TraesCS3A01G266900 chr3B 85.507 69 8 2 421 488 742774767 742774700 1.840000e-08 71.3
10 TraesCS3A01G266900 chr6D 94.149 376 22 0 1282 1657 159013201 159012826 1.150000e-159 573.0
11 TraesCS3A01G266900 chrUn 87.730 489 42 4 1 477 89862294 89862776 4.180000e-154 555.0
12 TraesCS3A01G266900 chr7D 93.004 243 10 1 1279 1514 534658963 534658721 7.610000e-92 348.0
13 TraesCS3A01G266900 chr1D 98.462 65 1 0 1450 1514 310145770 310145706 8.400000e-22 115.0
14 TraesCS3A01G266900 chr1D 82.609 115 17 3 1072 1184 463017443 463017556 8.460000e-17 99.0
15 TraesCS3A01G266900 chr1D 86.441 59 7 1 435 492 433785631 433785689 3.090000e-06 63.9
16 TraesCS3A01G266900 chr5B 96.970 66 2 0 1449 1514 474747684 474747619 1.090000e-20 111.0
17 TraesCS3A01G266900 chr1A 83.478 115 16 3 1072 1184 554887882 554887995 1.820000e-18 104.0
18 TraesCS3A01G266900 chr1B 83.178 107 16 2 1072 1177 638013779 638013884 3.040000e-16 97.1
19 TraesCS3A01G266900 chr1B 96.970 33 0 1 3509 3540 354547029 354547061 2.000000e-03 54.7
20 TraesCS3A01G266900 chr4B 89.091 55 4 2 435 488 21314309 21314362 2.390000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G266900 chr3A 491520714 491524414 3700 False 6835.0 6835 100.00000 1 3701 1 chr3A.!!$F1 3700
1 TraesCS3A01G266900 chr3D 370618172 370621182 3010 False 1425.9 3766 93.29900 547 3701 3 chr3D.!!$F1 3154
2 TraesCS3A01G266900 chr3B 482001741 482007682 5941 False 1020.5 1869 89.56725 572 3701 4 chr3B.!!$F1 3129

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
539 540 0.034756 CCGTGATGCCCGATCCAATA 59.965 55.0 0.00 0.00 0.00 1.90 F
1241 1266 0.391263 GACCGGGAGCGTTCTTGATT 60.391 55.0 6.32 0.00 0.00 2.57 F
2034 3303 0.177373 TGGCACTTGTTTGCATTGCA 59.823 45.0 7.38 7.38 44.94 4.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1520 1545 0.392193 AGATCTTGGCCTGCTTGACG 60.392 55.0 3.32 0.0 0.00 4.35 R
2665 3939 0.102300 GCACCGCTGTTGTTTTTCCT 59.898 50.0 0.00 0.0 0.00 3.36 R
3084 5906 0.941542 TGAGAAAAACCGAACTGGCG 59.058 50.0 0.00 0.0 43.94 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.292178 CGGAGCCATCCTCGCCTC 62.292 72.222 0.00 0.00 44.22 4.70
19 20 4.292178 GGAGCCATCCTCGCCTCG 62.292 72.222 0.00 0.00 42.94 4.63
20 21 4.959596 GAGCCATCCTCGCCTCGC 62.960 72.222 0.00 0.00 0.00 5.03
23 24 3.854669 CCATCCTCGCCTCGCCTT 61.855 66.667 0.00 0.00 0.00 4.35
24 25 2.587194 CATCCTCGCCTCGCCTTG 60.587 66.667 0.00 0.00 0.00 3.61
25 26 4.537433 ATCCTCGCCTCGCCTTGC 62.537 66.667 0.00 0.00 0.00 4.01
63 64 4.465512 CTTGTGTGCGCCGCATCC 62.466 66.667 17.54 9.70 41.91 3.51
86 87 4.874977 GCTCGCCTCTGCCCGTAC 62.875 72.222 0.00 0.00 0.00 3.67
87 88 4.208686 CTCGCCTCTGCCCGTACC 62.209 72.222 0.00 0.00 0.00 3.34
89 90 4.814294 CGCCTCTGCCCGTACCAC 62.814 72.222 0.00 0.00 0.00 4.16
90 91 4.814294 GCCTCTGCCCGTACCACG 62.814 72.222 0.00 0.00 42.11 4.94
91 92 4.814294 CCTCTGCCCGTACCACGC 62.814 72.222 0.00 0.00 40.91 5.34
92 93 3.760035 CTCTGCCCGTACCACGCT 61.760 66.667 0.00 0.00 40.91 5.07
93 94 3.701604 CTCTGCCCGTACCACGCTC 62.702 68.421 0.00 0.00 40.91 5.03
96 97 4.729856 GCCCGTACCACGCTCGTT 62.730 66.667 0.00 0.00 40.91 3.85
97 98 2.807895 CCCGTACCACGCTCGTTG 60.808 66.667 0.00 0.00 40.91 4.10
98 99 2.807895 CCGTACCACGCTCGTTGG 60.808 66.667 8.56 8.56 40.91 3.77
99 100 3.475774 CGTACCACGCTCGTTGGC 61.476 66.667 9.60 0.00 33.65 4.52
146 147 1.071471 AGCAGGAGGTGGTCAAACG 59.929 57.895 0.00 0.00 27.31 3.60
147 148 1.966451 GCAGGAGGTGGTCAAACGG 60.966 63.158 0.00 0.00 0.00 4.44
148 149 1.302511 CAGGAGGTGGTCAAACGGG 60.303 63.158 0.00 0.00 0.00 5.28
149 150 2.671963 GGAGGTGGTCAAACGGGC 60.672 66.667 0.00 0.00 0.00 6.13
150 151 2.671963 GAGGTGGTCAAACGGGCC 60.672 66.667 0.00 0.00 0.00 5.80
151 152 4.636435 AGGTGGTCAAACGGGCCG 62.636 66.667 27.06 27.06 0.00 6.13
153 154 4.941309 GTGGTCAAACGGGCCGGT 62.941 66.667 31.78 24.00 0.00 5.28
154 155 4.939368 TGGTCAAACGGGCCGGTG 62.939 66.667 31.78 26.12 0.00 4.94
176 177 4.827087 CATCGGAGCAGTGCGCCT 62.827 66.667 31.39 14.52 46.11 5.52
177 178 4.827087 ATCGGAGCAGTGCGCCTG 62.827 66.667 31.39 24.44 46.11 4.85
190 191 3.605664 GCCTGCACCTTGGCGTTT 61.606 61.111 0.00 0.00 39.71 3.60
191 192 2.336088 CCTGCACCTTGGCGTTTG 59.664 61.111 0.00 0.00 36.28 2.93
192 193 2.355009 CTGCACCTTGGCGTTTGC 60.355 61.111 0.00 0.00 41.71 3.68
193 194 3.136345 CTGCACCTTGGCGTTTGCA 62.136 57.895 3.30 3.30 45.35 4.08
194 195 2.658268 GCACCTTGGCGTTTGCAC 60.658 61.111 0.00 0.00 45.35 4.57
195 196 2.804167 CACCTTGGCGTTTGCACA 59.196 55.556 0.00 0.00 45.35 4.57
196 197 1.299316 CACCTTGGCGTTTGCACAG 60.299 57.895 0.00 0.00 45.35 3.66
197 198 1.453015 ACCTTGGCGTTTGCACAGA 60.453 52.632 0.00 0.00 45.35 3.41
198 199 1.283793 CCTTGGCGTTTGCACAGAG 59.716 57.895 0.00 0.00 45.35 3.35
199 200 1.283793 CTTGGCGTTTGCACAGAGG 59.716 57.895 0.00 0.00 45.35 3.69
200 201 1.153066 TTGGCGTTTGCACAGAGGA 60.153 52.632 0.00 0.00 45.35 3.71
201 202 1.165907 TTGGCGTTTGCACAGAGGAG 61.166 55.000 0.00 0.00 45.35 3.69
202 203 1.301716 GGCGTTTGCACAGAGGAGA 60.302 57.895 0.00 0.00 45.35 3.71
203 204 1.294659 GGCGTTTGCACAGAGGAGAG 61.295 60.000 0.00 0.00 45.35 3.20
204 205 0.319900 GCGTTTGCACAGAGGAGAGA 60.320 55.000 0.00 0.00 42.15 3.10
205 206 1.674221 GCGTTTGCACAGAGGAGAGAT 60.674 52.381 0.00 0.00 42.15 2.75
206 207 1.998315 CGTTTGCACAGAGGAGAGATG 59.002 52.381 0.00 0.00 0.00 2.90
207 208 2.611473 CGTTTGCACAGAGGAGAGATGT 60.611 50.000 0.00 0.00 0.00 3.06
208 209 2.740981 GTTTGCACAGAGGAGAGATGTG 59.259 50.000 0.31 0.31 45.59 3.21
209 210 0.900421 TGCACAGAGGAGAGATGTGG 59.100 55.000 6.67 0.00 43.56 4.17
210 211 0.177604 GCACAGAGGAGAGATGTGGG 59.822 60.000 6.67 0.00 43.56 4.61
211 212 0.829333 CACAGAGGAGAGATGTGGGG 59.171 60.000 0.00 0.00 40.47 4.96
212 213 0.415429 ACAGAGGAGAGATGTGGGGT 59.585 55.000 0.00 0.00 0.00 4.95
213 214 0.829333 CAGAGGAGAGATGTGGGGTG 59.171 60.000 0.00 0.00 0.00 4.61
214 215 0.326048 AGAGGAGAGATGTGGGGTGG 60.326 60.000 0.00 0.00 0.00 4.61
215 216 1.307343 AGGAGAGATGTGGGGTGGG 60.307 63.158 0.00 0.00 0.00 4.61
216 217 2.378634 GGAGAGATGTGGGGTGGGG 61.379 68.421 0.00 0.00 0.00 4.96
217 218 1.616628 GAGAGATGTGGGGTGGGGT 60.617 63.158 0.00 0.00 0.00 4.95
218 219 1.915078 GAGAGATGTGGGGTGGGGTG 61.915 65.000 0.00 0.00 0.00 4.61
219 220 2.941025 AGATGTGGGGTGGGGTGG 60.941 66.667 0.00 0.00 0.00 4.61
220 221 4.060667 GATGTGGGGTGGGGTGGG 62.061 72.222 0.00 0.00 0.00 4.61
228 229 4.041762 GTGGGGTGGGCCATCGAA 62.042 66.667 10.70 0.00 36.17 3.71
229 230 3.020647 TGGGGTGGGCCATCGAAT 61.021 61.111 10.70 0.00 36.17 3.34
230 231 1.694525 TGGGGTGGGCCATCGAATA 60.695 57.895 10.70 0.00 36.17 1.75
231 232 1.282653 TGGGGTGGGCCATCGAATAA 61.283 55.000 10.70 0.00 36.17 1.40
232 233 0.106419 GGGGTGGGCCATCGAATAAA 60.106 55.000 10.70 0.00 36.17 1.40
233 234 1.686741 GGGGTGGGCCATCGAATAAAA 60.687 52.381 10.70 0.00 36.17 1.52
234 235 2.316108 GGGTGGGCCATCGAATAAAAT 58.684 47.619 10.70 0.00 36.17 1.82
235 236 3.492337 GGGTGGGCCATCGAATAAAATA 58.508 45.455 10.70 0.00 36.17 1.40
236 237 3.892588 GGGTGGGCCATCGAATAAAATAA 59.107 43.478 10.70 0.00 36.17 1.40
237 238 4.022329 GGGTGGGCCATCGAATAAAATAAG 60.022 45.833 10.70 0.00 36.17 1.73
238 239 4.546570 GTGGGCCATCGAATAAAATAAGC 58.453 43.478 10.70 0.00 0.00 3.09
239 240 4.037446 GTGGGCCATCGAATAAAATAAGCA 59.963 41.667 10.70 0.00 0.00 3.91
240 241 4.278170 TGGGCCATCGAATAAAATAAGCAG 59.722 41.667 0.00 0.00 0.00 4.24
241 242 4.518970 GGGCCATCGAATAAAATAAGCAGA 59.481 41.667 4.39 0.00 0.00 4.26
242 243 5.335191 GGGCCATCGAATAAAATAAGCAGAG 60.335 44.000 4.39 0.00 0.00 3.35
243 244 5.335191 GGCCATCGAATAAAATAAGCAGAGG 60.335 44.000 0.00 0.00 0.00 3.69
244 245 5.470098 GCCATCGAATAAAATAAGCAGAGGA 59.530 40.000 0.00 0.00 0.00 3.71
245 246 6.017109 GCCATCGAATAAAATAAGCAGAGGAA 60.017 38.462 0.00 0.00 0.00 3.36
246 247 7.355778 CCATCGAATAAAATAAGCAGAGGAAC 58.644 38.462 0.00 0.00 0.00 3.62
247 248 6.583912 TCGAATAAAATAAGCAGAGGAACG 57.416 37.500 0.00 0.00 0.00 3.95
248 249 6.103997 TCGAATAAAATAAGCAGAGGAACGT 58.896 36.000 0.00 0.00 0.00 3.99
249 250 6.035650 TCGAATAAAATAAGCAGAGGAACGTG 59.964 38.462 0.00 0.00 0.00 4.49
250 251 6.436843 AATAAAATAAGCAGAGGAACGTGG 57.563 37.500 0.00 0.00 0.00 4.94
251 252 2.403252 AATAAGCAGAGGAACGTGGG 57.597 50.000 0.00 0.00 0.00 4.61
252 253 1.276622 ATAAGCAGAGGAACGTGGGT 58.723 50.000 0.00 0.00 0.00 4.51
253 254 0.320374 TAAGCAGAGGAACGTGGGTG 59.680 55.000 0.00 0.00 0.00 4.61
254 255 2.358737 GCAGAGGAACGTGGGTGG 60.359 66.667 0.00 0.00 0.00 4.61
255 256 2.347490 CAGAGGAACGTGGGTGGG 59.653 66.667 0.00 0.00 0.00 4.61
