Multiple sequence alignment - TraesCS3A01G257000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G257000 chr3A 100.000 2639 0 0 1 2639 478909907 478912545 0.000000e+00 4874
1 TraesCS3A01G257000 chr3A 92.388 289 21 1 1 288 478702182 478702470 6.800000e-111 411
2 TraesCS3A01G257000 chr3A 87.578 322 31 9 1 319 234207697 234208012 5.370000e-97 364
3 TraesCS3A01G257000 chr3D 95.522 2233 62 12 426 2638 359511465 359513679 0.000000e+00 3535
4 TraesCS3A01G257000 chr3B 94.189 1807 68 14 426 2203 465501893 465503691 0.000000e+00 2721
5 TraesCS3A01G257000 chr3B 93.119 218 15 0 2416 2633 465503875 465504092 1.180000e-83 320
6 TraesCS3A01G257000 chr3B 93.827 162 6 3 2152 2311 465503691 465503850 9.440000e-60 241
7 TraesCS3A01G257000 chr4D 89.097 321 28 7 3 319 214432433 214432750 2.460000e-105 392
8 TraesCS3A01G257000 chr4D 88.608 316 31 5 1 314 259188745 259189057 1.920000e-101 379
9 TraesCS3A01G257000 chr5D 88.785 321 31 4 1 319 155158999 155158682 3.190000e-104 388
10 TraesCS3A01G257000 chr7D 88.889 315 31 3 1 314 265032468 265032157 4.120000e-103 385
11 TraesCS3A01G257000 chr7A 88.291 316 29 8 1 314 310106975 310106666 3.210000e-99 372
12 TraesCS3A01G257000 chr5A 87.654 324 31 8 1 319 233240662 233240981 4.150000e-98 368
13 TraesCS3A01G257000 chr6A 87.578 322 31 9 1 319 235842447 235842762 5.370000e-97 364


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G257000 chr3A 478909907 478912545 2638 False 4874 4874 100.000000 1 2639 1 chr3A.!!$F3 2638
1 TraesCS3A01G257000 chr3D 359511465 359513679 2214 False 3535 3535 95.522000 426 2638 1 chr3D.!!$F1 2212
2 TraesCS3A01G257000 chr3B 465501893 465504092 2199 False 1094 2721 93.711667 426 2633 3 chr3B.!!$F1 2207

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
73 74 0.031449 CGCCTCTTCGGAGAAGATCC 59.969 60.0 12.21 6.41 45.90 3.36 F
337 338 0.032017 ATACCTCAGAGGACCCGCTT 60.032 55.0 24.45 0.72 37.67 4.68 F
342 343 0.032515 TCAGAGGACCCGCTTCCATA 60.033 55.0 3.60 0.00 38.25 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1449 1489 0.740164 CGTCGACCTCCTTCTCGAGA 60.740 60.000 12.08 12.08 39.51 4.04 R
1599 1639 1.153745 GATCAGAACGACGGCAGCT 60.154 57.895 0.00 0.00 0.00 4.24 R
1937 1977 2.727916 CGGAAATAAAGTGCAGAACCGC 60.728 50.000 0.00 0.00 0.00 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 1.068753 AGCTTCGCTCATCCATCCG 59.931 57.895 0.00 0.00 30.62 4.18
29 30 1.958205 GCTTCGCTCATCCATCCGG 60.958 63.158 0.00 0.00 0.00 5.14
41 42 2.808919 TCCATCCGGATCTACTCCATC 58.191 52.381 15.88 0.00 45.24 3.51
42 43 1.474478 CCATCCGGATCTACTCCATCG 59.526 57.143 15.88 0.00 45.24 3.84
43 44 2.163509 CATCCGGATCTACTCCATCGT 58.836 52.381 15.88 0.00 45.24 3.73
44 45 1.605753 TCCGGATCTACTCCATCGTG 58.394 55.000 0.00 0.00 45.24 4.35
45 46 1.142262 TCCGGATCTACTCCATCGTGA 59.858 52.381 0.00 0.00 45.24 4.35
46 47 1.537638 CCGGATCTACTCCATCGTGAG 59.462 57.143 0.00 0.00 45.24 3.51
47 48 1.537638 CGGATCTACTCCATCGTGAGG 59.462 57.143 0.00 0.00 45.24 3.86
48 49 1.889829 GGATCTACTCCATCGTGAGGG 59.110 57.143 0.00 0.00 44.26 4.30
49 50 2.489255 GGATCTACTCCATCGTGAGGGA 60.489 54.545 2.95 2.95 44.26 4.20
50 51 2.054232 TCTACTCCATCGTGAGGGAC 57.946 55.000 0.00 0.00 36.20 4.46
51 52 1.033574 CTACTCCATCGTGAGGGACC 58.966 60.000 0.00 0.00 36.20 4.46
52 53 0.750546 TACTCCATCGTGAGGGACCG 60.751 60.000 0.00 0.00 36.20 4.79
53 54 2.036731 TCCATCGTGAGGGACCGT 59.963 61.111 0.00 0.00 36.20 4.83
54 55 2.005960 CTCCATCGTGAGGGACCGTC 62.006 65.000 7.26 7.26 36.20 4.79
55 56 2.102357 CATCGTGAGGGACCGTCG 59.898 66.667 9.55 0.00 0.00 5.12
56 57 3.823330 ATCGTGAGGGACCGTCGC 61.823 66.667 16.17 16.17 0.00 5.19
59 60 4.131088 GTGAGGGACCGTCGCCTC 62.131 72.222 20.83 20.83 35.63 4.70
60 61 4.361971 TGAGGGACCGTCGCCTCT 62.362 66.667 24.75 6.58 35.89 3.69
61 62 3.069318 GAGGGACCGTCGCCTCTT 61.069 66.667 20.55 2.73 33.67 2.85
62 63 3.066233 GAGGGACCGTCGCCTCTTC 62.066 68.421 20.55 7.49 33.67 2.87
63 64 4.493747 GGGACCGTCGCCTCTTCG 62.494 72.222 4.23 0.00 0.00 3.79
65 66 3.437795 GACCGTCGCCTCTTCGGA 61.438 66.667 9.75 0.00 46.05 4.55
66 67 3.398353 GACCGTCGCCTCTTCGGAG 62.398 68.421 9.75 0.00 46.05 4.63
67 68 3.132139 CCGTCGCCTCTTCGGAGA 61.132 66.667 0.00 0.00 46.05 3.71
68 69 2.697761 CCGTCGCCTCTTCGGAGAA 61.698 63.158 0.00 0.00 43.58 2.87
69 70 1.226435 CGTCGCCTCTTCGGAGAAG 60.226 63.158 0.00 3.56 43.58 2.85
70 71 1.645704 CGTCGCCTCTTCGGAGAAGA 61.646 60.000 11.41 11.41 43.58 2.87
71 72 0.741915 GTCGCCTCTTCGGAGAAGAT 59.258 55.000 12.21 0.00 43.58 2.40
72 73 1.025812 TCGCCTCTTCGGAGAAGATC 58.974 55.000 12.21 7.31 45.90 2.75
73 74 0.031449 CGCCTCTTCGGAGAAGATCC 59.969 60.000 12.21 6.41 45.90 3.36
97 98 3.343941 TTGGATTCAAGACCCCTAACG 57.656 47.619 0.00 0.00 0.00 3.18
98 99 1.557832 TGGATTCAAGACCCCTAACGG 59.442 52.381 0.00 0.00 0.00 4.44
99 100 1.835531 GGATTCAAGACCCCTAACGGA 59.164 52.381 0.00 0.00 0.00 4.69
100 101 2.237893 GGATTCAAGACCCCTAACGGAA 59.762 50.000 0.00 0.00 0.00 4.30
101 102 3.307904 GGATTCAAGACCCCTAACGGAAA 60.308 47.826 0.00 0.00 0.00 3.13
102 103 3.412237 TTCAAGACCCCTAACGGAAAG 57.588 47.619 0.00 0.00 0.00 2.62
103 104 2.612000 TCAAGACCCCTAACGGAAAGA 58.388 47.619 0.00 0.00 0.00 2.52
104 105 2.301009 TCAAGACCCCTAACGGAAAGAC 59.699 50.000 0.00 0.00 0.00 3.01
105 106 2.019807 AGACCCCTAACGGAAAGACA 57.980 50.000 0.00 0.00 0.00 3.41
106 107 2.547990 AGACCCCTAACGGAAAGACAT 58.452 47.619 0.00 0.00 0.00 3.06
107 108 2.500504 AGACCCCTAACGGAAAGACATC 59.499 50.000 0.00 0.00 0.00 3.06
108 109 2.235402 GACCCCTAACGGAAAGACATCA 59.765 50.000 0.00 0.00 0.00 3.07
109 110 2.640826 ACCCCTAACGGAAAGACATCAA 59.359 45.455 0.00 0.00 0.00 2.57
110 111 3.270877 CCCCTAACGGAAAGACATCAAG 58.729 50.000 0.00 0.00 0.00 3.02
111 112 3.055385 CCCCTAACGGAAAGACATCAAGA 60.055 47.826 0.00 0.00 0.00 3.02
112 113 3.933332 CCCTAACGGAAAGACATCAAGAC 59.067 47.826 0.00 0.00 0.00 3.01
113 114 3.933332 CCTAACGGAAAGACATCAAGACC 59.067 47.826 0.00 0.00 0.00 3.85
114 115 3.771577 AACGGAAAGACATCAAGACCT 57.228 42.857 0.00 0.00 0.00 3.85
115 116 3.320673 ACGGAAAGACATCAAGACCTC 57.679 47.619 0.00 0.00 0.00 3.85
116 117 2.028020 ACGGAAAGACATCAAGACCTCC 60.028 50.000 0.00 0.00 0.00 4.30
