Multiple sequence alignment - TraesCS3A01G254800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G254800 chr3A 100.000 3703 0 0 769 4471 476665668 476661966 0.000000e+00 6839.0
1 TraesCS3A01G254800 chr3A 100.000 527 0 0 1 527 476666436 476665910 0.000000e+00 974.0
2 TraesCS3A01G254800 chr3D 94.612 2190 48 27 2291 4471 357161829 357159701 0.000000e+00 3326.0
3 TraesCS3A01G254800 chr3D 91.176 170 14 1 325 494 357162488 357162320 3.480000e-56 230.0
4 TraesCS3A01G254800 chr3D 97.297 37 1 0 488 524 357162295 357162259 3.730000e-06 63.9
5 TraesCS3A01G254800 chrUn 95.300 1000 35 9 2308 3301 368503670 368504663 0.000000e+00 1576.0
6 TraesCS3A01G254800 chrUn 94.356 567 22 7 2267 2828 441813540 441812979 0.000000e+00 861.0
7 TraesCS3A01G254800 chrUn 97.083 480 13 1 2823 3301 370904451 370904930 0.000000e+00 808.0
8 TraesCS3A01G254800 chrUn 93.415 410 20 3 1864 2270 441814062 441813657 6.400000e-168 601.0
9 TraesCS3A01G254800 chrUn 93.797 403 20 2 1864 2263 473517102 473517502 6.400000e-168 601.0
10 TraesCS3A01G254800 chrUn 96.585 205 6 1 3297 3501 362890398 362890601 5.540000e-89 339.0
11 TraesCS3A01G254800 chrUn 95.050 202 9 1 3991 4191 480113406 480113607 2.600000e-82 316.0
12 TraesCS3A01G254800 chrUn 91.099 191 9 4 4221 4403 480113604 480113794 7.420000e-63 252.0
13 TraesCS3A01G254800 chrUn 89.634 164 17 0 325 488 277744411 277744248 4.530000e-50 209.0
14 TraesCS3A01G254800 chrUn 94.958 119 5 1 770 888 277744000 277743883 7.640000e-43 185.0
15 TraesCS3A01G254800 chr3B 94.161 685 29 5 1179 1862 458424020 458423346 0.000000e+00 1033.0
16 TraesCS3A01G254800 chr3B 97.083 480 13 1 2823 3301 458422335 458421856 0.000000e+00 808.0
17 TraesCS3A01G254800 chr3B 93.976 415 11 6 770 1177 458424578 458424171 2.290000e-172 616.0
18 TraesCS3A01G254800 chr3B 89.024 164 18 0 325 488 458424989 458424826 2.110000e-48 204.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G254800 chr3A 476661966 476666436 4470 True 3906.500000 6839 100.000000 1 4471 2 chr3A.!!$R1 4470
1 TraesCS3A01G254800 chr3D 357159701 357162488 2787 True 1206.633333 3326 94.361667 325 4471 3 chr3D.!!$R1 4146
2 TraesCS3A01G254800 chrUn 368503670 368504663 993 False 1576.000000 1576 95.300000 2308 3301 1 chrUn.!!$F2 993
3 TraesCS3A01G254800 chrUn 441812979 441814062 1083 True 731.000000 861 93.885500 1864 2828 2 chrUn.!!$R2 964
4 TraesCS3A01G254800 chr3B 458421856 458424989 3133 True 665.250000 1033 93.561000 325 3301 4 chr3B.!!$R1 2976

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
163 164 0.034896 ATTTCTCGGTGCTTCGGTGT 59.965 50.0 0.01 0.0 0.00 4.16 F
263 264 0.112412 AGGATTTGGTTTCGGTGCCT 59.888 50.0 0.00 0.0 0.00 4.75 F
1248 1610 0.322456 TGAAGGGCCTCGTGGATTTG 60.322 55.0 6.46 0.0 34.57 2.32 F
1954 2320 0.814457 TCAGTTGTTTGCTTGCCGTT 59.186 45.0 0.00 0.0 0.00 4.44 F
2581 3070 0.320771 CCCCTTCCACTCGAACACTG 60.321 60.0 0.00 0.0 0.00 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1036 1248 0.311477 GAGTTCGGATAGGACGGAGC 59.689 60.000 0.00 0.0 0.00 4.70 R
1782 2145 1.338579 TGCGCATGGTTCAGTATCACA 60.339 47.619 5.66 0.0 0.00 3.58 R
2414 2902 0.254178 CTGCAACCTAGGCCATCTGT 59.746 55.000 9.30 0.0 0.00 3.41 R
3445 3963 1.191535 TAGCAGTTGTACGCCCAGAT 58.808 50.000 0.00 0.0 0.00 2.90 R
3496 4014 1.233019 TGCAAGAGACTGCTGCTTTC 58.767 50.000 0.00 0.0 43.07 2.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 4.498520 CGGGCGTGCATCGAGAGT 62.499 66.667 11.94 0.00 42.86 3.24
45 46 2.125512 GGGCGTGCATCGAGAGTT 60.126 61.111 11.94 0.00 42.86 3.01
46 47 2.456119 GGGCGTGCATCGAGAGTTG 61.456 63.158 11.94 0.00 42.86 3.16
53 54 4.427394 ATCGAGAGTTGCCGATGC 57.573 55.556 0.00 0.00 43.00 3.91
71 72 2.877043 GCAAATGCAGTAGGGATTGG 57.123 50.000 0.00 0.00 37.63 3.16
72 73 1.410153 GCAAATGCAGTAGGGATTGGG 59.590 52.381 0.00 0.00 37.63 4.12
73 74 2.949963 GCAAATGCAGTAGGGATTGGGA 60.950 50.000 0.00 0.00 37.63 4.37
74 75 2.954318 CAAATGCAGTAGGGATTGGGAG 59.046 50.000 0.00 0.00 37.63 4.30
75 76 2.196742 ATGCAGTAGGGATTGGGAGA 57.803 50.000 0.00 0.00 0.00 3.71
76 77 1.965414 TGCAGTAGGGATTGGGAGAA 58.035 50.000 0.00 0.00 0.00 2.87
77 78 1.839994 TGCAGTAGGGATTGGGAGAAG 59.160 52.381 0.00 0.00 0.00 2.85
78 79 1.141858 GCAGTAGGGATTGGGAGAAGG 59.858 57.143 0.00 0.00 0.00 3.46
79 80 2.764269 CAGTAGGGATTGGGAGAAGGA 58.236 52.381 0.00 0.00 0.00 3.36
80 81 3.321950 CAGTAGGGATTGGGAGAAGGAT 58.678 50.000 0.00 0.00 0.00 3.24
81 82 3.718956 CAGTAGGGATTGGGAGAAGGATT 59.281 47.826 0.00 0.00 0.00 3.01
82 83 4.166919 CAGTAGGGATTGGGAGAAGGATTT 59.833 45.833 0.00 0.00 0.00 2.17
83 84 4.796265 AGTAGGGATTGGGAGAAGGATTTT 59.204 41.667 0.00 0.00 0.00 1.82
84 85 5.976870 AGTAGGGATTGGGAGAAGGATTTTA 59.023 40.000 0.00 0.00 0.00 1.52
85 86 6.625700 AGTAGGGATTGGGAGAAGGATTTTAT 59.374 38.462 0.00 0.00 0.00 1.40
86 87 5.958321 AGGGATTGGGAGAAGGATTTTATC 58.042 41.667 0.00 0.00 0.00 1.75
87 88 4.762251 GGGATTGGGAGAAGGATTTTATCG 59.238 45.833 0.00 0.00 0.00 2.92
88 89 4.216472 GGATTGGGAGAAGGATTTTATCGC 59.784 45.833 0.00 0.00 0.00 4.58
89 90 4.503714 TTGGGAGAAGGATTTTATCGCT 57.496 40.909 1.40 0.00 0.00 4.93
90 91 4.073293 TGGGAGAAGGATTTTATCGCTC 57.927 45.455 0.00 0.00 0.00 5.03
91 92 3.711704 TGGGAGAAGGATTTTATCGCTCT 59.288 43.478 0.00 0.00 0.00 4.09
92 93 4.202264 TGGGAGAAGGATTTTATCGCTCTC 60.202 45.833 0.00 0.00 37.14 3.20
93 94 4.311606 GGAGAAGGATTTTATCGCTCTCC 58.688 47.826 14.67 14.67 44.02 3.71
94 95 3.983741 AGAAGGATTTTATCGCTCTCCG 58.016 45.455 0.00 0.00 38.61 4.63
95 96 2.821991 AGGATTTTATCGCTCTCCGG 57.178 50.000 0.00 0.00 37.59 5.14
96 97 1.344763 AGGATTTTATCGCTCTCCGGG 59.655 52.381 0.00 0.00 37.59 5.73
97 98 1.149148 GATTTTATCGCTCTCCGGGC 58.851 55.000 0.00 0.00 37.59 6.13
98 99 0.759346 ATTTTATCGCTCTCCGGGCT 59.241 50.000 0.00 0.00 37.59 5.19
99 100 0.179084 TTTTATCGCTCTCCGGGCTG 60.179 55.000 0.00 0.00 37.59 4.85
100 101 1.040893 TTTATCGCTCTCCGGGCTGA 61.041 55.000 0.00 0.00 37.59 4.26
101 102 1.456196 TTATCGCTCTCCGGGCTGAG 61.456 60.000 0.00 8.62 37.59 3.35
102 103 2.626255 TATCGCTCTCCGGGCTGAGT 62.626 60.000 16.98 5.06 37.59 3.41
103 104 2.626255 ATCGCTCTCCGGGCTGAGTA 62.626 60.000 16.98 9.38 37.59 2.59
104 105 2.840066 CGCTCTCCGGGCTGAGTAG 61.840 68.421 16.98 10.48 33.93 2.57
105 106 1.755008 GCTCTCCGGGCTGAGTAGT 60.755 63.158 16.98 0.00 33.93 2.73
106 107 1.324005 GCTCTCCGGGCTGAGTAGTT 61.324 60.000 16.98 0.00 33.93 2.24
107 108 0.457851 CTCTCCGGGCTGAGTAGTTG 59.542 60.000 0.00 0.00 33.93 3.16
108 109 0.970937 TCTCCGGGCTGAGTAGTTGG 60.971 60.000 0.00 0.00 33.93 3.77
109 110 1.961180 CTCCGGGCTGAGTAGTTGGG 61.961 65.000 0.00 0.00 0.00 4.12
110 111 2.125106 CGGGCTGAGTAGTTGGGC 60.125 66.667 0.00 0.00 0.00 5.36
111 112 2.272471 GGGCTGAGTAGTTGGGCC 59.728 66.667 0.00 0.00 41.80 5.80
