Multiple sequence alignment - TraesCS3A01G235300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G235300 chr3A 100.000 3724 0 0 1 3724 438778518 438782241 0.000000e+00 6878.0
1 TraesCS3A01G235300 chr3A 91.429 70 6 0 58 127 596167304 596167235 3.060000e-16 97.1
2 TraesCS3A01G235300 chr3A 100.000 33 0 0 258 290 438778741 438778773 1.120000e-05 62.1
3 TraesCS3A01G235300 chr3A 100.000 33 0 0 224 256 438778775 438778807 1.120000e-05 62.1
4 TraesCS3A01G235300 chr3B 98.605 1434 18 1 387 1820 423537079 423535648 0.000000e+00 2536.0
5 TraesCS3A01G235300 chr3B 98.039 969 16 2 2106 3072 423535281 423534314 0.000000e+00 1681.0
6 TraesCS3A01G235300 chr3B 98.824 255 3 0 1821 2075 423535619 423535365 4.380000e-124 455.0
7 TraesCS3A01G235300 chr3B 94.700 283 15 0 3416 3698 771777440 771777722 1.230000e-119 440.0
8 TraesCS3A01G235300 chr3B 97.266 256 7 0 1 256 423537991 423537736 5.710000e-118 435.0
9 TraesCS3A01G235300 chr3B 92.627 217 13 1 3081 3294 423534159 423533943 3.610000e-80 309.0
10 TraesCS3A01G235300 chr3B 95.385 130 6 0 258 387 423537768 423537639 1.360000e-49 207.0
11 TraesCS3A01G235300 chr3B 97.222 36 1 0 2074 2109 423535345 423535310 1.120000e-05 62.1
12 TraesCS3A01G235300 chr3D 97.388 1378 30 4 445 1820 326128172 326126799 0.000000e+00 2340.0
13 TraesCS3A01G235300 chr3D 95.148 1319 55 6 2106 3417 326126432 326125116 0.000000e+00 2073.0
14 TraesCS3A01G235300 chr3D 96.479 284 9 1 3416 3698 571864719 571865002 5.630000e-128 468.0
15 TraesCS3A01G235300 chr3D 96.471 255 9 0 1821 2075 326126770 326126516 4.450000e-114 422.0
16 TraesCS3A01G235300 chr3D 94.141 256 15 0 1 256 326129158 326128903 1.250000e-104 390.0
17 TraesCS3A01G235300 chr3D 91.603 131 10 1 258 387 326128935 326128805 2.960000e-41 180.0
18 TraesCS3A01G235300 chr3D 97.368 76 2 0 387 462 326128265 326128190 3.020000e-26 130.0
19 TraesCS3A01G235300 chr1B 95.374 281 12 1 3419 3698 646542148 646542428 2.640000e-121 446.0
20 TraesCS3A01G235300 chr4B 94.406 286 15 1 3413 3698 474488281 474487997 4.420000e-119 438.0
21 TraesCS3A01G235300 chr2A 93.750 288 16 2 3412 3698 602717879 602717593 7.390000e-117 431.0
22 TraesCS3A01G235300 chr2A 89.437 284 25 3 3419 3698 710466446 710466164 1.650000e-93 353.0
23 TraesCS3A01G235300 chr2A 93.839 211 11 1 3419 3627 634872647 634872857 2.160000e-82 316.0
24 TraesCS3A01G235300 chr7B 93.310 284 18 1 3416 3698 532485315 532485598 5.750000e-113 418.0
25 TraesCS3A01G235300 chr4A 93.594 281 16 2 3419 3698 659210647 659210368 5.750000e-113 418.0
26 TraesCS3A01G235300 chr4D 88.095 84 9 1 258 341 300488830 300488912 8.510000e-17 99.0
27 TraesCS3A01G235300 chr4D 97.778 45 1 0 212 256 300488818 300488862 1.110000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G235300 chr3A 438778518 438782241 3723 False 2334.066667 6878 100.000000 1 3724 3 chr3A.!!$F1 3723
1 TraesCS3A01G235300 chr3B 423533943 423537991 4048 True 812.157143 2536 96.852571 1 3294 7 chr3B.!!$R1 3293
2 TraesCS3A01G235300 chr3D 326125116 326129158 4042 True 922.500000 2340 95.353167 1 3417 6 chr3D.!!$R1 3416

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
918 1515 1.792757 TTCATGGGGAAGCCAGCAGT 61.793 55.000 0.0 0.0 0.00 4.40 F
931 1528 2.034878 CCAGCAGTCTAGCATGTCCTA 58.965 52.381 0.0 0.0 36.85 2.94 F
1897 2522 1.267832 CGTTGGTGTTTCCGTGTTCAG 60.268 52.381 0.0 0.0 39.52 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1897 2522 1.730612 GTTTCCGTAGTGCAGTAAGGC 59.269 52.381 24.11 10.34 0.00 4.35 R
2540 3250 2.154074 AAACCCTCCGTTGCTCCCT 61.154 57.895 0.00 0.00 33.93 4.20 R
3557 4421 0.028902 GGCGCGAACAAAACTCAGTT 59.971 50.000 12.10 0.00 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
158 159 3.426695 CCTCAGTTCAATGATTTGACGCC 60.427 47.826 0.00 0.00 41.50 5.68
205 206 5.742063 ACTGAGGTATTTAACAAGCTACCC 58.258 41.667 0.00 0.00 35.28 3.69
208 209 6.727394 TGAGGTATTTAACAAGCTACCCAAT 58.273 36.000 0.00 0.00 35.28 3.16
242 243 4.321750 GGACTAGTTTGAGTGATCCAACGA 60.322 45.833 0.00 0.00 0.00 3.85
243 244 5.209818 ACTAGTTTGAGTGATCCAACGAA 57.790 39.130 0.00 0.00 0.00 3.85
244 245 5.607477 ACTAGTTTGAGTGATCCAACGAAA 58.393 37.500 0.00 0.00 0.00 3.46
245 246 5.696724 ACTAGTTTGAGTGATCCAACGAAAG 59.303 40.000 0.00 0.00 0.00 2.62
260 261 3.338249 ACGAAAGTGATGCAGCAATAGT 58.662 40.909 6.05 4.11 46.97 2.12
261 262 3.753272 ACGAAAGTGATGCAGCAATAGTT 59.247 39.130 6.05 0.00 46.97 2.24
262 263 4.216257 ACGAAAGTGATGCAGCAATAGTTT 59.784 37.500 6.05 6.97 46.97 2.66
263 264 4.556135 CGAAAGTGATGCAGCAATAGTTTG 59.444 41.667 6.05 0.00 35.85 2.93
264 265 5.617529 CGAAAGTGATGCAGCAATAGTTTGA 60.618 40.000 6.05 0.00 34.60 2.69
265 266 4.959596 AGTGATGCAGCAATAGTTTGAG 57.040 40.909 6.05 0.00 34.60 3.02
266 267 4.330250 AGTGATGCAGCAATAGTTTGAGT 58.670 39.130 6.05 0.00 34.60 3.41
267 268 4.155462 AGTGATGCAGCAATAGTTTGAGTG 59.845 41.667 6.05 0.00 34.60 3.51
268 269 4.154737 GTGATGCAGCAATAGTTTGAGTGA 59.845 41.667 6.05 0.00 34.60 3.41
269 270 4.945543 TGATGCAGCAATAGTTTGAGTGAT 59.054 37.500 0.00 0.00 34.60 3.06
270 271 4.952262 TGCAGCAATAGTTTGAGTGATC 57.048 40.909 0.00 0.00 34.60 2.92
271 272 3.691118 TGCAGCAATAGTTTGAGTGATCC 59.309 43.478 0.00 0.00 34.60 3.36
272 273 3.691118 GCAGCAATAGTTTGAGTGATCCA 59.309 43.478 0.00 0.00 34.60 3.41
273 274 4.156556 GCAGCAATAGTTTGAGTGATCCAA 59.843 41.667 0.00 0.00 34.60 3.53
274 275 5.634896 CAGCAATAGTTTGAGTGATCCAAC 58.365 41.667 0.00 0.00 34.60 3.77
275 276 4.393062 AGCAATAGTTTGAGTGATCCAACG 59.607 41.667 0.00 0.00 34.60 4.10
332 333 9.779237 CTTTACGTTTTCATGATATGATCGTAC 57.221 33.333 16.08 0.00 40.06 3.67
432 993 9.244292 AGTGTCACTATCTGTAATTCTTCTGTA 57.756 33.333 2.87 0.00 0.00 2.74
712 1309 6.400727 CGTTATTTGTCTTCCCTACTTGTTCG 60.401 42.308 0.00 0.00 0.00 3.95
918 1515 1.792757 TTCATGGGGAAGCCAGCAGT 61.793 55.000 0.00 0.00 0.00 4.40
931 1528 2.034878 CCAGCAGTCTAGCATGTCCTA 58.965 52.381 0.00 0.00 36.85 2.94
932 1529 2.632028 CCAGCAGTCTAGCATGTCCTAT 59.368 50.000 0.00 0.00 36.85 2.57
1122 1719 6.498651 ACCTCCGGAAGAATATCATCAACTAT 59.501 38.462 7.17 0.00 0.00 2.12
1245 1842 8.431910 GGGTAGATGTATCAAACCCTAATCTA 57.568 38.462 20.04 0.00 45.03 1.98