117 118 2.234908 CGGAAAGACATCAAGACCTCCT 59.765 50.000 0.00 0.00 0.00 3.69
118 119 3.677424 CGGAAAGACATCAAGACCTCCTC 60.677 52.174 0.00 0.00 0.00 3.71
119 120 3.261897 GGAAAGACATCAAGACCTCCTCA 59.738 47.826 0.00 0.00 0.00 3.86
120 121 3.971245 AAGACATCAAGACCTCCTCAC 57.029 47.619 0.00 0.00 0.00 3.51
121 122 1.821753 AGACATCAAGACCTCCTCACG 59.178 52.381 0.00 0.00 0.00 4.35
122 123 0.898320 ACATCAAGACCTCCTCACGG 59.102 55.000 0.00 0.00 0.00 4.94
123 124 1.186200 CATCAAGACCTCCTCACGGA 58.814 55.000 0.00 0.00 37.82 4.69
132 133 3.450282 TCCTCACGGAGAAGAACCA 57.550 52.632 2.84 0.00 33.30 3.67
133 134 1.257743 TCCTCACGGAGAAGAACCAG 58.742 55.000 2.84 0.00 33.30 4.00
134 135 0.969894 CCTCACGGAGAAGAACCAGT 59.030 55.000 2.84 0.00 0.00 4.00
135 136 1.344763 CCTCACGGAGAAGAACCAGTT 59.655 52.381 2.84 0.00 0.00 3.16
136 137 2.561419 CCTCACGGAGAAGAACCAGTTA 59.439 50.000 2.84 0.00 0.00 2.24
137 138 3.195825 CCTCACGGAGAAGAACCAGTTAT 59.804 47.826 2.84 0.00 0.00 1.89
138 139 4.425520 CTCACGGAGAAGAACCAGTTATC 58.574 47.826 0.00 0.00 0.00 1.75
139 140 3.194968 TCACGGAGAAGAACCAGTTATCC 59.805 47.826 0.00 0.00 0.00 2.59
140 141 3.195825 CACGGAGAAGAACCAGTTATCCT 59.804 47.826 0.00 0.00 0.00 3.24
141 142 3.838903 ACGGAGAAGAACCAGTTATCCTT 59.161 43.478 0.00 0.00 0.00 3.36
142 143 4.286291 ACGGAGAAGAACCAGTTATCCTTT 59.714 41.667 0.00 0.00 0.00 3.11
143 144 4.631813 CGGAGAAGAACCAGTTATCCTTTG 59.368 45.833 0.00 0.00 0.00 2.77
144 145 5.561679 GGAGAAGAACCAGTTATCCTTTGT 58.438 41.667 0.00 0.00 0.00 2.83
145 146 6.573680 CGGAGAAGAACCAGTTATCCTTTGTA 60.574 42.308 0.00 0.00 0.00 2.41
146 147 7.339482 GGAGAAGAACCAGTTATCCTTTGTAT 58.661 38.462 0.00 0.00 0.00 2.29
147 148 7.496263 GGAGAAGAACCAGTTATCCTTTGTATC 59.504 40.741 0.00 0.00 0.00 2.24
148 149 7.042335 AGAAGAACCAGTTATCCTTTGTATCG 58.958 38.462 0.00 0.00 0.00 2.92
149 150 6.295719 AGAACCAGTTATCCTTTGTATCGT 57.704 37.500 0.00 0.00 0.00 3.73
150 151 6.338937 AGAACCAGTTATCCTTTGTATCGTC 58.661 40.000 0.00 0.00 0.00 4.20
151 152 5.019785 ACCAGTTATCCTTTGTATCGTCC 57.980 43.478 0.00 0.00 0.00 4.79
152 153 4.141779 ACCAGTTATCCTTTGTATCGTCCC 60.142 45.833 0.00 0.00 0.00 4.46
153 154 4.101119 CCAGTTATCCTTTGTATCGTCCCT 59.899 45.833 0.00 0.00 0.00 4.20
154 155 5.396436 CCAGTTATCCTTTGTATCGTCCCTT 60.396 44.000 0.00 0.00 0.00 3.95
155 156 5.523916 CAGTTATCCTTTGTATCGTCCCTTG 59.476 44.000 0.00 0.00 0.00 3.61
156 157 5.189145 AGTTATCCTTTGTATCGTCCCTTGT 59.811 40.000 0.00 0.00 0.00 3.16
157 158 4.569719 ATCCTTTGTATCGTCCCTTGTT 57.430 40.909 0.00 0.00 0.00 2.83
158 159 3.670625 TCCTTTGTATCGTCCCTTGTTG 58.329 45.455 0.00 0.00 0.00 3.33
159 160 3.325425 TCCTTTGTATCGTCCCTTGTTGA 59.675 43.478 0.00 0.00 0.00 3.18
160 161 3.435671 CCTTTGTATCGTCCCTTGTTGAC 59.564 47.826 0.00 0.00 0.00 3.18
161 162 4.315803 CTTTGTATCGTCCCTTGTTGACT 58.684 43.478 0.00 0.00 0.00 3.41
162 163 4.345859 TTGTATCGTCCCTTGTTGACTT 57.654 40.909 0.00 0.00 0.00 3.01
163 164 4.345859 TGTATCGTCCCTTGTTGACTTT 57.654 40.909 0.00 0.00 0.00 2.66
164 165 4.062293 TGTATCGTCCCTTGTTGACTTTG 58.938 43.478 0.00 0.00 0.00 2.77
165 166 1.961793 TCGTCCCTTGTTGACTTTGG 58.038 50.000 0.00 0.00 0.00 3.28
166 167 1.487142 TCGTCCCTTGTTGACTTTGGA 59.513 47.619 0.00 0.00 0.00 3.53
167 168 2.105821 TCGTCCCTTGTTGACTTTGGAT 59.894 45.455 0.00 0.00 0.00 3.41
168 169 2.484264 CGTCCCTTGTTGACTTTGGATC 59.516 50.000 0.00 0.00 0.00 3.36
169 170 2.484264 GTCCCTTGTTGACTTTGGATCG 59.516 50.000 0.00 0.00 0.00 3.69
170 171 2.105821 TCCCTTGTTGACTTTGGATCGT 59.894 45.455 0.00 0.00 0.00 3.73
171 172 2.226437 CCCTTGTTGACTTTGGATCGTG 59.774 50.000 0.00 0.00 0.00 4.35
172 173 2.878406 CCTTGTTGACTTTGGATCGTGT 59.122 45.455 0.00 0.00 0.00 4.49
173 174 4.062293 CCTTGTTGACTTTGGATCGTGTA 58.938 43.478 0.00 0.00 0.00 2.90
174 175 4.695455 CCTTGTTGACTTTGGATCGTGTAT 59.305 41.667 0.00 0.00 0.00 2.29
175 176 5.163854 CCTTGTTGACTTTGGATCGTGTATC 60.164 44.000 0.00 0.00 0.00 2.24
176 177 5.147330 TGTTGACTTTGGATCGTGTATCT 57.853 39.130 0.00 0.00 34.75 1.98
177 178 5.168569 TGTTGACTTTGGATCGTGTATCTC 58.831 41.667 0.00 0.00 34.75 2.75
178 179 5.047306 TGTTGACTTTGGATCGTGTATCTCT 60.047 40.000 0.00 0.00 34.75 3.10
179 180 6.152154 TGTTGACTTTGGATCGTGTATCTCTA 59.848 38.462 0.00 0.00 34.75 2.43
180 181 6.961360 TGACTTTGGATCGTGTATCTCTAT 57.039 37.500 0.00 0.00 34.75 1.98
181 182 7.348080 TGACTTTGGATCGTGTATCTCTATT 57.652 36.000 0.00 0.00 34.75 1.73
182 183 7.782049 TGACTTTGGATCGTGTATCTCTATTT 58.218 34.615 0.00 0.00 34.75 1.40
183 184 7.706607 TGACTTTGGATCGTGTATCTCTATTTG 59.293 37.037 0.00 0.00 34.75 2.32
184 185 7.556844 ACTTTGGATCGTGTATCTCTATTTGT 58.443 34.615 0.00 0.00 34.75 2.83
185 186 7.492669 ACTTTGGATCGTGTATCTCTATTTGTG 59.507 37.037 0.00 0.00 34.75 3.33
186 187 6.465439 TGGATCGTGTATCTCTATTTGTGT 57.535 37.500 0.00 0.00 34.75 3.72
187 188 6.873997 TGGATCGTGTATCTCTATTTGTGTT 58.126 36.000 0.00 0.00 34.75 3.32
188 189 7.327975 TGGATCGTGTATCTCTATTTGTGTTT 58.672 34.615 0.00 0.00 34.75 2.83
189 190 7.491372 TGGATCGTGTATCTCTATTTGTGTTTC 59.509 37.037 0.00 0.00 34.75 2.78
190 191 6.864560 TCGTGTATCTCTATTTGTGTTTCG 57.135 37.500 0.00 0.00 0.00 3.46
191 192 6.614160 TCGTGTATCTCTATTTGTGTTTCGA 58.386 36.000 0.00 0.00 0.00 3.71
192 193 6.745907 TCGTGTATCTCTATTTGTGTTTCGAG 59.254 38.462 0.00 0.00 0.00 4.04
193 194 6.745907 CGTGTATCTCTATTTGTGTTTCGAGA 59.254 38.462 0.00 0.00 32.74 4.04
194 195 7.272731 CGTGTATCTCTATTTGTGTTTCGAGAA 59.727 37.037 0.00 0.00 32.06 2.87
195 196 9.088512 GTGTATCTCTATTTGTGTTTCGAGAAT 57.911 33.333 0.00 0.00 32.06 2.40
196 197 9.302345 TGTATCTCTATTTGTGTTTCGAGAATC 57.698 33.333 0.00 0.00 32.06 2.52
197 198 9.522804 GTATCTCTATTTGTGTTTCGAGAATCT 57.477 33.333 0.00 0.00 32.06 2.40
199 200 9.743057 ATCTCTATTTGTGTTTCGAGAATCTAG 57.257 33.333 0.00 0.00 32.06 2.43
200 201 7.702772 TCTCTATTTGTGTTTCGAGAATCTAGC 59.297 37.037 0.00 0.00 0.00 3.42
201 202 7.320399 TCTATTTGTGTTTCGAGAATCTAGCA 58.680 34.615 0.00 0.00 0.00 3.49
202 203 5.591643 TTTGTGTTTCGAGAATCTAGCAC 57.408 39.130 0.00 0.00 32.25 4.40
203 204 4.251543 TGTGTTTCGAGAATCTAGCACA 57.748 40.909 0.00 0.00 36.66 4.57
204 205 4.820897 TGTGTTTCGAGAATCTAGCACAT 58.179 39.130 0.00 0.00 35.12 3.21