256 257 2.122547 AGAGGAACGTGGGTGGGT 60.123 61.111 0.00 0.00 0.00 4.51
257 258 2.032071 GAGGAACGTGGGTGGGTG 59.968 66.667 0.00 0.00 0.00 4.61
258 259 2.446994 AGGAACGTGGGTGGGTGA 60.447 61.111 0.00 0.00 0.00 4.02
259 260 2.032071 GGAACGTGGGTGGGTGAG 59.968 66.667 0.00 0.00 0.00 3.51
260 261 2.814835 GGAACGTGGGTGGGTGAGT 61.815 63.158 0.00 0.00 0.00 3.41
261 262 1.597027 GAACGTGGGTGGGTGAGTG 60.597 63.158 0.00 0.00 0.00 3.51
262 263 2.035237 GAACGTGGGTGGGTGAGTGA 62.035 60.000 0.00 0.00 0.00 3.41
263 264 2.030562 CGTGGGTGGGTGAGTGAC 59.969 66.667 0.00 0.00 0.00 3.67
264 265 2.802724 CGTGGGTGGGTGAGTGACA 61.803 63.158 0.00 0.00 0.00 3.58
265 266 1.071471 GTGGGTGGGTGAGTGACAG 59.929 63.158 0.00 0.00 0.00 3.51
266 267 2.146724 TGGGTGGGTGAGTGACAGG 61.147 63.158 0.00 0.00 0.00 4.00
267 268 2.147387 GGGTGGGTGAGTGACAGGT 61.147 63.158 0.00 0.00 0.00 4.00
268 269 1.071471 GGTGGGTGAGTGACAGGTG 59.929 63.158 0.00 0.00 0.00 4.00
269 270 1.071471 GTGGGTGAGTGACAGGTGG 59.929 63.158 0.00 0.00 0.00 4.61
270 271 2.146724 TGGGTGAGTGACAGGTGGG 61.147 63.158 0.00 0.00 0.00 4.61
271 272 2.750350 GGTGAGTGACAGGTGGGG 59.250 66.667 0.00 0.00 0.00 4.96
272 273 2.032681 GTGAGTGACAGGTGGGGC 59.967 66.667 0.00 0.00 0.00 5.80
273 274 2.447572 TGAGTGACAGGTGGGGCA 60.448 61.111 0.00 0.00 0.00 5.36
274 275 2.348998 GAGTGACAGGTGGGGCAG 59.651 66.667 0.00 0.00 0.00 4.85
275 276 3.252284 AGTGACAGGTGGGGCAGG 61.252 66.667 0.00 0.00 0.00 4.85
283 284 4.284550 GTGGGGCAGGCCTGAACA 62.285 66.667 37.21 25.91 36.10 3.18
284 285 4.284550 TGGGGCAGGCCTGAACAC 62.285 66.667 37.21 27.57 36.10 3.32
285 286 4.284550 GGGGCAGGCCTGAACACA 62.285 66.667 37.21 0.00 36.10 3.72
286 287 2.674380 GGGCAGGCCTGAACACAG 60.674 66.667 37.21 8.47 36.10 3.66
293 294 2.738521 CCTGAACACAGGCGGACG 60.739 66.667 3.31 0.00 43.51 4.79
294 295 2.338620 CTGAACACAGGCGGACGA 59.661 61.111 0.00 0.00 0.00 4.20
295 296 1.734477 CTGAACACAGGCGGACGAG 60.734 63.158 0.00 0.00 0.00 4.18
296 297 2.432628 GAACACAGGCGGACGAGG 60.433 66.667 0.00 0.00 0.00 4.63
297 298 4.681978 AACACAGGCGGACGAGGC 62.682 66.667 0.00 0.00 0.00 4.70
306 307 3.749064 GGACGAGGCGAGTGCAGA 61.749 66.667 0.00 0.00 45.35 4.26
307 308 2.258591 GACGAGGCGAGTGCAGAA 59.741 61.111 0.00 0.00 45.35 3.02
308 309 1.372997 GACGAGGCGAGTGCAGAAA 60.373 57.895 0.00 0.00 45.35 2.52
309 310 0.944311 GACGAGGCGAGTGCAGAAAA 60.944 55.000 0.00 0.00 45.35 2.29
310 311 1.222115 ACGAGGCGAGTGCAGAAAAC 61.222 55.000 0.00 0.00 45.35 2.43
311 312 1.493311 GAGGCGAGTGCAGAAAACG 59.507 57.895 0.00 0.00 45.35 3.60
312 313 1.222115 GAGGCGAGTGCAGAAAACGT 61.222 55.000 0.00 0.00 45.35 3.99
313 314 1.204312 GGCGAGTGCAGAAAACGTC 59.796 57.895 0.00 0.00 45.35 4.34
314 315 1.495584 GGCGAGTGCAGAAAACGTCA 61.496 55.000 0.00 0.00 45.35 4.35
315 316 0.111089 GCGAGTGCAGAAAACGTCAG 60.111 55.000 0.00 0.00 42.15 3.51
316 317 0.111089 CGAGTGCAGAAAACGTCAGC 60.111 55.000 0.00 0.00 39.16 4.26
317 318 1.221414 GAGTGCAGAAAACGTCAGCT 58.779 50.000 0.00 0.00 39.43 4.24
318 319 1.599542 GAGTGCAGAAAACGTCAGCTT 59.400 47.619 0.00 0.00 39.43 3.74
319 320 2.017049 AGTGCAGAAAACGTCAGCTTT 58.983 42.857 0.00 0.00 39.43 3.51
320 321 2.111756 GTGCAGAAAACGTCAGCTTTG 58.888 47.619 0.00 0.00 39.43 2.77
321 322 1.742831 TGCAGAAAACGTCAGCTTTGT 59.257 42.857 0.00 0.00 39.43 2.83
322 323 2.111756 GCAGAAAACGTCAGCTTTGTG 58.888 47.619 3.85 3.85 35.91 3.33
323 324 2.477863 GCAGAAAACGTCAGCTTTGTGT 60.478 45.455 8.73 0.00 35.91 3.72
324 325 3.354397 CAGAAAACGTCAGCTTTGTGTC 58.646 45.455 0.00 0.00 0.00 3.67
325 326 2.354821 AGAAAACGTCAGCTTTGTGTCC 59.645 45.455 0.00 0.00 0.00 4.02
326 327 0.655733 AAACGTCAGCTTTGTGTCCG 59.344 50.000 0.00 0.00 0.00 4.79
327 328 1.772063 AACGTCAGCTTTGTGTCCGC 61.772 55.000 0.00 0.00 0.00 5.54
328 329 2.946762 GTCAGCTTTGTGTCCGCC 59.053 61.111 0.00 0.00 0.00 6.13
329 330 2.664851 TCAGCTTTGTGTCCGCCG 60.665 61.111 0.00 0.00 0.00 6.46
330 331 2.972505 CAGCTTTGTGTCCGCCGT 60.973 61.111 0.00 0.00 0.00 5.68
331 332 2.665185 AGCTTTGTGTCCGCCGTC 60.665 61.111 0.00 0.00 0.00 4.79
332 333 4.072088 GCTTTGTGTCCGCCGTCG 62.072 66.667 0.00 0.00 0.00 5.12
333 334 2.355363 CTTTGTGTCCGCCGTCGA 60.355 61.111 0.00 0.00 38.10 4.20
334 335 2.654912 CTTTGTGTCCGCCGTCGAC 61.655 63.158 5.18 5.18 38.10 4.20
335 336 4.651008 TTGTGTCCGCCGTCGACC 62.651 66.667 10.58 0.00 38.10 4.79
339 340 4.668118 GTCCGCCGTCGACCCAAA 62.668 66.667 10.58 0.00 38.10 3.28
340 341 3.697747 TCCGCCGTCGACCCAAAT 61.698 61.111 10.58 0.00 38.10 2.32
341 342 3.496131 CCGCCGTCGACCCAAATG 61.496 66.667 10.58 0.00 38.10 2.32
342 343 2.740826 CGCCGTCGACCCAAATGT 60.741 61.111 10.58 0.00 38.10 2.71
343 344 2.867472 GCCGTCGACCCAAATGTG 59.133 61.111 10.58 0.00 0.00 3.21
344 345 2.686816 GCCGTCGACCCAAATGTGG 61.687 63.158 10.58 3.64 45.53 4.17
345 346 1.302192 CCGTCGACCCAAATGTGGT 60.302 57.895 10.58 0.00 44.30 4.16
346 347 0.887387 CCGTCGACCCAAATGTGGTT 60.887 55.000 10.58 0.00 44.30 3.67
347 348 0.515564 CGTCGACCCAAATGTGGTTC 59.484 55.000 10.58 0.00 44.30 3.62
348 349 1.600023 GTCGACCCAAATGTGGTTCA 58.400 50.000 3.51 0.00 44.30 3.18
349 350 1.950909 GTCGACCCAAATGTGGTTCAA 59.049 47.619 3.51 0.00 44.30 2.69
350 351 2.359531 GTCGACCCAAATGTGGTTCAAA 59.640 45.455 3.51 0.00 44.30 2.69
351 352 3.005367 GTCGACCCAAATGTGGTTCAAAT 59.995 43.478 3.51 0.00 44.30 2.32
352 353 3.639094 TCGACCCAAATGTGGTTCAAATT 59.361 39.130 0.00 0.00 44.30 1.82
353 354 4.100189 TCGACCCAAATGTGGTTCAAATTT 59.900 37.500 0.00 0.00 44.30 1.82
354 355 5.302059 TCGACCCAAATGTGGTTCAAATTTA 59.698 36.000 0.00 0.00 44.30 1.40
355 356 5.986135 CGACCCAAATGTGGTTCAAATTTAA 59.014 36.000 0.00 0.00 44.30 1.52
356 357 6.480320 CGACCCAAATGTGGTTCAAATTTAAA 59.520 34.615 0.00 0.00 44.30 1.52
357 358 7.011482 CGACCCAAATGTGGTTCAAATTTAAAA 59.989 33.333 0.00 0.00 44.30 1.52
358 359 8.759481 ACCCAAATGTGGTTCAAATTTAAAAT 57.241 26.923 0.00 0.00 44.30 1.82
359 360 8.628280 ACCCAAATGTGGTTCAAATTTAAAATG 58.372 29.630 0.00 0.00 44.30 2.32
360 361 8.081025 CCCAAATGTGGTTCAAATTTAAAATGG 58.919 33.333 0.00 0.00 44.30 3.16
361 362 8.844244 CCAAATGTGGTTCAAATTTAAAATGGA 58.156 29.630 0.00 0.00 40.42 3.41
366 367 9.618890 TGTGGTTCAAATTTAAAATGGAAATGA 57.381 25.926 0.00 0.00 0.00 2.57
372 373 9.160496 TCAAATTTAAAATGGAAATGAATCCGG 57.840 29.630 0.00 0.00 42.76 5.14
373 374 9.160496 CAAATTTAAAATGGAAATGAATCCGGA 57.840 29.630 6.61 6.61 42.76 5.14
374 375 8.716646 AATTTAAAATGGAAATGAATCCGGAC 57.283 30.769 6.12 0.00 42.76 4.79
375 376 6.842437 TTAAAATGGAAATGAATCCGGACA 57.158 33.333 6.12 0.27 42.76 4.02
376 377 4.718940 AAATGGAAATGAATCCGGACAC 57.281 40.909 6.12 4.23 42.76 3.67
377 378 2.869101 TGGAAATGAATCCGGACACA 57.131 45.000 6.12 10.95 42.76 3.72
378 379 3.147553 TGGAAATGAATCCGGACACAA 57.852 42.857 6.12 0.00 42.76 3.33
379 380 3.491342 TGGAAATGAATCCGGACACAAA 58.509 40.909 6.12 0.00 42.76 2.83
380 381 3.891977 TGGAAATGAATCCGGACACAAAA 59.108 39.130 6.12 0.00 42.76 2.44
381 382 4.526262 TGGAAATGAATCCGGACACAAAAT 59.474 37.500 6.12 0.74 42.76 1.82
382 383 5.712446 TGGAAATGAATCCGGACACAAAATA 59.288 36.000 6.12 0.00 42.76 1.40
383 384 6.127758 TGGAAATGAATCCGGACACAAAATAG 60.128 38.462 6.12 0.00 42.76 1.73
384 385 6.094881 GGAAATGAATCCGGACACAAAATAGA 59.905 38.462 6.12 0.00 0.00 1.98
385 386 6.436843 AATGAATCCGGACACAAAATAGAC 57.563 37.500 6.12 0.00 0.00 2.59
386 387 4.900684 TGAATCCGGACACAAAATAGACA 58.099 39.130 6.12 0.00 0.00 3.41
387 388 5.496556 TGAATCCGGACACAAAATAGACAT 58.503 37.500 6.12 0.00 0.00 3.06
388 389 5.353956 TGAATCCGGACACAAAATAGACATG 59.646 40.000 6.12 0.00 0.00 3.21
389 390 4.545208 TCCGGACACAAAATAGACATGA 57.455 40.909 0.00 0.00 0.00 3.07
390 391 4.900684 TCCGGACACAAAATAGACATGAA 58.099 39.130 0.00 0.00 0.00 2.57
391 392 5.309638 TCCGGACACAAAATAGACATGAAA 58.690 37.500 0.00 0.00 0.00 2.69
392 393 5.180492 TCCGGACACAAAATAGACATGAAAC 59.820 40.000 0.00 0.00 0.00 2.78
393 394 5.079406 CGGACACAAAATAGACATGAAACG 58.921 41.667 0.00 0.00 0.00 3.60
394 395 5.107259 CGGACACAAAATAGACATGAAACGA 60.107 40.000 0.00 0.00 0.00 3.85
395 396 6.565060 CGGACACAAAATAGACATGAAACGAA 60.565 38.462 0.00 0.00 0.00 3.85
396 397 7.136119 GGACACAAAATAGACATGAAACGAAA 58.864 34.615 0.00 0.00 0.00 3.46
397 398 7.646130 GGACACAAAATAGACATGAAACGAAAA 59.354 33.333 0.00 0.00 0.00 2.29
398 399 9.180678 GACACAAAATAGACATGAAACGAAAAT 57.819 29.630 0.00 0.00 0.00 1.82
399 400 8.967218 ACACAAAATAGACATGAAACGAAAATG 58.033 29.630 0.00 0.00 0.00 2.32
400 401 9.179552 CACAAAATAGACATGAAACGAAAATGA 57.820 29.630 0.00 0.00 0.00 2.57