112 113 2.125106 GGCTGAGTAGTTGGGCCG 60.125 66.667 0.00 0.00 33.30 6.13
113 114 2.663196 GCTGAGTAGTTGGGCCGT 59.337 61.111 0.00 0.00 0.00 5.68
114 115 1.741770 GCTGAGTAGTTGGGCCGTG 60.742 63.158 0.00 0.00 0.00 4.94
115 116 1.079127 CTGAGTAGTTGGGCCGTGG 60.079 63.158 0.00 0.00 0.00 4.94
116 117 2.267961 GAGTAGTTGGGCCGTGGG 59.732 66.667 0.00 0.00 0.00 4.61
131 132 2.290531 GTGGGCTACGTAGGTTTCTC 57.709 55.000 23.47 7.72 0.00 2.87
132 133 1.823610 GTGGGCTACGTAGGTTTCTCT 59.176 52.381 23.47 0.00 0.00 3.10
133 134 1.822990 TGGGCTACGTAGGTTTCTCTG 59.177 52.381 23.47 0.00 0.00 3.35
134 135 1.136500 GGGCTACGTAGGTTTCTCTGG 59.864 57.143 23.47 0.00 0.00 3.86
135 136 2.097825 GGCTACGTAGGTTTCTCTGGA 58.902 52.381 23.47 0.00 0.00 3.86
136 137 2.694109 GGCTACGTAGGTTTCTCTGGAT 59.306 50.000 23.47 0.00 0.00 3.41
137 138 3.132467 GGCTACGTAGGTTTCTCTGGATT 59.868 47.826 23.47 0.00 0.00 3.01
138 139 4.361420 GCTACGTAGGTTTCTCTGGATTC 58.639 47.826 23.47 0.00 0.00 2.52
139 140 3.505464 ACGTAGGTTTCTCTGGATTCG 57.495 47.619 0.00 0.00 0.00 3.34
140 141 3.087031 ACGTAGGTTTCTCTGGATTCGA 58.913 45.455 0.00 0.00 0.00 3.71
141 142 3.700038 ACGTAGGTTTCTCTGGATTCGAT 59.300 43.478 0.00 0.00 0.00 3.59
142 143 4.202030 ACGTAGGTTTCTCTGGATTCGATC 60.202 45.833 0.00 0.00 0.00 3.69
143 144 4.036971 CGTAGGTTTCTCTGGATTCGATCT 59.963 45.833 0.00 0.00 0.00 2.75
144 145 5.238868 CGTAGGTTTCTCTGGATTCGATCTA 59.761 44.000 0.00 0.00 0.00 1.98
145 146 6.072397 CGTAGGTTTCTCTGGATTCGATCTAT 60.072 42.308 0.00 0.00 0.00 1.98
146 147 6.739331 AGGTTTCTCTGGATTCGATCTATT 57.261 37.500 0.00 0.00 0.00 1.73
147 148 7.130681 AGGTTTCTCTGGATTCGATCTATTT 57.869 36.000 0.00 0.00 0.00 1.40
148 149 7.213678 AGGTTTCTCTGGATTCGATCTATTTC 58.786 38.462 0.00 0.00 0.00 2.17
149 150 7.070571 AGGTTTCTCTGGATTCGATCTATTTCT 59.929 37.037 0.00 0.00 0.00 2.52
150 151 7.383843 GGTTTCTCTGGATTCGATCTATTTCTC 59.616 40.741 0.00 0.00 0.00 2.87
151 152 6.247727 TCTCTGGATTCGATCTATTTCTCG 57.752 41.667 0.00 0.00 36.25 4.04
152 153 5.182190 TCTCTGGATTCGATCTATTTCTCGG 59.818 44.000 0.00 0.00 35.64 4.63
153 154 4.827835 TCTGGATTCGATCTATTTCTCGGT 59.172 41.667 0.00 0.00 35.64 4.69
154 155 4.871513 TGGATTCGATCTATTTCTCGGTG 58.128 43.478 0.00 0.00 35.64 4.94
155 156 3.675698 GGATTCGATCTATTTCTCGGTGC 59.324 47.826 0.00 0.00 35.64 5.01
156 157 4.551388 GATTCGATCTATTTCTCGGTGCT 58.449 43.478 0.00 0.00 35.64 4.40
157 158 4.386867 TTCGATCTATTTCTCGGTGCTT 57.613 40.909 0.00 0.00 35.64 3.91
158 159 3.966154 TCGATCTATTTCTCGGTGCTTC 58.034 45.455 0.00 0.00 35.64 3.86
159 160 2.721603 CGATCTATTTCTCGGTGCTTCG 59.278 50.000 0.00 0.00 0.00 3.79
160 161 2.579207 TCTATTTCTCGGTGCTTCGG 57.421 50.000 0.01 0.00 0.00 4.30
161 162 1.822990 TCTATTTCTCGGTGCTTCGGT 59.177 47.619 0.01 0.00 0.00 4.69
162 163 1.927174 CTATTTCTCGGTGCTTCGGTG 59.073 52.381 0.01 0.00 0.00 4.94
163 164 0.034896 ATTTCTCGGTGCTTCGGTGT 59.965 50.000 0.01 0.00 0.00 4.16
164 165 0.675083 TTTCTCGGTGCTTCGGTGTA 59.325 50.000 0.01 0.00 0.00 2.90
165 166 0.892755 TTCTCGGTGCTTCGGTGTAT 59.107 50.000 0.01 0.00 0.00 2.29
166 167 0.454600 TCTCGGTGCTTCGGTGTATC 59.545 55.000 0.01 0.00 0.00 2.24
167 168 0.527817 CTCGGTGCTTCGGTGTATCC 60.528 60.000 0.01 0.00 0.00 2.59
176 177 4.655527 GGTGTATCCGGATGCTCG 57.344 61.111 29.31 0.00 0.00 5.03
177 178 2.038690 GGTGTATCCGGATGCTCGA 58.961 57.895 29.31 10.25 0.00 4.04
178 179 0.603569 GGTGTATCCGGATGCTCGAT 59.396 55.000 29.31 5.38 0.00 3.59
179 180 1.816835 GGTGTATCCGGATGCTCGATA 59.183 52.381 29.31 9.52 0.00 2.92
180 181 2.415625 GGTGTATCCGGATGCTCGATAC 60.416 54.545 29.31 19.51 0.00 2.24
181 182 2.228103 GTGTATCCGGATGCTCGATACA 59.772 50.000 29.31 19.54 36.68 2.29
182 183 3.089284 TGTATCCGGATGCTCGATACAT 58.911 45.455 29.31 2.54 34.87 2.29
183 184 4.095932 GTGTATCCGGATGCTCGATACATA 59.904 45.833 29.31 6.69 39.77 2.29
184 185 4.887655 TGTATCCGGATGCTCGATACATAT 59.112 41.667 29.31 1.88 34.87 1.78
185 186 6.017357 GTGTATCCGGATGCTCGATACATATA 60.017 42.308 29.31 5.49 39.77 0.86
186 187 4.895224 TCCGGATGCTCGATACATATAC 57.105 45.455 0.00 0.00 0.00 1.47
187 188 3.630769 TCCGGATGCTCGATACATATACC 59.369 47.826 0.00 0.00 0.00 2.73
188 189 3.243434 CCGGATGCTCGATACATATACCC 60.243 52.174 0.00 0.00 0.00 3.69
189 190 3.548214 CGGATGCTCGATACATATACCCG 60.548 52.174 10.17 10.17 0.00 5.28
190 191 3.630769 GGATGCTCGATACATATACCCGA 59.369 47.826 1.38 0.00 0.00 5.14
191 192 4.097437 GGATGCTCGATACATATACCCGAA 59.903 45.833 1.38 0.00 0.00 4.30
192 193 5.221263 GGATGCTCGATACATATACCCGAAT 60.221 44.000 1.38 0.00 0.00 3.34
193 194 5.654603 TGCTCGATACATATACCCGAATT 57.345 39.130 0.00 0.00 0.00 2.17
194 195 6.762702 TGCTCGATACATATACCCGAATTA 57.237 37.500 0.00 0.00 0.00 1.40
195 196 7.160547 TGCTCGATACATATACCCGAATTAA 57.839 36.000 0.00 0.00 0.00 1.40
196 197 7.778083 TGCTCGATACATATACCCGAATTAAT 58.222 34.615 0.00 0.00 0.00 1.40
197 198 7.919091 TGCTCGATACATATACCCGAATTAATC 59.081 37.037 0.00 0.00 0.00 1.75
214 215 8.723777 GAATTAATCGAAGAAAGTTCGGTTTT 57.276 30.769 10.60 1.14 41.86 2.43
215 216 9.815936 GAATTAATCGAAGAAAGTTCGGTTTTA 57.184 29.630 10.60 1.60 41.86 1.52
216 217 9.603298 AATTAATCGAAGAAAGTTCGGTTTTAC 57.397 29.630 10.60 0.00 41.86 2.01
217 218 4.697300 TCGAAGAAAGTTCGGTTTTACG 57.303 40.909 7.26 0.00 41.78 3.18
218 219 3.490526 TCGAAGAAAGTTCGGTTTTACGG 59.509 43.478 7.26 0.00 41.78 4.02
219 220 3.490526 CGAAGAAAGTTCGGTTTTACGGA 59.509 43.478 0.00 0.00 38.19 4.69
220 221 4.151157 CGAAGAAAGTTCGGTTTTACGGAT 59.849 41.667 0.00 0.00 38.19 4.18
221 222 5.352643 AAGAAAGTTCGGTTTTACGGATG 57.647 39.130 0.00 0.00 0.00 3.51
222 223 3.749609 AGAAAGTTCGGTTTTACGGATGG 59.250 43.478 0.00 0.00 0.00 3.51
223 224 2.103537 AGTTCGGTTTTACGGATGGG 57.896 50.000 0.00 0.00 0.00 4.00
224 225 0.448990 GTTCGGTTTTACGGATGGGC 59.551 55.000 0.00 0.00 0.00 5.36
225 226 0.325602 TTCGGTTTTACGGATGGGCT 59.674 50.000 0.00 0.00 0.00 5.19
226 227 0.391927 TCGGTTTTACGGATGGGCTG 60.392 55.000 0.00 0.00 0.00 4.85
227 228 0.391927 CGGTTTTACGGATGGGCTGA 60.392 55.000 0.00 0.00 0.00 4.26
228 229 1.092348 GGTTTTACGGATGGGCTGAC 58.908 55.000 0.00 0.00 0.00 3.51
229 230 1.092348 GTTTTACGGATGGGCTGACC 58.908 55.000 0.00 0.00 40.81 4.02
234 235 4.986467 GGATGGGCTGACCGAATT 57.014 55.556 0.00 0.00 44.64 2.17
235 236 3.191182 GGATGGGCTGACCGAATTT 57.809 52.632 0.00 0.00 44.64 1.82
236 237 2.341846 GGATGGGCTGACCGAATTTA 57.658 50.000 0.00 0.00 44.64 1.40
237 238 2.863809 GGATGGGCTGACCGAATTTAT 58.136 47.619 0.00 0.00 44.64 1.40
238 239 2.554032 GGATGGGCTGACCGAATTTATG 59.446 50.000 0.00 0.00 44.64 1.90
239 240 3.476552 GATGGGCTGACCGAATTTATGA 58.523 45.455 0.00 0.00 44.64 2.15
240 241 2.639065 TGGGCTGACCGAATTTATGAC 58.361 47.619 0.00 0.00 44.64 3.06
241 242 1.947456 GGGCTGACCGAATTTATGACC 59.053 52.381 0.00 0.00 36.48 4.02