205 206 4.627035 TGTGTTTCGAGAATCTAGCACATG 59.373 41.667 0.00 0.00 35.12 3.21
206 207 4.627467 GTGTTTCGAGAATCTAGCACATGT 59.373 41.667 0.00 0.00 32.04 3.21
207 208 4.627035 TGTTTCGAGAATCTAGCACATGTG 59.373 41.667 21.83 21.83 0.00 3.21
208 209 4.456280 TTCGAGAATCTAGCACATGTGT 57.544 40.909 26.01 15.36 0.00 3.72
223 224 4.847633 ACATGTGTGATCGTTTCTTGTTG 58.152 39.130 0.00 0.00 0.00 3.33
224 225 4.574421 ACATGTGTGATCGTTTCTTGTTGA 59.426 37.500 0.00 0.00 0.00 3.18
225 226 5.239306 ACATGTGTGATCGTTTCTTGTTGAT 59.761 36.000 0.00 0.00 0.00 2.57
226 227 5.749596 TGTGTGATCGTTTCTTGTTGATT 57.250 34.783 0.00 0.00 0.00 2.57
227 228 6.130298 TGTGTGATCGTTTCTTGTTGATTT 57.870 33.333 0.00 0.00 0.00 2.17
228 229 7.252965 TGTGTGATCGTTTCTTGTTGATTTA 57.747 32.000 0.00 0.00 0.00 1.40
229 230 7.698628 TGTGTGATCGTTTCTTGTTGATTTAA 58.301 30.769 0.00 0.00 0.00 1.52
230 231 7.855409 TGTGTGATCGTTTCTTGTTGATTTAAG 59.145 33.333 0.00 0.00 0.00 1.85
231 232 7.855904 GTGTGATCGTTTCTTGTTGATTTAAGT 59.144 33.333 0.00 0.00 0.00 2.24
232 233 7.855409 TGTGATCGTTTCTTGTTGATTTAAGTG 59.145 33.333 0.00 0.00 0.00 3.16
233 234 8.067784 GTGATCGTTTCTTGTTGATTTAAGTGA 58.932 33.333 0.00 0.00 0.00 3.41
234 235 8.783093 TGATCGTTTCTTGTTGATTTAAGTGAT 58.217 29.630 0.00 0.00 0.00 3.06
235 236 9.612620 GATCGTTTCTTGTTGATTTAAGTGATT 57.387 29.630 0.00 0.00 0.00 2.57
236 237 9.965824 ATCGTTTCTTGTTGATTTAAGTGATTT 57.034 25.926 0.00 0.00 0.00 2.17
237 238 9.796120 TCGTTTCTTGTTGATTTAAGTGATTTT 57.204 25.926 0.00 0.00 0.00 1.82
241 242 9.663904 TTCTTGTTGATTTAAGTGATTTTCTCG 57.336 29.630 0.00 0.00 0.00 4.04
242 243 8.836413 TCTTGTTGATTTAAGTGATTTTCTCGT 58.164 29.630 0.00 0.00 0.00 4.18
243 244 8.781067 TTGTTGATTTAAGTGATTTTCTCGTG 57.219 30.769 0.00 0.00 0.00 4.35
244 245 7.925993 TGTTGATTTAAGTGATTTTCTCGTGT 58.074 30.769 0.00 0.00 0.00 4.49
245 246 8.402472 TGTTGATTTAAGTGATTTTCTCGTGTT 58.598 29.630 0.00 0.00 0.00 3.32
246 247 9.233232 GTTGATTTAAGTGATTTTCTCGTGTTT 57.767 29.630 0.00 0.00 0.00 2.83
247 248 9.445786 TTGATTTAAGTGATTTTCTCGTGTTTC 57.554 29.630 0.00 0.00 0.00 2.78
248 249 8.073768 TGATTTAAGTGATTTTCTCGTGTTTCC 58.926 33.333 0.00 0.00 0.00 3.13
249 250 4.830826 AAGTGATTTTCTCGTGTTTCCC 57.169 40.909 0.00 0.00 0.00 3.97
250 251 4.086706 AGTGATTTTCTCGTGTTTCCCT 57.913 40.909 0.00 0.00 0.00 4.20
251 252 4.065789 AGTGATTTTCTCGTGTTTCCCTC 58.934 43.478 0.00 0.00 0.00 4.30
252 253 3.813166 GTGATTTTCTCGTGTTTCCCTCA 59.187 43.478 0.00 0.00 0.00 3.86
253 254 4.455877 GTGATTTTCTCGTGTTTCCCTCAT 59.544 41.667 0.00 0.00 0.00 2.90
254 255 4.455533 TGATTTTCTCGTGTTTCCCTCATG 59.544 41.667 0.00 0.00 0.00 3.07
255 256 3.762407 TTTCTCGTGTTTCCCTCATGA 57.238 42.857 0.00 0.00 0.00 3.07
256 257 3.981071 TTCTCGTGTTTCCCTCATGAT 57.019 42.857 0.00 0.00 31.69 2.45
257 258 3.981071 TCTCGTGTTTCCCTCATGATT 57.019 42.857 0.00 0.00 31.69 2.57
258 259 4.286297 TCTCGTGTTTCCCTCATGATTT 57.714 40.909 0.00 0.00 31.69 2.17
259 260 4.253685 TCTCGTGTTTCCCTCATGATTTC 58.746 43.478 0.00 0.00 31.69 2.17
260 261 4.020218 TCTCGTGTTTCCCTCATGATTTCT 60.020 41.667 0.00 0.00 31.69 2.52
261 262 4.253685 TCGTGTTTCCCTCATGATTTCTC 58.746 43.478 0.00 0.00 0.00 2.87
262 263 3.375299 CGTGTTTCCCTCATGATTTCTCC 59.625 47.826 0.00 0.00 0.00 3.71
263 264 4.593956 GTGTTTCCCTCATGATTTCTCCT 58.406 43.478 0.00 0.00 0.00 3.69
264 265 5.012893 GTGTTTCCCTCATGATTTCTCCTT 58.987 41.667 0.00 0.00 0.00 3.36
265 266 6.180472 GTGTTTCCCTCATGATTTCTCCTTA 58.820 40.000 0.00 0.00 0.00 2.69
266 267 6.830838 GTGTTTCCCTCATGATTTCTCCTTAT 59.169 38.462 0.00 0.00 0.00 1.73
267 268 6.830324 TGTTTCCCTCATGATTTCTCCTTATG 59.170 38.462 0.00 0.00 0.00 1.90
268 269 6.581388 TTCCCTCATGATTTCTCCTTATGT 57.419 37.500 0.00 0.00 0.00 2.29
269 270 6.581388 TCCCTCATGATTTCTCCTTATGTT 57.419 37.500 0.00 0.00 0.00 2.71
270 271 6.595682 TCCCTCATGATTTCTCCTTATGTTC 58.404 40.000 0.00 0.00 0.00 3.18
271 272 6.388100 TCCCTCATGATTTCTCCTTATGTTCT 59.612 38.462 0.00 0.00 0.00 3.01
272 273 7.059156 CCCTCATGATTTCTCCTTATGTTCTT 58.941 38.462 0.00 0.00 0.00 2.52
273 274 7.228308 CCCTCATGATTTCTCCTTATGTTCTTC 59.772 40.741 0.00 0.00 0.00 2.87
274 275 7.042187 CCTCATGATTTCTCCTTATGTTCTTCG 60.042 40.741 0.00 0.00 0.00 3.79
275 276 7.331026 TCATGATTTCTCCTTATGTTCTTCGT 58.669 34.615 0.00 0.00 0.00 3.85
276 277 6.968131 TGATTTCTCCTTATGTTCTTCGTG 57.032 37.500 0.00 0.00 0.00 4.35
277 278 6.464222 TGATTTCTCCTTATGTTCTTCGTGT 58.536 36.000 0.00 0.00 0.00 4.49
278 279 6.934645 TGATTTCTCCTTATGTTCTTCGTGTT 59.065 34.615 0.00 0.00 0.00 3.32
279 280 6.780706 TTTCTCCTTATGTTCTTCGTGTTC 57.219 37.500 0.00 0.00 0.00 3.18
280 281 5.462530 TCTCCTTATGTTCTTCGTGTTCA 57.537 39.130 0.00 0.00 0.00 3.18
281 282 6.037786 TCTCCTTATGTTCTTCGTGTTCAT 57.962 37.500 0.00 0.00 0.00 2.57
282 283 6.100004 TCTCCTTATGTTCTTCGTGTTCATC 58.900 40.000 0.00 0.00 0.00 2.92
283 284 4.862574 TCCTTATGTTCTTCGTGTTCATCG 59.137 41.667 0.00 0.00 0.00 3.84
284 285 4.492570 CCTTATGTTCTTCGTGTTCATCGC 60.493 45.833 0.00 0.00 0.00 4.58
290 291 3.309675 CGTGTTCATCGCGGGATC 58.690 61.111 12.67 2.29 44.94 3.36
291 292 2.237751 CGTGTTCATCGCGGGATCC 61.238 63.158 12.67 1.92 44.94 3.36
302 303 2.854522 CGGGATCCGCTTCTTTTGT 58.145 52.632 5.45 0.00 41.17 2.83
303 304 2.018542 CGGGATCCGCTTCTTTTGTA 57.981 50.000 5.45 0.00 41.17 2.41
304 305 1.933853 CGGGATCCGCTTCTTTTGTAG 59.066 52.381 5.45 0.00 41.17 2.74
305 306 2.418197 CGGGATCCGCTTCTTTTGTAGA 60.418 50.000 5.45 0.00 41.17 2.59
306 307 3.606687 GGGATCCGCTTCTTTTGTAGAA 58.393 45.455 5.45 0.00 40.57 2.10
317 318 5.344743 TCTTTTGTAGAAGATCGGCATCT 57.655 39.130 0.00 0.00 41.59 2.90
318 319 6.465439 TCTTTTGTAGAAGATCGGCATCTA 57.535 37.500 0.86 0.00 38.55 1.98
319 320 7.055667 TCTTTTGTAGAAGATCGGCATCTAT 57.944 36.000 0.86 0.00 38.55 1.98
320 321 8.178313 TCTTTTGTAGAAGATCGGCATCTATA 57.822 34.615 0.86 0.80 38.55 1.31
321 322 8.082852 TCTTTTGTAGAAGATCGGCATCTATAC 58.917 37.037 0.86 7.24 38.55 1.47
322 323 5.899120 TGTAGAAGATCGGCATCTATACC 57.101 43.478 13.39 0.00 38.55 2.73
323 324 5.571285 TGTAGAAGATCGGCATCTATACCT 58.429 41.667 13.39 0.00 38.55 3.08
324 325 5.648526 TGTAGAAGATCGGCATCTATACCTC 59.351 44.000 13.39 4.84 38.55 3.85