401 402 9.743057 ACAAAATAGACATGAAACGAAAATGAA 57.257 25.926 0.00 0.00 0.00 2.57
405 406 9.778993 AATAGACATGAAACGAAAATGAATCTG 57.221 29.630 0.00 0.00 0.00 2.90
406 407 6.088824 AGACATGAAACGAAAATGAATCTGC 58.911 36.000 0.00 0.00 0.00 4.26
407 408 4.853196 ACATGAAACGAAAATGAATCTGCG 59.147 37.500 0.00 0.00 0.00 5.18
408 409 3.233578 TGAAACGAAAATGAATCTGCGC 58.766 40.909 0.00 0.00 0.00 6.09
409 410 3.058293 TGAAACGAAAATGAATCTGCGCT 60.058 39.130 9.73 0.00 0.00 5.92
410 411 3.559238 AACGAAAATGAATCTGCGCTT 57.441 38.095 9.73 0.00 0.00 4.68
411 412 2.855180 ACGAAAATGAATCTGCGCTTG 58.145 42.857 9.73 1.08 0.00 4.01
412 413 2.179589 CGAAAATGAATCTGCGCTTGG 58.820 47.619 9.73 0.00 0.00 3.61
413 414 2.533266 GAAAATGAATCTGCGCTTGGG 58.467 47.619 9.73 0.00 0.00 4.12
414 415 1.549203 AAATGAATCTGCGCTTGGGT 58.451 45.000 9.73 0.00 0.00 4.51
415 416 1.098050 AATGAATCTGCGCTTGGGTC 58.902 50.000 9.73 0.01 0.00 4.46
416 417 1.091771 ATGAATCTGCGCTTGGGTCG 61.092 55.000 9.73 0.00 0.00 4.79
417 418 1.447838 GAATCTGCGCTTGGGTCGA 60.448 57.895 9.73 0.00 0.00 4.20
418 419 0.811616 GAATCTGCGCTTGGGTCGAT 60.812 55.000 9.73 0.00 0.00 3.59
419 420 1.091771 AATCTGCGCTTGGGTCGATG 61.092 55.000 9.73 0.00 0.00 3.84
420 421 2.244117 ATCTGCGCTTGGGTCGATGT 62.244 55.000 9.73 0.00 0.00 3.06
421 422 2.031919 TGCGCTTGGGTCGATGTT 59.968 55.556 9.73 0.00 0.00 2.71
422 423 1.577328 CTGCGCTTGGGTCGATGTTT 61.577 55.000 9.73 0.00 0.00 2.83
423 424 1.169661 TGCGCTTGGGTCGATGTTTT 61.170 50.000 9.73 0.00 0.00 2.43
424 425 0.039527 GCGCTTGGGTCGATGTTTTT 60.040 50.000 0.00 0.00 0.00 1.94
425 426 1.198178 GCGCTTGGGTCGATGTTTTTA 59.802 47.619 0.00 0.00 0.00 1.52
426 427 2.159435 GCGCTTGGGTCGATGTTTTTAT 60.159 45.455 0.00 0.00 0.00 1.40
427 428 3.672241 GCGCTTGGGTCGATGTTTTTATT 60.672 43.478 0.00 0.00 0.00 1.40
428 429 4.095610 CGCTTGGGTCGATGTTTTTATTC 58.904 43.478 0.00 0.00 0.00 1.75
429 430 4.378978 CGCTTGGGTCGATGTTTTTATTCA 60.379 41.667 0.00 0.00 0.00 2.57
430 431 4.857037 GCTTGGGTCGATGTTTTTATTCAC 59.143 41.667 0.00 0.00 0.00 3.18
431 432 5.563867 GCTTGGGTCGATGTTTTTATTCACA 60.564 40.000 0.00 0.00 0.00 3.58
432 433 5.365403 TGGGTCGATGTTTTTATTCACAC 57.635 39.130 0.00 0.00 0.00 3.82
433 434 5.067273 TGGGTCGATGTTTTTATTCACACT 58.933 37.500 0.00 0.00 0.00 3.55
434 435 5.049060 TGGGTCGATGTTTTTATTCACACTG 60.049 40.000 0.00 0.00 0.00 3.66
435 436 5.180492 GGGTCGATGTTTTTATTCACACTGA 59.820 40.000 0.00 0.00 0.00 3.41
436 437 6.077838 GGTCGATGTTTTTATTCACACTGAC 58.922 40.000 0.00 0.00 33.04 3.51
437 438 6.077838 GTCGATGTTTTTATTCACACTGACC 58.922 40.000 0.00 0.00 29.95 4.02
438 439 5.180492 TCGATGTTTTTATTCACACTGACCC 59.820 40.000 0.00 0.00 0.00 4.46
439 440 5.049060 CGATGTTTTTATTCACACTGACCCA 60.049 40.000 0.00 0.00 0.00 4.51
440 441 6.514212 CGATGTTTTTATTCACACTGACCCAA 60.514 38.462 0.00 0.00 0.00 4.12
441 442 6.531503 TGTTTTTATTCACACTGACCCAAA 57.468 33.333 0.00 0.00 0.00 3.28
442 443 6.334202 TGTTTTTATTCACACTGACCCAAAC 58.666 36.000 0.00 0.00 0.00 2.93
443 444 6.071334 TGTTTTTATTCACACTGACCCAAACA 60.071 34.615 0.00 0.00 0.00 2.83
444 445 6.531503 TTTTATTCACACTGACCCAAACAA 57.468 33.333 0.00 0.00 0.00 2.83
445 446 6.531503 TTTATTCACACTGACCCAAACAAA 57.468 33.333 0.00 0.00 0.00 2.83
446 447 3.859411 TTCACACTGACCCAAACAAAC 57.141 42.857 0.00 0.00 0.00 2.93
447 448 1.740585 TCACACTGACCCAAACAAACG 59.259 47.619 0.00 0.00 0.00 3.60
448 449 1.099689 ACACTGACCCAAACAAACGG 58.900 50.000 0.00 0.00 0.00 4.44
449 450 0.248866 CACTGACCCAAACAAACGGC 60.249 55.000 0.00 0.00 0.00 5.68
450 451 1.008995 CTGACCCAAACAAACGGCG 60.009 57.895 4.80 4.80 0.00 6.46
451 452 2.333581 GACCCAAACAAACGGCGG 59.666 61.111 13.24 0.00 0.00 6.13
452 453 3.834447 GACCCAAACAAACGGCGGC 62.834 63.158 13.24 0.00 0.00 6.53
453 454 3.905678 CCCAAACAAACGGCGGCA 61.906 61.111 13.24 0.00 0.00 5.69
454 455 2.354539 CCAAACAAACGGCGGCAG 60.355 61.111 13.24 0.00 0.00 4.85
455 456 2.718731 CAAACAAACGGCGGCAGA 59.281 55.556 13.24 0.00 0.00 4.26
456 457 1.657181 CAAACAAACGGCGGCAGAC 60.657 57.895 13.24 0.00 0.00 3.51
467 468 2.877691 GGCAGACGAAATGGGCAC 59.122 61.111 0.00 0.00 0.00 5.01
468 469 1.675641 GGCAGACGAAATGGGCACT 60.676 57.895 0.00 0.00 0.00 4.40
469 470 0.392461 GGCAGACGAAATGGGCACTA 60.392 55.000 0.00 0.00 0.00 2.74
470 471 0.727398 GCAGACGAAATGGGCACTAC 59.273 55.000 0.00 0.00 0.00 2.73
471 472 1.369625 CAGACGAAATGGGCACTACC 58.630 55.000 0.00 0.00 37.93 3.18
472 473 0.108329 AGACGAAATGGGCACTACCG 60.108 55.000 0.00 0.00 40.62 4.02
473 474 0.390735 GACGAAATGGGCACTACCGT 60.391 55.000 0.00 0.00 40.62 4.83
474 475 0.035739 ACGAAATGGGCACTACCGTT 59.964 50.000 0.00 0.00 41.41 4.44
475 476 0.446222 CGAAATGGGCACTACCGTTG 59.554 55.000 0.00 0.00 39.61 4.10
476 477 0.808755 GAAATGGGCACTACCGTTGG 59.191 55.000 0.00 0.00 39.61 3.77
477 478 0.402504 AAATGGGCACTACCGTTGGA 59.597 50.000 0.00 0.00 39.61 3.53
478 479 0.035439 AATGGGCACTACCGTTGGAG 60.035 55.000 0.00 0.00 38.30 3.86
479 480 1.198759 ATGGGCACTACCGTTGGAGT 61.199 55.000 0.00 0.00 40.62 3.85
480 481 1.373812 GGGCACTACCGTTGGAGTT 59.626 57.895 0.00 0.00 40.62 3.01
481 482 0.953960 GGGCACTACCGTTGGAGTTG 60.954 60.000 0.00 0.00 40.62 3.16
482 483 1.574702 GGCACTACCGTTGGAGTTGC 61.575 60.000 0.00 0.00 0.00 4.17
483 484 0.602905 GCACTACCGTTGGAGTTGCT 60.603 55.000 0.00 0.00 0.00 3.91
484 485 1.429463 CACTACCGTTGGAGTTGCTC 58.571 55.000 0.00 0.00 0.00 4.26
485 486 1.000955 CACTACCGTTGGAGTTGCTCT 59.999 52.381 0.00 0.00 0.00 4.09
486 487 2.230508 CACTACCGTTGGAGTTGCTCTA 59.769 50.000 0.00 0.00 0.00 2.43
487 488 2.895404 ACTACCGTTGGAGTTGCTCTAA 59.105 45.455 0.00 0.00 0.00 2.10
488 489 3.514309 ACTACCGTTGGAGTTGCTCTAAT 59.486 43.478 0.00 0.00 33.81 1.73
489 490 3.418684 ACCGTTGGAGTTGCTCTAATT 57.581 42.857 0.00 0.00 33.81 1.40
490 491 4.546829 ACCGTTGGAGTTGCTCTAATTA 57.453 40.909 0.00 0.00 33.81 1.40
491 492 4.251268 ACCGTTGGAGTTGCTCTAATTAC 58.749 43.478 0.00 0.00 33.81 1.89
492 493 3.306166 CCGTTGGAGTTGCTCTAATTACG 59.694 47.826 0.00 0.00 33.81 3.18
493 494 3.241995 CGTTGGAGTTGCTCTAATTACGC 60.242 47.826 0.00 0.00 33.81 4.42
494 495 3.603158 TGGAGTTGCTCTAATTACGCA 57.397 42.857 1.57 1.57 0.00 5.24
495 496 3.932822 TGGAGTTGCTCTAATTACGCAA 58.067 40.909 11.46 11.46 40.93 4.85
496 497 4.320023 TGGAGTTGCTCTAATTACGCAAA 58.680 39.130 15.31 2.50 44.22 3.68
497 498 4.757657 TGGAGTTGCTCTAATTACGCAAAA 59.242 37.500 15.31 4.09 44.22 2.44
498 499 5.239744 TGGAGTTGCTCTAATTACGCAAAAA 59.760 36.000 15.31 3.85 44.22 1.94
499 500 5.567915 GGAGTTGCTCTAATTACGCAAAAAC 59.432 40.000 15.31 7.63 44.22 2.43
500 501 6.313744 AGTTGCTCTAATTACGCAAAAACT 57.686 33.333 15.31 9.23 44.22 2.66
501 502 6.371389 AGTTGCTCTAATTACGCAAAAACTC 58.629 36.000 15.31 6.60 44.22 3.01
502 503 5.933187 TGCTCTAATTACGCAAAAACTCA 57.067 34.783 2.97 0.00 0.00 3.41
503 504 6.494893 TGCTCTAATTACGCAAAAACTCAT 57.505 33.333 2.97 0.00 0.00 2.90
504 505 7.603963 TGCTCTAATTACGCAAAAACTCATA 57.396 32.000 2.97 0.00 0.00 2.15
505 506 7.461107 TGCTCTAATTACGCAAAAACTCATAC 58.539 34.615 2.97 0.00 0.00 2.39
506 507 6.623743 GCTCTAATTACGCAAAAACTCATACG 59.376 38.462 0.00 0.00 0.00 3.06
507 508 7.463648 GCTCTAATTACGCAAAAACTCATACGA 60.464 37.037 0.00 0.00 0.00 3.43
508 509 7.891782 TCTAATTACGCAAAAACTCATACGAG 58.108 34.615 0.00 0.00 45.49 4.18
509 510 6.715344 AATTACGCAAAAACTCATACGAGA 57.285 33.333 0.00 0.00 42.34 4.04
510 511 6.715344 ATTACGCAAAAACTCATACGAGAA 57.285 33.333 0.00 0.00 42.34 2.87
511 512 6.528014 TTACGCAAAAACTCATACGAGAAA 57.472 33.333 0.00 0.00 42.34 2.52
512 513 5.412526 ACGCAAAAACTCATACGAGAAAA 57.587 34.783 0.00 0.00 42.34 2.29
513 514 5.997385 ACGCAAAAACTCATACGAGAAAAT 58.003 33.333 0.00 0.00 42.34 1.82
514 515 6.077838 ACGCAAAAACTCATACGAGAAAATC 58.922 36.000 0.00 0.00 42.34 2.17
515 516 6.073222 ACGCAAAAACTCATACGAGAAAATCT 60.073 34.615 0.00 0.00 42.34 2.40
516 517 6.462949 CGCAAAAACTCATACGAGAAAATCTC 59.537 38.462 0.00 0.00 42.34 2.75
517 518 7.522374 GCAAAAACTCATACGAGAAAATCTCT 58.478 34.615 0.00 0.00 41.26 3.10
518 519 8.017946 GCAAAAACTCATACGAGAAAATCTCTT 58.982 33.333 0.00 0.00 41.26 2.85
519 520 9.322776 CAAAAACTCATACGAGAAAATCTCTTG 57.677 33.333 0.00 1.91 41.26 3.02
520 521 6.654793 AACTCATACGAGAAAATCTCTTGC 57.345 37.500 0.00 0.00 41.26 4.01
521 522 5.112686 ACTCATACGAGAAAATCTCTTGCC 58.887 41.667 0.00 0.00 41.26 4.52
522 523 4.112634 TCATACGAGAAAATCTCTTGCCG 58.887 43.478 5.88 0.00 41.26 5.69
523 524 2.457366 ACGAGAAAATCTCTTGCCGT 57.543 45.000 5.88 0.00 41.26 5.68
524 525 2.069273 ACGAGAAAATCTCTTGCCGTG 58.931 47.619 5.88 0.00 41.26 4.94