242 243 1.597663 GGCTGACCGAATTTATGACCG 59.402 52.381 0.00 0.00 0.00 4.79
243 244 2.546778 GCTGACCGAATTTATGACCGA 58.453 47.619 0.00 0.00 0.00 4.69
244 245 2.933906 GCTGACCGAATTTATGACCGAA 59.066 45.455 0.00 0.00 0.00 4.30
245 246 3.001330 GCTGACCGAATTTATGACCGAAG 59.999 47.826 0.00 0.00 0.00 3.79
260 261 2.611974 CGAAGGATTTGGTTTCGGTG 57.388 50.000 0.00 0.00 39.82 4.94
261 262 1.401018 CGAAGGATTTGGTTTCGGTGC 60.401 52.381 0.00 0.00 39.82 5.01
262 263 0.966179 AAGGATTTGGTTTCGGTGCC 59.034 50.000 0.00 0.00 0.00 5.01
263 264 0.112412 AGGATTTGGTTTCGGTGCCT 59.888 50.000 0.00 0.00 0.00 4.75
264 265 0.966179 GGATTTGGTTTCGGTGCCTT 59.034 50.000 0.00 0.00 0.00 4.35
265 266 1.067846 GGATTTGGTTTCGGTGCCTTC 60.068 52.381 0.00 0.00 0.00 3.46
266 267 0.596082 ATTTGGTTTCGGTGCCTTCG 59.404 50.000 0.00 0.00 0.00 3.79
267 268 0.464013 TTTGGTTTCGGTGCCTTCGA 60.464 50.000 0.00 0.00 34.62 3.71
268 269 0.882927 TTGGTTTCGGTGCCTTCGAG 60.883 55.000 0.00 0.00 37.93 4.04
269 270 1.301479 GGTTTCGGTGCCTTCGAGT 60.301 57.895 0.00 0.00 37.93 4.18
270 271 0.883370 GGTTTCGGTGCCTTCGAGTT 60.883 55.000 0.00 0.00 37.93 3.01
271 272 0.511653 GTTTCGGTGCCTTCGAGTTC 59.488 55.000 0.00 0.00 37.93 3.01
272 273 0.942410 TTTCGGTGCCTTCGAGTTCG 60.942 55.000 0.00 0.00 37.93 3.95
273 274 2.758770 TTCGGTGCCTTCGAGTTCGG 62.759 60.000 1.26 0.00 40.29 4.30
274 275 2.342648 GGTGCCTTCGAGTTCGGT 59.657 61.111 1.26 0.00 40.29 4.69
275 276 1.737008 GGTGCCTTCGAGTTCGGTC 60.737 63.158 1.26 0.00 40.29 4.79
276 277 1.289380 GTGCCTTCGAGTTCGGTCT 59.711 57.895 1.26 0.00 40.29 3.85
277 278 0.733223 GTGCCTTCGAGTTCGGTCTC 60.733 60.000 1.26 0.00 40.29 3.36
278 279 1.176619 TGCCTTCGAGTTCGGTCTCA 61.177 55.000 1.26 0.00 40.29 3.27
279 280 0.456995 GCCTTCGAGTTCGGTCTCAG 60.457 60.000 1.26 0.59 40.29 3.35
280 281 0.882474 CCTTCGAGTTCGGTCTCAGT 59.118 55.000 1.26 0.00 40.29 3.41
281 282 1.269998 CCTTCGAGTTCGGTCTCAGTT 59.730 52.381 1.26 0.00 40.29 3.16
282 283 2.486982 CCTTCGAGTTCGGTCTCAGTTA 59.513 50.000 1.26 0.00 40.29 2.24
283 284 3.426426 CCTTCGAGTTCGGTCTCAGTTAG 60.426 52.174 1.26 0.00 40.29 2.34
284 285 2.775890 TCGAGTTCGGTCTCAGTTAGT 58.224 47.619 1.26 0.00 40.29 2.24
285 286 3.144506 TCGAGTTCGGTCTCAGTTAGTT 58.855 45.455 1.26 0.00 40.29 2.24
286 287 3.188048 TCGAGTTCGGTCTCAGTTAGTTC 59.812 47.826 1.26 0.00 40.29 3.01
287 288 3.490399 GAGTTCGGTCTCAGTTAGTTCG 58.510 50.000 3.59 0.00 34.88 3.95
288 289 2.228343 AGTTCGGTCTCAGTTAGTTCGG 59.772 50.000 0.00 0.00 0.00 4.30
289 290 1.901591 TCGGTCTCAGTTAGTTCGGT 58.098 50.000 0.00 0.00 0.00 4.69
290 291 2.233271 TCGGTCTCAGTTAGTTCGGTT 58.767 47.619 0.00 0.00 0.00 4.44
291 292 2.624838 TCGGTCTCAGTTAGTTCGGTTT 59.375 45.455 0.00 0.00 0.00 3.27
292 293 2.729882 CGGTCTCAGTTAGTTCGGTTTG 59.270 50.000 0.00 0.00 0.00 2.93
293 294 3.064931 GGTCTCAGTTAGTTCGGTTTGG 58.935 50.000 0.00 0.00 0.00 3.28
294 295 3.493873 GGTCTCAGTTAGTTCGGTTTGGT 60.494 47.826 0.00 0.00 0.00 3.67
295 296 4.262164 GGTCTCAGTTAGTTCGGTTTGGTA 60.262 45.833 0.00 0.00 0.00 3.25
296 297 5.476614 GTCTCAGTTAGTTCGGTTTGGTAT 58.523 41.667 0.00 0.00 0.00 2.73
297 298 5.930569 GTCTCAGTTAGTTCGGTTTGGTATT 59.069 40.000 0.00 0.00 0.00 1.89
298 299 6.426025 GTCTCAGTTAGTTCGGTTTGGTATTT 59.574 38.462 0.00 0.00 0.00 1.40
299 300 6.993902 TCTCAGTTAGTTCGGTTTGGTATTTT 59.006 34.615 0.00 0.00 0.00 1.82
300 301 7.172019 TCTCAGTTAGTTCGGTTTGGTATTTTC 59.828 37.037 0.00 0.00 0.00 2.29
301 302 6.073657 TCAGTTAGTTCGGTTTGGTATTTTCG 60.074 38.462 0.00 0.00 0.00 3.46
302 303 5.759763 AGTTAGTTCGGTTTGGTATTTTCGT 59.240 36.000 0.00 0.00 0.00 3.85
303 304 4.737353 AGTTCGGTTTGGTATTTTCGTC 57.263 40.909 0.00 0.00 0.00 4.20
304 305 4.128643 AGTTCGGTTTGGTATTTTCGTCA 58.871 39.130 0.00 0.00 0.00 4.35
305 306 4.758165 AGTTCGGTTTGGTATTTTCGTCAT 59.242 37.500 0.00 0.00 0.00 3.06
306 307 4.932268 TCGGTTTGGTATTTTCGTCATC 57.068 40.909 0.00 0.00 0.00 2.92
307 308 3.368539 TCGGTTTGGTATTTTCGTCATCG 59.631 43.478 0.00 0.00 38.55 3.84
308 309 3.484557 CGGTTTGGTATTTTCGTCATCGG 60.485 47.826 0.00 0.00 37.69 4.18
309 310 3.437741 GGTTTGGTATTTTCGTCATCGGT 59.562 43.478 0.00 0.00 37.69 4.69
310 311 4.083164 GGTTTGGTATTTTCGTCATCGGTT 60.083 41.667 0.00 0.00 37.69 4.44
311 312 5.454520 GTTTGGTATTTTCGTCATCGGTTT 58.545 37.500 0.00 0.00 37.69 3.27
312 313 6.348376 GGTTTGGTATTTTCGTCATCGGTTTA 60.348 38.462 0.00 0.00 37.69 2.01
313 314 6.988622 TTGGTATTTTCGTCATCGGTTTAT 57.011 33.333 0.00 0.00 37.69 1.40
314 315 8.389603 GTTTGGTATTTTCGTCATCGGTTTATA 58.610 33.333 0.00 0.00 37.69 0.98
315 316 8.665643 TTGGTATTTTCGTCATCGGTTTATAT 57.334 30.769 0.00 0.00 37.69 0.86
316 317 8.078959 TGGTATTTTCGTCATCGGTTTATATG 57.921 34.615 0.00 0.00 37.69 1.78
317 318 7.013529 GGTATTTTCGTCATCGGTTTATATGC 58.986 38.462 0.00 0.00 37.69 3.14
318 319 5.412526 TTTTCGTCATCGGTTTATATGCC 57.587 39.130 0.00 0.00 37.69 4.40
319 320 3.034721 TCGTCATCGGTTTATATGCCC 57.965 47.619 0.00 0.00 37.69 5.36
320 321 2.365941 TCGTCATCGGTTTATATGCCCA 59.634 45.455 0.00 0.00 37.69 5.36
321 322 3.007506 TCGTCATCGGTTTATATGCCCAT 59.992 43.478 0.00 0.00 37.69 4.00
322 323 3.370978 CGTCATCGGTTTATATGCCCATC 59.629 47.826 0.00 0.00 0.00 3.51
323 324 3.689649 GTCATCGGTTTATATGCCCATCC 59.310 47.826 0.00 0.00 0.00 3.51
328 329 4.289934 TCGGTTTATATGCCCATCCCATTA 59.710 41.667 0.00 0.00 0.00 1.90
348 349 1.506262 GCATGGTTTTCATCCGCGT 59.494 52.632 4.92 0.00 32.92 6.01
362 363 1.135527 TCCGCGTGGATAGAAACGAAT 59.864 47.619 15.21 0.00 42.32 3.34
363 364 2.358582 TCCGCGTGGATAGAAACGAATA 59.641 45.455 15.21 0.00 42.32 1.75
368 369 4.206609 GCGTGGATAGAAACGAATACAGAC 59.793 45.833 0.00 0.00 42.32 3.51
372 373 5.301045 TGGATAGAAACGAATACAGACGGAT 59.699 40.000 0.00 0.00 0.00 4.18
491 523 1.037493 ATCCGTCCGATCGATTTCCA 58.963 50.000 18.66 0.00 0.00 3.53
805 1011 1.153823 CGCCTCGGAGTTGTGGTAG 60.154 63.158 4.02 0.00 0.00 3.18
831 1037 7.435488 GCTTAGTATTAATGCGACTTCTCAGAA 59.565 37.037 0.00 0.00 0.00 3.02
871 1077 5.358442 TCTTACTGCTGGCAAACTACAAAAA 59.642 36.000 0.00 0.00 0.00 1.94
876 1082 4.040217 TGCTGGCAAACTACAAAAATCCAT 59.960 37.500 0.00 0.00 0.00 3.41
976 1188 4.364415 TTTAACTTGCGTTTGTTGCTCT 57.636 36.364 0.00 0.00 34.59 4.09
991 1203 2.893637 TGCTCTAAGGACGCTTCAATC 58.106 47.619 0.00 0.00 0.00 2.67
1033 1245 2.202932 AGGCCGCTACGCTGATTG 60.203 61.111 0.00 0.00 0.00 2.67
1036 1248 3.009140 CCGCTACGCTGATTGCTG 58.991 61.111 0.00 0.00 40.11 4.41
1059 1271 1.687123 CCGTCCTATCCGAACTCCATT 59.313 52.381 0.00 0.00 0.00 3.16
1135 1348 5.104374 CCTGGTATGTGCAATTTCATCAAC 58.896 41.667 0.00 0.00 0.00 3.18
1136 1349 5.070770 TGGTATGTGCAATTTCATCAACC 57.929 39.130 0.00 0.00 0.00 3.77
1137 1350 4.771577 TGGTATGTGCAATTTCATCAACCT 59.228 37.500 7.91 0.00 0.00 3.50
1155 1368 4.236527 ACCTAAGGTATTTGCCTTCAGG 57.763 45.455 3.02 10.83 45.03 3.86