1897 2522 1.267832 CGTTGGTGTTTCCGTGTTCAG 60.268 52.381 0.00 0.00 39.52 3.02
2030 2655 6.293190 CGTGCACTTTAAGACAGTTTGGATTA 60.293 38.462 16.19 0.00 0.00 1.75
2048 2673 4.202631 GGATTACTGGGGCCATGGTATTTA 60.203 45.833 14.67 0.00 0.00 1.40
2120 2830 1.674817 CGTGGCCTTCGGTCAAACTAT 60.675 52.381 3.32 0.00 39.82 2.12
2630 3340 4.742659 GCACTGAAGAAGGAGTATTCGATC 59.257 45.833 0.00 0.00 34.27 3.69
2896 3609 5.356882 TCAGTGAAGTTATTTGCTTTCGG 57.643 39.130 0.00 0.00 0.00 4.30
2921 3634 5.990668 ACCAGTGAGTTTAAAGAACTCTGT 58.009 37.500 16.95 8.45 45.13 3.41
2980 3693 0.478072 TGCCTGTGTGACATTTCCCT 59.522 50.000 0.00 0.00 0.00 4.20
2991 3704 3.005684 TGACATTTCCCTGCATGAACAAC 59.994 43.478 0.00 0.00 0.00 3.32
3133 3993 9.944376 TTATCTGATAACCCACTAGATAATTGC 57.056 33.333 6.01 0.00 36.16 3.56
3134 3994 7.373617 TCTGATAACCCACTAGATAATTGCA 57.626 36.000 0.00 0.00 0.00 4.08
3192 4055 1.990799 TCACCGTGATTTAGCTGTCG 58.009 50.000 0.00 0.00 0.00 4.35
3207 4070 8.542497 TTTAGCTGTCGTTTTAGTATGAATGT 57.458 30.769 0.00 0.00 0.00 2.71
3234 4097 2.027192 TCCGAAAATGGACTTAGCTGCT 60.027 45.455 7.57 7.57 31.53 4.24
3294 4157 3.585289 TGGTAAGCCAATAAGTGAGGTGA 59.415 43.478 0.00 0.00 42.83 4.02
3300 4163 5.324409 AGCCAATAAGTGAGGTGATTTTCA 58.676 37.500 0.00 0.00 0.00 2.69
3315 4178 6.267070 GTGATTTTCAAGTAAAACCGTTGGA 58.733 36.000 0.00 0.00 39.82 3.53
3316 4179 6.752815 GTGATTTTCAAGTAAAACCGTTGGAA 59.247 34.615 0.00 0.00 39.82 3.53
3336 4199 2.432206 AAAATCGGCAAAACGGAAGG 57.568 45.000 0.00 0.00 0.00 3.46
3340 4203 3.292159 GGCAAAACGGAAGGCGGT 61.292 61.111 0.00 0.00 0.00 5.68
3357 4221 1.616628 GTGTGGGGTGAGGAGGGAT 60.617 63.158 0.00 0.00 0.00 3.85
3361 4225 1.306997 GGGGTGAGGAGGGATGACA 60.307 63.158 0.00 0.00 0.00 3.58
3385 4249 8.923270 ACAAAAGGAATGAATGTTTTAGGAGAA 58.077 29.630 0.00 0.00 0.00 2.87
3399 4263 2.654863 AGGAGAAATTAATGCACGGGG 58.345 47.619 0.00 0.00 0.00 5.73
3403 4267 3.694566 GAGAAATTAATGCACGGGGTCTT 59.305 43.478 0.00 0.00 0.00 3.01
3412 4276 1.980772 ACGGGGTCTTACTCACGGG 60.981 63.158 0.00 0.00 0.00 5.28
3417 4281 1.204231 GGGTCTTACTCACGGGACTTC 59.796 57.143 0.00 0.00 0.00 3.01
3418 4282 2.169330 GGTCTTACTCACGGGACTTCT 58.831 52.381 0.00 0.00 0.00 2.85
3419 4283 2.561858 GGTCTTACTCACGGGACTTCTT 59.438 50.000 0.00 0.00 0.00 2.52
3420 4284 3.006644 GGTCTTACTCACGGGACTTCTTT 59.993 47.826 0.00 0.00 0.00 2.52
3421 4285 4.502777 GGTCTTACTCACGGGACTTCTTTT 60.503 45.833 0.00 0.00 0.00 2.27
3422 4286 5.055144 GTCTTACTCACGGGACTTCTTTTT 58.945 41.667 0.00 0.00 0.00 1.94
3423 4287 5.050295 GTCTTACTCACGGGACTTCTTTTTG 60.050 44.000 0.00 0.00 0.00 2.44
3424 4288 1.947456 ACTCACGGGACTTCTTTTTGC 59.053 47.619 0.00 0.00 0.00 3.68
3425 4289 0.941542 TCACGGGACTTCTTTTTGCG 59.058 50.000 0.00 0.00 0.00 4.85
3426 4290 0.941542 CACGGGACTTCTTTTTGCGA 59.058 50.000 0.00 0.00 0.00 5.10
3427 4291 1.069906 CACGGGACTTCTTTTTGCGAG 60.070 52.381 0.00 0.00 0.00 5.03
3428 4292 0.517316 CGGGACTTCTTTTTGCGAGG 59.483 55.000 0.00 0.00 0.00 4.63
3429 4293 1.876416 CGGGACTTCTTTTTGCGAGGA 60.876 52.381 0.00 0.00 0.00 3.71
3430 4294 1.807142 GGGACTTCTTTTTGCGAGGAG 59.193 52.381 0.00 0.00 0.00 3.69
3431 4295 2.550208 GGGACTTCTTTTTGCGAGGAGA 60.550 50.000 0.00 0.00 0.00 3.71
3432 4296 3.139077 GGACTTCTTTTTGCGAGGAGAA 58.861 45.455 0.00 2.28 0.00 2.87
3433 4297 3.564225 GGACTTCTTTTTGCGAGGAGAAA 59.436 43.478 0.00 0.00 0.00 2.52
3434 4298 4.319839 GGACTTCTTTTTGCGAGGAGAAAG 60.320 45.833 2.08 2.08 0.00 2.62
3435 4299 4.451900 ACTTCTTTTTGCGAGGAGAAAGA 58.548 39.130 6.29 6.29 36.61 2.52
3436 4300 4.513318 ACTTCTTTTTGCGAGGAGAAAGAG 59.487 41.667 9.47 7.51 38.78 2.85
3437 4301 4.336889 TCTTTTTGCGAGGAGAAAGAGA 57.663 40.909 6.29 0.00 34.28 3.10
3438 4302 4.703897 TCTTTTTGCGAGGAGAAAGAGAA 58.296 39.130 6.29 0.00 34.28 2.87
3439 4303 5.308825 TCTTTTTGCGAGGAGAAAGAGAAT 58.691 37.500 6.29 0.00 34.28 2.40
3440 4304 5.765182 TCTTTTTGCGAGGAGAAAGAGAATT 59.235 36.000 6.29 0.00 34.28 2.17
3441 4305 6.263168 TCTTTTTGCGAGGAGAAAGAGAATTT 59.737 34.615 6.29 0.00 34.28 1.82
3442 4306 7.444183 TCTTTTTGCGAGGAGAAAGAGAATTTA 59.556 33.333 6.29 0.00 34.28 1.40
3443 4307 7.687941 TTTTGCGAGGAGAAAGAGAATTTAT 57.312 32.000 0.00 0.00 0.00 1.40
3444 4308 7.687941 TTTGCGAGGAGAAAGAGAATTTATT 57.312 32.000 0.00 0.00 0.00 1.40
3445 4309 8.786826 TTTGCGAGGAGAAAGAGAATTTATTA 57.213 30.769 0.00 0.00 0.00 0.98
3446 4310 8.786826 TTGCGAGGAGAAAGAGAATTTATTAA 57.213 30.769 0.00 0.00 0.00 1.40
3447 4311 8.964476 TGCGAGGAGAAAGAGAATTTATTAAT 57.036 30.769 0.00 0.00 0.00 1.40
3448 4312 9.046296 TGCGAGGAGAAAGAGAATTTATTAATC 57.954 33.333 0.00 0.00 0.00 1.75
3449 4313 9.046296 GCGAGGAGAAAGAGAATTTATTAATCA 57.954 33.333 0.00 0.00 0.00 2.57
3453 4317 9.657121 GGAGAAAGAGAATTTATTAATCAAGCG 57.343 33.333 0.00 0.00 0.00 4.68
3454 4318 9.657121 GAGAAAGAGAATTTATTAATCAAGCGG 57.343 33.333 0.00 0.00 0.00 5.52
3455 4319 8.131731 AGAAAGAGAATTTATTAATCAAGCGGC 58.868 33.333 0.00 0.00 0.00 6.53
3456 4320 5.990408 AGAGAATTTATTAATCAAGCGGCG 58.010 37.500 0.51 0.51 0.00 6.46
3457 4321 5.049405 AGAGAATTTATTAATCAAGCGGCGG 60.049 40.000 9.78 0.00 0.00 6.13
3458 4322 2.766970 TTTATTAATCAAGCGGCGGC 57.233 45.000 9.78 8.43 40.37 6.53
3459 4323 0.948678 TTATTAATCAAGCGGCGGCC 59.051 50.000 13.24 9.54 41.24 6.13
3460 4324 0.179043 TATTAATCAAGCGGCGGCCA 60.179 50.000 20.71 0.00 41.24 5.36
3461 4325 1.034838 ATTAATCAAGCGGCGGCCAA 61.035 50.000 20.71 3.02 41.24 4.52
3462 4326 1.653094 TTAATCAAGCGGCGGCCAAG 61.653 55.000 20.71 4.52 41.24 3.61
3463 4327 2.813226 TAATCAAGCGGCGGCCAAGT 62.813 55.000 20.71 0.00 41.24 3.16
3470 4334 3.064324 GGCGGCCAAGTCTGCATT 61.064 61.111 15.62 0.00 40.04 3.56
3471 4335 1.748879 GGCGGCCAAGTCTGCATTA 60.749 57.895 15.62 0.00 40.04 1.90
3472 4336 1.429423 GCGGCCAAGTCTGCATTAC 59.571 57.895 2.24 0.00 38.21 1.89
3473 4337 1.305219 GCGGCCAAGTCTGCATTACA 61.305 55.000 2.24 0.00 38.21 2.41
3474 4338 1.164411 CGGCCAAGTCTGCATTACAA 58.836 50.000 2.24 0.00 0.00 2.41
3475 4339 1.539388 CGGCCAAGTCTGCATTACAAA 59.461 47.619 2.24 0.00 0.00 2.83
3476 4340 2.414559 CGGCCAAGTCTGCATTACAAAG 60.415 50.000 2.24 0.00 0.00 2.77