525 526 2.288825 ACGAGAAAATCTCTTGCCGTGA 60.289 45.455 5.88 0.00 41.26 4.35
526 527 2.932614 CGAGAAAATCTCTTGCCGTGAT 59.067 45.455 5.88 0.00 41.26 3.06
527 528 3.242220 CGAGAAAATCTCTTGCCGTGATG 60.242 47.826 5.88 0.00 41.26 3.07
528 529 2.421424 AGAAAATCTCTTGCCGTGATGC 59.579 45.455 0.00 0.00 0.00 3.91
529 530 1.098050 AAATCTCTTGCCGTGATGCC 58.902 50.000 0.00 0.00 0.00 4.40
530 531 0.749454 AATCTCTTGCCGTGATGCCC 60.749 55.000 0.00 0.00 0.00 5.36
531 532 2.930385 ATCTCTTGCCGTGATGCCCG 62.930 60.000 0.00 0.00 0.00 6.13
532 533 3.664025 CTCTTGCCGTGATGCCCGA 62.664 63.158 0.00 0.00 0.00 5.14
533 534 2.514592 CTTGCCGTGATGCCCGAT 60.515 61.111 0.00 0.00 0.00 4.18
534 535 2.513666 TTGCCGTGATGCCCGATC 60.514 61.111 0.00 0.00 0.00 3.69
535 536 4.545706 TGCCGTGATGCCCGATCC 62.546 66.667 0.00 0.00 0.00 3.36
536 537 4.545706 GCCGTGATGCCCGATCCA 62.546 66.667 0.00 0.00 0.00 3.41
537 538 2.189257 CCGTGATGCCCGATCCAA 59.811 61.111 0.00 0.00 0.00 3.53
538 539 1.227943 CCGTGATGCCCGATCCAAT 60.228 57.895 0.00 0.00 0.00 3.16
539 540 0.034756 CCGTGATGCCCGATCCAATA 59.965 55.000 0.00 0.00 0.00 1.90
540 541 1.148310 CGTGATGCCCGATCCAATAC 58.852 55.000 0.00 0.00 0.00 1.89
541 542 1.540146 CGTGATGCCCGATCCAATACA 60.540 52.381 0.00 0.00 0.00 2.29
542 543 2.783135 GTGATGCCCGATCCAATACAT 58.217 47.619 0.00 0.00 0.00 2.29
543 544 2.744202 GTGATGCCCGATCCAATACATC 59.256 50.000 0.00 0.00 35.58 3.06
544 545 2.371510 TGATGCCCGATCCAATACATCA 59.628 45.455 0.00 0.00 41.00 3.07
545 546 3.009363 TGATGCCCGATCCAATACATCAT 59.991 43.478 0.00 0.00 39.05 2.45
716 717 1.347707 TGGTTCCAGATCCAGTGACAC 59.652 52.381 0.00 0.00 0.00 3.67
727 728 3.406361 GTGACACTGCTCGCCACG 61.406 66.667 0.00 0.00 0.00 4.94
740 741 1.446966 GCCACGAGACAAGAGCTCC 60.447 63.158 10.93 0.00 0.00 4.70
795 796 8.171840 GGCGAAGAATATCTTAAGCATACAATC 58.828 37.037 16.50 0.00 40.01 2.67
796 797 8.712363 GCGAAGAATATCTTAAGCATACAATCA 58.288 33.333 12.31 0.00 36.73 2.57
922 923 3.879892 GGCTTTCCAGCTAGTAATTCAGG 59.120 47.826 0.00 0.00 46.44 3.86
944 945 2.202570 CGTCCGGTTACTGGCTCG 60.203 66.667 5.12 9.04 0.00 5.03
945 946 2.183555 GTCCGGTTACTGGCTCGG 59.816 66.667 5.12 0.00 43.42 4.63
946 947 3.766691 TCCGGTTACTGGCTCGGC 61.767 66.667 5.12 0.00 41.98 5.54
947 948 3.771160 CCGGTTACTGGCTCGGCT 61.771 66.667 0.00 0.00 35.95 5.52
948 949 2.202756 CGGTTACTGGCTCGGCTC 60.203 66.667 0.00 0.00 0.00 4.70
970 986 1.000283 CAGGTGATACAGATCGGCCTC 60.000 57.143 0.00 0.00 37.74 4.70
1068 1084 3.982372 CTTCTTCGCGCCGGCACTA 62.982 63.158 28.98 5.74 39.92 2.74
1135 1151 3.766691 TCGGCAACTACTCCGGGC 61.767 66.667 0.00 0.00 45.31 6.13
1239 1264 2.654877 GACCGGGAGCGTTCTTGA 59.345 61.111 6.32 0.00 0.00 3.02
1240 1265 1.218316 GACCGGGAGCGTTCTTGAT 59.782 57.895 6.32 0.00 0.00 2.57
1241 1266 0.391263 GACCGGGAGCGTTCTTGATT 60.391 55.000 6.32 0.00 0.00 2.57
1242 1267 0.899720 ACCGGGAGCGTTCTTGATTA 59.100 50.000 6.32 0.00 0.00 1.75
1837 1893 8.728088 AACTGTTGCTTCAGTAAATTTAATCG 57.272 30.769 12.99 0.00 46.25 3.34
1852 1908 8.911247 AAATTTAATCGGCTACTGACAAATTC 57.089 30.769 9.35 0.00 29.76 2.17
1908 1969 2.926200 GTTCAGTGTGATCGATCTGTGG 59.074 50.000 25.02 11.57 0.00 4.17
1910 1971 3.352648 TCAGTGTGATCGATCTGTGGTA 58.647 45.455 25.02 1.75 0.00 3.25
1930 3198 8.034804 TGTGGTAATCGAATCAGATACCATATG 58.965 37.037 10.04 0.00 37.03 1.78
1940 3208 9.722056 GAATCAGATACCATATGTTTGACAAAC 57.278 33.333 21.68 21.68 41.73 2.93
1944 3212 8.303156 CAGATACCATATGTTTGACAAACCAAA 58.697 33.333 24.58 12.54 40.67 3.28
2030 3299 3.543665 ACAATTTGGCACTTGTTTGCAT 58.456 36.364 8.42 0.00 44.94 3.96
2031 3300 3.946558 ACAATTTGGCACTTGTTTGCATT 59.053 34.783 8.42 0.00 44.94 3.56
2032 3301 4.201930 ACAATTTGGCACTTGTTTGCATTG 60.202 37.500 8.42 2.02 44.94 2.82
2033 3302 1.297664 TTGGCACTTGTTTGCATTGC 58.702 45.000 0.46 0.46 44.94 3.56
2034 3303 0.177373 TGGCACTTGTTTGCATTGCA 59.823 45.000 7.38 7.38 44.94 4.08
2244 3513 2.622436 GTTGTGGCTGGAGTATCACTC 58.378 52.381 0.00 0.00 44.32 3.51
2330 3604 5.915628 TGGTATCCTCCAGGTATGTGATAT 58.084 41.667 0.00 0.00 36.34 1.63
2331 3605 5.958380 TGGTATCCTCCAGGTATGTGATATC 59.042 44.000 0.00 0.00 36.34 1.63
2333 3607 6.097554 GGTATCCTCCAGGTATGTGATATCTG 59.902 46.154 3.98 0.00 42.37 2.90
2334 3608 3.834813 TCCTCCAGGTATGTGATATCTGC 59.165 47.826 3.98 0.00 41.58 4.26
2335 3609 3.837146 CCTCCAGGTATGTGATATCTGCT 59.163 47.826 3.98 0.00 41.58 4.24
2337 3611 5.474578 TCCAGGTATGTGATATCTGCTTC 57.525 43.478 3.98 0.00 41.58 3.86
2338 3612 4.284490 TCCAGGTATGTGATATCTGCTTCC 59.716 45.833 3.98 2.06 41.58 3.46
2340 3614 4.285517 CAGGTATGTGATATCTGCTTCCCT 59.714 45.833 3.98 0.05 37.19 4.20
2341 3615 5.481824 CAGGTATGTGATATCTGCTTCCCTA 59.518 44.000 3.98 0.00 37.19 3.53
2342 3616 6.155910 CAGGTATGTGATATCTGCTTCCCTAT 59.844 42.308 3.98 0.00 37.19 2.57
2343 3617 7.343057 CAGGTATGTGATATCTGCTTCCCTATA 59.657 40.741 3.98 0.00 37.19 1.31
2344 3618 8.070604 AGGTATGTGATATCTGCTTCCCTATAT 58.929 37.037 3.98 0.00 0.00 0.86
2345 3619 8.147058 GGTATGTGATATCTGCTTCCCTATATG 58.853 40.741 3.98 0.00 0.00 1.78
2346 3620 6.550938 TGTGATATCTGCTTCCCTATATGG 57.449 41.667 3.98 0.00 0.00 2.74
2347 3621 6.263754 TGTGATATCTGCTTCCCTATATGGA 58.736 40.000 3.98 0.00 38.35 3.41
2351 3625 5.954153 ATCTGCTTCCCTATATGGATCTG 57.046 43.478 0.00 0.00 38.35 2.90
2362 3636 7.124901 TCCCTATATGGATCTGAGAACTAATGC 59.875 40.741 0.00 0.00 38.35 3.56
2369 3643 4.842531 TCTGAGAACTAATGCCATGGAA 57.157 40.909 18.40 4.87 0.00 3.53
2376 3650 5.716228 AGAACTAATGCCATGGAAAATGTGA 59.284 36.000 18.40 0.00 0.00 3.58
2377 3651 5.587388 ACTAATGCCATGGAAAATGTGAG 57.413 39.130 18.40 0.00 0.00 3.51
2395 3669 6.304356 TGTGAGCAGTAAAATCTTGTCAAG 57.696 37.500 6.21 6.21 0.00 3.02
2422 3696 9.623000 TGAAGGCATTATATATGGATCTGAATG 57.377 33.333 0.00 0.00 0.00 2.67
2445 3719 7.744087 TGTATGTGTAACTTTGCAGATTCTT 57.256 32.000 0.00 0.00 38.04 2.52
2448 3722 4.337836 TGTGTAACTTTGCAGATTCTTGCA 59.662 37.500 6.68 6.68 45.13 4.08
2559 3833 2.158623 AGCAGTCAACATTGTCTTGGGA 60.159 45.455 0.00 0.00 0.00 4.37
2577 3851 1.168714 GAATCAAAGTTGGAGGCGCT 58.831 50.000 7.64 0.00 0.00 5.92
2584 3858 2.038837 GTTGGAGGCGCTGGTAACC 61.039 63.158 7.64 2.82 0.00 2.85
2586 3860 4.484872 GGAGGCGCTGGTAACCCC 62.485 72.222 7.64 0.00 0.00 4.95
2604 3878 0.322975 CCTGGAAGATCGGCTATGGG 59.677 60.000 0.00 0.00 34.07 4.00
2607 3881 1.843851 TGGAAGATCGGCTATGGGTTT 59.156 47.619 0.00 0.00 0.00 3.27
2609 3883 3.071023 TGGAAGATCGGCTATGGGTTTAG 59.929 47.826 0.00 0.00 0.00 1.85
2625 3899 0.548031 TTAGCCTGGCCATCCTTCTG 59.452 55.000 16.57 0.00 0.00 3.02
2652 3926 3.434167 CCATTATCACCCTGGAAGTCCTG 60.434 52.174 0.00 0.00 36.82 3.86
2683 3957 1.269051 GGAGGAAAAACAACAGCGGTG 60.269 52.381 14.13 14.13 0.00 4.94
2699 3973 1.594397 CGGTGCTACGACGACATACTA 59.406 52.381 0.00 0.00 35.47 1.82
2764 4038 7.489160 AGGCCCTATTATTTTCATTCGTTTTC 58.511 34.615 0.00 0.00 0.00 2.29
2765 4039 7.342026 AGGCCCTATTATTTTCATTCGTTTTCT 59.658 33.333 0.00 0.00 0.00 2.52
2766 4040 7.979537 GGCCCTATTATTTTCATTCGTTTTCTT 59.020 33.333 0.00 0.00 0.00 2.52
2937 5752 3.669824 GCGTGACGAAGAGTGAATAGTGA 60.670 47.826 10.10 0.00 0.00 3.41
2982 5797 1.427819 GGCATGTTTCGCGTTAGGG 59.572 57.895 5.77 0.00 0.00 3.53
2998 5813 0.613572 AGGGGTGGGCATTAAAACCG 60.614 55.000 0.00 0.00 33.24 4.44
3001 5816 1.249407 GGTGGGCATTAAAACCGACA 58.751 50.000 12.32 0.00 36.47 4.35
3009 5824 5.044558 GGCATTAAAACCGACAAACTGAAA 58.955 37.500 0.00 0.00 0.00 2.69
3025 5840 2.546368 CTGAAAACCGAACCGACATTGA 59.454 45.455 0.00 0.00 0.00 2.57
3030 5845 1.231221 CCGAACCGACATTGAAACCA 58.769 50.000 0.00 0.00 0.00 3.67
3092 5914 4.499037 ACAGTTTTAATTCCGCCAGTTC 57.501 40.909 0.00 0.00 0.00 3.01
3105 5927 1.333791 GCCAGTTCGGTTTTTCTCACG 60.334 52.381 0.00 0.00 36.97 4.35
3106 5928 1.333791 CCAGTTCGGTTTTTCTCACGC 60.334 52.381 0.00 0.00 0.00 5.34
3115 5937 4.490890 CGGTTTTTCTCACGCGATTTTATC 59.509 41.667 15.93 0.00 0.00 1.75
3120 5942 1.190323 CTCACGCGATTTTATCTCCGC 59.810 52.381 15.93 0.00 43.68 5.54
3123 5945 0.878523 CGCGATTTTATCTCCGCCCA 60.879 55.000 0.00 0.00 44.18 5.36
3186 6039 2.593346 AGCTAGCAAGGTGAGATTCG 57.407 50.000 18.83 0.00 30.51 3.34
3187 6040 1.137872 AGCTAGCAAGGTGAGATTCGG 59.862 52.381 18.83 0.00 30.51 4.30
3197 6050 3.009033 AGGTGAGATTCGGAAATCCAACA 59.991 43.478 0.00 0.00 41.97 3.33
3203 6056 2.418368 TCGGAAATCCAACATCCAGG 57.582 50.000 0.00 0.00 35.14 4.45
3207 6060 3.119495 CGGAAATCCAACATCCAGGTTTC 60.119 47.826 0.00 0.00 35.14 2.78
3219 6072 2.854253 AGGTTTCTCTCCACCTGCA 58.146 52.632 0.00 0.00 42.20 4.41
