>input_sequence_73214
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-------------------------------------------------------ATGGAGAACGGCGACGAAACCCTCG
TCTCCC------------CCACCGCT------------GAGGCCGAGAAGGCTGCGCCCAACGGAGGCGTCGCGGGCGAG
GAGGTCACCCTCGCCGACGCCGTCCACCCCGCCAAGTCCTACGCCGCCGTCGCCGCCAACGCCGAGATCGAGGACCTCCG
CGCCACCAAGCTCGACCTCGAGGAGCAGCTCGCCAACGCCAGCCAGGAGAACAAGACCCTCGCCGCGGAGGCCCACCGCC
TCGAAGGCCTCTTCTCCCAGGCTCGGGACGACGTCGCCACCGCCGAGCACGCCGCCGCCACCACCGAAGAAGAGGTGGCC
TCGCTCCGCGCCGAGGTCGAGCGCCTCCAGGCCCTCCTCGACCGCAAGAAGGCCGACCGTGAGGCGGACGAGCGCCAACG
CCAGGAGCTCACGGCCGAGGTGGAGACCGTTCGTCAGGCGAAGCTCAATCTCGAGAAGGAGGTCGACGCCCTGAAGGCTT
CCGCCGCTGCTACCACCGTGGAGGACAGGGAGGCTGCTCCGGACGCTGGGGCCCCGAAGGAAGAGGGAGTCGCCTGGCAG
GGGATGGCAGCGGGGGCGGCCGCTGGTGCTGCCATCACAGCTGCCGTCGTTCTGATCTACCTCCGCCTCAAGAGGTAA--
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>chr3A_1_TraesCS3A01G257000
TGTGAGATAGAGCTTCGCTCATCCATCCGGATCTACTCCATCGTGAGGGACCGTCGCCTCTTCGGAGAAGATCCATCTTG
GATTCAAGACCCCTAACGGAAAGACATCAAGACCTCCTCACGGAGAAGAACCAGTTATCCTTTGTATCGTCCCTTGTTGA
CTTTGGATCGTGTATCTCTATTTGTGTTTCGAGAATCTAGCACATGTGTGATCGTTTCTTGTTGATTTAAGTGATTTTCT
CGTGTTTCCCTCATGATTTCTCCTTATGTTCTTCGTGTTCATCGCGGGATCCGCTTCTTTTGTAGAAGATCGGCATCTAT
ACCTCAGAGGACCCGCTTCCATAAAATTCATACTTCACCAGAAACCATTTCTATCTGTCAAAAAAGTTCACTGTCCAAAG
CTGTTTTTTAGAGAACTTCCAAAGCTATTGTCACTAAAAAAACTGTATGCAAGTTCGAAAAAAAGAACTT-TATGTGCCG
TCGTAGTGGGCCGAAAATATTAGATGGAAAGGAGAAAGCGGCAGAGGAAAATGGCATTGGGCTGCTACTCCCTCGACGCG
AGCCCACAGGGCAAAGAACGTGCAATCATGATGCAGCGCACTACATTGACAGGGTCCGATGACGACGACGTCTTCCATTT
GCCCACTCGGCCCCGCGGCACCAACCTCCTCAACACGCAAGCGCCGTTGTAGACACTGCCACCCGGACCCACCATATCGG
CGTCGCCGTCACGCACGTTCCTCAGACTGGCCTAGAATAACTGACAGGTATGGCCACGATGCAACCCTAAGCAGAGGGAC
CCACGCGTCATGGACCCAAAGCGGAGCGGCGCATCCAGATATTTCCGCGCCCCCAACCCCGCACCACGCGCGATTCACAA
AGAGGAG------GAGAAAGAAGCCTCTCCTTTTCCAGCAGAGCCTTTCCCCATCT--------CTCCCCACAACCGCCG
CCGCCCATCGCGCACAGAAACCACGCTCCAAGACACCAAAACCCACCGATCCCCCATGGAGAACGGCGACGAAACCCTCG
TCTCCC------------CCACCGCT------------GAGGCCGAGAAGGCTGCGCCCAACGGAGGCGTCGCGGGCGAG
GAGGTCACCCTCGCCGACGCCGTCCACCCCGCCAAGTCCTACGCCGCCGTCGCCGCCAACGCCGAGATCGAGGACCTCCG
CGCCACCAAGCTCGACCTCGAGGAGCAGCTCGCCAACGCCAGCCAGGAGAACAAGACCCTCGCCGCGGAGGCCCACCGCC
TCGAAGGCCTCTTCTCCCAGGCTCGGGACGACGTCGCCACCGCCGAGCACGCCGCCGCCACCACCGAAGAAGAGGTGGCC
TCGCTCCGCGCCGAGGTCGAGCGCCTCCAGGCCCTCCTCGACCGCAAGAAGGCCGACCGTGAGGCGGACGAGCGCCAACG