1177 1390 5.877012 AGGCATTACTGTACTTCATCAACTG 59.123 40.000 0.00 0.00 0.00 3.16
1201 1563 5.394883 GGATTGACCTTGCATTCATCATGTT 60.395 40.000 0.00 0.00 33.74 2.71
1202 1564 5.471556 TTGACCTTGCATTCATCATGTTT 57.528 34.783 0.00 0.00 34.98 2.83
1248 1610 0.322456 TGAAGGGCCTCGTGGATTTG 60.322 55.000 6.46 0.00 34.57 2.32
1260 1622 0.881118 TGGATTTGTCTTGCTTCGCC 59.119 50.000 0.00 0.00 0.00 5.54
1300 1662 5.183904 CCATTGGAGTGGTTAAAAGAGAAGG 59.816 44.000 0.00 0.00 34.46 3.46
1304 1666 5.826208 TGGAGTGGTTAAAAGAGAAGGTTTC 59.174 40.000 0.00 0.00 0.00 2.78
1335 1697 3.066064 ACAAAAACACGAGCATTGCACTA 59.934 39.130 11.91 0.00 0.00 2.74
1346 1708 5.473039 GAGCATTGCACTATGTTCCTTTTT 58.527 37.500 11.91 0.00 31.77 1.94
1472 1835 7.892241 TGAGAGTACCACCTATGTAGTTAGTTT 59.108 37.037 0.00 0.00 0.00 2.66
1564 1927 4.598022 TCCCAATATCAACATTGCAGTGA 58.402 39.130 16.98 5.11 35.06 3.41
1598 1961 9.639601 ATGCTGATATGCTATTTGAATTGAATG 57.360 29.630 0.00 0.00 0.00 2.67
1639 2002 7.553881 TTGAGGCTATAATGCTTTAACTGTC 57.446 36.000 0.00 0.00 0.00 3.51
1656 2019 1.202687 TGTCTTGGCTCTTGGTCAGTG 60.203 52.381 0.00 0.00 0.00 3.66
1682 2045 6.061231 AGTTTAACAAGTCAGCTGCTTTAC 57.939 37.500 17.29 7.75 0.00 2.01
1703 2066 3.668191 ACGACAATTGCAAATTAACAGCG 59.332 39.130 1.71 2.47 0.00 5.18
1736 2099 6.463890 CGATCTGAAATGTTCAATTCTCAACG 59.536 38.462 2.95 0.00 39.58 4.10
1737 2100 6.000891 TCTGAAATGTTCAATTCTCAACGG 57.999 37.500 2.95 0.00 39.58 4.44
1802 2165 1.338579 TGTGATACTGAACCATGCGCA 60.339 47.619 14.96 14.96 0.00 6.09
1851 2214 5.130350 GCTTTGCACCTAATTCTGGGTATA 58.870 41.667 0.00 0.00 33.23 1.47
1931 2297 8.954350 CCCATCTTCTTGTTTATATGGATGATC 58.046 37.037 0.00 0.00 36.76 2.92
1954 2320 0.814457 TCAGTTGTTTGCTTGCCGTT 59.186 45.000 0.00 0.00 0.00 4.44
1961 2327 2.116366 GTTTGCTTGCCGTTTGTACTG 58.884 47.619 0.00 0.00 0.00 2.74
2047 2413 7.179269 AGGTAAGCCTATTCAACCAATGTTTA 58.821 34.615 0.00 0.00 44.90 2.01
2106 2472 4.576463 AGCTGGAAGGTTAGATTTAATGCG 59.424 41.667 0.00 0.00 46.63 4.73
2108 2474 4.265893 TGGAAGGTTAGATTTAATGCGCA 58.734 39.130 14.96 14.96 0.00 6.09
2142 2508 5.689383 TTTTGCCACACTGATAGTTCTTC 57.311 39.130 0.00 0.00 0.00 2.87
2186 2552 7.013655 CCAAAGTGATCTGTAAATATTCCTGGG 59.986 40.741 0.00 0.00 0.00 4.45
2188 2554 5.073691 AGTGATCTGTAAATATTCCTGGGGG 59.926 44.000 0.00 0.00 0.00 5.40
2190 2556 5.073144 TGATCTGTAAATATTCCTGGGGGAC 59.927 44.000 0.00 0.00 42.05 4.46
2205 2571 2.478292 GGGGACAAGGAAGTCAGGATA 58.522 52.381 0.00 0.00 40.29 2.59
2243 2609 3.752222 GCTTCAGCTAGCATGCATTCTAT 59.248 43.478 21.98 0.00 40.89 1.98
2244 2610 4.215827 GCTTCAGCTAGCATGCATTCTATT 59.784 41.667 21.98 0.00 40.89 1.73
2246 2612 6.072838 GCTTCAGCTAGCATGCATTCTATTTA 60.073 38.462 21.98 0.00 40.89 1.40
2414 2902 6.922957 GTCCATTGCTTTTTGTTCATCTACAA 59.077 34.615 0.00 0.00 36.30 2.41
2415 2903 6.922957 TCCATTGCTTTTTGTTCATCTACAAC 59.077 34.615 0.00 0.00 37.72 3.32
2416 2904 6.700960 CCATTGCTTTTTGTTCATCTACAACA 59.299 34.615 0.00 0.00 37.72 3.33
2476 2964 5.955355 ACTTCTATTCTGTTGCTCTAGGTCT 59.045 40.000 0.00 0.00 0.00 3.85
2493 2981 8.529424 TCTAGGTCTCGGATGTTTCTAAATTA 57.471 34.615 0.00 0.00 0.00 1.40
2577 3066 1.671379 GTGCCCCTTCCACTCGAAC 60.671 63.158 0.00 0.00 0.00 3.95
2578 3067 2.144078 TGCCCCTTCCACTCGAACA 61.144 57.895 0.00 0.00 0.00 3.18
2580 3069 2.058675 CCCCTTCCACTCGAACACT 58.941 57.895 0.00 0.00 0.00 3.55
2581 3070 0.320771 CCCCTTCCACTCGAACACTG 60.321 60.000 0.00 0.00 0.00 3.66
2583 3072 0.320771 CCTTCCACTCGAACACTGGG 60.321 60.000 0.00 0.00 0.00 4.45
2584 3073 0.679505 CTTCCACTCGAACACTGGGA 59.320 55.000 0.00 0.00 0.00 4.37
2585 3074 1.070134 CTTCCACTCGAACACTGGGAA 59.930 52.381 0.00 0.00 33.67 3.97
2867 3385 8.773033 AAACCTGAGCCAAGAATTTCATATAT 57.227 30.769 0.00 0.00 0.00 0.86
2868 3386 9.866655 AAACCTGAGCCAAGAATTTCATATATA 57.133 29.630 0.00 0.00 0.00 0.86
2869 3387 9.866655 AACCTGAGCCAAGAATTTCATATATAA 57.133 29.630 0.00 0.00 0.00 0.98
2870 3388 9.866655 ACCTGAGCCAAGAATTTCATATATAAA 57.133 29.630 0.00 0.00 0.00 1.40
2873 3391 9.866655 TGAGCCAAGAATTTCATATATAAACCT 57.133 29.630 0.00 0.00 0.00 3.50
2875 3393 9.866655 AGCCAAGAATTTCATATATAAACCTGA 57.133 29.630 0.00 0.00 0.00 3.86
2879 3397 9.866655 AAGAATTTCATATATAAACCTGAGCCA 57.133 29.630 0.00 0.00 0.00 4.75
2880 3398 9.866655 AGAATTTCATATATAAACCTGAGCCAA 57.133 29.630 0.00 0.00 0.00 4.52
2882 3400 9.866655 AATTTCATATATAAACCTGAGCCAAGA 57.133 29.630 0.00 0.00 0.00 3.02
2883 3401 9.866655 ATTTCATATATAAACCTGAGCCAAGAA 57.133 29.630 0.00 0.00 0.00 2.52
2884 3402 9.866655 TTTCATATATAAACCTGAGCCAAGAAT 57.133 29.630 0.00 0.00 0.00 2.40
2885 3403 9.866655 TTCATATATAAACCTGAGCCAAGAATT 57.133 29.630 0.00 0.00 0.00 2.17
2886 3404 9.866655 TCATATATAAACCTGAGCCAAGAATTT 57.133 29.630 0.00 0.00 0.00 1.82
2888 3406 9.866655 ATATATAAACCTGAGCCAAGAATTTCA 57.133 29.630 0.00 0.00 0.00 2.69
2889 3407 8.773033 ATATAAACCTGAGCCAAGAATTTCAT 57.227 30.769 0.00 0.00 0.00 2.57
2890 3408 9.866655 ATATAAACCTGAGCCAAGAATTTCATA 57.133 29.630 0.00 0.00 0.00 2.15
2891 3409 8.773033 ATAAACCTGAGCCAAGAATTTCATAT 57.227 30.769 0.00 0.00 0.00 1.78
2892 3410 9.866655 ATAAACCTGAGCCAAGAATTTCATATA 57.133 29.630 0.00 0.00 0.00 0.86
3023 3541 1.203758 CTTGCATGAAGCCAGCATTGA 59.796 47.619 0.00 0.00 44.83 2.57
3301 3819 7.282332 GCATAGAAATGGCTTTCCTTAGAAT 57.718 36.000 6.01 0.00 41.46 2.40
3351 3869 6.536224 CCTGAAAATCCAAACTATTTCATGGC 59.464 38.462 0.00 0.00 40.03 4.40
3445 3963 5.009911 CCAATTGTGTCTCCAGATTGTCAAA 59.990 40.000 4.43 0.00 0.00 2.69
3496 4014 1.399714 TAGGTGGCTCACAGGATACG 58.600 55.000 7.49 0.00 46.39 3.06
3527 4045 4.496895 CAGTCTCTTGCAACAAAGAAAACG 59.503 41.667 0.00 0.00 35.79 3.60
3564 4082 0.321671 ACCGCAGAACAGTATGCACT 59.678 50.000 10.45 0.00 42.30 4.40
3567 4085 2.068519 CGCAGAACAGTATGCACTTCA 58.931 47.619 10.45 0.00 42.30 3.02
3624 4142 2.030412 AGTTGTGCCATCACGCGA 59.970 55.556 15.93 0.00 46.01 5.87
3628 4146 2.738521 GTGCCATCACGCGACACT 60.739 61.111 15.93 0.00 32.98 3.55
3635 4153 1.649171 CATCACGCGACACTACTTCAC 59.351 52.381 15.93 0.00 0.00 3.18
3650 4168 8.686334 ACACTACTTCACATTTGTTGAGAAATT 58.314 29.630 0.00 0.00 35.00 1.82
3712 4230 6.052405 TCATTTTGGAAAATATGCAAGCCT 57.948 33.333 0.00 0.00 40.70 4.58
3821 4339 4.262164 CCATCAGTTGGGAAGTTTCCTTTG 60.262 45.833 10.53 0.00 46.72 2.77
3869 4387 1.742761 AGCAACTGGATGTTCGGATG 58.257 50.000 0.00 0.00 36.63 3.51
3870 4388 0.734889 GCAACTGGATGTTCGGATGG 59.265 55.000 0.00 0.00 36.63 3.51
3871 4389 1.678728 GCAACTGGATGTTCGGATGGA 60.679 52.381 0.00 0.00 36.63 3.41
3872 4390 2.710377 CAACTGGATGTTCGGATGGAA 58.290 47.619 0.00 0.00 36.63 3.53
3942 4460 5.931146 TGCTTGACATGTTTTTGTTGACTTT 59.069 32.000 0.00 0.00 0.00 2.66
3984 4502 7.716799 TTAAATGGCAGAAGGATAATGTGTT 57.283 32.000 0.00 0.00 0.00 3.32
