>input_sequence_44626
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----------------------------------------------------------------------------ATGA
GTTCTCTAAGAGGGTTTGGAAATATCGCCAGAAGATGGAGAGAACTCAACGGTGCGAATTACTGGAAGGGGCTACTTGAT
CCTCTTGACGTCGACCTCCGGAAGAATATCATCAACTATGGTGAGCTCTCACAGGCAGCATACACTGGGCTCAACAGAGA
GAGAAGGTCAAGGTACGCTGGGTCTTGCCTCTTCAGACGCAAGGACTTCCTCAGCAGGGTAGATGTATCAAACCCTAATC
TATATGAGATTACGAAGTTTATATATGCAATGTGTACGGTGAGCTTGCCGGATGATTTCATGATAAAGCCGCTGTCAAAG
GCCGCATGGAGCAAGCAATCAAATTGGATGGGGTTTGTTGCTGTGGCCACCGACGAGGGTAAGGAAGTGCTCGGGAGGCG
GGATGTGGTGGTGGCATGGCGTGGGACAATACGGGTGCTAGAGTGGATGGATGACCTTGATATTTCCTTGGTGCCTGCTT
CAGAAATAGTACGACCAGGCAGTGCCCATGACCCCCGTGTTCATGGAGGATGGTTGTCCGTCTACACGAGTACTGACCCA
GGGTCTCGGTACAATAAACAGAGTGCACGATATCAGGTAATTCTTGTTATTCTTGATTCAGCATTAGTATATCACCAGAA
TCAGTATTATAGATTGCCTCATGTTCTGAAGCACAAACCTCTAAATTAGGATATAGTTGATCTTTGTGCGTGTTAAACCC
CATGATCTAATCAGTGTATAGTTTGTAATGATGCATGTGCTTGAAGTTTCAGTTTTCTTCCATTTGAAGTGAAGCAAAAG
AAAAGGAAACAAAAGA----------------------------CATGCATATTAGTCTGTCGGGAAAGCAAGTCTTGCT
TCCTGTTTTACACCAGCGAGTCGTTGGTGTTTCCGTGTTCAGCCTTACTGCACTACGGAAACATCATGATTGTTTTTAGG
CGGGGAGTGATTCCCCTTATTATCCATCTAAAGTTTAGCTTGCATAAAGACAATCATGGCACAGCACAACGTGCACTTTA
AGACAGTTTGGATTACTGGGGCCATGGTATTTATTTAATCAAGTAGATGTTGAATTG---------------------TG
CCTCTTACTAGTCATGCATATTTGACGTGGC--------------------------------CTT--------------
------------------CGGTCAAACTATTTAACAAGCTTGCATCAGGTGTTGGATGAAGTCGAAAGGCTGCAGGATCT
GTACAAGCAAGAGGAGACCAGCATCACCATAACAGGTCACAGCCTTGGGGCCGCTCTTGCAACCATTAGTGCTACCGACA
TTGTCTCCAACGGCTACAACAAGACCTGCCCGGTCTCGGCCTTCGTGTTTGGTAGCCCCAGAGTGGGCAACTCCGACTTC
CAGAAAGCATTTGACAGTGCAGAAGATCTGAGGTTGCTCCGTGTCCGGAACTCCCCTGACGTGGTCCCAAACTGGCCAAA
GCTGGGATACAGCGACGCCGGCACGGAGCTCATGATCGACACAGGGGAATCACCCTACATCAAGAGCCCTGGGAACCCCT
TAACATGGCATGATATGGAGTGTTACATGCATGGGGTTGCCGGGACGCAAGGGAGCAACGGAGGGTTTGAGTTGGAGGTT
GATCGGGACATCGCGTTGGTGAATAAACACGAAGATGCACTGAAGAAGGAGTATTCGATCCCACCGTCTTGGTGGGTGGT
TCAGAACAAAGGTATGGTGAAAGGCAAGGATGGTCGGTGGCATCTGGCCGACCATGAGGATGATGATGACTGA-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------
>chr3A_1_TraesCS3A01G235300
TCTCCGGTTTCACCGAAACTGCAAAAGATTGATTTCTTTGGATTGGATGTTGTCACCTGTATCTGTATACTGAAACTGCT
GGGCTTAGACATGCTCTTGTGAGACAGGTCCTTCAACAGGATATCCTTATGGTCAACCTCAGTTCAATGATTTGACGCCA