3477 4341 2.819608 GGCCAAGTCTGCATTACAAAGA 59.180 45.455 0.00 0.00 0.00 2.52
3478 4342 3.445096 GGCCAAGTCTGCATTACAAAGAT 59.555 43.478 0.00 0.00 0.00 2.40
3479 4343 4.439289 GGCCAAGTCTGCATTACAAAGATC 60.439 45.833 0.00 0.00 0.00 2.75
3480 4344 4.156556 GCCAAGTCTGCATTACAAAGATCA 59.843 41.667 0.00 0.00 0.00 2.92
3481 4345 5.675575 GCCAAGTCTGCATTACAAAGATCAG 60.676 44.000 0.00 0.00 0.00 2.90
3482 4346 5.163683 CCAAGTCTGCATTACAAAGATCAGG 60.164 44.000 0.00 0.00 0.00 3.86
3483 4347 3.944015 AGTCTGCATTACAAAGATCAGGC 59.056 43.478 0.00 0.00 0.00 4.85
3484 4348 3.691118 GTCTGCATTACAAAGATCAGGCA 59.309 43.478 0.00 0.00 0.00 4.75
3485 4349 3.691118 TCTGCATTACAAAGATCAGGCAC 59.309 43.478 0.00 0.00 0.00 5.01
3486 4350 2.754552 TGCATTACAAAGATCAGGCACC 59.245 45.455 0.00 0.00 0.00 5.01
3487 4351 3.019564 GCATTACAAAGATCAGGCACCT 58.980 45.455 0.00 0.00 0.00 4.00
3488 4352 3.065925 GCATTACAAAGATCAGGCACCTC 59.934 47.826 0.00 0.00 0.00 3.85
3489 4353 2.672961 TACAAAGATCAGGCACCTCG 57.327 50.000 0.00 0.00 0.00 4.63
3490 4354 0.674895 ACAAAGATCAGGCACCTCGC 60.675 55.000 0.00 0.00 41.28 5.03
3499 4363 4.767255 GCACCTCGCCTGGTCCTG 62.767 72.222 0.00 0.00 38.45 3.86
3500 4364 2.997315 CACCTCGCCTGGTCCTGA 60.997 66.667 0.00 0.00 38.45 3.86
3501 4365 2.681778 ACCTCGCCTGGTCCTGAG 60.682 66.667 0.00 0.00 34.86 3.35
3502 4366 4.154347 CCTCGCCTGGTCCTGAGC 62.154 72.222 0.00 0.00 0.00 4.26
3506 4370 2.125350 GCCTGGTCCTGAGCGAAG 60.125 66.667 0.00 0.00 0.00 3.79
3533 4397 5.931532 CACGACAGTGCATTTCTTTATTCT 58.068 37.500 0.00 0.00 41.94 2.40
3534 4398 7.060600 CACGACAGTGCATTTCTTTATTCTA 57.939 36.000 0.00 0.00 41.94 2.10
3535 4399 6.955963 CACGACAGTGCATTTCTTTATTCTAC 59.044 38.462 0.00 0.00 41.94 2.59
3536 4400 6.092259 ACGACAGTGCATTTCTTTATTCTACC 59.908 38.462 0.00 0.00 0.00 3.18
3537 4401 6.092122 CGACAGTGCATTTCTTTATTCTACCA 59.908 38.462 0.00 0.00 0.00 3.25
3538 4402 7.360861 CGACAGTGCATTTCTTTATTCTACCAA 60.361 37.037 0.00 0.00 0.00 3.67
3539 4403 8.177119 ACAGTGCATTTCTTTATTCTACCAAA 57.823 30.769 0.00 0.00 0.00 3.28
3540 4404 8.637986 ACAGTGCATTTCTTTATTCTACCAAAA 58.362 29.630 0.00 0.00 0.00 2.44
3541 4405 9.643693 CAGTGCATTTCTTTATTCTACCAAAAT 57.356 29.630 0.00 0.00 0.00 1.82
3545 4409 9.759259 GCATTTCTTTATTCTACCAAAATTTGC 57.241 29.630 0.00 0.00 0.00 3.68
3560 4424 9.830975 ACCAAAATTTGCTAAAAATGACTAACT 57.169 25.926 0.00 0.00 0.00 2.24
3568 4432 9.515020 TTGCTAAAAATGACTAACTGAGTTTTG 57.485 29.630 1.97 0.00 39.06 2.44
3569 4433 8.682710 TGCTAAAAATGACTAACTGAGTTTTGT 58.317 29.630 1.97 3.16 39.06 2.83
3570 4434 9.516314 GCTAAAAATGACTAACTGAGTTTTGTT 57.484 29.630 1.97 0.00 39.06 2.83
3572 4436 8.614994 AAAAATGACTAACTGAGTTTTGTTCG 57.385 30.769 1.97 0.00 39.06 3.95
3573 4437 4.789095 TGACTAACTGAGTTTTGTTCGC 57.211 40.909 1.97 0.00 39.06 4.70
3574 4438 3.244345 TGACTAACTGAGTTTTGTTCGCG 59.756 43.478 1.97 0.00 39.06 5.87
3575 4439 2.033151 ACTAACTGAGTTTTGTTCGCGC 60.033 45.455 1.97 0.00 33.13 6.86
3576 4440 0.028902 AACTGAGTTTTGTTCGCGCC 59.971 50.000 0.00 0.00 0.00 6.53
3577 4441 0.814010 ACTGAGTTTTGTTCGCGCCT 60.814 50.000 0.00 0.00 0.00 5.52
3578 4442 1.144969 CTGAGTTTTGTTCGCGCCTA 58.855 50.000 0.00 0.00 0.00 3.93
3579 4443 1.529438 CTGAGTTTTGTTCGCGCCTAA 59.471 47.619 0.00 0.00 0.00 2.69
3580 4444 1.262151 TGAGTTTTGTTCGCGCCTAAC 59.738 47.619 0.00 12.16 0.00 2.34
3581 4445 1.262151 GAGTTTTGTTCGCGCCTAACA 59.738 47.619 16.55 16.55 35.12 2.41
3582 4446 1.877443 AGTTTTGTTCGCGCCTAACAT 59.123 42.857 19.94 6.16 36.75 2.71
3583 4447 1.976045 GTTTTGTTCGCGCCTAACATG 59.024 47.619 19.94 0.00 36.75 3.21
3584 4448 0.109964 TTTGTTCGCGCCTAACATGC 60.110 50.000 19.94 0.00 36.75 4.06
3585 4449 0.953471 TTGTTCGCGCCTAACATGCT 60.953 50.000 19.94 0.00 36.75 3.79
3586 4450 0.953471 TGTTCGCGCCTAACATGCTT 60.953 50.000 16.55 0.00 32.07 3.91
3587 4451 0.521242 GTTCGCGCCTAACATGCTTG 60.521 55.000 13.73 0.00 0.00 4.01
3588 4452 0.672091 TTCGCGCCTAACATGCTTGA 60.672 50.000 0.00 0.00 0.00 3.02
3589 4453 1.060937 CGCGCCTAACATGCTTGAC 59.939 57.895 0.00 0.00 0.00 3.18
3590 4454 1.361668 CGCGCCTAACATGCTTGACT 61.362 55.000 0.00 0.00 0.00 3.41
3591 4455 1.651987 GCGCCTAACATGCTTGACTA 58.348 50.000 6.60 0.00 0.00 2.59
3592 4456 2.006888 GCGCCTAACATGCTTGACTAA 58.993 47.619 6.60 0.00 0.00 2.24
3593 4457 2.418628 GCGCCTAACATGCTTGACTAAA 59.581 45.455 6.60 0.00 0.00 1.85
3594 4458 3.119990 GCGCCTAACATGCTTGACTAAAA 60.120 43.478 6.60 0.00 0.00 1.52
3595 4459 4.614993 GCGCCTAACATGCTTGACTAAAAA 60.615 41.667 6.60 0.00 0.00 1.94
3596 4460 5.640732 CGCCTAACATGCTTGACTAAAAAT 58.359 37.500 6.60 0.00 0.00 1.82
3597 4461 6.092748 CGCCTAACATGCTTGACTAAAAATT 58.907 36.000 6.60 0.00 0.00 1.82
3598 4462 6.251376 CGCCTAACATGCTTGACTAAAAATTC 59.749 38.462 6.60 0.00 0.00 2.17
3599 4463 6.531594 GCCTAACATGCTTGACTAAAAATTCC 59.468 38.462 6.60 0.00 0.00 3.01
3600 4464 7.035612 CCTAACATGCTTGACTAAAAATTCCC 58.964 38.462 6.60 0.00 0.00 3.97
3601 4465 6.670695 AACATGCTTGACTAAAAATTCCCT 57.329 33.333 6.60 0.00 0.00 4.20
3602 4466 7.775053 AACATGCTTGACTAAAAATTCCCTA 57.225 32.000 6.60 0.00 0.00 3.53
3603 4467 7.158099 ACATGCTTGACTAAAAATTCCCTAC 57.842 36.000 6.60 0.00 0.00 3.18
3604 4468 6.152831 ACATGCTTGACTAAAAATTCCCTACC 59.847 38.462 6.60 0.00 0.00 3.18
3605 4469 5.887754 TGCTTGACTAAAAATTCCCTACCT 58.112 37.500 0.00 0.00 0.00 3.08
3606 4470 6.311735 TGCTTGACTAAAAATTCCCTACCTT 58.688 36.000 0.00 0.00 0.00 3.50
3607 4471 6.780522 TGCTTGACTAAAAATTCCCTACCTTT 59.219 34.615 0.00 0.00 0.00 3.11
3608 4472 7.039993 TGCTTGACTAAAAATTCCCTACCTTTC 60.040 37.037 0.00 0.00 0.00 2.62
3609 4473 7.176865 GCTTGACTAAAAATTCCCTACCTTTCT 59.823 37.037 0.00 0.00 0.00 2.52
3610 4474 7.996098 TGACTAAAAATTCCCTACCTTTCTG 57.004 36.000 0.00 0.00 0.00 3.02
3611 4475 7.751646 TGACTAAAAATTCCCTACCTTTCTGA 58.248 34.615 0.00 0.00 0.00 3.27
3612 4476 8.221944 TGACTAAAAATTCCCTACCTTTCTGAA 58.778 33.333 0.00 0.00 0.00 3.02
3613 4477 8.637196 ACTAAAAATTCCCTACCTTTCTGAAG 57.363 34.615 0.00 0.00 0.00 3.02
3627 4491 7.693969 CCTTTCTGAAGGTGTGATCTAATTT 57.306 36.000 0.00 0.00 46.16 1.82
3628 4492 7.756558 CCTTTCTGAAGGTGTGATCTAATTTC 58.243 38.462 0.00 0.00 46.16 2.17