325 326 4.667573 AGAAGATCGGCATCTATACCTCA 58.332 43.478 0.86 0.00 38.55 3.86
326 327 4.704540 AGAAGATCGGCATCTATACCTCAG 59.295 45.833 0.86 0.00 38.55 3.35
327 328 4.308526 AGATCGGCATCTATACCTCAGA 57.691 45.455 0.00 0.00 37.63 3.27
328 329 4.269183 AGATCGGCATCTATACCTCAGAG 58.731 47.826 0.00 0.00 37.63 3.35
329 330 2.796557 TCGGCATCTATACCTCAGAGG 58.203 52.381 15.72 15.72 42.49 3.69
330 331 2.375509 TCGGCATCTATACCTCAGAGGA 59.624 50.000 24.45 7.26 37.67 3.71
331 332 2.490115 CGGCATCTATACCTCAGAGGAC 59.510 54.545 24.45 0.00 37.67 3.85
332 333 2.829120 GGCATCTATACCTCAGAGGACC 59.171 54.545 24.45 7.05 37.67 4.46
333 334 2.829120 GCATCTATACCTCAGAGGACCC 59.171 54.545 24.45 0.00 37.67 4.46
334 335 2.953284 TCTATACCTCAGAGGACCCG 57.047 55.000 24.45 8.63 37.67 5.28
335 336 1.202903 TCTATACCTCAGAGGACCCGC 60.203 57.143 24.45 0.00 37.67 6.13
336 337 0.851469 TATACCTCAGAGGACCCGCT 59.149 55.000 24.45 1.52 37.67 5.52
337 338 0.032017 ATACCTCAGAGGACCCGCTT 60.032 55.000 24.45 0.72 37.67 4.68
338 339 0.683504 TACCTCAGAGGACCCGCTTC 60.684 60.000 24.45 0.00 37.67 3.86
339 340 2.726351 CCTCAGAGGACCCGCTTCC 61.726 68.421 11.62 0.00 37.67 3.46
340 341 1.984570 CTCAGAGGACCCGCTTCCA 60.985 63.158 3.60 0.00 38.25 3.53
341 342 1.306141 TCAGAGGACCCGCTTCCAT 60.306 57.895 3.60 0.00 38.25 3.41
342 343 0.032515 TCAGAGGACCCGCTTCCATA 60.033 55.000 3.60 0.00 38.25 2.74
343 344 0.830648 CAGAGGACCCGCTTCCATAA 59.169 55.000 3.60 0.00 38.25 1.90
344 345 1.209504 CAGAGGACCCGCTTCCATAAA 59.790 52.381 3.60 0.00 38.25 1.40
345 346 1.913419 AGAGGACCCGCTTCCATAAAA 59.087 47.619 3.60 0.00 38.25 1.52
346 347 2.509964 AGAGGACCCGCTTCCATAAAAT 59.490 45.455 3.60 0.00 38.25 1.82
347 348 3.053619 AGAGGACCCGCTTCCATAAAATT 60.054 43.478 3.60 0.00 38.25 1.82
348 349 3.288092 AGGACCCGCTTCCATAAAATTC 58.712 45.455 3.60 0.00 38.25 2.17
349 350 3.020984 GGACCCGCTTCCATAAAATTCA 58.979 45.455 0.00 0.00 35.49 2.57
350 351 3.636764 GGACCCGCTTCCATAAAATTCAT 59.363 43.478 0.00 0.00 35.49 2.57
351 352 4.825085 GGACCCGCTTCCATAAAATTCATA 59.175 41.667 0.00 0.00 35.49 2.15
352 353 5.278315 GGACCCGCTTCCATAAAATTCATAC 60.278 44.000 0.00 0.00 35.49 2.39
353 354 5.445964 ACCCGCTTCCATAAAATTCATACT 58.554 37.500 0.00 0.00 0.00 2.12
354 355 5.891551 ACCCGCTTCCATAAAATTCATACTT 59.108 36.000 0.00 0.00 0.00 2.24
355 356 6.039382 ACCCGCTTCCATAAAATTCATACTTC 59.961 38.462 0.00 0.00 0.00 3.01
356 357 6.039270 CCCGCTTCCATAAAATTCATACTTCA 59.961 38.462 0.00 0.00 0.00 3.02
357 358 6.912591 CCGCTTCCATAAAATTCATACTTCAC 59.087 38.462 0.00 0.00 0.00 3.18
358 359 6.912591 CGCTTCCATAAAATTCATACTTCACC 59.087 38.462 0.00 0.00 0.00 4.02
359 360 7.415095 CGCTTCCATAAAATTCATACTTCACCA 60.415 37.037 0.00 0.00 0.00 4.17
360 361 7.917505 GCTTCCATAAAATTCATACTTCACCAG 59.082 37.037 0.00 0.00 0.00 4.00
361 362 9.177608 CTTCCATAAAATTCATACTTCACCAGA 57.822 33.333 0.00 0.00 0.00 3.86
362 363 9.527157 TTCCATAAAATTCATACTTCACCAGAA 57.473 29.630 0.00 0.00 0.00 3.02
363 364 9.527157 TCCATAAAATTCATACTTCACCAGAAA 57.473 29.630 0.00 0.00 32.35 2.52
364 365 9.573133 CCATAAAATTCATACTTCACCAGAAAC 57.427 33.333 0.00 0.00 32.35 2.78
365 366 9.573133 CATAAAATTCATACTTCACCAGAAACC 57.427 33.333 0.00 0.00 32.35 3.27
366 367 7.595819 AAAATTCATACTTCACCAGAAACCA 57.404 32.000 0.00 0.00 32.35 3.67
367 368 7.781324 AAATTCATACTTCACCAGAAACCAT 57.219 32.000 0.00 0.00 32.35 3.55
368 369 7.781324 AATTCATACTTCACCAGAAACCATT 57.219 32.000 0.00 0.00 32.35 3.16
369 370 7.781324 ATTCATACTTCACCAGAAACCATTT 57.219 32.000 0.00 0.00 32.35 2.32
370 371 6.817765 TCATACTTCACCAGAAACCATTTC 57.182 37.500 0.00 0.00 39.96 2.17
402 403 4.376340 AAAAGTTCACTGTCCAAAGCTG 57.624 40.909 0.00 0.00 0.00 4.24
403 404 2.717639 AGTTCACTGTCCAAAGCTGT 57.282 45.000 0.00 0.00 0.00 4.40
404 405 3.004752 AGTTCACTGTCCAAAGCTGTT 57.995 42.857 0.00 0.00 0.00 3.16
405 406 3.356290 AGTTCACTGTCCAAAGCTGTTT 58.644 40.909 0.00 0.00 0.00 2.83
406 407 3.763897 AGTTCACTGTCCAAAGCTGTTTT 59.236 39.130 0.00 0.00 0.00 2.43
407 408 4.220602 AGTTCACTGTCCAAAGCTGTTTTT 59.779 37.500 0.00 0.00 0.00 1.94
430 431 8.691661 TTTTAGAGAACTTCCAAAGCTATTGT 57.308 30.769 0.00 0.00 0.00 2.71
431 432 7.907214 TTAGAGAACTTCCAAAGCTATTGTC 57.093 36.000 0.00 0.00 0.00 3.18
432 433 5.869579 AGAGAACTTCCAAAGCTATTGTCA 58.130 37.500 0.00 0.00 0.00 3.58
433 434 5.703130 AGAGAACTTCCAAAGCTATTGTCAC 59.297 40.000 0.00 0.00 0.00 3.67
434 435 5.625150 AGAACTTCCAAAGCTATTGTCACT 58.375 37.500 0.00 0.00 0.00 3.41
435 436 6.769512 AGAACTTCCAAAGCTATTGTCACTA 58.230 36.000 0.00 0.00 0.00 2.74
510 512 5.048013 GGGCCGAAAATATTAGATGGAAAGG 60.048 44.000 0.00 0.00 0.00 3.11
522 524 0.606401 TGGAAAGGAGAAAGCGGCAG 60.606 55.000 1.45 0.00 0.00 4.85
551 553 1.918253 CATTGGGCTGCTACTCCCT 59.082 57.895 0.00 0.00 43.04 4.20
585 587 0.598065 AGGGCAAAGAACGTGCAATC 59.402 50.000 0.00 0.00 44.07 2.67
648 650 0.322456 TCTTCCATTTGCCCACTCGG 60.322 55.000 0.00 0.00 0.00 4.63
751 753 1.534235 ACGTTCCTCAGACTGGCCT 60.534 57.895 3.32 0.00 0.00 5.19
786 788 1.920734 TATGGCCACGATGCAACCCT 61.921 55.000 8.16 0.00 0.00 4.34
792 794 0.729116 CACGATGCAACCCTAAGCAG 59.271 55.000 0.00 0.00 44.94 4.24
803 805 1.517832 CTAAGCAGAGGGACCCACG 59.482 63.158 14.60 4.41 0.00 4.94
813 815 2.813908 GACCCACGCGTCATGGAC 60.814 66.667 21.91 13.92 39.87 4.02
928 936 0.918310 AGCAGAGCCTTTCCCCATCT 60.918 55.000 0.00 0.00 0.00 2.90
1374 1414 2.815647 CTCGACCGCAAGAAGGCC 60.816 66.667 0.00 0.00 43.02 5.19
1723 1763 1.790755 TGTCGTGGTGATGCTGTTAC 58.209 50.000 0.00 0.00 0.00 2.50
1732 1772 2.928116 GTGATGCTGTTACTACCGAACC 59.072 50.000 0.00 0.00 0.00 3.62
1855 1895 2.561037 GGGCTTTTGGTGGTGACGG 61.561 63.158 0.00 0.00 0.00 4.79
1937 1977 0.890542 TGGTTGCTGGCTTACTGCTG 60.891 55.000 0.00 0.00 43.66 4.41
1957 1997 2.227865 TGCGGTTCTGCACTTTATTTCC 59.772 45.455 1.90 0.00 40.62 3.13
1976 2016 5.713792 TTCCGTCTCTGATCTATCCATTC 57.286 43.478 0.00 0.00 0.00 2.67
2023 2063 7.015974 TCTCTAGATGATTGCTTGATGGTATGT 59.984 37.037 0.00 0.00 0.00 2.29
2101 2141 5.180680 ACAACTTATTACTTCGTTTCCTGCC 59.819 40.000 0.00 0.00 0.00 4.85
2220 2311 3.192922 GGTGCCGTGGTATGCGTC 61.193 66.667 0.00 0.00 0.00 5.19
2317 2410 5.831997 ACAGTACTTCCTTTGCAAAATGAC 58.168 37.500 13.84 5.88 0.00 3.06