3235 6089 3.010138 ACCTGCAGTACCAACCATAACAT 59.990 43.478 13.81 0.00 0.00 2.71
3246 6100 2.846193 ACCATAACATATCGCACACCC 58.154 47.619 0.00 0.00 0.00 4.61
3349 6344 2.438021 GCTGGTTTTTCCTTTTTCCCCT 59.562 45.455 0.00 0.00 37.07 4.79
3354 6349 7.029053 TGGTTTTTCCTTTTTCCCCTTTTTA 57.971 32.000 0.00 0.00 37.07 1.52
3464 6480 5.173774 TGAACTTCTTTCAAGTGCATGAC 57.826 39.130 0.00 0.00 41.51 3.06
3491 6507 6.983906 ATTTCAGATCCACAAACTTTTCCT 57.016 33.333 0.00 0.00 0.00 3.36
3492 6508 6.790232 TTTCAGATCCACAAACTTTTCCTT 57.210 33.333 0.00 0.00 0.00 3.36
3494 6510 5.445069 TCAGATCCACAAACTTTTCCTTGA 58.555 37.500 0.00 0.00 0.00 3.02
3542 6558 5.551233 ACTCCTTCTCAAATTCGTGAATGA 58.449 37.500 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 3.854669 AAGGCGAGGCGAGGATGG 61.855 66.667 0.00 0.00 0.00 3.51
7 8 2.587194 CAAGGCGAGGCGAGGATG 60.587 66.667 0.00 0.00 0.00 3.51
8 9 4.537433 GCAAGGCGAGGCGAGGAT 62.537 66.667 0.00 0.00 0.00 3.24
46 47 4.465512 GGATGCGGCGCACACAAG 62.466 66.667 38.84 0.00 43.04 3.16
69 70 4.874977 GTACGGGCAGAGGCGAGC 62.875 72.222 0.00 0.00 42.47 5.03
70 71 4.208686 GGTACGGGCAGAGGCGAG 62.209 72.222 0.00 0.00 42.47 5.03
72 73 4.814294 GTGGTACGGGCAGAGGCG 62.814 72.222 0.00 0.00 42.47 5.52
73 74 4.814294 CGTGGTACGGGCAGAGGC 62.814 72.222 0.00 0.00 38.08 4.70
74 75 4.814294 GCGTGGTACGGGCAGAGG 62.814 72.222 3.41 0.00 42.82 3.69
75 76 3.701604 GAGCGTGGTACGGGCAGAG 62.702 68.421 3.41 0.00 42.82 3.35
76 77 3.755628 GAGCGTGGTACGGGCAGA 61.756 66.667 3.41 0.00 42.82 4.26
79 80 4.729856 AACGAGCGTGGTACGGGC 62.730 66.667 3.41 0.00 42.82 6.13
80 81 2.807895 CAACGAGCGTGGTACGGG 60.808 66.667 3.41 0.00 42.82 5.28
81 82 2.807895 CCAACGAGCGTGGTACGG 60.808 66.667 3.41 0.00 42.82 4.02
82 83 3.475774 GCCAACGAGCGTGGTACG 61.476 66.667 0.00 0.00 45.88 3.67
124 125 4.459089 GACCACCTCCTGCTCGCC 62.459 72.222 0.00 0.00 0.00 5.54
125 126 2.731691 TTTGACCACCTCCTGCTCGC 62.732 60.000 0.00 0.00 0.00 5.03
126 127 0.951040 GTTTGACCACCTCCTGCTCG 60.951 60.000 0.00 0.00 0.00 5.03
127 128 0.951040 CGTTTGACCACCTCCTGCTC 60.951 60.000 0.00 0.00 0.00 4.26
128 129 1.071471 CGTTTGACCACCTCCTGCT 59.929 57.895 0.00 0.00 0.00 4.24
129 130 1.966451 CCGTTTGACCACCTCCTGC 60.966 63.158 0.00 0.00 0.00 4.85
130 131 1.302511 CCCGTTTGACCACCTCCTG 60.303 63.158 0.00 0.00 0.00 3.86
131 132 3.157680 CCCGTTTGACCACCTCCT 58.842 61.111 0.00 0.00 0.00 3.69
132 133 2.671963 GCCCGTTTGACCACCTCC 60.672 66.667 0.00 0.00 0.00 4.30
133 134 2.671963 GGCCCGTTTGACCACCTC 60.672 66.667 0.00 0.00 0.00 3.85
134 135 4.636435 CGGCCCGTTTGACCACCT 62.636 66.667 0.00 0.00 0.00 4.00
136 137 4.941309 ACCGGCCCGTTTGACCAC 62.941 66.667 0.00 0.00 0.00 4.16
137 138 4.939368 CACCGGCCCGTTTGACCA 62.939 66.667 0.00 0.00 0.00 4.02
159 160 4.827087 AGGCGCACTGCTCCGATG 62.827 66.667 10.83 0.00 45.43 3.84
160 161 4.827087 CAGGCGCACTGCTCCGAT 62.827 66.667 10.83 0.00 45.43 4.18
174 175 2.336088 CAAACGCCAAGGTGCAGG 59.664 61.111 0.00 0.00 0.00 4.85
175 176 2.355009 GCAAACGCCAAGGTGCAG 60.355 61.111 0.00 0.00 35.74 4.41
176 177 3.143515 TGCAAACGCCAAGGTGCA 61.144 55.556 0.00 0.00 40.95 4.57
177 178 2.658268 GTGCAAACGCCAAGGTGC 60.658 61.111 0.00 0.00 36.08 5.01
178 179 1.299316 CTGTGCAAACGCCAAGGTG 60.299 57.895 0.00 0.00 0.00 4.00
179 180 1.447317 CTCTGTGCAAACGCCAAGGT 61.447 55.000 0.00 0.00 0.00 3.50
180 181 1.283793 CTCTGTGCAAACGCCAAGG 59.716 57.895 0.00 0.00 0.00 3.61
181 182 1.165907 TCCTCTGTGCAAACGCCAAG 61.166 55.000 0.00 0.00 0.00 3.61
182 183 1.153066 TCCTCTGTGCAAACGCCAA 60.153 52.632 0.00 0.00 0.00 4.52
183 184 1.597854 CTCCTCTGTGCAAACGCCA 60.598 57.895 0.00 0.00 0.00 5.69
184 185 1.294659 CTCTCCTCTGTGCAAACGCC 61.295 60.000 0.00 0.00 0.00 5.68
185 186 0.319900 TCTCTCCTCTGTGCAAACGC 60.320 55.000 0.00 0.00 0.00 4.84
186 187 1.998315 CATCTCTCCTCTGTGCAAACG 59.002 52.381 0.00 0.00 0.00 3.60
187 188 2.740981 CACATCTCTCCTCTGTGCAAAC 59.259 50.000 0.00 0.00 34.47 2.93
188 189 2.289882 CCACATCTCTCCTCTGTGCAAA 60.290 50.000 0.00 0.00 39.11 3.68
189 190 1.277273 CCACATCTCTCCTCTGTGCAA 59.723 52.381 0.00 0.00 39.11 4.08
190 191 0.900421 CCACATCTCTCCTCTGTGCA 59.100 55.000 0.00 0.00 39.11 4.57
191 192 0.177604 CCCACATCTCTCCTCTGTGC 59.822 60.000 0.00 0.00 39.11 4.57
192 193 0.829333 CCCCACATCTCTCCTCTGTG 59.171 60.000 0.00 0.00 39.93 3.66
193 194 0.415429 ACCCCACATCTCTCCTCTGT 59.585 55.000 0.00 0.00 0.00 3.41
194 195 0.829333 CACCCCACATCTCTCCTCTG 59.171 60.000 0.00 0.00 0.00 3.35
195 196 0.326048 CCACCCCACATCTCTCCTCT 60.326 60.000 0.00 0.00 0.00 3.69
196 197 1.341156 CCCACCCCACATCTCTCCTC 61.341 65.000 0.00 0.00 0.00 3.71
197 198 1.307343 CCCACCCCACATCTCTCCT 60.307 63.158 0.00 0.00 0.00 3.69
198 199 2.378634 CCCCACCCCACATCTCTCC 61.379 68.421 0.00 0.00 0.00 3.71
199 200 1.616628 ACCCCACCCCACATCTCTC 60.617 63.158 0.00 0.00 0.00 3.20
200 201 1.925455 CACCCCACCCCACATCTCT 60.925 63.158 0.00 0.00 0.00 3.10
201 202 2.677228 CACCCCACCCCACATCTC 59.323 66.667 0.00 0.00 0.00 2.75
202 203 2.941025 CCACCCCACCCCACATCT 60.941 66.667 0.00 0.00 0.00 2.90
203 204 4.060667 CCCACCCCACCCCACATC 62.061 72.222 0.00 0.00 0.00 3.06
211 212 1.990160 TATTCGATGGCCCACCCCAC 61.990 60.000 0.00 0.00 37.79 4.61
212 213 1.282653 TTATTCGATGGCCCACCCCA 61.283 55.000 0.00 0.00 39.65 4.96
213 214 0.106419 TTTATTCGATGGCCCACCCC 60.106 55.000 0.00 0.00 33.59 4.95
214 215 1.770294 TTTTATTCGATGGCCCACCC 58.230 50.000 0.00 0.00 33.59 4.61
215 216 4.558697 GCTTATTTTATTCGATGGCCCACC 60.559 45.833 0.00 0.00 0.00 4.61
216 217 4.037446 TGCTTATTTTATTCGATGGCCCAC 59.963 41.667 0.00 0.00 0.00 4.61
217 218 4.211125 TGCTTATTTTATTCGATGGCCCA 58.789 39.130 0.00 0.00 0.00 5.36
218 219 4.518970 TCTGCTTATTTTATTCGATGGCCC 59.481 41.667 0.00 0.00 0.00 5.80
219 220 5.335191 CCTCTGCTTATTTTATTCGATGGCC 60.335 44.000 0.00 0.00 0.00 5.36
220 221 5.470098 TCCTCTGCTTATTTTATTCGATGGC 59.530 40.000 0.00 0.00 0.00 4.40
221 222 7.355778 GTTCCTCTGCTTATTTTATTCGATGG 58.644 38.462 0.00 0.00 0.00 3.51
222 223 7.065894 CGTTCCTCTGCTTATTTTATTCGATG 58.934 38.462 0.00 0.00 0.00 3.84
223 224 6.761714 ACGTTCCTCTGCTTATTTTATTCGAT 59.238 34.615 0.00 0.00 0.00 3.59
224 225 6.035650 CACGTTCCTCTGCTTATTTTATTCGA 59.964 38.462 0.00 0.00 0.00 3.71
225 226 6.185399 CACGTTCCTCTGCTTATTTTATTCG 58.815 40.000 0.00 0.00 0.00 3.34
226 227 6.458342 CCCACGTTCCTCTGCTTATTTTATTC 60.458 42.308 0.00 0.00 0.00 1.75
227 228 5.357032 CCCACGTTCCTCTGCTTATTTTATT 59.643 40.000 0.00 0.00 0.00 1.40
228 229 4.881850 CCCACGTTCCTCTGCTTATTTTAT 59.118 41.667 0.00 0.00 0.00 1.40
229 230 4.258543 CCCACGTTCCTCTGCTTATTTTA 58.741 43.478 0.00 0.00 0.00 1.52
230 231 3.081804 CCCACGTTCCTCTGCTTATTTT 58.918 45.455 0.00 0.00 0.00 1.82
231 232 2.039879 ACCCACGTTCCTCTGCTTATTT 59.960 45.455 0.00 0.00 0.00 1.40
232 233 1.628846 ACCCACGTTCCTCTGCTTATT 59.371 47.619 0.00 0.00 0.00 1.40
233 234 1.066143 CACCCACGTTCCTCTGCTTAT 60.066 52.381 0.00 0.00 0.00 1.73
234 235 0.320374 CACCCACGTTCCTCTGCTTA 59.680 55.000 0.00 0.00 0.00 3.09
235 236 1.071471 CACCCACGTTCCTCTGCTT 59.929 57.895 0.00 0.00 0.00 3.91
236 237 2.743718 CACCCACGTTCCTCTGCT 59.256 61.111 0.00 0.00 0.00 4.24
237 238 2.358737 CCACCCACGTTCCTCTGC 60.359 66.667 0.00 0.00 0.00 4.26
238 239 2.347490 CCCACCCACGTTCCTCTG 59.653 66.667 0.00 0.00 0.00 3.35
239 240 2.122547 ACCCACCCACGTTCCTCT 60.123 61.111 0.00 0.00 0.00 3.69
240 241 2.032071 CACCCACCCACGTTCCTC 59.968 66.667 0.00 0.00 0.00 3.71
241 242 2.446994 TCACCCACCCACGTTCCT 60.447 61.111 0.00 0.00 0.00 3.36
242 243 2.032071 CTCACCCACCCACGTTCC 59.968 66.667 0.00 0.00 0.00 3.62
243 244 1.597027 CACTCACCCACCCACGTTC 60.597 63.158 0.00 0.00 0.00 3.95
244 245 2.067605 TCACTCACCCACCCACGTT 61.068 57.895 0.00 0.00 0.00 3.99
245 246 2.445085 TCACTCACCCACCCACGT 60.445 61.111 0.00 0.00 0.00 4.49
246 247 2.030562 GTCACTCACCCACCCACG 59.969 66.667 0.00 0.00 0.00 4.94
247 248 1.071471 CTGTCACTCACCCACCCAC 59.929 63.158 0.00 0.00 0.00 4.61
248 249 2.146724 CCTGTCACTCACCCACCCA 61.147 63.158 0.00 0.00 0.00 4.51
249 250 2.147387 ACCTGTCACTCACCCACCC 61.147 63.158 0.00 0.00 0.00 4.61
250 251 1.071471 CACCTGTCACTCACCCACC 59.929 63.158 0.00 0.00 0.00 4.61
251 252 1.071471 CCACCTGTCACTCACCCAC 59.929 63.158 0.00 0.00 0.00 4.61
252 253 2.146724 CCCACCTGTCACTCACCCA 61.147 63.158 0.00 0.00 0.00 4.51
253 254 2.750350 CCCACCTGTCACTCACCC 59.250 66.667 0.00 0.00 0.00 4.61
254 255 2.750350 CCCCACCTGTCACTCACC 59.250 66.667 0.00 0.00 0.00 4.02
255 256 2.032681 GCCCCACCTGTCACTCAC 59.967 66.667 0.00 0.00 0.00 3.51