CTTCCTTCTGCACAGAAGAATGACTGAGGTATTTAACAAGCTACCCAATTTTTTTCTTTGGACTAGTTTGAGTGATCCAA
CGAAAGTGATGCAGCAATAGTTTGAGTGATCCAACGAAAGTGATGCAGCATGGTAGAGTATAATTTCTTTACGTTTTCAT
GATATGATCGTACCTAACACTGTGGAATGATATACTTTTTAAACTGAAAAACAGTAGGGGAAGAGG--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------GTTTCAATTATTGT
ATGGCCAGTGTCACTATCTGTAATTCTTCTGTAAAGGAACTAGGTATCA-------------------------------
---TATATATATTTATTAATCATGGGTAGTACGGGTTTTAATATCGAATCTTTTGGTTAGTTGGCATGATTTGATGGATG
CATTTCGTTTGGAAAATGTCTTGCAGACT--GATTGTGTACACAATCACTGGTGTTATTGGTCAGAGTAAAATTTTGGGC
AGAAGACACTGTTCATTGCTGGTCCCAAATGATGATTGGTGAACCCCTCTCTTTTGAACCACACAAAGATATGGTGTGTT
GCACGTTATTTGTCTTCCCTACTTGTTCGGGCTAGTGCCAGTTGGTATGAATAGAATGATAGAATTATCTTTGGGTCCTT
AGTTGATCCTTGCAAGCTTCTCTATGCTTTGAAATACAGGATGAATGGTTGCCAGGTGGGTGAGAGATTTGGTAGGGTTA
GAGAGTGACAGGGGAGCTCATCTTCAACACGCATATCAAACTGCAGCCTGCAGGTTTCATGGGGAAGCCAGCAGTCTAGC
ATGTCCTATATATATACAAAAGGTTTAAGTTGTGGGCTCTTGTAAGCAACACAAACAGAAGCATTTCCTGTCAAATATGA
GTTCTCTAAGAGGGTTTGGAAATATCGCCAGAAGATGGAGAGAACTCAACGGTGCGAATTACTGGAAGGGGCTACTTGAT
CCTCTTGACGTCGACCTCCGGAAGAATATCATCAACTATGGTGAGCTCTCACAGGCAGCATACACTGGGCTCAACAGAGA
GAGAAGGTCAAGGTACGCTGGGTCTTGCCTCTTCAGACGCAAGGACTTCCTCAGCAGGGTAGATGTATCAAACCCTAATC
TATATGAGATTACGAAGTTTATATATGCAATGTGTACGGTGAGCTTGCCGGATGATTTCATGATAAAGCCGCTGTCAAAG
GCCGCATGGAGCAAGCAATCAAATTGGATGGGGTTTGTTGCTGTGGCCACCGACGAGGGTAAGGAAGTGCTCGGGAGGCG
GGATGTGGTGGTGGCATGGCGTGGGACAATACGGGTGCTAGAGTGGATGGATGACCTTGATATTTCCTTGGTGCCTGCTT
CAGAAATAGTACGACCAGGCAGTGCCCATGACCCCCGTGTTCATGGAGGATGGTTGTCCGTCTACACGAGTACTGACCCA
GGGTCTCGGTACAATAAACAGAGTGCACGATATCAGGTAATTCTTGTTATTCTTGATTCAGCATTAGTATATCACCAGAA
TCAGTATTATAGATTGCCTCATGTTCTGAAGCACAAACCTCTAAATTAGGATATAGTTGATCTTTGTGCGTGTTAAACCC
CATGATCTAATCAGTGTATAGTTTGTAATGATGCATGTGCTTGAAGTTTCAGTTTTCTTCCATTTGAAGTGAAGCAAAAG
AAAAGGAAACAAAAGA----------------------------CATGCATATTAGTCTGTCGGGAAAGCAAGTCTTGCT
TCCTGTTTTACACCAGCGAGTCGTTGGTGTTTCCGTGTTCAGCCTTACTGCACTACGGAAACATCATGATTGTTTTTAGG
CGGGGAGTGATTCCCCTTATTATCCATCTAAAGTTTAGCTTGCATAAAGACAATCATGGCACAGCACAACGTGCACTTTA
AGACAGTTTGGATTACTGGGGCCATGGTATTTATTTAATCAAGTAGATGTTGAATTG---------------------TG
CCTCTTACTAGTCATGCATATTTGACGTGGC--------------------------------CTT--------------
------------------CGGTCAAACTATTTAACAAGCTTGCATCAGGTGTTGGATGAAGTCGAAAGGCTGCAGGATCT