CCAGGAGCTCACGGCCGAGGTGGAGACCGTTCGTCAGGCGAAGCTCAATCTCGAGAAGGAGGTCGACGCCCTGAAGGCTT
CCGCCGCTGCTACCACCGTGGAGGACAGGGAGGCTGCTCCGGACGCTGGGGCCCCGAAGGAAGAGGGAGTCGCCTGGCAG
GGGATGGCAGCGGGGGCGGCCGCTGGTGCTGCCATCACAGCTGCCGTCGTTCTGATCTACCTCCGCCTCAAGAGGTAATC
TGATGCTCTGGTGCGCAGGAAGTTTTGCTCTGCTGCTACAGCTTATGGAAGATTTGATGAGTTTGTCGTGGTGATGCTGT
TACTACCGAACCGAGAGTAATATGTCTTCTATCAGTTAGTTGCTTAATAGACTACAAAAACTTAGGTAATCTGGAGAATG
GTTATGTTTCATCCGTGTTTTTCCTTAATCATCTACGGGCTTTTGGTGGTGACGGTGAATGTGTAGACACTTTGTCAACC
GAGCAAGGCTGTATGCTTGGTTATACTATTATCGTTATGGTTGCTGGCTTACTGCTGCGGTTCTGCACTTTATTTCCGTC
TCTGATCTATCCATTCATGGTTATTAATGGTTTGCATCTCTAGATGATTGCTTGATGGTATGTAGACATCTCTATTCTTA
CCAATGCGTGAAATGAGTTCAACTGTTTGACATGTTACAACTTATTACTTCGTTTCCTGCCATTTGATGATTG-TTGGAT
TTAGTACTAGTGGAATCTTGTTAT-GTTCTAGTATTTGTTTCATCACCCAAATGTATGGAAATT----------------
---------------------------------TAGTTGGATGATTTAGCTTTGGTGCCGTGGTATGCGTCATGTTGTTC
CT--TGCACATAAGCAATGAAAATGCCTTGCATGCTGATTGCTGTTTAAACTGAAAGCTGCTTTTAACAGTACTTCCTTT
GCAAAATGACGATTTTATGGAATCTGGATTTCCCCTTCCGTGAATTCGTTGCTGGTGTGACCTGTGCTTTCTTGTTTACT
CATGATGCTTGTTAGAGCTTTGCTTCCATTTGGATTTTGTGGTTGTAGAATTCCTTCACCTTTATCCGTTTTATTGCTTG
CCTTGTGGATGTTGGTAGTTTAAATATTGGTGTTCACTTTTAATTTTAGACAGTGACATGTTTTGTTTACATGTTTTCCT
TGTGTGACCGGTATCTATGCATATGCCTTTCTTGGGCACGTGAATGGTCATGCCCTCTTGCGACTATGTGGTTGGCATTG
CTGCTTCATTT
>chr3D_426
TATTGTCATT----------------------------------------------------------------------
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------------------------------------AAAAAACTTTATGCAAGTTCGAAAAAAA--ACTT-TATGTGCCG
TCGTAGTGGGCCGAAAATATTAGATGGAAAGTAGAAAGCGGCACAGGAAAATGGCATTGGGCTGCTACTCCCGCGACGCG
AGCCCACAGGGCAA-GAACGTGCAATAATGATGCAGCGCACTACATTGACAGGGTCCGATGACGACGACGTCTTCCATTT
GCCCAATCGCCCCCG--GCACCAACCTCCTCAACACGCAAGCGCCGTTGTAGACACTGCCACCCGGACCCACCATATCGG
CGTCGCCGTCACGCACGTTCCTCAGACTGGCCGAGAATAACCGACAGGTATGGCCACGATGCAACCCCAAGCAAAGGGAC
CCACACGTCATGGAGCCATAGCGGAGCCGCGCATCCAGATATTTCCGGGCTCCCAACCCCGCACCACGCGCGATTCACAA
AGAGGAGGGGGAGGAGAAAGAAGCCTCTCCTTTTCCAGCAGAGCCTTTCCCCA------------------CAACCGCCG
CCGCCCATCGCGCACAGAAACCACGCTCCAAGACACCAAAACCCACCGATCCCCCATGGAGAACGGCGACGAAACCCTCG
TCTCCC------------CCGCCGCCGCCGCCTCCGCGGAGGTCGAGAAGGCTGCGCCCAACGGAGACGTCGCGGGCGAG
GAGGTCACCCTCGCCGACGCCGTCCACCCCGCCAAGTCCTACGCCGCCGTCGCCGCCAACGCCGAGATCGAGGACCTCCG
CGCCACCAAGCTCGACCTCGAGGAGCAGCTCGCCAACGCCAGCCAGGAGAACAAGACCCTCGCCGCGGAGGCCCACCGCC
TCGAGGGCCTCTTCTCCCAGGCCCGGGACGACGTCGCCACCGCCGAGCACGCCGCCGCCACCACCGAAGAAGAGGTGGCC