256 257 2.447572 TGCCCCACCTGTCACTCA 60.448 61.111 0.00 0.00 0.00 3.41
257 258 2.348998 CTGCCCCACCTGTCACTC 59.651 66.667 0.00 0.00 0.00 3.51
258 259 3.252284 CCTGCCCCACCTGTCACT 61.252 66.667 0.00 0.00 0.00 3.41
266 267 4.284550 TGTTCAGGCCTGCCCCAC 62.285 66.667 28.91 20.08 36.58 4.61
267 268 4.284550 GTGTTCAGGCCTGCCCCA 62.285 66.667 28.91 19.75 36.58 4.96
268 269 4.284550 TGTGTTCAGGCCTGCCCC 62.285 66.667 28.91 17.38 36.58 5.80
269 270 2.674380 CTGTGTTCAGGCCTGCCC 60.674 66.667 28.91 19.91 37.97 5.36
277 278 1.734477 CTCGTCCGCCTGTGTTCAG 60.734 63.158 0.00 0.00 41.01 3.02
278 279 2.338620 CTCGTCCGCCTGTGTTCA 59.661 61.111 0.00 0.00 0.00 3.18
279 280 2.432628 CCTCGTCCGCCTGTGTTC 60.433 66.667 0.00 0.00 0.00 3.18
280 281 4.681978 GCCTCGTCCGCCTGTGTT 62.682 66.667 0.00 0.00 0.00 3.32
289 290 2.765250 TTTCTGCACTCGCCTCGTCC 62.765 60.000 0.00 0.00 37.32 4.79
290 291 0.944311 TTTTCTGCACTCGCCTCGTC 60.944 55.000 0.00 0.00 37.32 4.20
291 292 1.069090 TTTTCTGCACTCGCCTCGT 59.931 52.632 0.00 0.00 37.32 4.18
292 293 1.493311 GTTTTCTGCACTCGCCTCG 59.507 57.895 0.00 0.00 37.32 4.63
293 294 1.222115 ACGTTTTCTGCACTCGCCTC 61.222 55.000 0.00 0.00 37.32 4.70
294 295 1.222115 GACGTTTTCTGCACTCGCCT 61.222 55.000 0.00 0.00 37.32 5.52
295 296 1.204312 GACGTTTTCTGCACTCGCC 59.796 57.895 0.00 0.00 37.32 5.54
296 297 0.111089 CTGACGTTTTCTGCACTCGC 60.111 55.000 0.00 0.00 39.24 5.03
297 298 0.111089 GCTGACGTTTTCTGCACTCG 60.111 55.000 0.00 0.00 46.01 4.18
298 299 3.736581 GCTGACGTTTTCTGCACTC 57.263 52.632 0.00 0.00 46.01 3.51
302 303 2.111756 CACAAAGCTGACGTTTTCTGC 58.888 47.619 0.00 0.00 46.86 4.26
303 304 3.354397 GACACAAAGCTGACGTTTTCTG 58.646 45.455 0.00 0.00 0.00 3.02
304 305 2.354821 GGACACAAAGCTGACGTTTTCT 59.645 45.455 0.00 0.00 0.00 2.52
305 306 2.716398 GGACACAAAGCTGACGTTTTC 58.284 47.619 0.00 0.00 0.00 2.29
306 307 1.063469 CGGACACAAAGCTGACGTTTT 59.937 47.619 0.00 0.00 0.00 2.43
307 308 0.655733 CGGACACAAAGCTGACGTTT 59.344 50.000 0.00 0.00 0.00 3.60
308 309 1.772063 GCGGACACAAAGCTGACGTT 61.772 55.000 0.00 0.00 0.00 3.99
309 310 2.244651 GCGGACACAAAGCTGACGT 61.245 57.895 0.00 0.00 0.00 4.34
310 311 2.551270 GCGGACACAAAGCTGACG 59.449 61.111 0.00 0.00 0.00 4.35
311 312 2.946762 GGCGGACACAAAGCTGAC 59.053 61.111 0.00 0.00 0.00 3.51
312 313 2.664851 CGGCGGACACAAAGCTGA 60.665 61.111 0.00 0.00 39.46 4.26
313 314 2.954753 GACGGCGGACACAAAGCTG 61.955 63.158 13.24 0.00 42.53 4.24
314 315 2.665185 GACGGCGGACACAAAGCT 60.665 61.111 13.24 0.00 0.00 3.74
315 316 4.072088 CGACGGCGGACACAAAGC 62.072 66.667 13.24 0.00 0.00 3.51
316 317 2.355363 TCGACGGCGGACACAAAG 60.355 61.111 12.58 0.00 38.28 2.77
317 318 2.659244 GTCGACGGCGGACACAAA 60.659 61.111 12.58 0.00 38.28 2.83
318 319 4.651008 GGTCGACGGCGGACACAA 62.651 66.667 12.58 0.00 38.28 3.33
322 323 3.945304 ATTTGGGTCGACGGCGGAC 62.945 63.158 12.58 7.88 38.28 4.79
323 324 3.697747 ATTTGGGTCGACGGCGGA 61.698 61.111 12.58 0.00 38.28 5.54
324 325 3.496131 CATTTGGGTCGACGGCGG 61.496 66.667 12.58 0.00 38.28 6.13
325 326 2.740826 ACATTTGGGTCGACGGCG 60.741 61.111 2.87 2.87 39.35 6.46
326 327 2.686816 CCACATTTGGGTCGACGGC 61.687 63.158 9.92 0.00 39.57 5.68
327 328 0.887387 AACCACATTTGGGTCGACGG 60.887 55.000 9.92 4.88 39.38 4.79
328 329 2.624169 AACCACATTTGGGTCGACG 58.376 52.632 9.92 0.00 39.38 5.12
340 341 9.618890 TCATTTCCATTTTAAATTTGAACCACA 57.381 25.926 0.00 0.00 0.00 4.17
346 347 9.160496 CCGGATTCATTTCCATTTTAAATTTGA 57.840 29.630 0.00 0.00 35.34 2.69
347 348 9.160496 TCCGGATTCATTTCCATTTTAAATTTG 57.840 29.630 0.00 0.00 35.34 2.32
348 349 9.161629 GTCCGGATTCATTTCCATTTTAAATTT 57.838 29.630 7.81 0.00 35.34 1.82
349 350 8.317679 TGTCCGGATTCATTTCCATTTTAAATT 58.682 29.630 7.81 0.00 35.34 1.82
350 351 7.763985 GTGTCCGGATTCATTTCCATTTTAAAT 59.236 33.333 7.81 0.00 35.34 1.40
351 352 7.093992 GTGTCCGGATTCATTTCCATTTTAAA 58.906 34.615 7.81 0.00 35.34 1.52
352 353 6.209589 TGTGTCCGGATTCATTTCCATTTTAA 59.790 34.615 7.81 0.00 35.34 1.52
353 354 5.712446 TGTGTCCGGATTCATTTCCATTTTA 59.288 36.000 7.81 0.00 35.34 1.52
354 355 4.526262 TGTGTCCGGATTCATTTCCATTTT 59.474 37.500 7.81 0.00 35.34 1.82
355 356 4.085733 TGTGTCCGGATTCATTTCCATTT 58.914 39.130 7.81 0.00 35.34 2.32
356 357 3.696045 TGTGTCCGGATTCATTTCCATT 58.304 40.909 7.81 0.00 35.34 3.16
357 358 3.364460 TGTGTCCGGATTCATTTCCAT 57.636 42.857 7.81 0.00 35.34 3.41
358 359 2.869101 TGTGTCCGGATTCATTTCCA 57.131 45.000 7.81 0.00 35.34 3.53
359 360 4.513198 TTTTGTGTCCGGATTCATTTCC 57.487 40.909 7.81 0.00 0.00 3.13
360 361 6.967199 GTCTATTTTGTGTCCGGATTCATTTC 59.033 38.462 7.81 0.00 0.00 2.17
361 362 6.432783 TGTCTATTTTGTGTCCGGATTCATTT 59.567 34.615 7.81 1.34 0.00 2.32
362 363 5.943416 TGTCTATTTTGTGTCCGGATTCATT 59.057 36.000 7.81 1.68 0.00 2.57
363 364 5.496556 TGTCTATTTTGTGTCCGGATTCAT 58.503 37.500 7.81 0.00 0.00 2.57
364 365 4.900684 TGTCTATTTTGTGTCCGGATTCA 58.099 39.130 7.81 7.50 0.00 2.57
365 366 5.584649 TCATGTCTATTTTGTGTCCGGATTC 59.415 40.000 7.81 4.48 0.00 2.52
366 367 5.496556 TCATGTCTATTTTGTGTCCGGATT 58.503 37.500 7.81 0.00 0.00 3.01
367 368 5.097742 TCATGTCTATTTTGTGTCCGGAT 57.902 39.130 7.81 0.00 0.00 4.18
368 369 4.545208 TCATGTCTATTTTGTGTCCGGA 57.455 40.909 0.00 0.00 0.00 5.14
369 370 5.390613 GTTTCATGTCTATTTTGTGTCCGG 58.609 41.667 0.00 0.00 0.00 5.14
370 371 5.079406 CGTTTCATGTCTATTTTGTGTCCG 58.921 41.667 0.00 0.00 0.00 4.79
371 372 6.236017 TCGTTTCATGTCTATTTTGTGTCC 57.764 37.500 0.00 0.00 0.00 4.02
372 373 8.555166 TTTTCGTTTCATGTCTATTTTGTGTC 57.445 30.769 0.00 0.00 0.00 3.67
373 374 8.967218 CATTTTCGTTTCATGTCTATTTTGTGT 58.033 29.630 0.00 0.00 0.00 3.72
374 375 9.179552 TCATTTTCGTTTCATGTCTATTTTGTG 57.820 29.630 0.00 0.00 0.00 3.33
375 376 9.743057 TTCATTTTCGTTTCATGTCTATTTTGT 57.257 25.926 0.00 0.00 0.00 2.83
379 380 9.778993 CAGATTCATTTTCGTTTCATGTCTATT 57.221 29.630 0.00 0.00 0.00 1.73
380 381 7.912250 GCAGATTCATTTTCGTTTCATGTCTAT 59.088 33.333 0.00 0.00 0.00 1.98
381 382 7.243487 GCAGATTCATTTTCGTTTCATGTCTA 58.757 34.615 0.00 0.00 0.00 2.59
382 383 6.088824 GCAGATTCATTTTCGTTTCATGTCT 58.911 36.000 0.00 0.00 0.00 3.41
383 384 5.002840 CGCAGATTCATTTTCGTTTCATGTC 59.997 40.000 0.00 0.00 0.00 3.06
384 385 4.853196 CGCAGATTCATTTTCGTTTCATGT 59.147 37.500 0.00 0.00 0.00 3.21
385 386 4.259135 GCGCAGATTCATTTTCGTTTCATG 60.259 41.667 0.30 0.00 0.00 3.07
386 387 3.853671 GCGCAGATTCATTTTCGTTTCAT 59.146 39.130 0.30 0.00 0.00 2.57
387 388 3.058293 AGCGCAGATTCATTTTCGTTTCA 60.058 39.130 11.47 0.00 0.00 2.69
388 389 3.492313 AGCGCAGATTCATTTTCGTTTC 58.508 40.909 11.47 0.00 0.00 2.78
389 390 3.559238 AGCGCAGATTCATTTTCGTTT 57.441 38.095 11.47 0.00 0.00 3.60
390 391 3.236816 CAAGCGCAGATTCATTTTCGTT 58.763 40.909 11.47 0.00 27.80 3.85
391 392 2.414559 CCAAGCGCAGATTCATTTTCGT 60.415 45.455 11.47 0.00 27.80 3.85
392 393 2.179589 CCAAGCGCAGATTCATTTTCG 58.820 47.619 11.47 0.00 27.80 3.46
393 394 2.094545 ACCCAAGCGCAGATTCATTTTC 60.095 45.455 11.47 0.00 27.80 2.29
394 395 1.895131 ACCCAAGCGCAGATTCATTTT 59.105 42.857 11.47 0.00 27.80 1.82
395 396 1.474077 GACCCAAGCGCAGATTCATTT 59.526 47.619 11.47 0.00 27.80 2.32
396 397 1.098050 GACCCAAGCGCAGATTCATT 58.902 50.000 11.47 0.00 27.80 2.57
397 398 1.091771 CGACCCAAGCGCAGATTCAT 61.092 55.000 11.47 0.00 27.80 2.57
398 399 1.741401 CGACCCAAGCGCAGATTCA 60.741 57.895 11.47 0.00 27.80 2.57
399 400 0.811616 ATCGACCCAAGCGCAGATTC 60.812 55.000 11.47 0.00 27.80 2.52
400 401 1.091771 CATCGACCCAAGCGCAGATT 61.092 55.000 11.47 0.00 35.16 2.40
401 402 1.522355 CATCGACCCAAGCGCAGAT 60.522 57.895 11.47 0.00 0.00 2.90
402 403 2.125552 CATCGACCCAAGCGCAGA 60.126 61.111 11.47 0.00 0.00 4.26
403 404 1.577328 AAACATCGACCCAAGCGCAG 61.577 55.000 11.47 0.38 0.00 5.18
404 405 1.169661 AAAACATCGACCCAAGCGCA 61.170 50.000 11.47 0.00 0.00 6.09
405 406 0.039527 AAAAACATCGACCCAAGCGC 60.040 50.000 0.00 0.00 0.00 5.92
406 407 3.757745 ATAAAAACATCGACCCAAGCG 57.242 42.857 0.00 0.00 0.00 4.68
407 408 4.857037 GTGAATAAAAACATCGACCCAAGC 59.143 41.667 0.00 0.00 0.00 4.01
408 409 5.856455 GTGTGAATAAAAACATCGACCCAAG 59.144 40.000 0.00 0.00 0.00 3.61
409 410 5.533154 AGTGTGAATAAAAACATCGACCCAA 59.467 36.000 0.00 0.00 0.00 4.12
410 411 5.049060 CAGTGTGAATAAAAACATCGACCCA 60.049 40.000 0.00 0.00 0.00 4.51
411 412 5.180492 TCAGTGTGAATAAAAACATCGACCC 59.820 40.000 0.00 0.00 0.00 4.46
412 413 6.077838 GTCAGTGTGAATAAAAACATCGACC 58.922 40.000 0.00 0.00 30.28 4.79
413 414 6.077838 GGTCAGTGTGAATAAAAACATCGAC 58.922 40.000 0.00 0.00 33.21 4.20