GTACAAGCAAGAGGAGACCAGCATCACCATAACAGGTCACAGCCTTGGGGCCGCTCTTGCAACCATTAGTGCTACCGACA
TTGTCTCCAACGGCTACAACAAGACCTGCCCGGTCTCGGCCTTCGTGTTTGGTAGCCCCAGAGTGGGCAACTCCGACTTC
CAGAAAGCATTTGACAGTGCAGAAGATCTGAGGTTGCTCCGTGTCCGGAACTCCCCTGACGTGGTCCCAAACTGGCCAAA
GCTGGGATACAGCGACGCCGGCACGGAGCTCATGATCGACACAGGGGAATCACCCTACATCAAGAGCCCTGGGAACCCCT
TAACATGGCATGATATGGAGTGTTACATGCATGGGGTTGCCGGGACGCAAGGGAGCAACGGAGGGTTTGAGTTGGAGGTT
GATCGGGACATCGCGTTGGTGAATAAACACGAAGATGCACTGAAGAAGGAGTATTCGATCCCACCGTCTTGGTGGGTGGT
TCAGAACAAAGGTATGGTGAAAGGCAAGGATGGTCGGTGGCATCTGGCCGACCATGAGGATGATGATGACTGATCCTTTT
ACGTGATGCAATTCAGTGCGACAGCTGGGCAACAAGTTGCAACCAACGAGCTTTCCTTTAGAACATGGGAAATATTCTGC
ATG-TCTTCTTTTAACTGTTTGAGAGTAAAGAAATGCATCCTGTTATGTTCCAACTCATATTTTTCAGTGAAGT--TATT
TGCTTTCGGGACCAGTGAGTTTAAAGAACTCTGTTCGATCTTGCTGTAATAAAGTCTTAAATTTGTTTAGCTGTGCCTGT
GTGACATTTCCCTGCATGAACAACGTTAAGGAACTTGTGTGCTTTGTGC-ATTATTTGATTATTTCCTAATAACAAGTAA
CATGCACATAGTCGCATGTTAGGTGTATCAATT-----------------------------------------------
--------------------------------------------------------------------------------
-------------------TTCCCGGTATCAAAGGTGTTTTACTCATTATCTGATAACCCACTAGATAATTGCA---CGT
GCAATGCAATGAGGCCACAAATATTTTGTACATAATCACCGTGATTTAGCTGTCGTTTTAGTATGAATGTATATGTCCGA
AAATGGACTTAGCTGCTAATTAAATCAGTACTTATTGATTTACCAAAGTAAATTTGGTAAGCCAATAAGTGAGGTGATTT
TCAAGTAAAACCGTTGGAAAAAATCGGCAAAACGGAAGGCGGT-GTGGGGTGAGGAGGGATGACAAAAGGAATGAATGTT
TTAGGAGAAATTAATGCACGGGGTCTTACTCACGGGACTTCTTTTTGCGAGGAGAAAGAGAATTTATTAATCAAGCGGCG
GCCAAGTCTGCATTACAAAGATCAGGCACCTCGCCTGGTCCTGAGCGAAGCCACACGACAGTGCATTTCTTTATTCTACC
AAAATTTGCTAAAAATGACTAACTGAGTTTTGTTCGCGCCTAACATGCTTGACTAAAAATTCCCTACCTTTCTGAAGGTG
TGATCTAATTTCTTGCACCATCATTGTATGAGCTGTTCAGTCATCATCAGTACTCGTAATCAATTTCACAACATCCAAAC
ATGATGGGTTTTCGTCAAAAAGCTAAC
>chr3B_1
TCTCCAGTTTCACCGAAACTGCAAAAGATTGATTTCTTTGGATTGGATGTTGTCACCTGTATCTGTATACTGAAACTGCT
GGGCTTAGACATGCTCTTGTGAGACAGGTCGTTCAACAGGATATCCTTATGGTCAACCTCAGTTCAATGATTTGATGCTA
CTTCCTTCTGCACAGAAGAATGACTGAGGTATTTAACAAGCTACCTAAATTTTTTCTTTGGACTAGTTTGAGTGATCCAA
CA----------------------------------AAAGTGATGCAGCATGGTAGAGTATAATTTCTTTACGTTTTCAT
GATATAATCGTATCTAACACTGTGGAATGATATACTTTTTTAACTGAAAAACAGTAGGGGAGGGGGGGAGGGGGGGAGAG
GGGGGGCACCATATAAAATGCTTTATGTTGCTCTATTGATCCTATTTCCTCAGTAAATTTGAATTTATTCTTTATGAGGT