4101 4619 8.225777 GCTTCTGCCTTAAATGAAAATTCTTTG 58.774 33.333 0.00 0.00 0.00 2.77
4422 4948 4.689071 TCGCCGTATACATGTGAAAGAAT 58.311 39.130 9.11 0.00 0.00 2.40
4462 4988 6.339587 TGGAGACCATGTCCAAATTTAAAC 57.660 37.500 1.14 0.00 41.32 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 3.989698 AACTCTCGATGCACGCCCG 62.990 63.158 0.00 0.00 42.26 6.13
28 29 2.125512 AACTCTCGATGCACGCCC 60.126 61.111 0.00 0.00 42.26 6.13
29 30 3.084579 CAACTCTCGATGCACGCC 58.915 61.111 0.00 0.00 42.26 5.68
30 31 2.397252 GCAACTCTCGATGCACGC 59.603 61.111 3.89 0.00 42.12 5.34
31 32 2.792290 CGGCAACTCTCGATGCACG 61.792 63.158 10.63 7.83 44.32 5.34
32 33 0.807667 ATCGGCAACTCTCGATGCAC 60.808 55.000 10.63 0.26 43.37 4.57
33 34 1.517361 ATCGGCAACTCTCGATGCA 59.483 52.632 10.63 0.00 43.37 3.96
34 35 4.427394 ATCGGCAACTCTCGATGC 57.573 55.556 0.00 0.00 43.37 3.91
36 37 4.427394 GCATCGGCAACTCTCGAT 57.573 55.556 0.00 0.00 45.51 3.59
52 53 1.410153 CCCAATCCCTACTGCATTTGC 59.590 52.381 0.00 0.00 42.50 3.68
53 54 2.954318 CTCCCAATCCCTACTGCATTTG 59.046 50.000 0.00 0.00 0.00 2.32
54 55 2.852449 TCTCCCAATCCCTACTGCATTT 59.148 45.455 0.00 0.00 0.00 2.32
55 56 2.492025 TCTCCCAATCCCTACTGCATT 58.508 47.619 0.00 0.00 0.00 3.56
56 57 2.196742 TCTCCCAATCCCTACTGCAT 57.803 50.000 0.00 0.00 0.00 3.96
57 58 1.839994 CTTCTCCCAATCCCTACTGCA 59.160 52.381 0.00 0.00 0.00 4.41
58 59 1.141858 CCTTCTCCCAATCCCTACTGC 59.858 57.143 0.00 0.00 0.00 4.40
59 60 2.764269 TCCTTCTCCCAATCCCTACTG 58.236 52.381 0.00 0.00 0.00 2.74
60 61 3.734344 ATCCTTCTCCCAATCCCTACT 57.266 47.619 0.00 0.00 0.00 2.57
61 62 4.797912 AAATCCTTCTCCCAATCCCTAC 57.202 45.455 0.00 0.00 0.00 3.18
62 63 6.239887 CGATAAAATCCTTCTCCCAATCCCTA 60.240 42.308 0.00 0.00 0.00 3.53
63 64 5.456763 CGATAAAATCCTTCTCCCAATCCCT 60.457 44.000 0.00 0.00 0.00 4.20
64 65 4.762251 CGATAAAATCCTTCTCCCAATCCC 59.238 45.833 0.00 0.00 0.00 3.85
65 66 4.216472 GCGATAAAATCCTTCTCCCAATCC 59.784 45.833 0.00 0.00 0.00 3.01
66 67 5.066593 AGCGATAAAATCCTTCTCCCAATC 58.933 41.667 0.00 0.00 0.00 2.67
67 68 5.053978 AGCGATAAAATCCTTCTCCCAAT 57.946 39.130 0.00 0.00 0.00 3.16
68 69 4.164221 AGAGCGATAAAATCCTTCTCCCAA 59.836 41.667 0.00 0.00 0.00 4.12
69 70 3.711704 AGAGCGATAAAATCCTTCTCCCA 59.288 43.478 0.00 0.00 0.00 4.37
70 71 4.311606 GAGAGCGATAAAATCCTTCTCCC 58.688 47.826 0.00 0.00 33.00 4.30
71 72 4.311606 GGAGAGCGATAAAATCCTTCTCC 58.688 47.826 13.95 13.95 42.80 3.71
72 73 3.984633 CGGAGAGCGATAAAATCCTTCTC 59.015 47.826 0.00 6.71 35.86 2.87
73 74 3.243907 CCGGAGAGCGATAAAATCCTTCT 60.244 47.826 0.00 0.00 0.00 2.85
74 75 3.060602 CCGGAGAGCGATAAAATCCTTC 58.939 50.000 0.00 0.00 0.00 3.46
75 76 2.224305 CCCGGAGAGCGATAAAATCCTT 60.224 50.000 0.73 0.00 0.00 3.36
76 77 1.344763 CCCGGAGAGCGATAAAATCCT 59.655 52.381 0.73 0.00 0.00 3.24
77 78 1.797025 CCCGGAGAGCGATAAAATCC 58.203 55.000 0.73 0.00 0.00 3.01
78 79 1.149148 GCCCGGAGAGCGATAAAATC 58.851 55.000 0.73 0.00 0.00 2.17
79 80 0.759346 AGCCCGGAGAGCGATAAAAT 59.241 50.000 0.73 0.00 35.24 1.82
80 81 0.179084 CAGCCCGGAGAGCGATAAAA 60.179 55.000 0.73 0.00 35.24 1.52
81 82 1.040893 TCAGCCCGGAGAGCGATAAA 61.041 55.000 0.73 0.00 35.24 1.40
82 83 1.455032 TCAGCCCGGAGAGCGATAA 60.455 57.895 0.73 0.00 35.24 1.75
83 84 1.899054 CTCAGCCCGGAGAGCGATA 60.899 63.158 0.73 0.00 35.24 2.92
84 85 2.626255 TACTCAGCCCGGAGAGCGAT 62.626 60.000 0.73 0.00 35.24 4.58
85 86 3.339738 TACTCAGCCCGGAGAGCGA 62.340 63.158 0.73 0.00 35.24 4.93
86 87 2.829003 TACTCAGCCCGGAGAGCG 60.829 66.667 0.73 0.00 35.24 5.03
87 88 1.324005 AACTACTCAGCCCGGAGAGC 61.324 60.000 0.73 0.00 38.30 4.09
88 89 0.457851 CAACTACTCAGCCCGGAGAG 59.542 60.000 0.73 10.13 38.30 3.20
89 90 0.970937 CCAACTACTCAGCCCGGAGA 60.971 60.000 0.73 0.00 38.30 3.71
90 91 1.517832 CCAACTACTCAGCCCGGAG 59.482 63.158 0.73 0.00 40.79 4.63
91 92 1.987855 CCCAACTACTCAGCCCGGA 60.988 63.158 0.73 0.00 0.00 5.14
92 93 2.584608 CCCAACTACTCAGCCCGG 59.415 66.667 0.00 0.00 0.00 5.73
93 94 2.125106 GCCCAACTACTCAGCCCG 60.125 66.667 0.00 0.00 0.00 6.13
94 95 2.272471 GGCCCAACTACTCAGCCC 59.728 66.667 0.00 0.00 37.66 5.19
95 96 2.125106 CGGCCCAACTACTCAGCC 60.125 66.667 0.00 0.00 40.33 4.85
96 97 1.741770 CACGGCCCAACTACTCAGC 60.742 63.158 0.00 0.00 0.00 4.26
97 98 1.079127 CCACGGCCCAACTACTCAG 60.079 63.158 0.00 0.00 0.00 3.35
98 99 2.589157 CCCACGGCCCAACTACTCA 61.589 63.158 0.00 0.00 0.00 3.41
99 100 2.267961 CCCACGGCCCAACTACTC 59.732 66.667 0.00 0.00 0.00 2.59
100 101 4.029809 GCCCACGGCCCAACTACT 62.030 66.667 0.00 0.00 44.06 2.57
112 113 1.823610 AGAGAAACCTACGTAGCCCAC 59.176 52.381 17.41 8.25 0.00 4.61
113 114 1.822990 CAGAGAAACCTACGTAGCCCA 59.177 52.381 17.41 0.00 0.00 5.36
114 115 1.136500 CCAGAGAAACCTACGTAGCCC 59.864 57.143 17.41 5.50 0.00 5.19
115 116 2.097825 TCCAGAGAAACCTACGTAGCC 58.902 52.381 17.41 5.84 0.00 3.93
116 117 4.361420 GAATCCAGAGAAACCTACGTAGC 58.639 47.826 17.41 3.46 0.00 3.58
117 118 4.334759 TCGAATCCAGAGAAACCTACGTAG 59.665 45.833 15.92 15.92 0.00 3.51
118 119 4.264253 TCGAATCCAGAGAAACCTACGTA 58.736 43.478 0.00 0.00 0.00 3.57
119 120 3.087031 TCGAATCCAGAGAAACCTACGT 58.913 45.455 0.00 0.00 0.00 3.57
120 121 3.777465 TCGAATCCAGAGAAACCTACG 57.223 47.619 0.00 0.00 0.00 3.51
121 122 5.523438 AGATCGAATCCAGAGAAACCTAC 57.477 43.478 0.00 0.00 0.00 3.18
122 123 7.841282 AATAGATCGAATCCAGAGAAACCTA 57.159 36.000 0.00 0.00 0.00 3.08
123 124 6.739331 AATAGATCGAATCCAGAGAAACCT 57.261 37.500 0.00 0.00 0.00 3.50
124 125 7.213678 AGAAATAGATCGAATCCAGAGAAACC 58.786 38.462 0.00 0.00 0.00 3.27
125 126 7.114247 CGAGAAATAGATCGAATCCAGAGAAAC 59.886 40.741 0.00 0.00 41.40 2.78
126 127 7.142021 CGAGAAATAGATCGAATCCAGAGAAA 58.858 38.462 0.00 0.00 41.40 2.52
127 128 6.294231 CCGAGAAATAGATCGAATCCAGAGAA 60.294 42.308 0.00 0.00 41.40 2.87
128 129 5.182190 CCGAGAAATAGATCGAATCCAGAGA 59.818 44.000 0.00 0.00 41.40 3.10
129 130 5.048364 ACCGAGAAATAGATCGAATCCAGAG 60.048 44.000 0.00 0.00 41.40 3.35
130 131 4.827835 ACCGAGAAATAGATCGAATCCAGA 59.172 41.667 0.00 0.00 41.40 3.86
131 132 4.920340 CACCGAGAAATAGATCGAATCCAG 59.080 45.833 0.00 0.00 41.40 3.86
132 133 4.796290 GCACCGAGAAATAGATCGAATCCA 60.796 45.833 0.00 0.00 41.40 3.41
133 134 3.675698 GCACCGAGAAATAGATCGAATCC 59.324 47.826 0.00 0.00 41.40 3.01
134 135 4.551388 AGCACCGAGAAATAGATCGAATC 58.449 43.478 0.00 0.00 41.40 2.52
135 136 4.592485 AGCACCGAGAAATAGATCGAAT 57.408 40.909 0.00 0.00 41.40 3.34
136 137 4.360563 GAAGCACCGAGAAATAGATCGAA 58.639 43.478 0.00 0.00 41.40 3.71
137 138 3.548214 CGAAGCACCGAGAAATAGATCGA 60.548 47.826 0.00 0.00 41.40 3.59
138 139 2.721603 CGAAGCACCGAGAAATAGATCG 59.278 50.000 0.00 0.00 38.65 3.69
139 140 3.053455 CCGAAGCACCGAGAAATAGATC 58.947 50.000 0.00 0.00 0.00 2.75