414 415 5.180492 GGGTCAGTGTGAATAAAAACATCGA 59.820 40.000 0.00 0.00 0.00 3.59
415 416 5.049060 TGGGTCAGTGTGAATAAAAACATCG 60.049 40.000 0.00 0.00 0.00 3.84
416 417 6.325919 TGGGTCAGTGTGAATAAAAACATC 57.674 37.500 0.00 0.00 0.00 3.06
417 418 6.723298 TTGGGTCAGTGTGAATAAAAACAT 57.277 33.333 0.00 0.00 0.00 2.71
418 419 6.071334 TGTTTGGGTCAGTGTGAATAAAAACA 60.071 34.615 0.00 0.00 31.41 2.83
419 420 6.334202 TGTTTGGGTCAGTGTGAATAAAAAC 58.666 36.000 0.00 0.00 0.00 2.43
420 421 6.531503 TGTTTGGGTCAGTGTGAATAAAAA 57.468 33.333 0.00 0.00 0.00 1.94
421 422 6.531503 TTGTTTGGGTCAGTGTGAATAAAA 57.468 33.333 0.00 0.00 0.00 1.52
422 423 6.334202 GTTTGTTTGGGTCAGTGTGAATAAA 58.666 36.000 0.00 0.00 0.00 1.40
423 424 5.449314 CGTTTGTTTGGGTCAGTGTGAATAA 60.449 40.000 0.00 0.00 0.00 1.40
424 425 4.035792 CGTTTGTTTGGGTCAGTGTGAATA 59.964 41.667 0.00 0.00 0.00 1.75
425 426 3.181491 CGTTTGTTTGGGTCAGTGTGAAT 60.181 43.478 0.00 0.00 0.00 2.57
426 427 2.162608 CGTTTGTTTGGGTCAGTGTGAA 59.837 45.455 0.00 0.00 0.00 3.18
427 428 1.740585 CGTTTGTTTGGGTCAGTGTGA 59.259 47.619 0.00 0.00 0.00 3.58
428 429 1.202245 CCGTTTGTTTGGGTCAGTGTG 60.202 52.381 0.00 0.00 0.00 3.82
429 430 1.099689 CCGTTTGTTTGGGTCAGTGT 58.900 50.000 0.00 0.00 0.00 3.55
430 431 0.248866 GCCGTTTGTTTGGGTCAGTG 60.249 55.000 0.00 0.00 0.00 3.66
431 432 1.720694 CGCCGTTTGTTTGGGTCAGT 61.721 55.000 0.00 0.00 0.00 3.41
432 433 1.008995 CGCCGTTTGTTTGGGTCAG 60.009 57.895 0.00 0.00 0.00 3.51
433 434 2.482333 CCGCCGTTTGTTTGGGTCA 61.482 57.895 0.00 0.00 0.00 4.02
434 435 2.333581 CCGCCGTTTGTTTGGGTC 59.666 61.111 0.00 0.00 0.00 4.46
435 436 3.906879 GCCGCCGTTTGTTTGGGT 61.907 61.111 0.00 0.00 0.00 4.51
436 437 3.839642 CTGCCGCCGTTTGTTTGGG 62.840 63.158 0.00 0.00 0.00 4.12
437 438 2.354539 CTGCCGCCGTTTGTTTGG 60.355 61.111 0.00 0.00 0.00 3.28
438 439 1.657181 GTCTGCCGCCGTTTGTTTG 60.657 57.895 0.00 0.00 0.00 2.93
439 440 2.719354 GTCTGCCGCCGTTTGTTT 59.281 55.556 0.00 0.00 0.00 2.83
440 441 3.645975 CGTCTGCCGCCGTTTGTT 61.646 61.111 0.00 0.00 0.00 2.83
441 442 4.595538 TCGTCTGCCGCCGTTTGT 62.596 61.111 0.00 0.00 36.19 2.83
442 443 2.182614 ATTTCGTCTGCCGCCGTTTG 62.183 55.000 0.00 0.00 36.19 2.93
443 444 1.964373 ATTTCGTCTGCCGCCGTTT 60.964 52.632 0.00 0.00 36.19 3.60
444 445 2.358247 ATTTCGTCTGCCGCCGTT 60.358 55.556 0.00 0.00 36.19 4.44
445 446 3.118454 CATTTCGTCTGCCGCCGT 61.118 61.111 0.00 0.00 36.19 5.68
446 447 3.864686 CCATTTCGTCTGCCGCCG 61.865 66.667 0.00 0.00 36.19 6.46
447 448 3.508840 CCCATTTCGTCTGCCGCC 61.509 66.667 0.00 0.00 36.19 6.13
448 449 4.179579 GCCCATTTCGTCTGCCGC 62.180 66.667 0.00 0.00 36.19 6.53
449 450 2.745884 TGCCCATTTCGTCTGCCG 60.746 61.111 0.00 0.00 38.13 5.69
450 451 0.392461 TAGTGCCCATTTCGTCTGCC 60.392 55.000 0.00 0.00 0.00 4.85
451 452 0.727398 GTAGTGCCCATTTCGTCTGC 59.273 55.000 0.00 0.00 0.00 4.26
452 453 1.369625 GGTAGTGCCCATTTCGTCTG 58.630 55.000 0.00 0.00 0.00 3.51
453 454 0.108329 CGGTAGTGCCCATTTCGTCT 60.108 55.000 0.00 0.00 0.00 4.18
454 455 0.390735 ACGGTAGTGCCCATTTCGTC 60.391 55.000 0.00 0.00 0.00 4.20
455 456 0.035739 AACGGTAGTGCCCATTTCGT 59.964 50.000 0.00 0.00 0.00 3.85
456 457 0.446222 CAACGGTAGTGCCCATTTCG 59.554 55.000 0.00 0.00 0.00 3.46
457 458 0.808755 CCAACGGTAGTGCCCATTTC 59.191 55.000 0.00 0.00 0.00 2.17
458 459 0.402504 TCCAACGGTAGTGCCCATTT 59.597 50.000 0.00 0.00 0.00 2.32
459 460 0.035439 CTCCAACGGTAGTGCCCATT 60.035 55.000 0.00 0.00 0.00 3.16
460 461 1.198759 ACTCCAACGGTAGTGCCCAT 61.199 55.000 0.00 0.00 0.00 4.00
461 462 1.412453 AACTCCAACGGTAGTGCCCA 61.412 55.000 0.00 0.00 0.00 5.36
462 463 0.953960 CAACTCCAACGGTAGTGCCC 60.954 60.000 0.00 0.00 0.00 5.36
463 464 1.574702 GCAACTCCAACGGTAGTGCC 61.575 60.000 0.00 0.00 0.00 5.01
464 465 0.602905 AGCAACTCCAACGGTAGTGC 60.603 55.000 0.00 0.00 0.00 4.40
465 466 1.000955 AGAGCAACTCCAACGGTAGTG 59.999 52.381 0.00 0.00 0.00 2.74
466 467 1.339097 AGAGCAACTCCAACGGTAGT 58.661 50.000 0.00 0.00 0.00 2.73
467 468 3.587797 TTAGAGCAACTCCAACGGTAG 57.412 47.619 0.00 0.00 0.00 3.18
468 469 4.546829 AATTAGAGCAACTCCAACGGTA 57.453 40.909 0.00 0.00 0.00 4.02
469 470 3.418684 AATTAGAGCAACTCCAACGGT 57.581 42.857 0.00 0.00 0.00 4.83
470 471 3.306166 CGTAATTAGAGCAACTCCAACGG 59.694 47.826 0.00 0.00 0.00 4.44
471 472 3.241995 GCGTAATTAGAGCAACTCCAACG 60.242 47.826 7.71 0.00 0.00 4.10
472 473 3.682858 TGCGTAATTAGAGCAACTCCAAC 59.317 43.478 11.76 0.00 38.01 3.77
473 474 3.932822 TGCGTAATTAGAGCAACTCCAA 58.067 40.909 11.76 0.00 38.01 3.53
474 475 3.603158 TGCGTAATTAGAGCAACTCCA 57.397 42.857 11.76 0.00 38.01 3.86
480 481 5.933187 TGAGTTTTTGCGTAATTAGAGCA 57.067 34.783 10.49 10.49 39.33 4.26
481 482 6.623743 CGTATGAGTTTTTGCGTAATTAGAGC 59.376 38.462 6.04 6.04 0.00 4.09
482 483 7.891782 TCGTATGAGTTTTTGCGTAATTAGAG 58.108 34.615 0.00 0.00 0.00 2.43
483 484 7.756272 TCTCGTATGAGTTTTTGCGTAATTAGA 59.244 33.333 11.71 0.00 43.09 2.10
484 485 7.891782 TCTCGTATGAGTTTTTGCGTAATTAG 58.108 34.615 11.71 0.00 43.09 1.73
485 486 7.815398 TCTCGTATGAGTTTTTGCGTAATTA 57.185 32.000 11.71 0.00 43.09 1.40
486 487 6.715344 TCTCGTATGAGTTTTTGCGTAATT 57.285 33.333 11.71 0.00 43.09 1.40
487 488 6.715344 TTCTCGTATGAGTTTTTGCGTAAT 57.285 33.333 11.71 0.00 43.09 1.89
488 489 6.528014 TTTCTCGTATGAGTTTTTGCGTAA 57.472 33.333 11.71 0.00 43.09 3.18
489 490 6.528014 TTTTCTCGTATGAGTTTTTGCGTA 57.472 33.333 11.71 0.00 43.09 4.42
490 491 5.412526 TTTTCTCGTATGAGTTTTTGCGT 57.587 34.783 11.71 0.00 43.09 5.24
491 492 6.307155 AGATTTTCTCGTATGAGTTTTTGCG 58.693 36.000 11.71 0.00 43.09 4.85
492 493 7.712322 GAGATTTTCTCGTATGAGTTTTTGC 57.288 36.000 11.71 0.00 43.09 3.68
506 507 3.486542 GCATCACGGCAAGAGATTTTCTC 60.487 47.826 0.00 0.00 43.70 2.87
507 508 2.421424 GCATCACGGCAAGAGATTTTCT 59.579 45.455 0.00 0.00 37.93 2.52
508 509 2.478539 GGCATCACGGCAAGAGATTTTC 60.479 50.000 0.00 0.00 40.76 2.29
509 510 1.474077 GGCATCACGGCAAGAGATTTT 59.526 47.619 0.00 0.00 40.76 1.82
510 511 1.098050 GGCATCACGGCAAGAGATTT 58.902 50.000 0.00 0.00 40.76 2.17
511 512 0.749454 GGGCATCACGGCAAGAGATT 60.749 55.000 0.00 0.00 43.60 2.40
512 513 1.153086 GGGCATCACGGCAAGAGAT 60.153 57.895 0.00 0.00 43.60 2.75
513 514 2.268920 GGGCATCACGGCAAGAGA 59.731 61.111 0.00 0.00 43.60 3.10
514 515 2.930385 ATCGGGCATCACGGCAAGAG 62.930 60.000 0.00 0.00 43.60 2.85
515 516 2.923426 GATCGGGCATCACGGCAAGA 62.923 60.000 0.00 0.00 43.60 3.02
516 517 2.514592 ATCGGGCATCACGGCAAG 60.515 61.111 0.00 0.00 43.60 4.01
517 518 2.513666 GATCGGGCATCACGGCAA 60.514 61.111 0.00 0.00 43.60 4.52
518 519 4.545706 GGATCGGGCATCACGGCA 62.546 66.667 0.00 0.00 43.60 5.69
519 520 3.908285 TATTGGATCGGGCATCACGGC 62.908 57.143 0.00 0.00 40.20 5.68
520 521 0.034756 TATTGGATCGGGCATCACGG 59.965 55.000 0.00 0.00 32.33 4.94
521 522 1.148310 GTATTGGATCGGGCATCACG 58.852 55.000 0.00 0.00 32.33 4.35
522 523 2.254546 TGTATTGGATCGGGCATCAC 57.745 50.000 0.00 0.00 32.33 3.06
523 524 2.371510 TGATGTATTGGATCGGGCATCA 59.628 45.455 10.74 10.74 39.90 3.07
524 525 3.057969 TGATGTATTGGATCGGGCATC 57.942 47.619 0.00 0.00 34.88 3.91
525 526 3.726557 ATGATGTATTGGATCGGGCAT 57.273 42.857 0.00 0.00 0.00 4.40
526 527 3.411446 GAATGATGTATTGGATCGGGCA 58.589 45.455 0.00 0.00 0.00 5.36
527 528 2.416547 CGAATGATGTATTGGATCGGGC 59.583 50.000 0.00 0.00 0.00 6.13
528 529 2.416547 GCGAATGATGTATTGGATCGGG 59.583 50.000 0.00 0.00 0.00 5.14
529 530 2.092681 CGCGAATGATGTATTGGATCGG 59.907 50.000 0.00 0.00 0.00 4.18
530 531 2.092681 CCGCGAATGATGTATTGGATCG 59.907 50.000 8.23 0.00 0.00 3.69
531 532 2.159653 GCCGCGAATGATGTATTGGATC 60.160 50.000 8.23 0.00 0.00 3.36
532 533 1.806542 GCCGCGAATGATGTATTGGAT 59.193 47.619 8.23 0.00 0.00 3.41
533 534 1.202639 AGCCGCGAATGATGTATTGGA 60.203 47.619 8.23 0.00 0.00 3.53
534 535 1.229428 AGCCGCGAATGATGTATTGG 58.771 50.000 8.23 0.00 0.00 3.16
535 536 2.159973 CGTAGCCGCGAATGATGTATTG 60.160 50.000 8.23 0.00 0.00 1.90
536 537 2.058798 CGTAGCCGCGAATGATGTATT 58.941 47.619 8.23 0.00 0.00 1.89
537 538 1.668919 CCGTAGCCGCGAATGATGTAT 60.669 52.381 8.23 0.00 0.00 2.29
538 539 0.318360 CCGTAGCCGCGAATGATGTA 60.318 55.000 8.23 0.00 0.00 2.29
539 540 1.591594 CCGTAGCCGCGAATGATGT 60.592 57.895 8.23 0.00 0.00 3.06
540 541 2.943345 GCCGTAGCCGCGAATGATG 61.943 63.158 8.23 0.00 0.00 3.07
541 542 2.661866 GCCGTAGCCGCGAATGAT 60.662 61.111 8.23 0.00 0.00 2.45
544 545 4.807039 AACGCCGTAGCCGCGAAT 62.807 61.111 8.23 0.00 37.17 3.34
727 728 0.390998 GTGCAGGGAGCTCTTGTCTC 60.391 60.000 14.64 6.60 45.94 3.36
734 735 4.792804 GGCAGGTGCAGGGAGCTC 62.793 72.222 4.71 4.71 45.94 4.09