GCTAAATCATGTTCCTTGTCTGATCATAGAACCAAAACTTAGTTTGATCAAGTTTGGAAATTCTTAATTGCTTTATTTAC
ATATCTGTTACATAATGTGAGCTTATACGTGATTAAATGTTGCTATTGGCTGCTGGGAATTAGTAGGCCAAGACTTGGTA
GTAAGTTCTGACTACCTTAATAGATTGTACTTTCGAAGTGATAGGCAGATGCTGGGCTGTATACAGATAAGAAAACCTCT
ATAATTGAAAAACCTTGAGCCATCTAGACCTGTCTTAACCTAAAATTGAGGGAATCTTTAGGTGGAATAGATTTACTGCT
AAGCTCACCTTATTTTTGCAATTTTCTTACCTGATTAATGTGGTTTGCCATCTTTTTCATACAGCAACTTTCCGGGAAGC
ATGCTCTCAATAACAGGGAAATGATGGTTGGATCCTACACTGGTGGTTATGTCTTTCCAAACATAAGTTTCAATTATTGT
ATGGCCAGTGTCACTATCTGTAATTCTTCTGTTAAGGAACTAGGTATCA-------------------------------
---TATATATATTTATTAATCATGGGTAGTACGGGTTTTAATATCGAATCTTTTGGTTAGTTGGCATGATTTGATGGATG
CATCTCGTTTGGAAAATGTCTTGCAGACT--GATTGTGTACACAATCACTGGTGTCATTGGTCAGAGTAAAATTTTGGGC
AGAAGACACTGTTCATTGCTGGTCCCAAATGATGATTGGTGAACCCCTGTCTTTTGAACCACACAAAGATATGGTGTGTT
GCACGTTATTTGTCTTCCCTACTTGTTCAGGCTAGTGCCAGTTGGTATGAATAGAATGATAGAATTATCTTTGGGTCCTT
AGTTGATCCTTGCAAGCTTCTCTATGCTTTGAAATACAGGATGAATGGTTGCCAGGTGGGTGAGAGATTTGGTAGGGTTA
GAGAGTGACAGGGGAGCTCTTCTTCAACACGCATATCAAACTGCAGCCTGCAGGTTTCATGGGGAAGCCAGCAGCCTAGC
ATGTCCT--ATATATACAAAAGGTTTAAGTTGTGGGCTCTTGTAAGCAACACAAACAGAAGCATTTCCTGTCAAATATGA
GTTCTCTAAGAGGGTTTGGAAATATCGCCAGAAGATGGAGAGAACTCAACGGTGCGAATTACTGGAAGGGGCTACTTGAT
CCTCTTGACATCGACCTCCGGAAGAATATCATCAACTACGGTGAGCTCTCACAGGCAGCATACACTGGGCTCAACAGAGA
GAGAAGGTCAAGGTATGCTGGGTCTTGCCTCTTCAGACGCAAGGACTTCCTCAGCAGGGTAGATGTATCAAACCCTAATC
TGTATGAGATTACGAAGTTTATATATGCAATGTGTACGGTGAGCTTGCCGGATGATTTCATGATAAAGCCGCTGTCAAAG
GCCGCATGGAGCAAGCAATCAAATTGGATGGGGTTTGTTGCTGTGGCCACCGACGAGGGTAAGGAGGTGCTCGGGAGGCG
GGATGTGGTGGTGGCATGGCGTGGGACAATACGGGTGCTAGAGTGGATGGATGACCTTGATATTTCCTTGGTGCCTGCTT
CAGAAATAGTACGACCAGGCAGTGCCAATGACCCCCGTGTTCATGGAGGATGGTTGTCTGTCTACACGAGTACTGACCCA
GGGTCTCGGTACAATAAACAGAGTGCACGGTATCAGGTAATTCTTGTTATTCTTGATTCAGCATTTGTGTATCACCAGAA
TCAGTATTATAGATTGCCTCATGTTCTGAAGCACAAACCTCTAAATTAGGATATAATTGATCTTTGTGCGTGTTAAACCC
CATGATCTAATCAGTGTATAGTTTGTAATGATGCATGTGCTTGAAGTTTCAGTTTTCTTCCATTTGAAGTGAAGCAAAAG
AAAAGGAAACAAAAGAGTATATCAGTTGTTTGCTTATGCTTGTCCATGCATATTAGTCTGTCGGGAAAGCAAGTCTTGCT
TCCTGTTTTACACCAGCGAGTCGTTGGTGTTTCCGTGTTCAACCTTACTGCACTACGGAAACATCATGATTGTTTTTAGG
CGGGGAGTGATTCCCCTTATTATCCATCTAAAGTTTAGCTTGCATAAAGACAATCATGGCACAGCACAACGTGCACTTTA