TCGCTCCGTGCCGAGGTCGAGCGCCTCCAGGCCCTCCTCGACCGCAAGAAGGCTGACCGTGAGGCCGACGAGCGCCAACG
CCAGGAGCTCACGGCCGAGGTGGAGACCGTTCGTCAGGCGAAGCTCAAGCTCGAGAAGGAGATCGACGCCCTGAAGGCTT
CCGCCGATGCTACCACCGTGAAGGACAGGGAGGCTGCTCCGGACGCTGGGGTCCCGAAGGAAGAAGGGGTCGCCTGGCAG
GGGATGGCAGCGGGGGCGGCCGCTGGTGCTGCCATCACGGCTGCCGTCGTTCTGATCTACCTCCGCCTCAAGAGGTAATC
TGGTGCTCTGGTGCGCAGGAAGTTTTGCTCTGCTGCTACAGCTTATGGAAGATTTGATGAGTTTGTCGTGGTGATGCTGT
TAGTACCGAACTGAGAGTAATATGTCTTCTATCAGTTAGTTGCTTAATAGACTACAAAAACTTAGGTAATCTGGAGAATG
GTTATGTTTCATCCGTGTTTTTCCTTAATCATCTACGGGCTTTTGGTGGTGACGATGAATGTGTACACACTTTGTCAACC
GAGCTAGGCTGTATGCTTGGTTATACTATTATCGTTATGGTTGCTGGCTTACTGCTACGGTTCTGCACTTTATTTCTGTC
TCTGATCTATCCATTGATGGTTATTAATGGTTTGCATCTCTAGATGATTGCTTGATGGTATGGAGACATCTCTATTCTTA
CCAATGCGTGAAATGAGTTCAACTGTTTGACATGTTACAACTTATTAGTGCGTTTCCTGCTATTTGATGATTG-TTGGAT
TTAGTACTAGTGGAATCTTGTTAT-GTTCTAGTATTTGTTTCATCACCCAAATGTATGGAAATT----------------
---------------------------------TAGTTGGATGATTTATATTTGGTGCCGTGGTATGCATGATGTTGTTC
CTTCTGCACATAAGCAATGAAAATGCCTTGCATGCTGATTGCTGTTTAAACTGAAAGCTACCTTTAACAGTACTTCCTTT
GCAAAATGATGATTTTATGGAATCTGGATTTCCCCTTCCGGAAATTCGTTGCTGGTGTGACCTGTGCTTTCTTGTTTACT
CATGATGCTTGTTAGAGCATTGCTTCCATTTGGATTTTGTGGTCGTAGAATTCCTTCACCTTTATCCGTTTTATTGCTTG
CCTTGTGGATGTTGGTAGTTTAAATATTGTTGTTCACTTTTAATTTTAGAC--TGACATGTTTTGATTACATGCTTTCCT
TGTGTGACCGGTATCTATGCATATGCCTTTCTTGGGCACGTGAATGGTCATGCCCTCCTGCGACTATGTGGTTGGCATTG
CTGCTTTATT-
>chr3B_426
TATTGTCAGT----------------------------------------------------------------------
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------------------------------------AAAAAACTTTATGCAAGTTCGTAAAAAACACTTTATATGTGCCG
TCGTAGTGGGCCGAAAATGTTAGATGGAAAGTAGAAAGCGGCACAGGAAAATGGCGTTGGGCTGCTACTCCCGCGACGCG
AGCCCACAGGGCAA-GAACGTGCAATAATGATGCAGCGCACTACATTGACAGGGTTCGATGACGACGACGTCTTCCATTT
GCCCACTCGCCCCCG--GCACCAACCTCCTCAACACGCATGCCCCGTTGTAGACACTGCCACCCGGACCCACCATATCGG
CGTCGCCGTCACGCACGTTCCTCAGACTGGCCGAGAATAACTGACAGGTATGGCCACGACGCAACCCCAAGCAAAGGGAC
CCACACGTCATGGAGCCAAAGCGGAGCCGCGCATCCAGATATTTCCGCGCCCCCGACCCCGCACCACGCGCGATTCACAA
AGAGGAGGGGGAGGAGAAAGAAGCCTCTCCTTTTCCAGCAGAGCCTTTCCCCATCCCTCCCTCCCTCCCCACAACCGCCG
CCGCCCATCACGCGCAGAAACCACGCTCCAAGACACCAAAACCCACCGATCCCCCATGGAGAACGGCGACGAAACCCTCG
TCTCTCCCCCCGCCGCCGCCACCGCT------------GAGGTCGAGAAGGCTGCGCCCAACGGAGGCGTTGAGGGCGAG
GAGGTCACCGTCGCCGACGCTGTCCACCCCGCCAAGTCCTACGCCGCCGTCGCCGCGAACGCCGAGATCGAGGACCTCCG