2348 2441 1.596496 ATCTGGATTTCCCCTTCCGT 58.404 50.000 0.00 0.00 34.58 4.69
2349 2442 0.618458 TCTGGATTTCCCCTTCCGTG 59.382 55.000 0.00 0.00 34.58 4.94
2406 2499 4.484537 ACTCATGATGCTTGTTAGAGCT 57.515 40.909 0.00 0.00 43.11 4.09
2431 2524 4.141528 TGCTTCCATTTGGATTTTGTGGTT 60.142 37.500 0.00 0.00 44.98 3.67
2497 2590 8.744652 TGTGGATGTTGGTAGTTTAAATATTGG 58.255 33.333 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 1.742146 TCCGGATGGATGAGCGAAG 59.258 57.895 0.00 0.00 40.17 3.79
13 14 3.948702 TCCGGATGGATGAGCGAA 58.051 55.556 0.00 0.00 40.17 4.70
29 30 2.554893 GTCCCTCACGATGGAGTAGATC 59.445 54.545 0.00 0.00 32.91 2.75
30 31 2.588620 GTCCCTCACGATGGAGTAGAT 58.411 52.381 0.00 0.00 32.91 1.98
31 32 1.409802 GGTCCCTCACGATGGAGTAGA 60.410 57.143 0.00 0.00 32.91 2.59
32 33 1.033574 GGTCCCTCACGATGGAGTAG 58.966 60.000 0.00 0.00 32.91 2.57
33 34 0.750546 CGGTCCCTCACGATGGAGTA 60.751 60.000 0.00 0.00 32.91 2.59
34 35 2.052690 CGGTCCCTCACGATGGAGT 61.053 63.158 0.00 0.00 32.91 3.85
35 36 2.005960 GACGGTCCCTCACGATGGAG 62.006 65.000 0.00 0.00 34.62 3.86
36 37 2.036731 ACGGTCCCTCACGATGGA 59.963 61.111 0.00 0.00 0.00 3.41
37 38 2.494918 GACGGTCCCTCACGATGG 59.505 66.667 0.00 0.00 0.00 3.51
38 39 2.102357 CGACGGTCCCTCACGATG 59.898 66.667 1.91 0.00 0.00 3.84
39 40 3.823330 GCGACGGTCCCTCACGAT 61.823 66.667 1.91 0.00 0.00 3.73
42 43 4.131088 GAGGCGACGGTCCCTCAC 62.131 72.222 27.03 11.93 45.55 3.51
44 45 3.066233 GAAGAGGCGACGGTCCCTC 62.066 68.421 25.73 25.73 46.39 4.30
45 46 3.069318 GAAGAGGCGACGGTCCCT 61.069 66.667 15.31 15.31 0.00 4.20
46 47 4.493747 CGAAGAGGCGACGGTCCC 62.494 72.222 1.91 5.13 0.00 4.46
47 48 4.493747 CCGAAGAGGCGACGGTCC 62.494 72.222 1.91 0.00 41.47 4.46
48 49 3.398353 CTCCGAAGAGGCGACGGTC 62.398 68.421 0.00 0.00 45.71 4.79
49 50 3.441290 CTCCGAAGAGGCGACGGT 61.441 66.667 0.00 0.00 45.71 4.83
50 51 2.600122 CTTCTCCGAAGAGGCGACGG 62.600 65.000 0.00 0.00 46.71 4.79
51 52 1.226435 CTTCTCCGAAGAGGCGACG 60.226 63.158 0.00 0.00 40.83 5.12
52 53 0.741915 ATCTTCTCCGAAGAGGCGAC 59.258 55.000 11.43 0.00 40.83 5.19
53 54 1.025812 GATCTTCTCCGAAGAGGCGA 58.974 55.000 11.43 0.00 40.83 5.54
54 55 0.031449 GGATCTTCTCCGAAGAGGCG 59.969 60.000 11.43 0.00 40.83 5.52
55 56 3.978460 GGATCTTCTCCGAAGAGGC 57.022 57.895 11.43 6.59 40.83 4.70
76 77 6.143986 TCCGTTAGGGGTCTTGAATCCAAG 62.144 50.000 0.00 0.00 43.38 3.61
77 78 2.026636 CCGTTAGGGGTCTTGAATCCAA 60.027 50.000 0.00 0.00 0.00 3.53
78 79 1.557832 CCGTTAGGGGTCTTGAATCCA 59.442 52.381 0.00 0.00 0.00 3.41
79 80 1.835531 TCCGTTAGGGGTCTTGAATCC 59.164 52.381 0.00 0.00 38.33 3.01
80 81 3.622166 TTCCGTTAGGGGTCTTGAATC 57.378 47.619 0.00 0.00 38.33 2.52
81 82 3.585732 TCTTTCCGTTAGGGGTCTTGAAT 59.414 43.478 0.00 0.00 38.33 2.57
82 83 2.974099 TCTTTCCGTTAGGGGTCTTGAA 59.026 45.455 0.00 0.00 38.33 2.69
83 84 2.301009 GTCTTTCCGTTAGGGGTCTTGA 59.699 50.000 0.00 0.00 38.33 3.02
84 85 2.038033 TGTCTTTCCGTTAGGGGTCTTG 59.962 50.000 0.00 0.00 38.33 3.02
85 86 2.332117 TGTCTTTCCGTTAGGGGTCTT 58.668 47.619 0.00 0.00 38.33 3.01
86 87 2.019807 TGTCTTTCCGTTAGGGGTCT 57.980 50.000 0.00 0.00 38.33 3.85
87 88 2.235402 TGATGTCTTTCCGTTAGGGGTC 59.765 50.000 0.00 0.00 38.33 4.46
88 89 2.262637 TGATGTCTTTCCGTTAGGGGT 58.737 47.619 0.00 0.00 38.33 4.95
89 90 3.055385 TCTTGATGTCTTTCCGTTAGGGG 60.055 47.826 0.00 0.00 38.33 4.79
90 91 3.933332 GTCTTGATGTCTTTCCGTTAGGG 59.067 47.826 0.00 0.00 38.33 3.53
91 92 3.933332 GGTCTTGATGTCTTTCCGTTAGG 59.067 47.826 0.00 0.00 39.46 2.69
92 93 4.822026 AGGTCTTGATGTCTTTCCGTTAG 58.178 43.478 0.00 0.00 0.00 2.34
93 94 4.322499 GGAGGTCTTGATGTCTTTCCGTTA 60.322 45.833 0.00 0.00 0.00 3.18
94 95 3.557264 GGAGGTCTTGATGTCTTTCCGTT 60.557 47.826 0.00 0.00 0.00 4.44
95 96 2.028020 GGAGGTCTTGATGTCTTTCCGT 60.028 50.000 0.00 0.00 0.00 4.69
96 97 2.234908 AGGAGGTCTTGATGTCTTTCCG 59.765 50.000 0.00 0.00 0.00 4.30
97 98 3.261897 TGAGGAGGTCTTGATGTCTTTCC 59.738 47.826 0.00 0.00 0.00 3.13
98 99 4.249661 GTGAGGAGGTCTTGATGTCTTTC 58.750 47.826 0.00 0.00 0.00 2.62
99 100 3.306364 CGTGAGGAGGTCTTGATGTCTTT 60.306 47.826 0.00 0.00 0.00 2.52
100 101 2.232452 CGTGAGGAGGTCTTGATGTCTT 59.768 50.000 0.00 0.00 0.00 3.01
101 102 1.821753 CGTGAGGAGGTCTTGATGTCT 59.178 52.381 0.00 0.00 0.00 3.41
102 103 2.285827 CGTGAGGAGGTCTTGATGTC 57.714 55.000 0.00 0.00 0.00 3.06
116 117 2.821991 AACTGGTTCTTCTCCGTGAG 57.178 50.000 0.00 0.00 0.00 3.51
117 118 3.194968 GGATAACTGGTTCTTCTCCGTGA 59.805 47.826 0.00 0.00 0.00 4.35
118 119 3.195825 AGGATAACTGGTTCTTCTCCGTG 59.804 47.826 0.00 0.00 0.00 4.94
119 120 3.442076 AGGATAACTGGTTCTTCTCCGT 58.558 45.455 0.00 0.00 0.00 4.69
120 121 4.473477 AAGGATAACTGGTTCTTCTCCG 57.527 45.455 0.00 0.00 0.00 4.63
121 122 5.561679 ACAAAGGATAACTGGTTCTTCTCC 58.438 41.667 0.00 0.00 0.00 3.71
122 123 7.222999 CGATACAAAGGATAACTGGTTCTTCTC 59.777 40.741 0.00 0.00 0.00 2.87
123 124 7.042335 CGATACAAAGGATAACTGGTTCTTCT 58.958 38.462 0.00 0.00 0.00 2.85
124 125 6.817140 ACGATACAAAGGATAACTGGTTCTTC 59.183 38.462 0.00 0.00 0.00 2.87
125 126 6.708285 ACGATACAAAGGATAACTGGTTCTT 58.292 36.000 0.00 0.00 0.00 2.52
126 127 6.295719 ACGATACAAAGGATAACTGGTTCT 57.704 37.500 0.00 0.00 0.00 3.01
127 128 5.522824 GGACGATACAAAGGATAACTGGTTC 59.477 44.000 0.00 0.00 0.00 3.62
128 129 5.425630 GGACGATACAAAGGATAACTGGTT 58.574 41.667 0.00 0.00 0.00 3.67
129 130 4.141779 GGGACGATACAAAGGATAACTGGT 60.142 45.833 0.00 0.00 0.00 4.00
130 131 4.101119 AGGGACGATACAAAGGATAACTGG 59.899 45.833 0.00 0.00 0.00 4.00
131 132 5.277857 AGGGACGATACAAAGGATAACTG 57.722 43.478 0.00 0.00 0.00 3.16
132 133 5.189145 ACAAGGGACGATACAAAGGATAACT 59.811 40.000 0.00 0.00 0.00 2.24
133 134 5.425630 ACAAGGGACGATACAAAGGATAAC 58.574 41.667 0.00 0.00 0.00 1.89
134 135 5.687166 ACAAGGGACGATACAAAGGATAA 57.313 39.130 0.00 0.00 0.00 1.75
135 136 5.188163 TCAACAAGGGACGATACAAAGGATA 59.812 40.000 0.00 0.00 0.00 2.59
136 137 4.019681 TCAACAAGGGACGATACAAAGGAT 60.020 41.667 0.00 0.00 0.00 3.24
137 138 3.325425 TCAACAAGGGACGATACAAAGGA 59.675 43.478 0.00 0.00 0.00 3.36
138 139 3.435671 GTCAACAAGGGACGATACAAAGG 59.564 47.826 0.00 0.00 0.00 3.11
139 140 4.315803 AGTCAACAAGGGACGATACAAAG 58.684 43.478 0.00 0.00 40.20 2.77