AGACAGTTTGGATTGCTGGGGCCATGGTATTTGTTTAATCAAGTAGATGTTGAATTGTGTAGTCCTTGCATGCATCCCTG
CCTCTTACTAGTCATGCATATTTGACGTGGCTTTTTAGTTTTGCTCATCATGGGGAAATGATCCTT--------------
------------------CGGTCAAACTAATTAACAAGCTTGCATCAGGTGTTGGATGAAGTCGAAAGGCTGCAAGATCT
GTACAAGCAAGAGGAGACCAGCATCACCATAACAGGTCACAGCCTTGGGGCCGCTCTTGCAACCATTAGTGCTACCGACA
TTGTCTCCAACGGCTACAACAAGACCTGCCCAGTCTCGGCCTTCGTGTTTGGTAGCCCCAGAGTGGGCAACTCCGACTTC
CAGAAAGCATTTGACAGTGCAGAAGATCTGAGGTTGCTCCGTGTCCGGAACTCCCCTGACGTGGTCCCAAACTGGCCAAA
GCTGGGATACAGCGACGCCGGCACGGAGCTCATGATCGACACAGGGGAATCACCCTACATCAAGAGCCCTGGGAACCCCT
TAACATGGCATGATATGGAGTGTTACATGCATGGGGTTGCCGGGACGCAGGGGAGCAACGGAGGGTTTGAGTTGGAGGTT
GATCGGGACATAGCGTTGGTGAATAAACACGAAGATGCACTGAAGGAGGAGTATTCGATTCCACCGTCTTGGTGGGTGGT
TCAGAACAAAGGTATGGTGAAAGGCAAGGATGGTCGGTGGCATCTGGCCGACCATGAGGATGATGATGACTGATCCTTTT
ACGTGATGCAATTCAGTGCGACAGCTGGGCAACAAGTTGCAACCAACGAGCTTTCCTTTAGAACATGGGAAATATTCTGC
ATG-TCTTCTTTAAACTGTTTGAGAGTAAAGAAATGCATCCTGTTATGTTCCAGCTCATATTTTTCAGTGAAGTGTTATT
TGCTTTCGAGACCAGTGAGTTTAGAGAACTCTGATCGATCTTGCCGTAATAAAGTCTTAAATTTGTTTAGCTGTGCCTGT
GTGACATTTCCCCGCATGAACAATGTTGAGGAACTTGTGTGC-TTGTGC-ATTATTTGATTATTTCCTAATAACAAGTAA
CATGCACATAGTCGCATGTTAGGTGGGTCATGCGGCGAGTAGTTAGCGTGTGAGAAACTGGGTGGAGTTGGGGTTATGTA
ACTTTTGTAACCGCCAACGTGGAGGGGCTTCTTTGGCTTCTTTTCCCATCCTCCTCTTTAATACATAGTATGCACACTCG
TGTGTATTCGAGAAAAAAATTCCCGGTATCAAAGGTGTTTTACTCATTATTTGATAATCCACTAGATAATTATTGCCCGT
GCGTTGCAACGAGGCCACAAATATTTTGTACATAATCACCGTGATTTATCTGTCATTTTAGTATGAATGAATATGTCCGA
AAATGGACTTAGCTGCCAACTAAATCAGTACTTATTGATTTACCAAAGTAAATTTGGTCACCCAATAAGTGAGGTG----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------
>chr3D_1
TCTCCAGTTTCAGCGAAACTGCAAAATATTGATTTCTTTGGATTGGATGTTGTCACCTGTATTTGTATACTGAAACTGCT
GGGCTTATACATGCTCTCGTGAGACAGATCCTTCAACAGGATATCCTTAGGGTCAACCTCAGTTCAATGATTTGACGCTA
CTTCCTCCTGCACAGAAGAATGACTGAGGTATTTAACAAGCTACCTAAAAAATTTCTTTGGACTAGTTTGAGTGATCCAA
CG----------------------------------AAAGTGATGCAGCATGGTAGAGTAGAAGTTCTTTACGTTGTCAT
GATATAACCGTATCTAACACTGTGGAATTATATACTTTTTTAACTGAAAAACAGTGGGGGAGGGAGGGGGCAACT-----
----------ATATAAAATGCTTTATGATGCTCTATTGATCCTATTTCCTCAGTAAATTTGAATTTATTCTTTATGAGAT
GCTAAATCATGTTCCTTGTCTGATCATAGAACCAAAGCTTAGTTTGATCAAGTTAAGAAATTCTTAATTGCTTTATTTGC
ATATCTGTTACATAATGTGAGCTTATACGTGATTAAATGTTGCTATTGCCTGCTGGGAATTAGTAGGCCAAGACTTGGTA