CGCCACCAAGCTCGACCTCGAGGAGCAGCTCGCCAATGCCAGCCAGGAGAACAAGACCCTCGCCGCGGAGGCCCACCGCC
TCGAAGGGCTCTTCTCTCAGGCCAGGGACGACGTCGCCACCGCCGAGCACGCCGCCGCCACCACCGAAGAAGAGGTGGCC
TCTCTCCGCGCCGAGGTCGAGCGCCTCCAGGCCCTCGTCGACCGCAAGAAGGCTGACCGTGAGGCGGACGAGCGCCAACG
TCAGGAGCTCACGGCCGAGGTGGAGACCGTTCGTCAGGCGAAGCTCAAGCTCGAGAAGGAGGTCGACGCCCTGAAGGCTT
CCGCCGCTGCTACCACCGTGGAGGACAGGGAGGCTGCTCCGGACGCTGGGGTCCCGAAGGAACAGGGGGTCGCCTGGCAG
GGGATGGCAGCGGGGGCGGCCGCTGGTGCTGCCATCACCGCTGCCGTCGTTCTGATCTACCTCCGCCTCAAGAGGTAATC
TGGTGCTCTGGTGCGCAGGAAGTTTTGCTCTGCTGCTACAGCTTATGGAAGATTTGATGAGTTTGTCGTGGTGATGCTGT
TAGTACCGAACTGAGAGTAATATGTCTTCTATCAGTTAGTTGCTTAATAGACCACAAAAAATTAGGTAATCTGCAGAATG
GTTATGTTTCATCGGTGTTTTTCCTTAATCATCTACGGGCTTTTGGTGGTGACGATGAATGTGTAGACACTTTGTCAACC
GGGCAAGGCTGTATGCTTGGTTATA---TTATCGTTATGGTTGCTGGCTTACTGCTACGGTTCTGCACTTTATTTCTGTC
TCTGGTCTATGCATTTATTGTTATTAATGGTTTGCATCTCTAGATGATTGCTTGATGGTATGGAGACATCTCTATTCTTA
CCAATGCGTGAAATGAGCTCAACTGTTTGACTTGTTACAACTTATTAATGCGTTTCCTGTTATTTGATGGTTGTTTGGAT
TTAGTACTAGTGGAATCTTGTTATGGTTCTAGTATTTGTTTCATCACCCAAATGTATGGAAATTAGTTGGATGATTTAGC
TTTATTTGTTTCATCACCCAAATGTATGGAAATTAGTTGGATGGTTTAGCTTTGGTGCCGTGGTATGCGTGATGTTGTTC
CTTCTGCACATAAGCAATGAAATTGCCTTGTATGCTGATTGCTGTTTAAACTGAAAGTTGCTTTTAACAGTACTGCCTTG
CATG-------------------CTGGATTTCCCCTTCGGAAATT-----------------------------------
---------------------------ATTTGGATTTTGTAGTCATAGAATTCCTTCATCTTTATCTGTTTTAATGCTTG
CCTTGTGGATGTTGGTAGTTTAAATATTGTTGTTCACTTTTAATTTCAGACAGCGACTTGTTTTGATTACATGTTTTCCT
TGTGTGATCGGTATTTATGCATATGCCTTTCTTGGGCACATGAATGGTCATGCCCTCTTCCGACTATGTGGTTGGCATTG
CTGCT------
>SNPs
-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S-------------------S---------------
-------------------------------S-----------S----------------------------S-------
--------------S-----------S-----------------------------------------------------
---------S-----SS---------------------------------------------------------------
--------------------------------S----------------------------------S-----S------
----S---------S------------S----------------------------------------------------
-------------------------------------------------------S------------------------
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----------------------S---------------------------------------------------------
-----------------------------------------------------S--------------------------
------------------------------------------------S-------------------------------
---------------------------------------------------S---------------S------------
--------------------------------------S-----------------------------------------
--S-----------------------------------------------------------------------------
--S--------S--------------------------------------------------------------------
------------------------------------------------------S-------------------------
--------------------------------------------------------S-------------------S---
---------------S----------------------------------------------S-----------------
-----------------------------------------------S-S----------S-------------------
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----------------------------------------------------------------------S---------
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---------S------------------------------SS--------------------------------------
------------------S------------------------S------------------------------------
-----------------------------S-----------------------------------S--------------
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------S---S
>forward_74
------------------------------------------------------CGCCTCTTCGGAGAAGATCC------
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>reverse_1489
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------------------------------------------------TCTCGAGAAGGAGGTCGACG------------
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>forward_338
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------------------------------------------------------------------------------AT
ACCTCAGAGGACCCGCTT--------------------------------------------------------------
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>reverse_1639
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--------------------------------------AGCTGCCGTCGTTCTGATC-----------------------
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>forward_343
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---TCAGAGGACCCGCTTCCATA---------------------------------------------------------
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>reverse_1977
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--------------------------------------------------------GCGGTTCTGCACTTTATTTCCG--
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