3629 4493 7.609532 CCTTTCTGAAGGTGTGATCTAATTTCT 59.390 37.037 0.00 0.00 46.16 2.52
3630 4494 8.924511 TTTCTGAAGGTGTGATCTAATTTCTT 57.075 30.769 0.00 0.00 0.00 2.52
3631 4495 7.912056 TCTGAAGGTGTGATCTAATTTCTTG 57.088 36.000 0.00 0.00 0.00 3.02
3632 4496 6.372659 TCTGAAGGTGTGATCTAATTTCTTGC 59.627 38.462 0.00 0.00 0.00 4.01
3633 4497 6.003326 TGAAGGTGTGATCTAATTTCTTGCA 58.997 36.000 0.00 0.00 0.00 4.08
3634 4498 5.886960 AGGTGTGATCTAATTTCTTGCAC 57.113 39.130 0.00 0.00 0.00 4.57
3635 4499 4.702131 AGGTGTGATCTAATTTCTTGCACC 59.298 41.667 0.00 0.00 42.78 5.01
3636 4500 4.458989 GGTGTGATCTAATTTCTTGCACCA 59.541 41.667 0.00 0.00 42.23 4.17
3637 4501 5.126061 GGTGTGATCTAATTTCTTGCACCAT 59.874 40.000 0.00 0.00 42.23 3.55
3638 4502 6.261118 GTGTGATCTAATTTCTTGCACCATC 58.739 40.000 0.00 0.00 0.00 3.51
3639 4503 5.945191 TGTGATCTAATTTCTTGCACCATCA 59.055 36.000 0.00 0.00 0.00 3.07
3640 4504 6.604396 TGTGATCTAATTTCTTGCACCATCAT 59.396 34.615 0.00 0.00 0.00 2.45
3641 4505 7.123098 TGTGATCTAATTTCTTGCACCATCATT 59.877 33.333 0.00 0.00 0.00 2.57
3642 4506 7.434307 GTGATCTAATTTCTTGCACCATCATTG 59.566 37.037 0.00 0.00 0.00 2.82
3643 4507 6.839124 TCTAATTTCTTGCACCATCATTGT 57.161 33.333 0.00 0.00 0.00 2.71
3644 4508 7.936496 TCTAATTTCTTGCACCATCATTGTA 57.064 32.000 0.00 0.00 0.00 2.41
3645 4509 8.523915 TCTAATTTCTTGCACCATCATTGTAT 57.476 30.769 0.00 0.00 0.00 2.29
3646 4510 8.407832 TCTAATTTCTTGCACCATCATTGTATG 58.592 33.333 0.00 0.00 0.00 2.39
3647 4511 6.778834 ATTTCTTGCACCATCATTGTATGA 57.221 33.333 0.00 0.00 44.55 2.15
3648 4512 5.823209 TTCTTGCACCATCATTGTATGAG 57.177 39.130 0.00 0.00 43.53 2.90
3649 4513 3.628942 TCTTGCACCATCATTGTATGAGC 59.371 43.478 0.00 0.00 43.53 4.26
3650 4514 3.286329 TGCACCATCATTGTATGAGCT 57.714 42.857 0.00 0.00 43.53 4.09
3651 4515 2.946990 TGCACCATCATTGTATGAGCTG 59.053 45.455 0.00 0.00 43.53 4.24
3652 4516 2.947652 GCACCATCATTGTATGAGCTGT 59.052 45.455 0.00 0.00 43.53 4.40
3653 4517 3.379372 GCACCATCATTGTATGAGCTGTT 59.621 43.478 0.00 0.00 43.53 3.16
3654 4518 4.497006 GCACCATCATTGTATGAGCTGTTC 60.497 45.833 0.00 0.00 43.53 3.18
3655 4519 4.637091 CACCATCATTGTATGAGCTGTTCA 59.363 41.667 0.00 0.00 43.53 3.18
3656 4520 4.880120 ACCATCATTGTATGAGCTGTTCAG 59.120 41.667 0.00 0.00 43.53 3.02
3657 4521 4.880120 CCATCATTGTATGAGCTGTTCAGT 59.120 41.667 0.00 0.00 43.53 3.41
3658 4522 5.007430 CCATCATTGTATGAGCTGTTCAGTC 59.993 44.000 0.00 0.00 43.53 3.51
3659 4523 5.151297 TCATTGTATGAGCTGTTCAGTCA 57.849 39.130 0.00 5.02 39.68 3.41
3660 4524 5.737860 TCATTGTATGAGCTGTTCAGTCAT 58.262 37.500 15.91 15.91 39.68 3.06
3661 4525 5.814188 TCATTGTATGAGCTGTTCAGTCATC 59.186 40.000 15.43 7.53 39.68 2.92
3662 4526 4.806640 TGTATGAGCTGTTCAGTCATCA 57.193 40.909 15.43 11.35 39.68 3.07
3663 4527 5.349061 TGTATGAGCTGTTCAGTCATCAT 57.651 39.130 15.43 15.50 39.68 2.45
3664 4528 5.354767 TGTATGAGCTGTTCAGTCATCATC 58.645 41.667 15.43 10.69 39.68 2.92
3665 4529 3.967332 TGAGCTGTTCAGTCATCATCA 57.033 42.857 0.00 0.00 0.00 3.07
3666 4530 3.858247 TGAGCTGTTCAGTCATCATCAG 58.142 45.455 0.00 0.00 0.00 2.90
3667 4531 3.260128 TGAGCTGTTCAGTCATCATCAGT 59.740 43.478 0.00 0.00 0.00 3.41
3668 4532 4.463891 TGAGCTGTTCAGTCATCATCAGTA 59.536 41.667 0.00 0.00 0.00 2.74
3669 4533 4.753233 AGCTGTTCAGTCATCATCAGTAC 58.247 43.478 1.78 0.00 0.00 2.73
3670 4534 4.465660 AGCTGTTCAGTCATCATCAGTACT 59.534 41.667 0.00 0.00 0.00 2.73
3671 4535 4.803088 GCTGTTCAGTCATCATCAGTACTC 59.197 45.833 0.00 0.00 0.00 2.59
3672 4536 4.986622 TGTTCAGTCATCATCAGTACTCG 58.013 43.478 0.00 0.00 0.00 4.18
3673 4537 4.459337 TGTTCAGTCATCATCAGTACTCGT 59.541 41.667 0.00 0.00 0.00 4.18
3674 4538 5.646360 TGTTCAGTCATCATCAGTACTCGTA 59.354 40.000 0.00 0.00 0.00 3.43
3675 4539 6.150474 TGTTCAGTCATCATCAGTACTCGTAA 59.850 38.462 0.00 0.00 0.00 3.18
3676 4540 6.944234 TCAGTCATCATCAGTACTCGTAAT 57.056 37.500 0.00 0.00 0.00 1.89
3677 4541 6.960468 TCAGTCATCATCAGTACTCGTAATC 58.040 40.000 0.00 0.00 0.00 1.75
3678 4542 6.542370 TCAGTCATCATCAGTACTCGTAATCA 59.458 38.462 0.00 0.00 0.00 2.57
3679 4543 7.067008 TCAGTCATCATCAGTACTCGTAATCAA 59.933 37.037 0.00 0.00 0.00 2.57
3680 4544 7.864882 CAGTCATCATCAGTACTCGTAATCAAT 59.135 37.037 0.00 0.00 0.00 2.57
3681 4545 8.417106 AGTCATCATCAGTACTCGTAATCAATT 58.583 33.333 0.00 0.00 0.00 2.32
3682 4546 9.035607 GTCATCATCAGTACTCGTAATCAATTT 57.964 33.333 0.00 0.00 0.00 1.82
3683 4547 9.249457 TCATCATCAGTACTCGTAATCAATTTC 57.751 33.333 0.00 0.00 0.00 2.17
3684 4548 9.034544 CATCATCAGTACTCGTAATCAATTTCA 57.965 33.333 0.00 0.00 0.00 2.69
3685 4549 8.407457 TCATCAGTACTCGTAATCAATTTCAC 57.593 34.615 0.00 0.00 0.00 3.18
3686 4550 8.032451 TCATCAGTACTCGTAATCAATTTCACA 58.968 33.333 0.00 0.00 0.00 3.58
3687 4551 8.655970 CATCAGTACTCGTAATCAATTTCACAA 58.344 33.333 0.00 0.00 0.00 3.33
3688 4552 8.014322 TCAGTACTCGTAATCAATTTCACAAC 57.986 34.615 0.00 0.00 0.00 3.32
3689 4553 7.654116 TCAGTACTCGTAATCAATTTCACAACA 59.346 33.333 0.00 0.00 0.00 3.33
3690 4554 8.443160 CAGTACTCGTAATCAATTTCACAACAT 58.557 33.333 0.00 0.00 0.00 2.71
3691 4555 8.656849 AGTACTCGTAATCAATTTCACAACATC 58.343 33.333 0.00 0.00 0.00 3.06
3692 4556 6.842163 ACTCGTAATCAATTTCACAACATCC 58.158 36.000 0.00 0.00 0.00 3.51
3693 4557 6.429692 ACTCGTAATCAATTTCACAACATCCA 59.570 34.615 0.00 0.00 0.00 3.41
3694 4558 7.040755 ACTCGTAATCAATTTCACAACATCCAA 60.041 33.333 0.00 0.00 0.00 3.53
3695 4559 7.652727 TCGTAATCAATTTCACAACATCCAAA 58.347 30.769 0.00 0.00 0.00 3.28
3696 4560 7.593273 TCGTAATCAATTTCACAACATCCAAAC 59.407 33.333 0.00 0.00 0.00 2.93
3697 4561 7.380870 CGTAATCAATTTCACAACATCCAAACA 59.619 33.333 0.00 0.00 0.00 2.83
3698 4562 9.206870 GTAATCAATTTCACAACATCCAAACAT 57.793 29.630 0.00 0.00 0.00 2.71
3699 4563 7.661127 ATCAATTTCACAACATCCAAACATG 57.339 32.000 0.00 0.00 0.00 3.21
3700 4564 6.814043 TCAATTTCACAACATCCAAACATGA 58.186 32.000 0.00 0.00 0.00 3.07
3701 4565 7.443477 TCAATTTCACAACATCCAAACATGAT 58.557 30.769 0.00 0.00 0.00 2.45
3702 4566 7.385478 TCAATTTCACAACATCCAAACATGATG 59.615 33.333 0.00 0.00 44.13 3.07
3703 4567 4.787260 TCACAACATCCAAACATGATGG 57.213 40.909 13.87 13.87 43.10 3.51