GTAAGTTCTGACTACCTTAATAGATTGTACTTTCGAAGTGATAGGCAGATGCTGGGCTGTATGCAGATAAGAAAACTTCT
ATAATTGAAAAACCTTGAGCCATCTAGACCTGTCTTAACCTAAAATGGAGGGTATCTTTAGGTGGAATGGAGTTACTGCT
AAGCTC----TATTTTTGCAATTTTCTTACCTGATTAATGTGGTTTGCCATCTTTTTCATACAGAAACTTTCCGGGAAGC
ATGCTCTCAATAACAGGGAAATGATGGCTGGATCCTACACTGGTGGTTATGTCTTTCTAAACATAAGTTTCAATTATTGT
ATGGCCAGTGTCACTATCTGTAATTCTTCTGTGAAGGAACTAGGTATCATATATATATATATATATATATATATATATAT
ATATATATATATTTATTAATCATGGGTAGTACGGGTTTTAATATCGAATCTTTTGGTTAGTTGGCATGATTTGATGGATG
CATTTCGTTTGGAAAATGTCTTACAGACTCTGATTGTGTACACAATCACTGGTGTTATTGGCCAGAGTAAAATCTTGGGC
AAAAGACACTGTTCATTGCTGGTCCCAAATGATGATTGGTGAACCCCTCTCTTTTGAACCACACAAAGATATGGTGTGTT
GCACGTTATTTGTCTTCCCTACTTGTTCAGGCTAGTGCCAGTTGGTATGAATAGAATGATAGAATTATCTTTGGGTCCTT
AGTTGATCCTTGCAAGCTTCTCTATGCTTTGAAATACAGGATGAATGGTTGCCAAGTGGGTGAGAGATTTGGT-GGGGTA
GAGAGTGACAGGGGAACTCATCTTCAACACGCATATCAAACTGCAGCCTGCAGGTTTCCTGGGGAAGCCAGTAGCCTAGC
ATGTCCT--ATATATACAAAAGGGTTTAGTTGTGGGCTCTTGTAAGCAACACTAACAGAAGCATTTCCTGTCAAATATGA
GTTCTCTAAGAGGGTTTGGAAATATCGCCAGAAGATGGAGAGAACTCAATGGTGCGAATTACTGGAAGGGGCTACTTGAT
CCTCTTGACGTCGACCTCCGGAAGAATATCATCAACTACGGTGAGCTCTCACAGGCAGCATACACTGGGCTCAACAGAGA
GAGAAGGTCAAGGTACGCTGGGTCTTGCCTCTTCAGACGCAAGGACTTCCTCAGCAGGGTAGATGTATCAAACCCTAATC
TGTATGAGATTACGAAGTTTATATATGCAATGTGTACCGTGAGCTTGCCGGATGATTTCATGATAAAGCCACTGTCAAAG
GCCGCATGGAGCAAGCAGTCAAATTGGATGGGGTTTGTTGCTGTGGCCACCGACGAGGGTAAGGAAGTGCTCGGGAGGCG
GGATGTGGTGGTGGCATGGCGTGGGACAATACGGGTGCTAGAGTGGATGGATGACCTTGATATTTCCTTGGCGCCTGCTT
CAGAAATAGTACGACCAGGGAGTGCCAATGATCCCCGTGTTCATGGAGGATGGTTGTCCGTCTACACGAGTACTGACCCA
GGGTCTCGGTACAATGAACAGAGTGCACGATATCAGGTAATTCTTGTTATTCTTGATTCAGCATTAGTATATCACCAGAA
TCAATATTATAGATTGCCCCATGTTCTGAAGCACAAACCTCTACATTAGGATATAGTTGATCTTTGTGCGTGTTAAACCC
CATGATCTAATCAGTGTATAGTTTGTAATGATGCATGTGCTTTAAGTTTCGGTTTTCTTCCATTTGAAGTGAAGCAAAAG
AAAAGGAAACAAAAGAGTATATCAGTTGTTTGCTTATGCTTGTCCATGCATATTAGTCTGTCAGGAAAGCAAGTCTTGCT
TCCTGCTTTACACCAGCGAGTCGTTGGTGTTTCTCTGTTCAACCTTACTGCACTACGGAAACATCATGATTGTTTTTAGG
CGGGGAGTGATTCCACTTATTATCCATCTAAAGTTTAGCTTGCATAAAGACAATCATGGCACAGCACAATGTGCACTTTA
AGACAGTTTGGATTGCTGGGGCCATGGTATTTGTTTAATCAAGTAGATGTTGAATTGTGTAGTCCTTGCATGCATCCCTG
CCTCTTACTAGTCATGCATATTCGACGTGGC--------------------------------TTTTTAGTTTTGCTCAT
CACAGGGAAATGATCCTTCGGTCAAACTAATTAACAAGCTTGCATCAGGTGTTGGATGAAGTCAAAAGGCTGCAGGATCT