795 796 0.041839 GACGCAGCTTGTGAGTTGTG 60.042 55.000 2.89 2.89 46.27 3.33
796 797 1.160329 GGACGCAGCTTGTGAGTTGT 61.160 55.000 4.12 0.00 39.64 3.32
797 798 1.571460 GGACGCAGCTTGTGAGTTG 59.429 57.895 4.12 0.00 39.64 3.16
798 799 1.956170 CGGACGCAGCTTGTGAGTT 60.956 57.895 4.12 0.00 39.64 3.01
799 800 2.356313 CGGACGCAGCTTGTGAGT 60.356 61.111 4.12 0.00 42.70 3.41
800 801 2.356313 ACGGACGCAGCTTGTGAG 60.356 61.111 4.12 0.00 0.00 3.51
801 802 2.355837 GACGGACGCAGCTTGTGA 60.356 61.111 4.12 0.00 0.00 3.58
922 923 2.030958 CCAGTAACCGGACGGCAAC 61.031 63.158 9.46 9.16 39.32 4.17
944 945 1.346068 GATCTGTATCACCTGGGAGCC 59.654 57.143 0.00 0.00 31.93 4.70
945 946 1.000283 CGATCTGTATCACCTGGGAGC 60.000 57.143 0.00 0.00 31.93 4.70
946 947 1.615883 CCGATCTGTATCACCTGGGAG 59.384 57.143 0.00 0.00 31.93 4.30
947 948 1.704641 CCGATCTGTATCACCTGGGA 58.295 55.000 0.00 0.00 31.93 4.37
948 949 0.034059 GCCGATCTGTATCACCTGGG 59.966 60.000 0.00 0.00 31.93 4.45
983 999 1.301244 ATTGCTGCTAGCCGATCCG 60.301 57.895 13.29 0.00 41.51 4.18
1030 1046 3.157523 CGACACGACGACGAGCAC 61.158 66.667 15.32 3.61 42.66 4.40
1065 1081 2.567049 GTCTGCGCCGTCACTAGT 59.433 61.111 4.18 0.00 0.00 2.57
1066 1082 2.202623 GGTCTGCGCCGTCACTAG 60.203 66.667 4.18 0.00 0.00 2.57
1067 1083 4.111016 CGGTCTGCGCCGTCACTA 62.111 66.667 4.18 0.00 46.11 2.74
1239 1264 3.279434 GGTTCGGTGAGAGGCAATTAAT 58.721 45.455 0.00 0.00 0.00 1.40
1240 1265 2.706890 GGTTCGGTGAGAGGCAATTAA 58.293 47.619 0.00 0.00 0.00 1.40
1241 1266 1.404986 CGGTTCGGTGAGAGGCAATTA 60.405 52.381 0.00 0.00 0.00 1.40
1242 1267 0.673644 CGGTTCGGTGAGAGGCAATT 60.674 55.000 0.00 0.00 0.00 2.32
1322 1347 2.279517 CCGGAGCTGTACATCGCC 60.280 66.667 9.21 9.21 0.00 5.54
1355 1380 1.219393 GAGGCCGTCCTTGGAGAAG 59.781 63.158 0.00 0.00 44.46 2.85
1520 1545 0.392193 AGATCTTGGCCTGCTTGACG 60.392 55.000 3.32 0.00 0.00 4.35
1756 1782 2.408271 ATCATGCACGAGGTGACAAT 57.592 45.000 0.00 0.00 35.23 2.71
1910 1971 8.993121 GTCAAACATATGGTATCTGATTCGATT 58.007 33.333 7.80 0.00 0.00 3.34
1930 3198 4.620982 CCTCCTCATTTGGTTTGTCAAAC 58.379 43.478 18.43 18.43 39.13 2.93
1940 3208 4.222588 TGGTTAAAATGCCTCCTCATTTGG 59.777 41.667 2.93 0.00 43.56 3.28
1944 3212 6.322201 CACTAATGGTTAAAATGCCTCCTCAT 59.678 38.462 0.00 0.00 0.00 2.90
2030 3299 1.303074 CCTGAAGAGCTGCCTGCAA 60.303 57.895 0.00 0.00 45.94 4.08
2031 3300 2.350134 CCTGAAGAGCTGCCTGCA 59.650 61.111 0.00 0.00 45.94 4.41
2032 3301 3.132801 GCCTGAAGAGCTGCCTGC 61.133 66.667 0.00 0.00 43.29 4.85
2033 3302 1.449956 GAGCCTGAAGAGCTGCCTG 60.450 63.158 0.00 0.00 41.75 4.85
2034 3303 2.668120 GGAGCCTGAAGAGCTGCCT 61.668 63.158 0.00 0.00 42.32 4.75
2244 3513 1.134699 TCTGCTTGGATCTTGCCGTAG 60.135 52.381 0.00 0.00 0.00 3.51
2330 3604 5.015813 TCAGATCCATATAGGGAAGCAGA 57.984 43.478 10.70 5.55 41.12 4.26
2331 3605 5.022122 TCTCAGATCCATATAGGGAAGCAG 58.978 45.833 10.70 4.69 41.12 4.24
2333 3607 5.483583 AGTTCTCAGATCCATATAGGGAAGC 59.516 44.000 10.70 5.91 41.12 3.86
2334 3608 8.657387 TTAGTTCTCAGATCCATATAGGGAAG 57.343 38.462 10.70 3.36 41.12 3.46
2335 3609 9.040259 CATTAGTTCTCAGATCCATATAGGGAA 57.960 37.037 10.70 0.00 41.12 3.97
2337 3611 7.271511 GCATTAGTTCTCAGATCCATATAGGG 58.728 42.308 0.00 0.00 38.24 3.53
2338 3612 7.093156 TGGCATTAGTTCTCAGATCCATATAGG 60.093 40.741 0.00 0.00 39.47 2.57
2340 3614 7.797121 TGGCATTAGTTCTCAGATCCATATA 57.203 36.000 0.00 0.00 0.00 0.86
2341 3615 6.692849 TGGCATTAGTTCTCAGATCCATAT 57.307 37.500 0.00 0.00 0.00 1.78
2342 3616 6.470278 CATGGCATTAGTTCTCAGATCCATA 58.530 40.000 0.00 0.00 31.30 2.74
2343 3617 5.314529 CATGGCATTAGTTCTCAGATCCAT 58.685 41.667 0.00 0.00 32.53 3.41
2344 3618 4.445305 CCATGGCATTAGTTCTCAGATCCA 60.445 45.833 0.00 0.00 0.00 3.41
2345 3619 4.070716 CCATGGCATTAGTTCTCAGATCC 58.929 47.826 0.00 0.00 0.00 3.36
2346 3620 4.965814 TCCATGGCATTAGTTCTCAGATC 58.034 43.478 6.96 0.00 0.00 2.75
2347 3621 5.378230 TTCCATGGCATTAGTTCTCAGAT 57.622 39.130 6.96 0.00 0.00 2.90
2351 3625 6.038356 CACATTTTCCATGGCATTAGTTCTC 58.962 40.000 6.96 0.00 0.00 2.87
2362 3636 5.389859 TTTACTGCTCACATTTTCCATGG 57.610 39.130 4.97 4.97 0.00 3.66
2369 3643 7.275888 TGACAAGATTTTACTGCTCACATTT 57.724 32.000 0.00 0.00 0.00 2.32
2376 3650 6.016777 CCTTCACTTGACAAGATTTTACTGCT 60.017 38.462 21.95 0.00 0.00 4.24
2377 3651 6.145535 CCTTCACTTGACAAGATTTTACTGC 58.854 40.000 21.95 0.00 0.00 4.40
2395 3669 9.624373 ATTCAGATCCATATATAATGCCTTCAC 57.376 33.333 0.00 0.00 0.00 3.18
2422 3696 6.524586 GCAAGAATCTGCAAAGTTACACATAC 59.475 38.462 0.00 0.00 42.17 2.39
2559 3833 0.883833 CAGCGCCTCCAACTTTGATT 59.116 50.000 2.29 0.00 0.00 2.57
2577 3851 1.200519 CGATCTTCCAGGGGTTACCA 58.799 55.000 2.98 0.00 43.89 3.25
2584 3858 0.322975 CCATAGCCGATCTTCCAGGG 59.677 60.000 0.00 0.00 0.00 4.45
2586 3860 1.051812 ACCCATAGCCGATCTTCCAG 58.948 55.000 0.00 0.00 0.00 3.86
2604 3878 1.064389 AGAAGGATGGCCAGGCTAAAC 60.064 52.381 13.05 2.40 36.29 2.01
2607 3881 0.326522 TCAGAAGGATGGCCAGGCTA 60.327 55.000 13.05 5.38 36.29 3.93
2609 3883 0.536915 GATCAGAAGGATGGCCAGGC 60.537 60.000 13.05 1.26 36.00 4.85
2625 3899 4.141390 ACTTCCAGGGTGATAATGGTGATC 60.141 45.833 0.00 0.00 35.51 2.92
2652 3926 2.358322 TTTTCCTCCTTGTCCACACC 57.642 50.000 0.00 0.00 0.00 4.16
2665 3939 0.102300 GCACCGCTGTTGTTTTTCCT 59.898 50.000 0.00 0.00 0.00 3.36
2683 3957 4.845060 GCATAGTTAGTATGTCGTCGTAGC 59.155 45.833 8.62 0.00 40.80 3.58
2699 3973 5.013183 ACAAGAACCCTAGTCAAGCATAGTT 59.987 40.000 0.00 0.00 0.00 2.24
2764 4038 6.963796 ACAACAACAGCATAAGAAGAAGAAG 58.036 36.000 0.00 0.00 0.00 2.85
2765 4039 6.942532 ACAACAACAGCATAAGAAGAAGAA 57.057 33.333 0.00 0.00 0.00 2.52
2766 4040 7.307989 GCTTACAACAACAGCATAAGAAGAAGA 60.308 37.037 0.00 0.00 33.45 2.87
2982 5797 1.249407 TGTCGGTTTTAATGCCCACC 58.751 50.000 0.00 0.00 0.00 4.61
2998 5813 2.352342 TCGGTTCGGTTTTCAGTTTGTC 59.648 45.455 0.00 0.00 0.00 3.18
3001 5816 2.358015 TGTCGGTTCGGTTTTCAGTTT 58.642 42.857 0.00 0.00 0.00 2.66
3009 5824 1.605232 GGTTTCAATGTCGGTTCGGTT 59.395 47.619 0.00 0.00 0.00 4.44
3071 5893 3.058501 CGAACTGGCGGAATTAAAACTGT 60.059 43.478 0.00 0.00 0.00 3.55
3084 5906 0.941542 TGAGAAAAACCGAACTGGCG 59.058 50.000 0.00 0.00 43.94 5.69
3092 5914 2.309898 AAATCGCGTGAGAAAAACCG 57.690 45.000 5.77 0.00 0.00 4.44
3105 5927 1.523758 ATGGGCGGAGATAAAATCGC 58.476 50.000 0.00 0.00 46.35 4.58
3106 5928 4.568152 AAAATGGGCGGAGATAAAATCG 57.432 40.909 0.00 0.00 0.00 3.34
3168 5992 1.137086 TCCGAATCTCACCTTGCTAGC 59.863 52.381 8.10 8.10 0.00 3.42
3172 5996 2.356069 GGATTTCCGAATCTCACCTTGC 59.644 50.000 0.00 0.00 41.18 4.01
3174 5998 4.010349 GTTGGATTTCCGAATCTCACCTT 58.990 43.478 0.00 0.00 41.18 3.50
3176 6000 3.343617 TGTTGGATTTCCGAATCTCACC 58.656 45.455 0.00 0.00 41.18 4.02
3177 6001 4.035675 GGATGTTGGATTTCCGAATCTCAC 59.964 45.833 0.00 0.00 41.18 3.51
3186 6039 4.089361 AGAAACCTGGATGTTGGATTTCC 58.911 43.478 0.00 0.00 30.78 3.13
3187 6040 5.012893 AGAGAAACCTGGATGTTGGATTTC 58.987 41.667 0.00 0.00 0.00 2.17
3197 6050 2.350863 AGGTGGAGAGAAACCTGGAT 57.649 50.000 0.00 0.00 45.26 3.41
3203 6056 2.613223 GGTACTGCAGGTGGAGAGAAAC 60.613 54.545 19.93 0.28 36.93 2.78
3207 6060 0.976641 TTGGTACTGCAGGTGGAGAG 59.023 55.000 19.93 0.00 36.93 3.20
3217 6070 4.084013 GCGATATGTTATGGTTGGTACTGC 60.084 45.833 0.00 0.00 0.00 4.40
3219 6072 5.054477 GTGCGATATGTTATGGTTGGTACT 58.946 41.667 0.00 0.00 0.00 2.73
3235 6089 3.704566 AGAAATAGACAGGGTGTGCGATA 59.295 43.478 0.00 0.00 0.00 2.92
3246 6100 4.905866 CGCACAACAACAAGAAATAGACAG 59.094 41.667 0.00 0.00 0.00 3.51
3331 6326 7.941431 TTAAAAAGGGGAAAAAGGAAAAACC 57.059 32.000 0.00 0.00 39.35 3.27
3341 6336 9.749340 TGGTTACAATTTTTAAAAAGGGGAAAA 57.251 25.926 17.72 5.90 0.00 2.29
3342 6337 9.922477 ATGGTTACAATTTTTAAAAAGGGGAAA 57.078 25.926 17.72 8.95 0.00 3.13
3343 6338 9.922477 AATGGTTACAATTTTTAAAAAGGGGAA 57.078 25.926 17.72 12.18 0.00 3.97
3409 6406 4.616181 AAAGGTTCACGTGTTTTGAGAG 57.384 40.909 16.51 0.00 0.00 3.20
3456 6472 4.823442 TGGATCTGAAATATGGTCATGCAC 59.177 41.667 0.00 0.00 0.00 4.57
3464 6480 7.761249 GGAAAAGTTTGTGGATCTGAAATATGG 59.239 37.037 0.00 0.00 0.00 2.74
3491 6507 9.033481 CACTGAATTTGCTGTTTTAGAAATCAA 57.967 29.630 0.00 0.00 0.00 2.57
3492 6508 8.412456 TCACTGAATTTGCTGTTTTAGAAATCA 58.588 29.630 0.00 0.00 0.00 2.57
3494 6510 9.034544 GTTCACTGAATTTGCTGTTTTAGAAAT 57.965 29.630 0.00 0.00 0.00 2.17
3506 6522 4.516698 TGAGAAGGAGTTCACTGAATTTGC 59.483 41.667 0.00 0.00 34.82 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.