140 141 4.345859 AGTCAACAAGGGACGATACAAA 57.654 40.909 0.00 0.00 40.20 2.83
141 142 4.345859 AAGTCAACAAGGGACGATACAA 57.654 40.909 0.00 0.00 40.20 2.41
142 143 4.062293 CAAAGTCAACAAGGGACGATACA 58.938 43.478 0.00 0.00 40.20 2.29
143 144 3.435671 CCAAAGTCAACAAGGGACGATAC 59.564 47.826 0.00 0.00 40.20 2.24
144 145 3.325425 TCCAAAGTCAACAAGGGACGATA 59.675 43.478 0.00 0.00 40.20 2.92
145 146 2.105821 TCCAAAGTCAACAAGGGACGAT 59.894 45.455 0.00 0.00 40.20 3.73
146 147 1.487142 TCCAAAGTCAACAAGGGACGA 59.513 47.619 0.00 0.00 40.20 4.20
147 148 1.961793 TCCAAAGTCAACAAGGGACG 58.038 50.000 0.00 0.00 40.20 4.79
148 149 2.484264 CGATCCAAAGTCAACAAGGGAC 59.516 50.000 0.00 0.00 35.50 4.46
149 150 2.105821 ACGATCCAAAGTCAACAAGGGA 59.894 45.455 0.00 0.00 0.00 4.20
150 151 2.226437 CACGATCCAAAGTCAACAAGGG 59.774 50.000 0.00 0.00 0.00 3.95
151 152 2.878406 ACACGATCCAAAGTCAACAAGG 59.122 45.455 0.00 0.00 0.00 3.61
152 153 5.639506 AGATACACGATCCAAAGTCAACAAG 59.360 40.000 0.00 0.00 34.80 3.16
153 154 5.547465 AGATACACGATCCAAAGTCAACAA 58.453 37.500 0.00 0.00 34.80 2.83
154 155 5.047306 AGAGATACACGATCCAAAGTCAACA 60.047 40.000 0.00 0.00 34.80 3.33
155 156 5.411781 AGAGATACACGATCCAAAGTCAAC 58.588 41.667 0.00 0.00 34.80 3.18
156 157 5.661056 AGAGATACACGATCCAAAGTCAA 57.339 39.130 0.00 0.00 34.80 3.18
157 158 6.961360 ATAGAGATACACGATCCAAAGTCA 57.039 37.500 0.00 0.00 34.80 3.41
158 159 7.707035 ACAAATAGAGATACACGATCCAAAGTC 59.293 37.037 0.00 0.00 34.80 3.01
159 160 7.492669 CACAAATAGAGATACACGATCCAAAGT 59.507 37.037 0.00 0.00 34.80 2.66
160 161 7.492669 ACACAAATAGAGATACACGATCCAAAG 59.507 37.037 0.00 0.00 34.80 2.77
161 162 7.327975 ACACAAATAGAGATACACGATCCAAA 58.672 34.615 0.00 0.00 34.80 3.28
162 163 6.873997 ACACAAATAGAGATACACGATCCAA 58.126 36.000 0.00 0.00 34.80 3.53
163 164 6.465439 ACACAAATAGAGATACACGATCCA 57.535 37.500 0.00 0.00 34.80 3.41
164 165 7.306051 CGAAACACAAATAGAGATACACGATCC 60.306 40.741 0.00 0.00 34.80 3.36
165 166 7.431376 TCGAAACACAAATAGAGATACACGATC 59.569 37.037 0.00 0.00 34.40 3.69
166 167 7.255569 TCGAAACACAAATAGAGATACACGAT 58.744 34.615 0.00 0.00 0.00 3.73
167 168 6.614160 TCGAAACACAAATAGAGATACACGA 58.386 36.000 0.00 0.00 0.00 4.35
168 169 6.745907 TCTCGAAACACAAATAGAGATACACG 59.254 38.462 0.00 0.00 30.81 4.49
169 170 8.462143 TTCTCGAAACACAAATAGAGATACAC 57.538 34.615 0.00 0.00 35.11 2.90
170 171 9.302345 GATTCTCGAAACACAAATAGAGATACA 57.698 33.333 0.00 0.00 35.11 2.29
171 172 9.522804 AGATTCTCGAAACACAAATAGAGATAC 57.477 33.333 0.00 0.00 35.11 2.24
173 174 9.743057 CTAGATTCTCGAAACACAAATAGAGAT 57.257 33.333 0.00 0.00 35.11 2.75
174 175 7.702772 GCTAGATTCTCGAAACACAAATAGAGA 59.297 37.037 0.00 0.00 33.53 3.10
175 176 7.489435 TGCTAGATTCTCGAAACACAAATAGAG 59.511 37.037 0.00 0.00 0.00 2.43
176 177 7.275779 GTGCTAGATTCTCGAAACACAAATAGA 59.724 37.037 0.00 0.00 0.00 1.98
177 178 7.063426 TGTGCTAGATTCTCGAAACACAAATAG 59.937 37.037 0.00 0.00 34.15 1.73
178 179 6.871492 TGTGCTAGATTCTCGAAACACAAATA 59.129 34.615 0.00 0.00 34.15 1.40
179 180 5.700832 TGTGCTAGATTCTCGAAACACAAAT 59.299 36.000 0.00 0.00 34.15 2.32
180 181 5.053811 TGTGCTAGATTCTCGAAACACAAA 58.946 37.500 0.00 0.00 34.15 2.83
181 182 4.627058 TGTGCTAGATTCTCGAAACACAA 58.373 39.130 0.00 0.00 34.15 3.33
182 183 4.251543 TGTGCTAGATTCTCGAAACACA 57.748 40.909 0.00 0.00 34.65 3.72
183 184 4.627467 ACATGTGCTAGATTCTCGAAACAC 59.373 41.667 0.00 0.00 0.00 3.32
184 185 4.627035 CACATGTGCTAGATTCTCGAAACA 59.373 41.667 13.94 0.00 0.00 2.83
185 186 4.627467 ACACATGTGCTAGATTCTCGAAAC 59.373 41.667 25.68 0.00 0.00 2.78
186 187 4.627035 CACACATGTGCTAGATTCTCGAAA 59.373 41.667 25.68 0.00 39.39 3.46
187 188 4.082245 TCACACATGTGCTAGATTCTCGAA 60.082 41.667 25.68 0.00 45.25 3.71
188 189 3.443681 TCACACATGTGCTAGATTCTCGA 59.556 43.478 25.68 4.26 45.25 4.04
189 190 3.774066 TCACACATGTGCTAGATTCTCG 58.226 45.455 25.68 0.00 45.25 4.04
190 191 4.443725 CGATCACACATGTGCTAGATTCTC 59.556 45.833 25.68 13.58 45.25 2.87
191 192 4.142071 ACGATCACACATGTGCTAGATTCT 60.142 41.667 25.68 11.77 45.25 2.40
192 193 4.115516 ACGATCACACATGTGCTAGATTC 58.884 43.478 25.68 16.39 45.25 2.52
193 194 4.128925 ACGATCACACATGTGCTAGATT 57.871 40.909 25.68 9.69 45.25 2.40
194 195 3.808466 ACGATCACACATGTGCTAGAT 57.192 42.857 25.68 23.39 45.25 1.98
195 196 3.592898 AACGATCACACATGTGCTAGA 57.407 42.857 25.68 20.00 45.25 2.43
196 197 3.928992 AGAAACGATCACACATGTGCTAG 59.071 43.478 25.68 15.48 45.25 3.42
197 198 3.925379 AGAAACGATCACACATGTGCTA 58.075 40.909 25.68 14.15 45.25 3.49
198 199 2.771089 AGAAACGATCACACATGTGCT 58.229 42.857 25.68 10.71 45.25 4.40
199 200 3.228749 CAAGAAACGATCACACATGTGC 58.771 45.455 25.68 8.39 45.25 4.57
200 201 4.472691 ACAAGAAACGATCACACATGTG 57.527 40.909 24.25 24.25 46.91 3.21
201 202 4.574421 TCAACAAGAAACGATCACACATGT 59.426 37.500 0.00 0.00 0.00 3.21
202 203 5.094429 TCAACAAGAAACGATCACACATG 57.906 39.130 0.00 0.00 0.00 3.21
203 204 5.947228 ATCAACAAGAAACGATCACACAT 57.053 34.783 0.00 0.00 0.00 3.21
204 205 5.749596 AATCAACAAGAAACGATCACACA 57.250 34.783 0.00 0.00 0.00 3.72
205 206 7.855904 ACTTAAATCAACAAGAAACGATCACAC 59.144 33.333 0.00 0.00 0.00 3.82
206 207 7.855409 CACTTAAATCAACAAGAAACGATCACA 59.145 33.333 0.00 0.00 0.00 3.58
207 208 8.067784 TCACTTAAATCAACAAGAAACGATCAC 58.932 33.333 0.00 0.00 0.00 3.06
208 209 8.148807 TCACTTAAATCAACAAGAAACGATCA 57.851 30.769 0.00 0.00 0.00 2.92
209 210 9.612620 AATCACTTAAATCAACAAGAAACGATC 57.387 29.630 0.00 0.00 0.00 3.69
210 211 9.965824 AAATCACTTAAATCAACAAGAAACGAT 57.034 25.926 0.00 0.00 0.00 3.73
211 212 9.796120 AAAATCACTTAAATCAACAAGAAACGA 57.204 25.926 0.00 0.00 0.00 3.85
215 216 9.663904 CGAGAAAATCACTTAAATCAACAAGAA 57.336 29.630 0.00 0.00 0.00 2.52
216 217 8.836413 ACGAGAAAATCACTTAAATCAACAAGA 58.164 29.630 0.00 0.00 0.00 3.02
217 218 8.895845 CACGAGAAAATCACTTAAATCAACAAG 58.104 33.333 0.00 0.00 0.00 3.16
218 219 8.402472 ACACGAGAAAATCACTTAAATCAACAA 58.598 29.630 0.00 0.00 0.00 2.83
219 220 7.925993 ACACGAGAAAATCACTTAAATCAACA 58.074 30.769 0.00 0.00 0.00 3.33
220 221 8.782533 AACACGAGAAAATCACTTAAATCAAC 57.217 30.769 0.00 0.00 0.00 3.18