GTACAAGCAAGAGGAGACCAGCATCACCATAACAGGTCACAGCCTTGGGGCCGCTCTTGCAACCATTAGTGCTACCGACA
TTGTCTCCAACGGCTACAACAAAACCTGCCCGGTCTCGGCCTTCGTGTTTGGTAGCCCCAGAGTGGGCAACTCCGACTTC
CAGAAAGCATTTGACAGTGCGGAAGATCTGAGGTTGCTCCGTGTCCGGAACTCCCCTGACGTGGTCCCAAACTGGCCAAA
GCTGGGATACAGCGACGCCGGCACAGAGCTCATGATCGACACAGGGGAATCACCCTACATCAAGAGCCCTGGGAACCCCT
TAACATGGCATGATATGGAGTGTTACATGCATGGGGTTGCCGGGACGCAGGGGAGCAACGGAGGGTTTGAGTTGGAGGTT
GATCGGGACATCGCGTTGGTGAATAAACACGAAGATGCACTGAAGAAGGAGTATTCGATTCCACCGTCTTGGTGGGTGGT
TCAGAACAAAGGTATGGTGAAAGGCAAGGATGGTCGGTGGCATCTGGCCGACCATGAGGATGATGATGACTGATCCTTTT
ACGTGATGCAATTCAGTGCGACAGCTGGGCAACAAGTTGCAACCAACGAGCTTTCCTTGAGAACATGGCAAATATTCTGC
ATTATCTTCTTTTAACTGTTTGAGAGTAAAGAAATGCATCCTGTTATGTTCGAACTCATATTTTTCAGTGAACTGTTATT
-GCTTTCGAGACCAGTGAGTTTAAAGAACTCTGATCGATCTTGCTGTAATAAAGTCTTAATTTTTTTTAGCTGTTCATGT
GTGACATTTCCCCGCATGAACAATGTTAAGGAACTTGTGTGC-TTTGTGTATTATTTGATTATTTCCTAATAACAAGTAA
CATGCACACAGTATCATGTTAGGTGTATCAATT-----------------------------------------------
--------------------------------------------------------------------------------
-------------------TTCCCAGTATCAAACGTGTTTTACTCATTATTTGATAATCCACTAGATAATTATTGCCCGT
GCGTTGAAATGAGGCCACAAATATTTTGTACATAAGGACCGTGATTTATCTGCCATCTTAGTATGAATGAATATGTCTGA
AAATGGACTTAGCTGCCAATTAAATCAGTACTTATTGATTTACCAAAGTAAATTTGGTAAGCCAATAAGTGAGGTGGTTT
TCGAGTAAAACCGTTGGGGAAAATTGGCAAAACCGAAAACGGCCGTGGGTTGAGGAGGGAGGACGAAAGGAATGAATGTT
TTAGGAGAGATTAATGCACGGG-TCTCACTCACGGTACTT----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------
>SNPs
-----S--------------------------------------------------------------------------
------------------------------------------------------------------------------S-
---------------------------------------------S--S-------------------------------
--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------------------------
-----S------S---------------------------S--------------------S-S----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------S-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------S---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------S-----
-------SS-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------S-----------------------------------------
--------------------------------------------------------------------------------
-S------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------S-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------S--------------------------------------
--------------------------------------------------------------------------------
--------------S-----------------S-----------------------------------------------
--------------------------------------------------------------------------------
-----------------------------S--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------S------------------------------
-----------------------------------------------------------S--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------S------------------------S----------------------------------------------
------------S----------S------------------S-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------S------S-------------SSS------
--SS--------------------------------------------S-----S--------------S----------
----------------S-----------------------------------------------------------S---
--S--------------SS-----S--------S---SS---S------S----------S---S---------------
--------S-------------S---S--------S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1515
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------TTCATGGGGAAGCCAGCAGT-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------
>reverse_2522
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------GCCTTACTGCACTACGGAAAC------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------
>forward_1528
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------CCAGCAGTCTAGC
ATGTCCTA------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------
>reverse_3250
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------AGGGAGCAACGGAGGGTTT------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------
>forward_2522
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------CGTTGGTGTTTCCGTGTTCAG--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------
>reverse_4421
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------AACTGAGTTTTGTTCGCGCC----------------------------------------
--------------------------------------------------------------------------------
---------------------------