140 141 2.431057 ACCGAAGCACCGAGAAATAGAT 59.569 45.455 0.00 0.00 0.00 1.98
141 142 1.822990 ACCGAAGCACCGAGAAATAGA 59.177 47.619 0.00 0.00 0.00 1.98
142 143 1.927174 CACCGAAGCACCGAGAAATAG 59.073 52.381 0.00 0.00 0.00 1.73
143 144 1.274167 ACACCGAAGCACCGAGAAATA 59.726 47.619 0.00 0.00 0.00 1.40
144 145 0.034896 ACACCGAAGCACCGAGAAAT 59.965 50.000 0.00 0.00 0.00 2.17
145 146 0.675083 TACACCGAAGCACCGAGAAA 59.325 50.000 0.00 0.00 0.00 2.52
146 147 0.892755 ATACACCGAAGCACCGAGAA 59.107 50.000 0.00 0.00 0.00 2.87
147 148 0.454600 GATACACCGAAGCACCGAGA 59.545 55.000 0.00 0.00 0.00 4.04
148 149 0.527817 GGATACACCGAAGCACCGAG 60.528 60.000 0.00 0.00 0.00 4.63
149 150 1.514087 GGATACACCGAAGCACCGA 59.486 57.895 0.00 0.00 0.00 4.69
150 151 4.104143 GGATACACCGAAGCACCG 57.896 61.111 0.00 0.00 0.00 4.94
159 160 0.603569 ATCGAGCATCCGGATACACC 59.396 55.000 18.63 6.81 0.00 4.16
160 161 2.228103 TGTATCGAGCATCCGGATACAC 59.772 50.000 18.63 9.52 34.87 2.90
161 162 2.510613 TGTATCGAGCATCCGGATACA 58.489 47.619 18.63 13.24 36.68 2.29
162 163 3.784701 ATGTATCGAGCATCCGGATAC 57.215 47.619 18.63 12.37 0.00 2.24
163 164 5.472478 GGTATATGTATCGAGCATCCGGATA 59.528 44.000 18.63 0.42 0.00 2.59
164 165 4.278669 GGTATATGTATCGAGCATCCGGAT 59.721 45.833 12.38 12.38 0.00 4.18
165 166 3.630769 GGTATATGTATCGAGCATCCGGA 59.369 47.826 6.61 6.61 0.00 5.14
166 167 3.243434 GGGTATATGTATCGAGCATCCGG 60.243 52.174 8.30 0.00 0.00 5.14
167 168 3.548214 CGGGTATATGTATCGAGCATCCG 60.548 52.174 8.30 10.83 0.00 4.18
168 169 3.630769 TCGGGTATATGTATCGAGCATCC 59.369 47.826 8.30 4.97 0.00 3.51
169 170 4.895224 TCGGGTATATGTATCGAGCATC 57.105 45.455 8.30 0.00 0.00 3.91
170 171 5.854010 ATTCGGGTATATGTATCGAGCAT 57.146 39.130 9.68 9.68 0.00 3.79
171 172 5.654603 AATTCGGGTATATGTATCGAGCA 57.345 39.130 0.00 0.00 0.00 4.26
172 173 7.113124 CGATTAATTCGGGTATATGTATCGAGC 59.887 40.741 0.00 0.00 44.28 5.03
173 174 8.490291 CGATTAATTCGGGTATATGTATCGAG 57.510 38.462 0.00 0.00 44.28 4.04
189 190 8.723777 AAAACCGAACTTTCTTCGATTAATTC 57.276 30.769 4.08 0.00 43.97 2.17
190 191 9.603298 GTAAAACCGAACTTTCTTCGATTAATT 57.397 29.630 4.08 0.00 43.97 1.40
191 192 7.953710 CGTAAAACCGAACTTTCTTCGATTAAT 59.046 33.333 4.08 0.00 43.97 1.40
192 193 7.282916 CGTAAAACCGAACTTTCTTCGATTAA 58.717 34.615 4.08 0.00 43.97 1.40
193 194 6.128849 CCGTAAAACCGAACTTTCTTCGATTA 60.129 38.462 4.08 0.00 43.97 1.75
194 195 5.333568 CCGTAAAACCGAACTTTCTTCGATT 60.334 40.000 4.08 0.00 43.97 3.34
195 196 4.151157 CCGTAAAACCGAACTTTCTTCGAT 59.849 41.667 4.08 0.00 43.97 3.59
196 197 3.490526 CCGTAAAACCGAACTTTCTTCGA 59.509 43.478 4.08 0.00 43.97 3.71
197 198 3.490526 TCCGTAAAACCGAACTTTCTTCG 59.509 43.478 0.00 0.00 41.21 3.79
198 199 5.379827 CATCCGTAAAACCGAACTTTCTTC 58.620 41.667 0.00 0.00 0.00 2.87
199 200 4.214758 CCATCCGTAAAACCGAACTTTCTT 59.785 41.667 0.00 0.00 0.00 2.52
200 201 3.749609 CCATCCGTAAAACCGAACTTTCT 59.250 43.478 0.00 0.00 0.00 2.52
201 202 3.120095 CCCATCCGTAAAACCGAACTTTC 60.120 47.826 0.00 0.00 0.00 2.62
202 203 2.815503 CCCATCCGTAAAACCGAACTTT 59.184 45.455 0.00 0.00 0.00 2.66
203 204 2.429478 CCCATCCGTAAAACCGAACTT 58.571 47.619 0.00 0.00 0.00 2.66
204 205 1.947212 GCCCATCCGTAAAACCGAACT 60.947 52.381 0.00 0.00 0.00 3.01
205 206 0.448990 GCCCATCCGTAAAACCGAAC 59.551 55.000 0.00 0.00 0.00 3.95
206 207 0.325602 AGCCCATCCGTAAAACCGAA 59.674 50.000 0.00 0.00 0.00 4.30
207 208 0.391927 CAGCCCATCCGTAAAACCGA 60.392 55.000 0.00 0.00 0.00 4.69
208 209 0.391927 TCAGCCCATCCGTAAAACCG 60.392 55.000 0.00 0.00 0.00 4.44
209 210 1.092348 GTCAGCCCATCCGTAAAACC 58.908 55.000 0.00 0.00 0.00 3.27
210 211 1.092348 GGTCAGCCCATCCGTAAAAC 58.908 55.000 0.00 0.00 0.00 2.43
211 212 0.391927 CGGTCAGCCCATCCGTAAAA 60.392 55.000 0.00 0.00 39.51 1.52
212 213 1.219664 CGGTCAGCCCATCCGTAAA 59.780 57.895 0.00 0.00 39.51 2.01
213 214 1.259142 TTCGGTCAGCCCATCCGTAA 61.259 55.000 0.00 0.00 43.94 3.18
214 215 1.046472 ATTCGGTCAGCCCATCCGTA 61.046 55.000 0.00 0.00 43.94 4.02
215 216 1.910580 AATTCGGTCAGCCCATCCGT 61.911 55.000 0.00 0.00 43.94 4.69
216 217 0.748005 AAATTCGGTCAGCCCATCCG 60.748 55.000 0.00 0.00 44.76 4.18
217 218 2.341846 TAAATTCGGTCAGCCCATCC 57.658 50.000 0.00 0.00 0.00 3.51
218 219 3.251004 GTCATAAATTCGGTCAGCCCATC 59.749 47.826 0.00 0.00 0.00 3.51
219 220 3.214328 GTCATAAATTCGGTCAGCCCAT 58.786 45.455 0.00 0.00 0.00 4.00
220 221 2.639065 GTCATAAATTCGGTCAGCCCA 58.361 47.619 0.00 0.00 0.00 5.36
221 222 1.947456 GGTCATAAATTCGGTCAGCCC 59.053 52.381 0.00 0.00 0.00 5.19
222 223 1.597663 CGGTCATAAATTCGGTCAGCC 59.402 52.381 0.00 0.00 0.00 4.85
223 224 2.546778 TCGGTCATAAATTCGGTCAGC 58.453 47.619 0.00 0.00 0.00 4.26
224 225 3.555956 CCTTCGGTCATAAATTCGGTCAG 59.444 47.826 0.00 0.00 0.00 3.51
225 226 3.196039 TCCTTCGGTCATAAATTCGGTCA 59.804 43.478 0.00 0.00 0.00 4.02
226 227 3.788937 TCCTTCGGTCATAAATTCGGTC 58.211 45.455 0.00 0.00 0.00 4.79
227 228 3.899052 TCCTTCGGTCATAAATTCGGT 57.101 42.857 0.00 0.00 0.00 4.69
228 229 5.505654 CCAAATCCTTCGGTCATAAATTCGG 60.506 44.000 0.00 0.00 0.00 4.30
229 230 5.065988 ACCAAATCCTTCGGTCATAAATTCG 59.934 40.000 0.00 0.00 0.00 3.34
230 231 6.451064 ACCAAATCCTTCGGTCATAAATTC 57.549 37.500 0.00 0.00 0.00 2.17
231 232 6.850752 AACCAAATCCTTCGGTCATAAATT 57.149 33.333 0.00 0.00 30.91 1.82
232 233 6.404293 CGAAACCAAATCCTTCGGTCATAAAT 60.404 38.462 0.00 0.00 38.57 1.40
233 234 5.106475 CGAAACCAAATCCTTCGGTCATAAA 60.106 40.000 0.00 0.00 38.57 1.40
234 235 4.393680 CGAAACCAAATCCTTCGGTCATAA 59.606 41.667 0.00 0.00 38.57 1.90
235 236 3.936453 CGAAACCAAATCCTTCGGTCATA 59.064 43.478 0.00 0.00 38.57 2.15
236 237 2.747446 CGAAACCAAATCCTTCGGTCAT 59.253 45.455 0.00 0.00 38.57 3.06
237 238 2.147958 CGAAACCAAATCCTTCGGTCA 58.852 47.619 0.00 0.00 38.57 4.02
238 239 2.894307 CGAAACCAAATCCTTCGGTC 57.106 50.000 0.00 0.00 38.57 4.79
241 242 1.401018 GCACCGAAACCAAATCCTTCG 60.401 52.381 0.00 0.00 41.18 3.79
242 243 1.067846 GGCACCGAAACCAAATCCTTC 60.068 52.381 0.00 0.00 0.00 3.46
243 244 0.966179 GGCACCGAAACCAAATCCTT 59.034 50.000 0.00 0.00 0.00 3.36
244 245 0.112412 AGGCACCGAAACCAAATCCT 59.888 50.000 0.00 0.00 0.00 3.24
245 246 0.966179 AAGGCACCGAAACCAAATCC 59.034 50.000 0.00 0.00 0.00 3.01
246 247 1.401018 CGAAGGCACCGAAACCAAATC 60.401 52.381 0.00 0.00 0.00 2.17
247 248 0.596082 CGAAGGCACCGAAACCAAAT 59.404 50.000 0.00 0.00 0.00 2.32
248 249 0.464013 TCGAAGGCACCGAAACCAAA 60.464 50.000 0.00 0.00 32.64 3.28
249 250 0.882927 CTCGAAGGCACCGAAACCAA 60.883 55.000 3.11 0.00 35.48 3.67
250 251 1.301401 CTCGAAGGCACCGAAACCA 60.301 57.895 3.11 0.00 35.48 3.67
251 252 0.883370 AACTCGAAGGCACCGAAACC 60.883 55.000 3.11 0.00 35.48 3.27
252 253 0.511653 GAACTCGAAGGCACCGAAAC 59.488 55.000 3.11 0.00 35.48 2.78
253 254 0.942410 CGAACTCGAAGGCACCGAAA 60.942 55.000 0.00 0.00 43.02 3.46