3704 4568 3.510753 TCACAACATCCAAACATGATGGG 59.489 43.478 18.08 6.28 43.10 4.00
3705 4569 3.258872 CACAACATCCAAACATGATGGGT 59.741 43.478 18.08 11.19 43.10 4.51
3706 4570 3.903090 ACAACATCCAAACATGATGGGTT 59.097 39.130 18.08 13.41 43.10 4.11
3707 4571 4.347583 ACAACATCCAAACATGATGGGTTT 59.652 37.500 18.08 5.66 43.10 3.27
3708 4572 5.163216 ACAACATCCAAACATGATGGGTTTT 60.163 36.000 18.08 10.45 43.10 2.43
3709 4573 5.151297 ACATCCAAACATGATGGGTTTTC 57.849 39.130 18.08 0.00 43.10 2.29
3710 4574 3.932545 TCCAAACATGATGGGTTTTCG 57.067 42.857 18.08 0.00 36.38 3.46
3711 4575 3.226777 TCCAAACATGATGGGTTTTCGT 58.773 40.909 18.08 0.00 36.38 3.85
3712 4576 3.254657 TCCAAACATGATGGGTTTTCGTC 59.745 43.478 18.08 0.00 36.38 4.20
3713 4577 3.005261 CCAAACATGATGGGTTTTCGTCA 59.995 43.478 12.65 0.00 36.38 4.35
3714 4578 4.500545 CCAAACATGATGGGTTTTCGTCAA 60.501 41.667 12.65 0.00 36.38 3.18
3715 4579 4.927978 AACATGATGGGTTTTCGTCAAA 57.072 36.364 0.00 0.00 36.42 2.69
3716 4580 4.927978 ACATGATGGGTTTTCGTCAAAA 57.072 36.364 0.00 0.00 36.42 2.44
3717 4581 5.269505 ACATGATGGGTTTTCGTCAAAAA 57.730 34.783 0.00 0.00 36.42 1.94
3718 4582 5.288804 ACATGATGGGTTTTCGTCAAAAAG 58.711 37.500 0.00 0.00 37.52 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
242 243 5.242393 ACTCAAACTATTGCTGCATCACTTT 59.758 36.000 1.84 0.00 36.45 2.66
243 244 4.763793 ACTCAAACTATTGCTGCATCACTT 59.236 37.500 1.84 0.00 36.45 3.16
244 245 4.155462 CACTCAAACTATTGCTGCATCACT 59.845 41.667 1.84 0.00 36.45 3.41
245 246 4.154737 TCACTCAAACTATTGCTGCATCAC 59.845 41.667 1.84 0.00 36.45 3.06
246 247 4.325972 TCACTCAAACTATTGCTGCATCA 58.674 39.130 1.84 0.00 36.45 3.07
247 248 4.952262 TCACTCAAACTATTGCTGCATC 57.048 40.909 1.84 0.00 36.45 3.91
248 249 4.337555 GGATCACTCAAACTATTGCTGCAT 59.662 41.667 1.84 0.00 36.45 3.96
249 250 3.691118 GGATCACTCAAACTATTGCTGCA 59.309 43.478 0.00 0.00 36.45 4.41
250 251 3.691118 TGGATCACTCAAACTATTGCTGC 59.309 43.478 0.00 0.00 36.45 5.25
251 252 5.634896 GTTGGATCACTCAAACTATTGCTG 58.365 41.667 0.00 0.00 36.45 4.41
252 253 4.393062 CGTTGGATCACTCAAACTATTGCT 59.607 41.667 0.00 0.00 36.45 3.91
253 254 4.391830 TCGTTGGATCACTCAAACTATTGC 59.608 41.667 0.00 0.00 36.45 3.56
254 255 6.480524 TTCGTTGGATCACTCAAACTATTG 57.519 37.500 0.00 0.00 37.92 1.90
255 256 6.710744 ACTTTCGTTGGATCACTCAAACTATT 59.289 34.615 0.00 0.00 0.00 1.73
256 257 6.147821 CACTTTCGTTGGATCACTCAAACTAT 59.852 38.462 0.00 0.00 0.00 2.12
257 258 5.465390 CACTTTCGTTGGATCACTCAAACTA 59.535 40.000 0.00 0.00 0.00 2.24
258 259 4.273480 CACTTTCGTTGGATCACTCAAACT 59.727 41.667 0.00 0.00 0.00 2.66
259 260 4.272504 TCACTTTCGTTGGATCACTCAAAC 59.727 41.667 0.00 0.00 0.00 2.93
260 261 4.447290 TCACTTTCGTTGGATCACTCAAA 58.553 39.130 0.00 0.00 0.00 2.69
261 262 4.066646 TCACTTTCGTTGGATCACTCAA 57.933 40.909 0.00 0.00 0.00 3.02
262 263 3.744238 TCACTTTCGTTGGATCACTCA 57.256 42.857 0.00 0.00 0.00 3.41
263 264 3.181516 GCATCACTTTCGTTGGATCACTC 60.182 47.826 0.00 0.00 0.00 3.51
264 265 2.744202 GCATCACTTTCGTTGGATCACT 59.256 45.455 0.00 0.00 0.00 3.41
265 266 2.483877 TGCATCACTTTCGTTGGATCAC 59.516 45.455 0.00 0.00 0.00 3.06
266 267 2.743664 CTGCATCACTTTCGTTGGATCA 59.256 45.455 0.00 0.00 0.00 2.92
267 268 2.476854 GCTGCATCACTTTCGTTGGATC 60.477 50.000 0.00 0.00 0.00 3.36
268 269 1.470098 GCTGCATCACTTTCGTTGGAT 59.530 47.619 0.00 0.00 0.00 3.41
269 270 0.874390 GCTGCATCACTTTCGTTGGA 59.126 50.000 0.00 0.00 0.00 3.53
270 271 0.592637 TGCTGCATCACTTTCGTTGG 59.407 50.000 0.00 0.00 0.00 3.77
271 272 2.247637 CATGCTGCATCACTTTCGTTG 58.752 47.619 13.10 0.00 0.00 4.10
272 273 1.200716 CCATGCTGCATCACTTTCGTT 59.799 47.619 13.10 0.00 0.00 3.85
273 274 0.806868 CCATGCTGCATCACTTTCGT 59.193 50.000 13.10 0.00 0.00 3.85
274 275 0.806868 ACCATGCTGCATCACTTTCG 59.193 50.000 13.10 0.00 0.00 3.46
275 276 3.273434 TCTACCATGCTGCATCACTTTC 58.727 45.455 13.10 0.00 0.00 2.62
325 326 4.445452 TTCCACAGTGTTAGGTACGATC 57.555 45.455 0.00 0.00 0.00 3.69
332 333 8.964476 AAAGTATATCATTCCACAGTGTTAGG 57.036 34.615 0.00 0.00 0.00 2.69
381 382 5.598417 GGCCATACAATAATTGAAACCCTCT 59.402 40.000 0.00 0.00 0.00 3.69
383 384 5.276440 TGGCCATACAATAATTGAAACCCT 58.724 37.500 0.00 0.00 0.00 4.34
1510 2107 1.031571 CCATGAACACGGGGGTCATG 61.032 60.000 27.51 27.51 38.22 3.07
1897 2522 1.730612 GTTTCCGTAGTGCAGTAAGGC 59.269 52.381 24.11 10.34 0.00 4.35
2030 2655 3.991628 AATAAATACCATGGCCCCAGT 57.008 42.857 13.04 0.00 0.00 4.00
2120 2830 3.636300 ACACCTGATGCAAGCTTGTTAAA 59.364 39.130 26.55 11.36 0.00 1.52
2540 3250 2.154074 AAACCCTCCGTTGCTCCCT 61.154 57.895 0.00 0.00 33.93 4.20
2896 3609 5.467063 CAGAGTTCTTTAAACTCACTGGTCC 59.533 44.000 17.47 0.00 46.78 4.46
2921 3634 9.647797 TTAAGACTTTATTACAGCAAGATCGAA 57.352 29.630 0.00 0.00 0.00 3.71
2980 3693 3.880490 AGTTCCTTAACGTTGTTCATGCA 59.120 39.130 11.99 0.00 40.73 3.96
2991 3704 3.963383 AAGCACACAAGTTCCTTAACG 57.037 42.857 0.00 0.00 40.73 3.18
3111 3971 6.146184 CGTGCAATTATCTAGTGGGTTATCAG 59.854 42.308 0.00 0.00 0.00 2.90
3118 3978 2.287915 GCACGTGCAATTATCTAGTGGG 59.712 50.000 34.52 0.00 41.59 4.61
3132 3992 1.074319 CCTCATTGCATTGCACGTGC 61.074 55.000 33.11 33.11 38.71 5.34
3133 3993 1.074319 GCCTCATTGCATTGCACGTG 61.074 55.000 11.66 12.28 38.71 4.49
3134 3994 1.213537 GCCTCATTGCATTGCACGT 59.786 52.632 11.66 0.00 38.71 4.49
3140 4003 5.362105 AATATTTGTGGCCTCATTGCATT 57.638 34.783 8.61 3.87 0.00 3.56
3141 4004 5.362105 AAATATTTGTGGCCTCATTGCAT 57.638 34.783 8.61 1.96 0.00 3.96
3294 4157 8.549338 TTTTTCCAACGGTTTTACTTGAAAAT 57.451 26.923 0.00 0.00 39.22 1.82
3316 4179 2.749776 CCTTCCGTTTTGCCGATTTTT 58.250 42.857 0.00 0.00 0.00 1.94
3322 4185 4.398598 CCGCCTTCCGTTTTGCCG 62.399 66.667 0.00 0.00 34.38 5.69
3336 4199 4.394712 CTCCTCACCCCACACCGC 62.395 72.222 0.00 0.00 0.00 5.68
3340 4203 1.616327 CATCCCTCCTCACCCCACA 60.616 63.158 0.00 0.00 0.00 4.17
3346 4210 2.305927 TCCTTTTGTCATCCCTCCTCAC 59.694 50.000 0.00 0.00 0.00 3.51
3357 4221 8.243961 TCCTAAAACATTCATTCCTTTTGTCA 57.756 30.769 0.00 0.00 0.00 3.58
3385 4249 4.196971 GAGTAAGACCCCGTGCATTAATT 58.803 43.478 0.00 0.00 0.00 1.40