221 222 9.445786 GAAACACGAGAAAATCACTTAAATCAA 57.554 29.630 0.00 0.00 0.00 2.57
222 223 8.073768 GGAAACACGAGAAAATCACTTAAATCA 58.926 33.333 0.00 0.00 0.00 2.57
223 224 7.537649 GGGAAACACGAGAAAATCACTTAAATC 59.462 37.037 0.00 0.00 0.00 2.17
224 225 7.230712 AGGGAAACACGAGAAAATCACTTAAAT 59.769 33.333 0.00 0.00 0.00 1.40
225 226 6.544564 AGGGAAACACGAGAAAATCACTTAAA 59.455 34.615 0.00 0.00 0.00 1.52
226 227 6.059484 AGGGAAACACGAGAAAATCACTTAA 58.941 36.000 0.00 0.00 0.00 1.85
227 228 5.617252 AGGGAAACACGAGAAAATCACTTA 58.383 37.500 0.00 0.00 0.00 2.24
228 229 4.461198 AGGGAAACACGAGAAAATCACTT 58.539 39.130 0.00 0.00 0.00 3.16
229 230 4.065789 GAGGGAAACACGAGAAAATCACT 58.934 43.478 0.00 0.00 0.00 3.41
230 231 3.813166 TGAGGGAAACACGAGAAAATCAC 59.187 43.478 0.00 0.00 0.00 3.06
231 232 4.079980 TGAGGGAAACACGAGAAAATCA 57.920 40.909 0.00 0.00 0.00 2.57
232 233 4.695455 TCATGAGGGAAACACGAGAAAATC 59.305 41.667 0.00 0.00 0.00 2.17
233 234 4.651778 TCATGAGGGAAACACGAGAAAAT 58.348 39.130 0.00 0.00 0.00 1.82
234 235 4.079980 TCATGAGGGAAACACGAGAAAA 57.920 40.909 0.00 0.00 0.00 2.29
235 236 3.762407 TCATGAGGGAAACACGAGAAA 57.238 42.857 0.00 0.00 0.00 2.52
236 237 3.981071 ATCATGAGGGAAACACGAGAA 57.019 42.857 0.09 0.00 0.00 2.87
237 238 3.981071 AATCATGAGGGAAACACGAGA 57.019 42.857 0.09 0.00 0.00 4.04
238 239 4.256920 AGAAATCATGAGGGAAACACGAG 58.743 43.478 0.09 0.00 0.00 4.18
239 240 4.253685 GAGAAATCATGAGGGAAACACGA 58.746 43.478 0.09 0.00 0.00 4.35
240 241 3.375299 GGAGAAATCATGAGGGAAACACG 59.625 47.826 0.09 0.00 0.00 4.49
241 242 4.593956 AGGAGAAATCATGAGGGAAACAC 58.406 43.478 0.09 0.00 0.00 3.32
242 243 4.934797 AGGAGAAATCATGAGGGAAACA 57.065 40.909 0.09 0.00 0.00 2.83
243 244 6.830838 ACATAAGGAGAAATCATGAGGGAAAC 59.169 38.462 0.09 0.00 0.00 2.78
244 245 6.973642 ACATAAGGAGAAATCATGAGGGAAA 58.026 36.000 0.09 0.00 0.00 3.13
245 246 6.581388 ACATAAGGAGAAATCATGAGGGAA 57.419 37.500 0.09 0.00 0.00 3.97
246 247 6.388100 AGAACATAAGGAGAAATCATGAGGGA 59.612 38.462 0.09 0.00 0.00 4.20
247 248 6.599445 AGAACATAAGGAGAAATCATGAGGG 58.401 40.000 0.09 0.00 0.00 4.30
248 249 7.042187 CGAAGAACATAAGGAGAAATCATGAGG 60.042 40.741 0.09 0.00 0.00 3.86
249 250 7.493971 ACGAAGAACATAAGGAGAAATCATGAG 59.506 37.037 0.09 0.00 0.00 2.90
250 251 7.278646 CACGAAGAACATAAGGAGAAATCATGA 59.721 37.037 0.00 0.00 0.00 3.07
251 252 7.065085 ACACGAAGAACATAAGGAGAAATCATG 59.935 37.037 0.00 0.00 0.00 3.07
252 253 7.106239 ACACGAAGAACATAAGGAGAAATCAT 58.894 34.615 0.00 0.00 0.00 2.45
253 254 6.464222 ACACGAAGAACATAAGGAGAAATCA 58.536 36.000 0.00 0.00 0.00 2.57
254 255 6.969828 ACACGAAGAACATAAGGAGAAATC 57.030 37.500 0.00 0.00 0.00 2.17
255 256 6.934645 TGAACACGAAGAACATAAGGAGAAAT 59.065 34.615 0.00 0.00 0.00 2.17
256 257 6.285224 TGAACACGAAGAACATAAGGAGAAA 58.715 36.000 0.00 0.00 0.00 2.52
257 258 5.849510 TGAACACGAAGAACATAAGGAGAA 58.150 37.500 0.00 0.00 0.00 2.87
258 259 5.462530 TGAACACGAAGAACATAAGGAGA 57.537 39.130 0.00 0.00 0.00 3.71
259 260 5.004821 CGATGAACACGAAGAACATAAGGAG 59.995 44.000 0.00 0.00 0.00 3.69
260 261 4.862574 CGATGAACACGAAGAACATAAGGA 59.137 41.667 0.00 0.00 0.00 3.36
261 262 4.492570 GCGATGAACACGAAGAACATAAGG 60.493 45.833 0.00 0.00 0.00 2.69
262 263 4.569029 GCGATGAACACGAAGAACATAAG 58.431 43.478 0.00 0.00 0.00 1.73
263 264 3.060230 CGCGATGAACACGAAGAACATAA 59.940 43.478 0.00 0.00 0.00 1.90
264 265 2.596862 CGCGATGAACACGAAGAACATA 59.403 45.455 0.00 0.00 0.00 2.29
265 266 1.390123 CGCGATGAACACGAAGAACAT 59.610 47.619 0.00 0.00 0.00 2.71
266 267 0.781787 CGCGATGAACACGAAGAACA 59.218 50.000 0.00 0.00 0.00 3.18
267 268 0.093026 CCGCGATGAACACGAAGAAC 59.907 55.000 8.23 0.00 0.00 3.01
268 269 1.011968 CCCGCGATGAACACGAAGAA 61.012 55.000 8.23 0.00 0.00 2.52
269 270 1.445410 CCCGCGATGAACACGAAGA 60.445 57.895 8.23 0.00 0.00 2.87
270 271 0.806102 ATCCCGCGATGAACACGAAG 60.806 55.000 8.23 0.00 0.00 3.79
271 272 0.804544 GATCCCGCGATGAACACGAA 60.805 55.000 8.23 0.00 0.00 3.85
272 273 1.226859 GATCCCGCGATGAACACGA 60.227 57.895 8.23 0.00 0.00 4.35
273 274 2.237751 GGATCCCGCGATGAACACG 61.238 63.158 8.23 0.00 0.00 4.49
274 275 2.237751 CGGATCCCGCGATGAACAC 61.238 63.158 8.23 0.37 41.17 3.32
275 276 2.106131 CGGATCCCGCGATGAACA 59.894 61.111 8.23 0.00 41.17 3.18
284 285 3.925530 TTCTACAAAAGAAGCGGATCCCG 60.926 47.826 6.06 2.49 43.76 5.14
285 286 3.261981 TCTACAAAAGAAGCGGATCCC 57.738 47.619 6.06 0.00 0.00 3.85
294 295 5.734720 AGATGCCGATCTTCTACAAAAGAA 58.265 37.500 0.00 0.00 42.07 2.52
295 296 5.344743 AGATGCCGATCTTCTACAAAAGA 57.655 39.130 0.00 0.00 35.15 2.52
296 297 7.329717 GGTATAGATGCCGATCTTCTACAAAAG 59.670 40.741 0.00 0.00 39.76 2.27
297 298 7.015292 AGGTATAGATGCCGATCTTCTACAAAA 59.985 37.037 0.00 0.00 39.76 2.44
298 299 6.493802 AGGTATAGATGCCGATCTTCTACAAA 59.506 38.462 0.00 0.00 39.76 2.83
299 300 6.010850 AGGTATAGATGCCGATCTTCTACAA 58.989 40.000 0.00 0.00 39.76 2.41
300 301 5.571285 AGGTATAGATGCCGATCTTCTACA 58.429 41.667 0.00 0.00 39.76 2.74
301 302 5.648526 TGAGGTATAGATGCCGATCTTCTAC 59.351 44.000 0.00 0.00 39.76 2.59
302 303 5.816682 TGAGGTATAGATGCCGATCTTCTA 58.183 41.667 0.00 0.00 39.76 2.10
303 304 4.667573 TGAGGTATAGATGCCGATCTTCT 58.332 43.478 0.00 0.00 39.76 2.85
304 305 4.702612 TCTGAGGTATAGATGCCGATCTTC 59.297 45.833 0.00 0.00 39.76 2.87
305 306 4.667573 TCTGAGGTATAGATGCCGATCTT 58.332 43.478 0.00 0.00 39.76 2.40
306 307 4.269183 CTCTGAGGTATAGATGCCGATCT 58.731 47.826 0.00 0.00 42.03 2.75
307 308 3.380004 CCTCTGAGGTATAGATGCCGATC 59.620 52.174 15.76 0.00 37.65 3.69
308 309 3.010696 TCCTCTGAGGTATAGATGCCGAT 59.989 47.826 22.50 0.00 37.65 4.18
309 310 2.375509 TCCTCTGAGGTATAGATGCCGA 59.624 50.000 22.50 0.00 37.65 5.54
310 311 2.490115 GTCCTCTGAGGTATAGATGCCG 59.510 54.545 22.50 0.00 37.65 5.69
311 312 2.829120 GGTCCTCTGAGGTATAGATGCC 59.171 54.545 22.50 9.64 36.53 4.40
312 313 2.829120 GGGTCCTCTGAGGTATAGATGC 59.171 54.545 22.50 5.08 36.53 3.91
313 314 3.085533 CGGGTCCTCTGAGGTATAGATG 58.914 54.545 22.50 4.92 36.53 2.90
314 315 2.555670 GCGGGTCCTCTGAGGTATAGAT 60.556 54.545 22.50 0.00 36.53 1.98
315 316 1.202903 GCGGGTCCTCTGAGGTATAGA 60.203 57.143 22.50 0.51 36.53 1.98
316 317 1.202952 AGCGGGTCCTCTGAGGTATAG 60.203 57.143 22.50 13.82 36.53 1.31