254 255 1.372499 CGAACTCGAAGGCACCGAA 60.372 57.895 0.00 0.00 43.02 4.30
255 256 2.257371 CGAACTCGAAGGCACCGA 59.743 61.111 0.00 1.61 43.02 4.69
256 257 2.809601 CCGAACTCGAAGGCACCG 60.810 66.667 0.00 0.00 43.02 4.94
257 258 1.737008 GACCGAACTCGAAGGCACC 60.737 63.158 0.00 0.00 43.02 5.01
258 259 0.733223 GAGACCGAACTCGAAGGCAC 60.733 60.000 0.00 0.00 43.02 5.01
259 260 1.176619 TGAGACCGAACTCGAAGGCA 61.177 55.000 0.00 0.00 43.02 4.75
260 261 0.456995 CTGAGACCGAACTCGAAGGC 60.457 60.000 0.00 0.00 43.02 4.35
261 262 0.882474 ACTGAGACCGAACTCGAAGG 59.118 55.000 0.00 0.00 43.02 3.46
262 263 2.708386 AACTGAGACCGAACTCGAAG 57.292 50.000 0.00 0.00 43.02 3.79
263 264 3.144506 ACTAACTGAGACCGAACTCGAA 58.855 45.455 0.00 0.00 43.02 3.71
264 265 2.775890 ACTAACTGAGACCGAACTCGA 58.224 47.619 0.00 0.00 43.02 4.04
265 266 3.490399 GAACTAACTGAGACCGAACTCG 58.510 50.000 0.00 0.00 39.49 4.18
266 267 3.490399 CGAACTAACTGAGACCGAACTC 58.510 50.000 0.00 0.00 37.42 3.01
267 268 2.228343 CCGAACTAACTGAGACCGAACT 59.772 50.000 0.00 0.00 0.00 3.01
268 269 2.030451 ACCGAACTAACTGAGACCGAAC 60.030 50.000 0.00 0.00 0.00 3.95
269 270 2.233271 ACCGAACTAACTGAGACCGAA 58.767 47.619 0.00 0.00 0.00 4.30
270 271 1.901591 ACCGAACTAACTGAGACCGA 58.098 50.000 0.00 0.00 0.00 4.69
271 272 2.719426 AACCGAACTAACTGAGACCG 57.281 50.000 0.00 0.00 0.00 4.79
272 273 3.064931 CCAAACCGAACTAACTGAGACC 58.935 50.000 0.00 0.00 0.00 3.85
273 274 3.725490 ACCAAACCGAACTAACTGAGAC 58.275 45.455 0.00 0.00 0.00 3.36
274 275 5.733620 ATACCAAACCGAACTAACTGAGA 57.266 39.130 0.00 0.00 0.00 3.27
275 276 6.796705 AAATACCAAACCGAACTAACTGAG 57.203 37.500 0.00 0.00 0.00 3.35
276 277 6.073657 CGAAAATACCAAACCGAACTAACTGA 60.074 38.462 0.00 0.00 0.00 3.41
277 278 6.075280 CGAAAATACCAAACCGAACTAACTG 58.925 40.000 0.00 0.00 0.00 3.16
278 279 5.759763 ACGAAAATACCAAACCGAACTAACT 59.240 36.000 0.00 0.00 0.00 2.24
279 280 5.989249 ACGAAAATACCAAACCGAACTAAC 58.011 37.500 0.00 0.00 0.00 2.34
280 281 5.757320 TGACGAAAATACCAAACCGAACTAA 59.243 36.000 0.00 0.00 0.00 2.24
281 282 5.295950 TGACGAAAATACCAAACCGAACTA 58.704 37.500 0.00 0.00 0.00 2.24
282 283 4.128643 TGACGAAAATACCAAACCGAACT 58.871 39.130 0.00 0.00 0.00 3.01
283 284 4.471157 TGACGAAAATACCAAACCGAAC 57.529 40.909 0.00 0.00 0.00 3.95
284 285 4.143073 CGATGACGAAAATACCAAACCGAA 60.143 41.667 0.00 0.00 42.66 4.30
285 286 3.368539 CGATGACGAAAATACCAAACCGA 59.631 43.478 0.00 0.00 42.66 4.69
286 287 3.484557 CCGATGACGAAAATACCAAACCG 60.485 47.826 0.00 0.00 42.66 4.44
287 288 3.437741 ACCGATGACGAAAATACCAAACC 59.562 43.478 0.00 0.00 42.66 3.27
288 289 4.673534 ACCGATGACGAAAATACCAAAC 57.326 40.909 0.00 0.00 42.66 2.93
289 290 5.692613 AAACCGATGACGAAAATACCAAA 57.307 34.783 0.00 0.00 42.66 3.28
290 291 6.988622 ATAAACCGATGACGAAAATACCAA 57.011 33.333 0.00 0.00 42.66 3.67
291 292 7.307514 GCATATAAACCGATGACGAAAATACCA 60.308 37.037 0.00 0.00 42.66 3.25
292 293 7.013529 GCATATAAACCGATGACGAAAATACC 58.986 38.462 0.00 0.00 42.66 2.73
293 294 7.013529 GGCATATAAACCGATGACGAAAATAC 58.986 38.462 0.00 0.00 42.66 1.89
294 295 6.148150 GGGCATATAAACCGATGACGAAAATA 59.852 38.462 0.00 0.00 42.66 1.40
295 296 5.048991 GGGCATATAAACCGATGACGAAAAT 60.049 40.000 0.00 0.00 42.66 1.82
296 297 4.273969 GGGCATATAAACCGATGACGAAAA 59.726 41.667 0.00 0.00 42.66 2.29
297 298 3.810941 GGGCATATAAACCGATGACGAAA 59.189 43.478 0.00 0.00 42.66 3.46
298 299 3.181464 TGGGCATATAAACCGATGACGAA 60.181 43.478 0.00 0.00 42.66 3.85
299 300 2.365941 TGGGCATATAAACCGATGACGA 59.634 45.455 0.00 0.00 42.66 4.20
300 301 2.761559 TGGGCATATAAACCGATGACG 58.238 47.619 0.00 0.00 31.26 4.35
301 302 3.689649 GGATGGGCATATAAACCGATGAC 59.310 47.826 0.00 0.00 0.00 3.06
302 303 3.308117 GGGATGGGCATATAAACCGATGA 60.308 47.826 0.00 0.00 0.00 2.92
303 304 3.016736 GGGATGGGCATATAAACCGATG 58.983 50.000 0.00 0.00 0.00 3.84
304 305 2.647299 TGGGATGGGCATATAAACCGAT 59.353 45.455 0.00 0.00 0.00 4.18
305 306 2.058705 TGGGATGGGCATATAAACCGA 58.941 47.619 0.00 0.00 0.00 4.69
306 307 2.577606 TGGGATGGGCATATAAACCG 57.422 50.000 0.00 0.00 0.00 4.44
307 308 4.956075 CCTAATGGGATGGGCATATAAACC 59.044 45.833 0.00 0.00 37.23 3.27
308 309 4.402474 GCCTAATGGGATGGGCATATAAAC 59.598 45.833 0.00 0.00 43.59 2.01
309 310 4.609301 GCCTAATGGGATGGGCATATAAA 58.391 43.478 0.00 0.00 43.59 1.40
310 311 4.249638 GCCTAATGGGATGGGCATATAA 57.750 45.455 0.00 0.00 43.59 0.98
311 312 3.951563 GCCTAATGGGATGGGCATATA 57.048 47.619 0.00 0.00 43.59 0.86
312 313 2.834638 GCCTAATGGGATGGGCATAT 57.165 50.000 0.00 0.00 43.59 1.78
328 329 1.656818 CGCGGATGAAAACCATGCCT 61.657 55.000 0.00 0.00 40.08 4.75
343 344 1.567504 ATTCGTTTCTATCCACGCGG 58.432 50.000 12.47 0.00 36.32 6.46
348 349 4.641541 TCCGTCTGTATTCGTTTCTATCCA 59.358 41.667 0.00 0.00 0.00 3.41
362 363 4.519213 CCAACCCATTTTATCCGTCTGTA 58.481 43.478 0.00 0.00 0.00 2.74
363 364 3.352648 CCAACCCATTTTATCCGTCTGT 58.647 45.455 0.00 0.00 0.00 3.41
387 388 1.234821 TGCTAAGGCAAACTCCAACG 58.765 50.000 0.00 0.00 46.36 4.10
471 472 1.411246 TGGAAATCGATCGGACGGATT 59.589 47.619 16.41 4.13 34.82 3.01
491 523 1.528309 CGAGGGTTTTGGCTGGTGT 60.528 57.895 0.00 0.00 0.00 4.16
768 800 2.210961 CGACCAGCTATCTCGAGTACA 58.789 52.381 13.13 0.00 0.00 2.90
774 980 2.450960 CGAGGCGACCAGCTATCTCG 62.451 65.000 0.00 0.00 44.23 4.04
805 1011 6.918569 TCTGAGAAGTCGCATTAATACTAAGC 59.081 38.462 0.00 0.00 0.00 3.09
831 1037 9.113838 CAGCAGTAAGAAAGTGGATTTATATGT 57.886 33.333 0.00 0.00 0.00 2.29
871 1077 7.119846 GCCAGCGATAATACTAAGAAAATGGAT 59.880 37.037 0.00 0.00 0.00 3.41
876 1082 6.257849 CAGTGCCAGCGATAATACTAAGAAAA 59.742 38.462 0.00 0.00 0.00 2.29
909 1115 7.962995 TGATCTATGAGACTCAAGTTAACCT 57.037 36.000 9.70 0.00 0.00 3.50
976 1188 3.188460 GCACAAAGATTGAAGCGTCCTTA 59.812 43.478 0.00 0.00 0.00 2.69
1033 1245 1.735376 TTCGGATAGGACGGAGCAGC 61.735 60.000 0.00 0.00 0.00 5.25
1036 1248 0.311477 GAGTTCGGATAGGACGGAGC 59.689 60.000 0.00 0.00 0.00 4.70
1059 1271 1.629043 AGTTCTCGCTTGACCAGGTA 58.371 50.000 0.00 0.00 0.00 3.08
1155 1368 5.874810 TCCAGTTGATGAAGTACAGTAATGC 59.125 40.000 0.00 0.00 0.00 3.56
1177 1390 4.098960 ACATGATGAATGCAAGGTCAATCC 59.901 41.667 0.00 0.00 40.22 3.01
1202 1564 5.652891 TGCGGCTGGGTTCTATAATTAAAAA 59.347 36.000 0.00 0.00 0.00 1.94
1206 1568 4.425180 TTGCGGCTGGGTTCTATAATTA 57.575 40.909 0.00 0.00 0.00 1.40
1224 1586 1.508088 CACGAGGCCCTTCAATTGC 59.492 57.895 0.00 0.00 0.00 3.56
1260 1622 4.413520 TCCAATGGGAAAAGGATCTCTAGG 59.586 45.833 0.00 0.00 41.32 3.02
1300 1662 5.854338 TCGTGTTTTTGTGAAGACAAGAAAC 59.146 36.000 0.00 0.00 43.03 2.78
1304 1666 3.786048 GCTCGTGTTTTTGTGAAGACAAG 59.214 43.478 0.00 0.00 43.03 3.16
1346 1708 7.668052 AGCCTACCAACATGAACTATACAAAAA 59.332 33.333 0.00 0.00 0.00 1.94