3399 4263 3.938289 AAGAAGTCCCGTGAGTAAGAC 57.062 47.619 0.00 0.00 0.00 3.01
3403 4267 3.135994 GCAAAAAGAAGTCCCGTGAGTA 58.864 45.455 0.00 0.00 0.00 2.59
3412 4276 4.511826 TCTTTCTCCTCGCAAAAAGAAGTC 59.488 41.667 0.00 0.00 35.43 3.01
3417 4281 5.619625 ATTCTCTTTCTCCTCGCAAAAAG 57.380 39.130 0.00 0.00 0.00 2.27
3418 4282 6.391227 AAATTCTCTTTCTCCTCGCAAAAA 57.609 33.333 0.00 0.00 0.00 1.94
3419 4283 7.687941 ATAAATTCTCTTTCTCCTCGCAAAA 57.312 32.000 0.00 0.00 0.00 2.44
3420 4284 7.687941 AATAAATTCTCTTTCTCCTCGCAAA 57.312 32.000 0.00 0.00 0.00 3.68
3421 4285 8.786826 TTAATAAATTCTCTTTCTCCTCGCAA 57.213 30.769 0.00 0.00 0.00 4.85
3422 4286 8.964476 ATTAATAAATTCTCTTTCTCCTCGCA 57.036 30.769 0.00 0.00 0.00 5.10
3423 4287 9.046296 TGATTAATAAATTCTCTTTCTCCTCGC 57.954 33.333 0.00 0.00 0.00 5.03
3427 4291 9.657121 CGCTTGATTAATAAATTCTCTTTCTCC 57.343 33.333 0.00 0.00 0.00 3.71
3428 4292 9.657121 CCGCTTGATTAATAAATTCTCTTTCTC 57.343 33.333 0.00 0.00 0.00 2.87
3429 4293 8.131731 GCCGCTTGATTAATAAATTCTCTTTCT 58.868 33.333 0.00 0.00 0.00 2.52
3430 4294 7.112148 CGCCGCTTGATTAATAAATTCTCTTTC 59.888 37.037 0.00 0.00 0.00 2.62
3431 4295 6.912591 CGCCGCTTGATTAATAAATTCTCTTT 59.087 34.615 0.00 0.00 0.00 2.52
3432 4296 6.430451 CGCCGCTTGATTAATAAATTCTCTT 58.570 36.000 0.00 0.00 0.00 2.85
3433 4297 5.049405 CCGCCGCTTGATTAATAAATTCTCT 60.049 40.000 0.00 0.00 0.00 3.10
3434 4298 5.147162 CCGCCGCTTGATTAATAAATTCTC 58.853 41.667 0.00 0.00 0.00 2.87
3435 4299 4.556699 GCCGCCGCTTGATTAATAAATTCT 60.557 41.667 0.00 0.00 0.00 2.40
3436 4300 3.668656 GCCGCCGCTTGATTAATAAATTC 59.331 43.478 0.00 0.00 0.00 2.17
3437 4301 3.552068 GGCCGCCGCTTGATTAATAAATT 60.552 43.478 0.00 0.00 34.44 1.82
3438 4302 2.030274 GGCCGCCGCTTGATTAATAAAT 60.030 45.455 0.00 0.00 34.44 1.40
3439 4303 1.335496 GGCCGCCGCTTGATTAATAAA 59.665 47.619 0.00 0.00 34.44 1.40
3440 4304 0.948678 GGCCGCCGCTTGATTAATAA 59.051 50.000 0.00 0.00 34.44 1.40
3441 4305 0.179043 TGGCCGCCGCTTGATTAATA 60.179 50.000 4.58 0.00 34.44 0.98
3442 4306 1.034838 TTGGCCGCCGCTTGATTAAT 61.035 50.000 4.58 0.00 34.44 1.40
3443 4307 1.653094 CTTGGCCGCCGCTTGATTAA 61.653 55.000 4.58 0.00 34.44 1.40
3444 4308 2.045829 TTGGCCGCCGCTTGATTA 60.046 55.556 4.58 0.00 34.44 1.75
3445 4309 3.443045 CTTGGCCGCCGCTTGATT 61.443 61.111 4.58 0.00 34.44 2.57
3446 4310 4.722700 ACTTGGCCGCCGCTTGAT 62.723 61.111 4.58 0.00 34.44 2.57
3453 4317 1.748879 TAATGCAGACTTGGCCGCC 60.749 57.895 1.04 1.04 0.00 6.13
3454 4318 1.305219 TGTAATGCAGACTTGGCCGC 61.305 55.000 0.00 0.00 0.00 6.53
3455 4319 1.164411 TTGTAATGCAGACTTGGCCG 58.836 50.000 0.00 0.00 0.00 6.13
3456 4320 2.819608 TCTTTGTAATGCAGACTTGGCC 59.180 45.455 0.00 0.00 0.00 5.36
3457 4321 4.156556 TGATCTTTGTAATGCAGACTTGGC 59.843 41.667 0.00 0.00 0.00 4.52
3458 4322 5.163683 CCTGATCTTTGTAATGCAGACTTGG 60.164 44.000 0.00 0.00 0.00 3.61
3459 4323 5.675575 GCCTGATCTTTGTAATGCAGACTTG 60.676 44.000 0.00 0.00 0.00 3.16
3460 4324 4.397417 GCCTGATCTTTGTAATGCAGACTT 59.603 41.667 0.00 0.00 0.00 3.01
3461 4325 3.944015 GCCTGATCTTTGTAATGCAGACT 59.056 43.478 0.00 0.00 0.00 3.24
3462 4326 3.691118 TGCCTGATCTTTGTAATGCAGAC 59.309 43.478 0.00 0.00 0.00 3.51
3463 4327 3.691118 GTGCCTGATCTTTGTAATGCAGA 59.309 43.478 0.00 0.00 0.00 4.26
3464 4328 3.181493 GGTGCCTGATCTTTGTAATGCAG 60.181 47.826 0.00 0.00 0.00 4.41
3465 4329 2.754552 GGTGCCTGATCTTTGTAATGCA 59.245 45.455 0.00 0.00 0.00 3.96
3466 4330 3.019564 AGGTGCCTGATCTTTGTAATGC 58.980 45.455 0.00 0.00 0.00 3.56
3467 4331 3.310774 CGAGGTGCCTGATCTTTGTAATG 59.689 47.826 0.00 0.00 0.00 1.90
3468 4332 3.535561 CGAGGTGCCTGATCTTTGTAAT 58.464 45.455 0.00 0.00 0.00 1.89
3469 4333 2.935238 GCGAGGTGCCTGATCTTTGTAA 60.935 50.000 0.00 0.00 37.76 2.41
3470 4334 1.405526 GCGAGGTGCCTGATCTTTGTA 60.406 52.381 0.00 0.00 37.76 2.41
3471 4335 0.674895 GCGAGGTGCCTGATCTTTGT 60.675 55.000 0.00 0.00 37.76 2.83
3472 4336 2.093216 GCGAGGTGCCTGATCTTTG 58.907 57.895 0.00 0.00 37.76 2.77
3473 4337 4.625800 GCGAGGTGCCTGATCTTT 57.374 55.556 0.00 0.00 37.76 2.52
3483 4347 2.997315 TCAGGACCAGGCGAGGTG 60.997 66.667 9.42 0.00 43.38 4.00
3484 4348 2.681778 CTCAGGACCAGGCGAGGT 60.682 66.667 4.29 4.29 46.82 3.85
3485 4349 4.154347 GCTCAGGACCAGGCGAGG 62.154 72.222 0.00 0.00 0.00 4.63
3489 4353 2.125350 CTTCGCTCAGGACCAGGC 60.125 66.667 0.00 0.00 0.00 4.85
3490 4354 2.125350 GCTTCGCTCAGGACCAGG 60.125 66.667 0.00 0.00 0.00 4.45
3491 4355 2.125350 GGCTTCGCTCAGGACCAG 60.125 66.667 0.00 0.00 0.00 4.00
3492 4356 2.922503 TGGCTTCGCTCAGGACCA 60.923 61.111 0.00 0.00 0.00 4.02
3493 4357 2.435059 GTGGCTTCGCTCAGGACC 60.435 66.667 0.00 0.00 0.00 4.46
3494 4358 2.029844 GTGTGGCTTCGCTCAGGAC 61.030 63.158 0.00 0.00 0.00 3.85
3495 4359 2.343758 GTGTGGCTTCGCTCAGGA 59.656 61.111 0.00 0.00 0.00 3.86
3496 4360 3.114616 CGTGTGGCTTCGCTCAGG 61.115 66.667 0.00 0.00 0.00 3.86
3497 4361 2.049156 TCGTGTGGCTTCGCTCAG 60.049 61.111 0.00 0.00 0.00 3.35
3498 4362 2.355837 GTCGTGTGGCTTCGCTCA 60.356 61.111 0.00 0.00 0.00 4.26
3499 4363 2.355837 TGTCGTGTGGCTTCGCTC 60.356 61.111 0.00 0.00 0.00 5.03
3500 4364 2.356313 CTGTCGTGTGGCTTCGCT 60.356 61.111 0.00 0.00 0.00 4.93
3501 4365 2.661866 ACTGTCGTGTGGCTTCGC 60.662 61.111 0.00 0.00 0.00 4.70
3502 4366 2.943345 GCACTGTCGTGTGGCTTCG 61.943 63.158 7.71 0.00 43.16 3.79
3503 4367 1.230635 ATGCACTGTCGTGTGGCTTC 61.231 55.000 0.00 0.00 43.16 3.86
3504 4368 0.819259 AATGCACTGTCGTGTGGCTT 60.819 50.000 0.00 0.00 43.16 4.35
3505 4369 0.819259 AAATGCACTGTCGTGTGGCT 60.819 50.000 0.00 0.00 43.16 4.75
3506 4370 0.385974 GAAATGCACTGTCGTGTGGC 60.386 55.000 0.00 0.00 43.16 5.01
3507 4371 1.229428 AGAAATGCACTGTCGTGTGG 58.771 50.000 0.00 0.00 43.16 4.17
3508 4372 3.338818 AAAGAAATGCACTGTCGTGTG 57.661 42.857 0.00 0.00 43.16 3.82
3509 4373 5.470098 AGAATAAAGAAATGCACTGTCGTGT 59.530 36.000 0.00 0.00 43.16 4.49
3510 4374 5.931532 AGAATAAAGAAATGCACTGTCGTG 58.068 37.500 0.00 0.00 44.07 4.35
3511 4375 6.092259 GGTAGAATAAAGAAATGCACTGTCGT 59.908 38.462 0.00 0.00 0.00 4.34
3512 4376 6.092122 TGGTAGAATAAAGAAATGCACTGTCG 59.908 38.462 0.00 0.00 0.00 4.35
3513 4377 7.377766 TGGTAGAATAAAGAAATGCACTGTC 57.622 36.000 0.00 0.00 0.00 3.51