317 318 0.851469 AGCGGGTCCTCTGAGGTATA 59.149 55.000 22.50 1.30 36.53 1.47
318 319 0.032017 AAGCGGGTCCTCTGAGGTAT 60.032 55.000 22.50 2.06 36.53 2.73
319 320 0.683504 GAAGCGGGTCCTCTGAGGTA 60.684 60.000 22.50 7.59 36.53 3.08
320 321 1.985116 GAAGCGGGTCCTCTGAGGT 60.985 63.158 22.50 1.87 36.53 3.85
321 322 2.726351 GGAAGCGGGTCCTCTGAGG 61.726 68.421 17.84 17.84 36.46 3.86
322 323 1.333636 ATGGAAGCGGGTCCTCTGAG 61.334 60.000 0.00 0.00 38.62 3.35
323 324 0.032515 TATGGAAGCGGGTCCTCTGA 60.033 55.000 5.83 0.00 38.62 3.27
324 325 0.830648 TTATGGAAGCGGGTCCTCTG 59.169 55.000 5.83 0.00 38.62 3.35
325 326 1.580059 TTTATGGAAGCGGGTCCTCT 58.420 50.000 5.83 0.00 38.62 3.69
326 327 2.413310 TTTTATGGAAGCGGGTCCTC 57.587 50.000 5.83 0.00 38.62 3.71
327 328 3.288092 GAATTTTATGGAAGCGGGTCCT 58.712 45.455 5.83 0.00 38.62 3.85
328 329 3.020984 TGAATTTTATGGAAGCGGGTCC 58.979 45.455 0.00 0.00 38.27 4.46
329 330 4.918810 ATGAATTTTATGGAAGCGGGTC 57.081 40.909 0.00 0.00 0.00 4.46
330 331 5.445964 AGTATGAATTTTATGGAAGCGGGT 58.554 37.500 0.00 0.00 0.00 5.28
331 332 6.039270 TGAAGTATGAATTTTATGGAAGCGGG 59.961 38.462 0.00 0.00 0.00 6.13
332 333 6.912591 GTGAAGTATGAATTTTATGGAAGCGG 59.087 38.462 0.00 0.00 0.00 5.52
333 334 6.912591 GGTGAAGTATGAATTTTATGGAAGCG 59.087 38.462 0.00 0.00 0.00 4.68
334 335 7.771183 TGGTGAAGTATGAATTTTATGGAAGC 58.229 34.615 0.00 0.00 0.00 3.86
335 336 9.177608 TCTGGTGAAGTATGAATTTTATGGAAG 57.822 33.333 0.00 0.00 0.00 3.46
336 337 9.527157 TTCTGGTGAAGTATGAATTTTATGGAA 57.473 29.630 0.00 0.00 0.00 3.53
337 338 9.527157 TTTCTGGTGAAGTATGAATTTTATGGA 57.473 29.630 0.00 0.00 33.28 3.41
338 339 9.573133 GTTTCTGGTGAAGTATGAATTTTATGG 57.427 33.333 0.00 0.00 33.28 2.74
339 340 9.573133 GGTTTCTGGTGAAGTATGAATTTTATG 57.427 33.333 0.00 0.00 33.28 1.90
340 341 9.308000 TGGTTTCTGGTGAAGTATGAATTTTAT 57.692 29.630 0.00 0.00 33.28 1.40
341 342 8.698973 TGGTTTCTGGTGAAGTATGAATTTTA 57.301 30.769 0.00 0.00 33.28 1.52
342 343 7.595819 TGGTTTCTGGTGAAGTATGAATTTT 57.404 32.000 0.00 0.00 33.28 1.82
343 344 7.781324 ATGGTTTCTGGTGAAGTATGAATTT 57.219 32.000 0.00 0.00 33.28 1.82
344 345 7.781324 AATGGTTTCTGGTGAAGTATGAATT 57.219 32.000 0.00 0.00 33.28 2.17
345 346 7.781324 AAATGGTTTCTGGTGAAGTATGAAT 57.219 32.000 0.00 0.00 33.28 2.57
346 347 7.214467 GAAATGGTTTCTGGTGAAGTATGAA 57.786 36.000 0.00 0.00 36.73 2.57
347 348 6.817765 GAAATGGTTTCTGGTGAAGTATGA 57.182 37.500 0.00 0.00 36.73 2.15
380 381 4.220602 ACAGCTTTGGACAGTGAACTTTTT 59.779 37.500 0.00 0.00 0.00 1.94
381 382 3.763897 ACAGCTTTGGACAGTGAACTTTT 59.236 39.130 0.00 0.00 0.00 2.27
382 383 3.356290 ACAGCTTTGGACAGTGAACTTT 58.644 40.909 0.00 0.00 0.00 2.66
383 384 3.004752 ACAGCTTTGGACAGTGAACTT 57.995 42.857 0.00 0.00 0.00 2.66
384 385 2.717639 ACAGCTTTGGACAGTGAACT 57.282 45.000 0.00 0.00 0.00 3.01
385 386 3.782889 AAACAGCTTTGGACAGTGAAC 57.217 42.857 0.00 0.00 0.00 3.18
386 387 4.799564 AAAAACAGCTTTGGACAGTGAA 57.200 36.364 0.00 0.00 0.00 3.18
404 405 9.131791 ACAATAGCTTTGGAAGTTCTCTAAAAA 57.868 29.630 2.25 0.00 34.45 1.94
405 406 8.691661 ACAATAGCTTTGGAAGTTCTCTAAAA 57.308 30.769 2.25 0.00 34.45 1.52
406 407 7.936847 TGACAATAGCTTTGGAAGTTCTCTAAA 59.063 33.333 2.25 2.27 33.81 1.85
407 408 7.387948 GTGACAATAGCTTTGGAAGTTCTCTAA 59.612 37.037 2.25 0.00 0.00 2.10
408 409 6.874134 GTGACAATAGCTTTGGAAGTTCTCTA 59.126 38.462 2.25 0.00 0.00 2.43
409 410 5.703130 GTGACAATAGCTTTGGAAGTTCTCT 59.297 40.000 2.25 0.00 0.00 3.10
410 411 5.703130 AGTGACAATAGCTTTGGAAGTTCTC 59.297 40.000 2.25 0.00 0.00 2.87
411 412 5.625150 AGTGACAATAGCTTTGGAAGTTCT 58.375 37.500 2.25 0.00 0.00 3.01
412 413 5.948992 AGTGACAATAGCTTTGGAAGTTC 57.051 39.130 0.00 0.00 0.00 3.01
413 414 7.817418 TTTAGTGACAATAGCTTTGGAAGTT 57.183 32.000 0.00 0.00 0.00 2.66
414 415 7.817418 TTTTAGTGACAATAGCTTTGGAAGT 57.183 32.000 0.00 0.00 0.00 3.01
464 465 3.060363 CACTACGACGGCACATAAAGTTC 59.940 47.826 0.00 0.00 0.00 3.01
510 512 1.523758 TTTTCCTCTGCCGCTTTCTC 58.476 50.000 0.00 0.00 0.00 2.87
522 524 1.134610 CAGCCCAATGCCATTTTCCTC 60.135 52.381 0.00 0.00 42.71 3.71
573 575 2.086094 TGCATCATGATTGCACGTTCT 58.914 42.857 21.39 0.00 33.24 3.01
585 587 0.942252 ATGTAGTGCGCTGCATCATG 59.058 50.000 23.08 0.00 43.03 3.07
654 656 1.966451 GTTGAGGAGGTTGGTGCCG 60.966 63.158 0.00 0.00 0.00 5.69
655 657 1.150536 TGTTGAGGAGGTTGGTGCC 59.849 57.895 0.00 0.00 0.00 5.01
751 753 4.966168 TGGCCATACCTGTCAGTTATTCTA 59.034 41.667 0.00 0.00 40.22 2.10
786 788 2.656069 GCGTGGGTCCCTCTGCTTA 61.656 63.158 10.00 0.00 0.00 3.09
792 794 3.771160 ATGACGCGTGGGTCCCTC 61.771 66.667 20.70 4.42 36.07 4.30
803 805 2.877691 GCTTTGGGTCCATGACGC 59.122 61.111 0.00 4.52 44.15 5.19
826 828 0.798776 CGGAAATATCTGGATGCGCC 59.201 55.000 4.18 0.00 37.10 6.53
1449 1489 0.740164 CGTCGACCTCCTTCTCGAGA 60.740 60.000 12.08 12.08 39.51 4.04
1532 1572 1.306226 ACTCCCTCTTCCTTCGGGG 60.306 63.158 0.00 0.00 38.55 5.73
1599 1639 1.153745 GATCAGAACGACGGCAGCT 60.154 57.895 0.00 0.00 0.00 4.24
1723 1763 5.469421 AGACATATTACTCTCGGTTCGGTAG 59.531 44.000 0.00 0.00 0.00 3.18
1855 1895 6.192360 GTTGACAAAGTGTCTACACATTCAC 58.808 40.000 15.19 6.61 46.95 3.18
1937 1977 2.727916 CGGAAATAAAGTGCAGAACCGC 60.728 50.000 0.00 0.00 0.00 5.68
1976 2016 7.719483 AGAGATGCAAACCATTAATAACCATG 58.281 34.615 0.00 0.00 33.29 3.66
2023 2063 7.014326 ACGCATTGGTAAGAATAGAGATGTCTA 59.986 37.037 1.50 1.50 39.70 2.59
2088 2128 3.191162 TCATCAAATGGCAGGAAACGAAG 59.809 43.478 0.00 0.00 0.00 3.79
2090 2130 2.789213 TCATCAAATGGCAGGAAACGA 58.211 42.857 0.00 0.00 0.00 3.85
2220 2311 3.922240 GCTTATGTGCAAGGAACAACATG 59.078 43.478 0.00 0.00 0.00 3.21
2317 2410 6.294731 GGGGAAATCCAGATTCCATAAAATCG 60.295 42.308 7.53 0.00 40.00 3.34
2348 2441 1.601903 GTCACACCAGCAACGAATTCA 59.398 47.619 6.22 0.00 0.00 2.57
2349 2442 1.069227 GGTCACACCAGCAACGAATTC 60.069 52.381 0.00 0.00 38.42 2.17
2431 2524 6.070424 ACGGATAAAGGTGAAGGAATTCTACA 60.070 38.462 5.23 0.93 0.00 2.74
2497 2590 9.997482 TCACTGTCTAAAATTAAAAGTGAACAC 57.003 29.630 0.00 0.00 39.52 3.32
2533 2626 5.449314 CGGTCACACAAGGAAAACATGTAAA 60.449 40.000 0.00 0.00 28.39 2.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.