1351 1713 7.052142 AGTAGCCTACCAACATGAACTATAC 57.948 40.000 0.00 0.00 0.00 1.47
1352 1714 6.837048 TGAGTAGCCTACCAACATGAACTATA 59.163 38.462 0.00 0.00 0.00 1.31
1420 1783 8.472413 ACAAGCACTTAATTTGCAGAATATCAT 58.528 29.630 10.84 0.00 42.83 2.45
1435 1798 4.502604 GGTGGTACTCTCACAAGCACTTAA 60.503 45.833 4.19 0.00 40.53 1.85
1439 1802 1.344763 AGGTGGTACTCTCACAAGCAC 59.655 52.381 3.62 0.00 40.10 4.40
1472 1835 4.019681 ACTTCAAATTACCCATCGTCTCCA 60.020 41.667 0.00 0.00 0.00 3.86
1514 1877 9.604626 GAAACTTCAAATTGATCACTGAGTAAG 57.395 33.333 0.00 0.00 0.00 2.34
1515 1878 9.342308 AGAAACTTCAAATTGATCACTGAGTAA 57.658 29.630 0.00 0.00 0.00 2.24
1516 1879 8.908786 AGAAACTTCAAATTGATCACTGAGTA 57.091 30.769 0.00 0.00 0.00 2.59
1517 1880 7.814264 AGAAACTTCAAATTGATCACTGAGT 57.186 32.000 0.00 0.00 0.00 3.41
1518 1881 7.806960 GGAAGAAACTTCAAATTGATCACTGAG 59.193 37.037 12.46 0.00 0.00 3.35
1519 1882 7.255590 GGGAAGAAACTTCAAATTGATCACTGA 60.256 37.037 12.46 0.00 0.00 3.41
1520 1883 6.865205 GGGAAGAAACTTCAAATTGATCACTG 59.135 38.462 12.46 0.00 0.00 3.66
1521 1884 6.550854 TGGGAAGAAACTTCAAATTGATCACT 59.449 34.615 12.46 0.00 0.00 3.41
1522 1885 6.748132 TGGGAAGAAACTTCAAATTGATCAC 58.252 36.000 12.46 0.00 0.00 3.06
1523 1886 6.975196 TGGGAAGAAACTTCAAATTGATCA 57.025 33.333 12.46 0.00 0.00 2.92
1592 1955 5.549742 ATGTTTCTGGCTTTTCCATTCAA 57.450 34.783 0.00 0.00 45.50 2.69
1598 1961 4.309933 CCTCAAATGTTTCTGGCTTTTCC 58.690 43.478 0.00 0.00 0.00 3.13
1639 2002 2.486472 ATCACTGACCAAGAGCCAAG 57.514 50.000 0.00 0.00 0.00 3.61
1656 2019 6.487689 AAGCAGCTGACTTGTTAAACTATC 57.512 37.500 20.43 0.00 0.00 2.08
1682 2045 3.480185 GCGCTGTTAATTTGCAATTGTCG 60.480 43.478 7.40 0.00 0.00 4.35
1703 2066 3.754188 ACATTTCAGATCGAGCAAAGC 57.246 42.857 2.38 0.00 0.00 3.51
1736 2099 2.092753 TGGTTCAAGGAGATCTGCATCC 60.093 50.000 17.24 10.70 35.71 3.51
1737 2100 3.272574 TGGTTCAAGGAGATCTGCATC 57.727 47.619 17.24 0.00 0.00 3.91
1782 2145 1.338579 TGCGCATGGTTCAGTATCACA 60.339 47.619 5.66 0.00 0.00 3.58
1802 2165 2.028476 TCGAGACCATGAAATTGACCGT 60.028 45.455 0.00 0.00 0.00 4.83
1882 2245 8.307483 TGGGCGATAAAATTTTCATTAAGACAA 58.693 29.630 6.72 0.00 0.00 3.18
1897 2260 5.975693 AAACAAGAAGATGGGCGATAAAA 57.024 34.783 0.00 0.00 0.00 1.52
1931 2297 2.219216 CGGCAAGCAAACAACTGAAATG 59.781 45.455 0.00 0.00 0.00 2.32
1954 2320 7.882791 AGATTTACATGACCATCAACAGTACAA 59.117 33.333 0.00 0.00 0.00 2.41
1961 2327 7.186804 CGGTAAAGATTTACATGACCATCAAC 58.813 38.462 15.35 0.00 43.64 3.18
2075 2441 8.422577 AAATCTAACCTTCCAGCTGTTTTTAT 57.577 30.769 13.81 0.00 0.00 1.40
2106 2472 4.754114 TGTGGCAAAATAGAAATTTGGTGC 59.246 37.500 0.00 0.00 37.78 5.01
2108 2474 5.990996 CAGTGTGGCAAAATAGAAATTTGGT 59.009 36.000 0.00 0.00 38.04 3.67
2142 2508 1.338674 TGGCCGTAAGTGGAACATGAG 60.339 52.381 0.00 0.00 44.52 2.90
2186 2552 3.682999 GCTTATCCTGACTTCCTTGTCCC 60.683 52.174 0.00 0.00 36.21 4.46
2188 2554 4.081420 TGAGCTTATCCTGACTTCCTTGTC 60.081 45.833 0.00 0.00 37.47 3.18
2190 2556 4.187694 GTGAGCTTATCCTGACTTCCTTG 58.812 47.826 0.00 0.00 0.00 3.61
2224 2590 7.991084 AATAAATAGAATGCATGCTAGCTGA 57.009 32.000 19.31 3.63 34.99 4.26
2243 2609 9.933723 GAGGGAAAGTAGTACTGTACAAATAAA 57.066 33.333 19.27 0.00 0.00 1.40
2244 2610 9.317827 AGAGGGAAAGTAGTACTGTACAAATAA 57.682 33.333 19.27 0.00 0.00 1.40
2246 2612 7.234988 ACAGAGGGAAAGTAGTACTGTACAAAT 59.765 37.037 19.27 2.40 35.77 2.32
2345 2833 7.151999 TCTGACAAGAACAAAGCTGTAAAAA 57.848 32.000 0.00 0.00 33.45 1.94
2414 2902 0.254178 CTGCAACCTAGGCCATCTGT 59.746 55.000 9.30 0.00 0.00 3.41
2415 2903 0.543277 TCTGCAACCTAGGCCATCTG 59.457 55.000 9.30 0.00 0.00 2.90
2416 2904 1.516110 ATCTGCAACCTAGGCCATCT 58.484 50.000 9.30 0.00 0.00 2.90
2476 2964 8.500773 GTTGAACAGTAATTTAGAAACATCCGA 58.499 33.333 0.00 0.00 0.00 4.55
2577 3066 3.258872 TCCAGCAAATGAAATTCCCAGTG 59.741 43.478 0.00 0.00 33.67 3.66
2578 3067 3.509442 TCCAGCAAATGAAATTCCCAGT 58.491 40.909 0.00 0.00 33.67 4.00
2580 3069 5.104982 GGTAATCCAGCAAATGAAATTCCCA 60.105 40.000 0.00 0.00 33.67 4.37
2581 3070 5.129320 AGGTAATCCAGCAAATGAAATTCCC 59.871 40.000 0.00 0.00 33.06 3.97
2583 3072 6.866480 TGAGGTAATCCAGCAAATGAAATTC 58.134 36.000 0.00 0.00 33.06 2.17
2584 3073 6.664816 TCTGAGGTAATCCAGCAAATGAAATT 59.335 34.615 0.00 0.00 35.04 1.82
2585 3074 6.189859 TCTGAGGTAATCCAGCAAATGAAAT 58.810 36.000 0.00 0.00 35.89 2.17
2790 3279 1.619654 ACTGCAAAGCCACAATGCTA 58.380 45.000 0.00 0.00 41.80 3.49
2867 3385 9.120538 GTATATGAAATTCTTGGCTCAGGTTTA 57.879 33.333 0.00 0.00 0.00 2.01
2868 3386 7.836183 AGTATATGAAATTCTTGGCTCAGGTTT 59.164 33.333 0.00 0.00 0.00 3.27
2869 3387 7.349598 AGTATATGAAATTCTTGGCTCAGGTT 58.650 34.615 0.00 0.00 0.00 3.50
2870 3388 6.904626 AGTATATGAAATTCTTGGCTCAGGT 58.095 36.000 0.00 0.00 0.00 4.00
2871 3389 8.370940 TCTAGTATATGAAATTCTTGGCTCAGG 58.629 37.037 0.00 0.00 0.00 3.86
2872 3390 9.770097 TTCTAGTATATGAAATTCTTGGCTCAG 57.230 33.333 0.00 0.00 0.00 3.35
2905 3423 6.773976 ATGTCAAACCCTAATAATGTGTGG 57.226 37.500 0.00 0.00 0.00 4.17
3324 3842 8.480501 CCATGAAATAGTTTGGATTTTCAGGAT 58.519 33.333 9.63 0.00 40.43 3.24
3348 3866 3.951563 AGCCAAAACTCATATAGGCCA 57.048 42.857 5.01 0.00 42.97 5.36
3445 3963 1.191535 TAGCAGTTGTACGCCCAGAT 58.808 50.000 0.00 0.00 0.00 2.90
3496 4014 1.233019 TGCAAGAGACTGCTGCTTTC 58.767 50.000 0.00 0.00 43.07 2.62
3527 4045 3.126831 CGGTGATAAGAGGAAGACATGC 58.873 50.000 0.00 0.00 0.00 4.06
3567 4085 6.585416 ACCAGAGAAGACAAAATTGCATTTT 58.415 32.000 0.75 0.75 42.81 1.82
3574 4092 5.827797 TGCAACTACCAGAGAAGACAAAATT 59.172 36.000 0.00 0.00 0.00 1.82
3624 4142 7.624360 TTTCTCAACAAATGTGAAGTAGTGT 57.376 32.000 0.00 0.00 41.20 3.55
3628 4146 7.920151 CACCAATTTCTCAACAAATGTGAAGTA 59.080 33.333 0.00 0.00 41.20 2.24
3635 4153 6.425721 AGAATGCACCAATTTCTCAACAAATG 59.574 34.615 0.00 0.00 0.00 2.32
3712 4230 7.334858 TGCAAACATCTATGGTGTAATACTCA 58.665 34.615 0.00 0.00 0.00 3.41
3821 4339 3.063485 GTGAGGACTTTGAAGAGTCTGC 58.937 50.000 0.00 0.00 44.32 4.26
3869 4387 2.218603 ACGTGATTGTGTTCACCTTCC 58.781 47.619 0.00 0.00 42.46 3.46
3870 4388 2.869801 TGACGTGATTGTGTTCACCTTC 59.130 45.455 0.00 0.00 42.46 3.46
3871 4389 2.912771 TGACGTGATTGTGTTCACCTT 58.087 42.857 0.00 0.00 42.46 3.50
3872 4390 2.613026 TGACGTGATTGTGTTCACCT 57.387 45.000 0.00 0.00 42.46 4.00
3942 4460 8.359642 GCCATTTAATGAATTATACAAGGAGCA 58.640 33.333 6.50 0.00 0.00 4.26
4230 4748 8.708378 ACACATTCTAGGATGTCATCTATTCAA 58.292 33.333 14.13 1.06 38.15 2.69
4232 4750 8.363390 TCACACATTCTAGGATGTCATCTATTC 58.637 37.037 14.13 0.00 38.15 1.75
4397 4923 5.217393 TCTTTCACATGTATACGGCGATAC 58.783 41.667 16.62 16.89 33.60 2.24
4422 4948 2.811431 CTCCAATACGCAACTTTGACCA 59.189 45.455 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.