3514 4378 7.759489 TTGGTAGAATAAAGAAATGCACTGT 57.241 32.000 0.00 0.00 0.00 3.55
3515 4379 9.643693 ATTTTGGTAGAATAAAGAAATGCACTG 57.356 29.630 0.00 0.00 0.00 3.66
3519 4383 9.759259 GCAAATTTTGGTAGAATAAAGAAATGC 57.241 29.630 10.96 0.00 0.00 3.56
3534 4398 9.830975 AGTTAGTCATTTTTAGCAAATTTTGGT 57.169 25.926 17.09 17.09 44.64 3.67
3542 4406 9.515020 CAAAACTCAGTTAGTCATTTTTAGCAA 57.485 29.630 0.00 0.00 37.50 3.91
3543 4407 8.682710 ACAAAACTCAGTTAGTCATTTTTAGCA 58.317 29.630 0.00 0.00 37.50 3.49
3544 4408 9.516314 AACAAAACTCAGTTAGTCATTTTTAGC 57.484 29.630 0.00 0.00 37.50 3.09
3546 4410 9.710979 CGAACAAAACTCAGTTAGTCATTTTTA 57.289 29.630 0.00 0.00 37.50 1.52
3547 4411 7.220108 GCGAACAAAACTCAGTTAGTCATTTTT 59.780 33.333 0.00 0.00 37.50 1.94
3548 4412 6.691388 GCGAACAAAACTCAGTTAGTCATTTT 59.309 34.615 0.00 0.00 37.50 1.82
3549 4413 6.199393 GCGAACAAAACTCAGTTAGTCATTT 58.801 36.000 0.00 0.00 37.50 2.32
3550 4414 5.558273 CGCGAACAAAACTCAGTTAGTCATT 60.558 40.000 0.00 0.00 37.50 2.57
3551 4415 4.084537 CGCGAACAAAACTCAGTTAGTCAT 60.085 41.667 0.00 0.00 37.50 3.06
3552 4416 3.244345 CGCGAACAAAACTCAGTTAGTCA 59.756 43.478 0.00 0.00 37.50 3.41
3553 4417 3.784488 CGCGAACAAAACTCAGTTAGTC 58.216 45.455 0.00 0.00 37.50 2.59
3554 4418 2.033151 GCGCGAACAAAACTCAGTTAGT 60.033 45.455 12.10 0.00 41.49 2.24
3555 4419 2.560896 GCGCGAACAAAACTCAGTTAG 58.439 47.619 12.10 0.00 0.00 2.34
3556 4420 1.262151 GGCGCGAACAAAACTCAGTTA 59.738 47.619 12.10 0.00 0.00 2.24
3557 4421 0.028902 GGCGCGAACAAAACTCAGTT 59.971 50.000 12.10 0.00 0.00 3.16
3558 4422 0.814010 AGGCGCGAACAAAACTCAGT 60.814 50.000 12.10 0.00 0.00 3.41
3559 4423 1.144969 TAGGCGCGAACAAAACTCAG 58.855 50.000 12.10 0.00 0.00 3.35
3560 4424 1.262151 GTTAGGCGCGAACAAAACTCA 59.738 47.619 12.10 0.00 0.00 3.41
3561 4425 1.262151 TGTTAGGCGCGAACAAAACTC 59.738 47.619 20.36 0.00 33.93 3.01
3562 4426 1.301423 TGTTAGGCGCGAACAAAACT 58.699 45.000 20.36 4.13 33.93 2.66
3563 4427 1.976045 CATGTTAGGCGCGAACAAAAC 59.024 47.619 24.62 10.91 40.07 2.43
3564 4428 1.664588 GCATGTTAGGCGCGAACAAAA 60.665 47.619 24.62 7.48 40.07 2.44
3565 4429 0.109964 GCATGTTAGGCGCGAACAAA 60.110 50.000 24.62 8.09 40.07 2.83
3566 4430 0.953471 AGCATGTTAGGCGCGAACAA 60.953 50.000 24.62 12.32 40.07 2.83
3567 4431 0.953471 AAGCATGTTAGGCGCGAACA 60.953 50.000 23.51 23.51 40.88 3.18
3568 4432 0.521242 CAAGCATGTTAGGCGCGAAC 60.521 55.000 12.10 14.91 36.08 3.95
3569 4433 0.672091 TCAAGCATGTTAGGCGCGAA 60.672 50.000 12.10 0.00 36.08 4.70
3570 4434 1.079474 TCAAGCATGTTAGGCGCGA 60.079 52.632 12.10 0.00 36.08 5.87
3571 4435 1.060937 GTCAAGCATGTTAGGCGCG 59.939 57.895 0.00 0.00 36.08 6.86
3572 4436 1.651987 TAGTCAAGCATGTTAGGCGC 58.348 50.000 0.00 0.00 36.08 6.53
3573 4437 4.678509 TTTTAGTCAAGCATGTTAGGCG 57.321 40.909 0.00 0.00 36.08 5.52
3574 4438 6.531594 GGAATTTTTAGTCAAGCATGTTAGGC 59.468 38.462 0.00 0.00 0.00 3.93
3575 4439 7.035612 GGGAATTTTTAGTCAAGCATGTTAGG 58.964 38.462 0.00 0.00 0.00 2.69
3576 4440 7.830739 AGGGAATTTTTAGTCAAGCATGTTAG 58.169 34.615 0.00 0.00 0.00 2.34
3577 4441 7.775053 AGGGAATTTTTAGTCAAGCATGTTA 57.225 32.000 0.00 0.00 0.00 2.41
3578 4442 6.670695 AGGGAATTTTTAGTCAAGCATGTT 57.329 33.333 0.00 0.00 0.00 2.71
3579 4443 6.152831 GGTAGGGAATTTTTAGTCAAGCATGT 59.847 38.462 0.00 0.00 0.00 3.21
3580 4444 6.378280 AGGTAGGGAATTTTTAGTCAAGCATG 59.622 38.462 0.00 0.00 0.00 4.06
3581 4445 6.494059 AGGTAGGGAATTTTTAGTCAAGCAT 58.506 36.000 0.00 0.00 0.00 3.79
3582 4446 5.887754 AGGTAGGGAATTTTTAGTCAAGCA 58.112 37.500 0.00 0.00 0.00 3.91
3583 4447 6.835819 AAGGTAGGGAATTTTTAGTCAAGC 57.164 37.500 0.00 0.00 0.00 4.01
3584 4448 8.515414 CAGAAAGGTAGGGAATTTTTAGTCAAG 58.485 37.037 0.00 0.00 0.00 3.02
3585 4449 8.221944 TCAGAAAGGTAGGGAATTTTTAGTCAA 58.778 33.333 0.00 0.00 0.00 3.18
3586 4450 7.751646 TCAGAAAGGTAGGGAATTTTTAGTCA 58.248 34.615 0.00 0.00 0.00 3.41
3587 4451 8.631480 TTCAGAAAGGTAGGGAATTTTTAGTC 57.369 34.615 0.00 0.00 0.00 2.59
3588 4452 7.670140 CCTTCAGAAAGGTAGGGAATTTTTAGT 59.330 37.037 0.00 0.00 46.10 2.24
3589 4453 8.056407 CCTTCAGAAAGGTAGGGAATTTTTAG 57.944 38.462 0.00 0.00 46.10 1.85
3591 4455 6.918067 CCTTCAGAAAGGTAGGGAATTTTT 57.082 37.500 0.00 0.00 46.10 1.94
3604 4468 8.558973 AGAAATTAGATCACACCTTCAGAAAG 57.441 34.615 0.00 0.00 0.00 2.62
3605 4469 8.786898 CAAGAAATTAGATCACACCTTCAGAAA 58.213 33.333 0.00 0.00 0.00 2.52
3606 4470 7.094634 GCAAGAAATTAGATCACACCTTCAGAA 60.095 37.037 0.00 0.00 0.00 3.02
3607 4471 6.372659 GCAAGAAATTAGATCACACCTTCAGA 59.627 38.462 0.00 0.00 0.00 3.27
3608 4472 6.149973 TGCAAGAAATTAGATCACACCTTCAG 59.850 38.462 0.00 0.00 0.00 3.02
3609 4473 6.003326 TGCAAGAAATTAGATCACACCTTCA 58.997 36.000 0.00 0.00 0.00 3.02
3610 4474 6.317857 GTGCAAGAAATTAGATCACACCTTC 58.682 40.000 0.00 0.00 0.00 3.46
3611 4475 5.183904 GGTGCAAGAAATTAGATCACACCTT 59.816 40.000 0.00 0.00 41.40 3.50
3612 4476 4.702131 GGTGCAAGAAATTAGATCACACCT 59.298 41.667 0.00 0.00 41.40 4.00
3613 4477 4.458989 TGGTGCAAGAAATTAGATCACACC 59.541 41.667 0.00 0.00 44.15 4.16
3614 4478 5.627499 TGGTGCAAGAAATTAGATCACAC 57.373 39.130 0.00 0.00 0.00 3.82
3615 4479 5.945191 TGATGGTGCAAGAAATTAGATCACA 59.055 36.000 0.00 0.00 0.00 3.58
3616 4480 6.441093 TGATGGTGCAAGAAATTAGATCAC 57.559 37.500 0.00 0.00 0.00 3.06
3617 4481 7.123098 ACAATGATGGTGCAAGAAATTAGATCA 59.877 33.333 0.00 0.00 0.00 2.92
3618 4482 7.486647 ACAATGATGGTGCAAGAAATTAGATC 58.513 34.615 0.00 0.00 0.00 2.75
3619 4483 7.414222 ACAATGATGGTGCAAGAAATTAGAT 57.586 32.000 0.00 0.00 0.00 1.98
3620 4484 6.839124 ACAATGATGGTGCAAGAAATTAGA 57.161 33.333 0.00 0.00 0.00 2.10
3621 4485 8.407832 TCATACAATGATGGTGCAAGAAATTAG 58.592 33.333 0.00 0.00 33.59 1.73
3622 4486 8.291191 TCATACAATGATGGTGCAAGAAATTA 57.709 30.769 0.00 0.00 33.59 1.40
3623 4487 7.172868 TCATACAATGATGGTGCAAGAAATT 57.827 32.000 0.00 0.00 33.59 1.82
3624 4488 6.682113 GCTCATACAATGATGGTGCAAGAAAT 60.682 38.462 0.00 0.00 38.85 2.17
3625 4489 5.393352 GCTCATACAATGATGGTGCAAGAAA 60.393 40.000 0.00 0.00 38.85 2.52
3626 4490 4.096833 GCTCATACAATGATGGTGCAAGAA 59.903 41.667 0.00 0.00 38.85 2.52
3627 4491 3.628942 GCTCATACAATGATGGTGCAAGA 59.371 43.478 0.00 0.00 38.85 3.02
3628 4492 3.630769 AGCTCATACAATGATGGTGCAAG 59.369 43.478 0.00 0.00 38.85 4.01
3629 4493 3.379057 CAGCTCATACAATGATGGTGCAA 59.621 43.478 0.00 0.00 38.85 4.08
3630 4494 2.946990 CAGCTCATACAATGATGGTGCA 59.053 45.455 0.00 0.00 38.85 4.57
3631 4495 2.947652 ACAGCTCATACAATGATGGTGC 59.052 45.455 13.50 5.23 38.39 5.01
3632 4496 4.637091 TGAACAGCTCATACAATGATGGTG 59.363 41.667 12.65 12.65 38.85 4.17
3633 4497 4.847198 TGAACAGCTCATACAATGATGGT 58.153 39.130 0.00 0.00 38.85 3.55
3634 4498 4.880120 ACTGAACAGCTCATACAATGATGG 59.120 41.667 1.46 0.00 38.85 3.51
3635 4499 5.583457 TGACTGAACAGCTCATACAATGATG 59.417 40.000 1.46 0.00 38.85 3.07
3636 4500 5.737860 TGACTGAACAGCTCATACAATGAT 58.262 37.500 1.46 0.00 38.85 2.45
3637 4501 5.151297 TGACTGAACAGCTCATACAATGA 57.849 39.130 1.46 0.00 37.76 2.57
3638 4502 5.583457 TGATGACTGAACAGCTCATACAATG 59.417 40.000 14.61 0.00 32.98 2.82
3639 4503 5.737860 TGATGACTGAACAGCTCATACAAT 58.262 37.500 14.61 1.37 32.98 2.71
3640 4504 5.151297 TGATGACTGAACAGCTCATACAA 57.849 39.130 14.61 6.45 32.98 2.41
3641 4505 4.806640 TGATGACTGAACAGCTCATACA 57.193 40.909 14.61 12.46 32.98 2.29
3642 4506 5.354767 TGATGATGACTGAACAGCTCATAC 58.645 41.667 14.61 11.45 32.98 2.39
3643 4507 5.128335 ACTGATGATGACTGAACAGCTCATA 59.872 40.000 14.61 8.17 32.98 2.15
3644 4508 4.081031 ACTGATGATGACTGAACAGCTCAT 60.081 41.667 14.57 14.57 34.37 2.90
3645 4509 3.260128 ACTGATGATGACTGAACAGCTCA 59.740 43.478 1.46 5.82 0.00 4.26
3646 4510 3.859443 ACTGATGATGACTGAACAGCTC 58.141 45.455 1.46 0.67 0.00 4.09
3647 4511 3.977134 ACTGATGATGACTGAACAGCT 57.023 42.857 1.46 0.00 0.00 4.24
3648 4512 4.753233 AGTACTGATGATGACTGAACAGC 58.247 43.478 0.00 0.00 0.00 4.40
3649 4513 5.033507 CGAGTACTGATGATGACTGAACAG 58.966 45.833 0.00 0.00 0.00 3.16
3650 4514 4.459337 ACGAGTACTGATGATGACTGAACA 59.541 41.667 0.00 0.00 0.00 3.18
3651 4515 4.987832 ACGAGTACTGATGATGACTGAAC 58.012 43.478 0.00 0.00 0.00 3.18
3652 4516 6.753107 TTACGAGTACTGATGATGACTGAA 57.247 37.500 0.00 0.00 0.00 3.02
3653 4517 6.542370 TGATTACGAGTACTGATGATGACTGA 59.458 38.462 0.00 0.00 0.00 3.41
3654 4518 6.729187 TGATTACGAGTACTGATGATGACTG 58.271 40.000 0.00 0.00 0.00 3.51
3655 4519 6.944234 TGATTACGAGTACTGATGATGACT 57.056 37.500 0.00 0.00 0.00 3.41
3656 4520 8.581057 AATTGATTACGAGTACTGATGATGAC 57.419 34.615 0.00 0.00 0.00 3.06
3657 4521 9.249457 GAAATTGATTACGAGTACTGATGATGA 57.751 33.333 0.00 0.00 0.00 2.92
3658 4522 9.034544 TGAAATTGATTACGAGTACTGATGATG 57.965 33.333 0.00 0.00 0.00 3.07
3659 4523 9.035607 GTGAAATTGATTACGAGTACTGATGAT 57.964 33.333 0.00 0.00 0.00 2.45
3660 4524 8.032451 TGTGAAATTGATTACGAGTACTGATGA 58.968 33.333 0.00 0.00 0.00 2.92
3661 4525 8.185003 TGTGAAATTGATTACGAGTACTGATG 57.815 34.615 0.00 0.00 0.00 3.07
3662 4526 8.656849 GTTGTGAAATTGATTACGAGTACTGAT 58.343 33.333 0.00 0.00 0.00 2.90
3663 4527 7.654116 TGTTGTGAAATTGATTACGAGTACTGA 59.346 33.333 0.00 0.00 0.00 3.41
3664 4528 7.792925 TGTTGTGAAATTGATTACGAGTACTG 58.207 34.615 0.00 0.00 0.00 2.74
3665 4529 7.956420 TGTTGTGAAATTGATTACGAGTACT 57.044 32.000 0.00 0.00 0.00 2.73
3666 4530 7.903431 GGATGTTGTGAAATTGATTACGAGTAC 59.097 37.037 0.00 0.00 0.00 2.73
3667 4531 7.604545 TGGATGTTGTGAAATTGATTACGAGTA 59.395 33.333 0.00 0.00 0.00 2.59
3668 4532 6.429692 TGGATGTTGTGAAATTGATTACGAGT 59.570 34.615 0.00 0.00 0.00 4.18
3669 4533 6.841119 TGGATGTTGTGAAATTGATTACGAG 58.159 36.000 0.00 0.00 0.00 4.18
3670 4534 6.809630 TGGATGTTGTGAAATTGATTACGA 57.190 33.333 0.00 0.00 0.00 3.43
3671 4535 7.380870 TGTTTGGATGTTGTGAAATTGATTACG 59.619 33.333 0.00 0.00 0.00 3.18
3672 4536 8.586570 TGTTTGGATGTTGTGAAATTGATTAC 57.413 30.769 0.00 0.00 0.00 1.89
3673 4537 9.205719 CATGTTTGGATGTTGTGAAATTGATTA 57.794 29.630 0.00 0.00 0.00 1.75
3674 4538 7.932491 TCATGTTTGGATGTTGTGAAATTGATT 59.068 29.630 0.00 0.00 0.00 2.57
3675 4539 7.443477 TCATGTTTGGATGTTGTGAAATTGAT 58.557 30.769 0.00 0.00 0.00 2.57
3676 4540 6.814043 TCATGTTTGGATGTTGTGAAATTGA 58.186 32.000 0.00 0.00 0.00 2.57
3677 4541 7.360522 CCATCATGTTTGGATGTTGTGAAATTG 60.361 37.037 10.75 0.00 40.38 2.32
3678 4542 6.651643 CCATCATGTTTGGATGTTGTGAAATT 59.348 34.615 10.75 0.00 40.38 1.82
3679 4543 6.167685 CCATCATGTTTGGATGTTGTGAAAT 58.832 36.000 10.75 0.00 40.38 2.17
3680 4544 5.511031 CCCATCATGTTTGGATGTTGTGAAA 60.511 40.000 16.06 0.00 40.38 2.69
3681 4545 4.021280 CCCATCATGTTTGGATGTTGTGAA 60.021 41.667 16.06 0.00 40.38 3.18
3682 4546 3.510753 CCCATCATGTTTGGATGTTGTGA 59.489 43.478 16.06 0.00 40.38 3.58
3683 4547 3.258872 ACCCATCATGTTTGGATGTTGTG 59.741 43.478 16.06 3.64 40.38 3.33
3684 4548 3.509442 ACCCATCATGTTTGGATGTTGT 58.491 40.909 16.06 5.23 40.38 3.32
3685 4549 4.540359 AACCCATCATGTTTGGATGTTG 57.460 40.909 16.06 4.74 40.38 3.33
3686 4550 5.550290 GAAAACCCATCATGTTTGGATGTT 58.450 37.500 16.06 10.77 40.38 2.71
3687 4551 4.321899 CGAAAACCCATCATGTTTGGATGT 60.322 41.667 16.06 6.36 40.38 3.06
3688 4552 4.175516 CGAAAACCCATCATGTTTGGATG 58.824 43.478 16.06 2.32 41.39 3.51
3689 4553 3.831911 ACGAAAACCCATCATGTTTGGAT 59.168 39.130 16.06 0.00 36.14 3.41
3690 4554 3.226777 ACGAAAACCCATCATGTTTGGA 58.773 40.909 16.06 0.00 36.14 3.53
3691 4555 3.005261 TGACGAAAACCCATCATGTTTGG 59.995 43.478 9.62 9.62 36.14 3.28
3692 4556 4.235939 TGACGAAAACCCATCATGTTTG 57.764 40.909 0.00 0.00 36.14 2.93
3693 4557 4.927978 TTGACGAAAACCCATCATGTTT 57.072 36.364 0.00 0.00 37.52 2.83
3694 4558 4.927978 TTTGACGAAAACCCATCATGTT 57.072 36.364 0.00 0.00 0.00 2.71
3695 4559 4.927978 TTTTGACGAAAACCCATCATGT 57.072 36.364 0.00 0.00 0.00 3.21
3696 4560 4.150451 GCTTTTTGACGAAAACCCATCATG 59.850 41.667 0.00 0.00 33.78 3.07
3697 4561 4.039124 AGCTTTTTGACGAAAACCCATCAT 59.961 37.500 0.00 0.00 33.78 2.45
3698 4562 3.383185 AGCTTTTTGACGAAAACCCATCA 59.617 39.130 0.00 0.00 33.78 3.07
3699 4563 3.977427 AGCTTTTTGACGAAAACCCATC 58.023 40.909 0.00 0.00 33.78 3.51
3700 4564 5.286438 GTTAGCTTTTTGACGAAAACCCAT 58.714 37.500 0.00 0.00 33.78 4.00
3701 4565 4.674475 GTTAGCTTTTTGACGAAAACCCA 58.326 39.130 0.00 0.00 33.78 4.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.