Multiple sequence alignment - TraesCS3A01G235100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G235100 chr3A 100.000 3523 0 0 1 3523 438636095 438639617 0.000000e+00 6506.0
1 TraesCS3A01G235100 chr3D 92.443 2104 105 27 657 2725 326234172 326232088 0.000000e+00 2955.0
2 TraesCS3A01G235100 chr3D 90.323 589 30 8 1 563 326234763 326234176 0.000000e+00 747.0
3 TraesCS3A01G235100 chr3D 88.191 398 41 6 2908 3303 326232023 326231630 1.480000e-128 470.0
4 TraesCS3A01G235100 chr3D 92.632 95 6 1 3430 3523 506754438 506754344 6.130000e-28 135.0
5 TraesCS3A01G235100 chr4B 88.623 167 18 1 2723 2889 86080839 86081004 5.960000e-48 202.0
6 TraesCS3A01G235100 chr1A 87.791 172 21 0 2723 2894 570922634 570922805 5.960000e-48 202.0
7 TraesCS3A01G235100 chr1A 90.291 103 9 1 3421 3523 31543360 31543461 2.210000e-27 134.0
8 TraesCS3A01G235100 chr1B 87.283 173 22 0 2723 2895 442201808 442201636 7.710000e-47 198.0
9 TraesCS3A01G235100 chr7D 86.982 169 22 0 2727 2895 592727574 592727406 1.290000e-44 191.0
10 TraesCS3A01G235100 chr7D 76.573 286 49 14 1925 2201 597965975 597966251 1.320000e-29 141.0
11 TraesCS3A01G235100 chr7D 94.318 88 5 0 3436 3523 217844657 217844570 6.130000e-28 135.0
12 TraesCS3A01G235100 chr7D 84.848 66 10 0 1681 1746 597569561 597569496 2.270000e-07 67.6
13 TraesCS3A01G235100 chr7D 97.297 37 1 0 647 683 250328720 250328756 2.940000e-06 63.9
14 TraesCS3A01G235100 chr5B 86.705 173 21 2 2723 2894 659588566 659588395 1.290000e-44 191.0
15 TraesCS3A01G235100 chr5B 94.565 92 5 0 3432 3523 133483479 133483570 3.670000e-30 143.0
16 TraesCS3A01G235100 chr5A 88.125 160 19 0 2724 2883 447634888 447635047 1.290000e-44 191.0
17 TraesCS3A01G235100 chr5A 88.125 160 19 0 2724 2883 447642001 447642160 1.290000e-44 191.0
18 TraesCS3A01G235100 chr6D 86.207 174 24 0 2723 2896 410373609 410373782 4.640000e-44 189.0
19 TraesCS3A01G235100 chr6B 86.705 173 19 3 2723 2894 29804341 29804510 4.640000e-44 189.0
20 TraesCS3A01G235100 chr7A 95.506 89 4 0 3435 3523 90724146 90724058 3.670000e-30 143.0
21 TraesCS3A01G235100 chr7A 76.678 283 48 14 1928 2201 690194970 690194697 1.320000e-29 141.0
22 TraesCS3A01G235100 chr2D 95.455 88 4 0 3436 3523 480207059 480207146 1.320000e-29 141.0
23 TraesCS3A01G235100 chr4D 94.444 90 5 0 3434 3523 424425273 424425362 4.740000e-29 139.0
24 TraesCS3A01G235100 chr4D 92.632 95 6 1 3430 3523 121265486 121265392 6.130000e-28 135.0
25 TraesCS3A01G235100 chr7B 75.972 283 50 14 1928 2201 676210225 676209952 2.850000e-26 130.0
26 TraesCS3A01G235100 chr7B 90.323 62 6 0 1685 1746 676424767 676424828 8.110000e-12 82.4
27 TraesCS3A01G235100 chr1D 89.524 105 8 3 3419 3523 243761711 243761812 2.850000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G235100 chr3A 438636095 438639617 3522 False 6506.000000 6506 100.000 1 3523 1 chr3A.!!$F1 3522
1 TraesCS3A01G235100 chr3D 326231630 326234763 3133 True 1390.666667 2955 90.319 1 3303 3 chr3D.!!$R2 3302

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
340 345 0.449388 GCACATCTGTTGGCTAGTGC 59.551 55.0 0.0 0.0 44.31 4.40 F
2012 2079 0.034337 TGCCCAAGTACCTGAACGAC 59.966 55.0 0.0 0.0 0.00 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2101 2168 0.033504 GAGCCTGTTGACCTCGTTGA 59.966 55.0 0.0 0.0 0.0 3.18 R
3347 3449 0.034896 GGCACTCGAAAGGACAAGGA 59.965 55.0 0.0 0.0 0.0 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 6.596106 TCCAGAATTTGCATTTCCATTTGATG 59.404 34.615 6.35 0.00 0.00 3.07
93 94 6.091713 ACCAAAGTCTATATTTTTGTCGTCCG 59.908 38.462 0.00 0.00 31.55 4.79
105 106 8.637281 ATTTTTGTCGTCCGAAATAAGTTTTT 57.363 26.923 0.00 0.00 0.00 1.94
307 312 7.678194 AACATTTATATAACATTGTGTGCGC 57.322 32.000 0.00 0.00 0.00 6.09
316 321 2.819608 ACATTGTGTGCGCCTTTCTATT 59.180 40.909 4.18 0.00 0.00 1.73
340 345 0.449388 GCACATCTGTTGGCTAGTGC 59.551 55.000 0.00 0.00 44.31 4.40
402 408 8.889849 TTCTTAATTTAGAACATTTGTAGCGC 57.110 30.769 0.00 0.00 0.00 5.92
413 422 5.212194 ACATTTGTAGCGCTTTTTGTACAG 58.788 37.500 18.68 3.52 0.00 2.74
415 424 4.725556 TTGTAGCGCTTTTTGTACAGAG 57.274 40.909 18.68 0.00 0.00 3.35
423 432 5.671329 GCGCTTTTTGTACAGAGATAACCAG 60.671 44.000 0.00 0.00 0.00 4.00
534 560 7.913674 TGTATATGCCACGATGCAATTAATA 57.086 32.000 7.62 2.57 45.84 0.98
544 570 5.709631 ACGATGCAATTAATATATGTGCCCA 59.290 36.000 6.61 0.00 34.25 5.36
548 574 5.153513 GCAATTAATATATGTGCCCACGTG 58.846 41.667 9.08 9.08 0.00 4.49
549 575 5.278266 GCAATTAATATATGTGCCCACGTGT 60.278 40.000 15.65 0.00 0.00 4.49
563 589 4.754618 GCCCACGTGTGATTTGATATCATA 59.245 41.667 15.65 1.78 0.00 2.15
564 590 5.412594 GCCCACGTGTGATTTGATATCATAT 59.587 40.000 15.65 7.33 0.00 1.78
565 591 6.593770 GCCCACGTGTGATTTGATATCATATA 59.406 38.462 15.65 0.00 0.00 0.86
566 592 7.413000 GCCCACGTGTGATTTGATATCATATAC 60.413 40.741 15.65 7.32 0.00 1.47
567 593 7.819415 CCCACGTGTGATTTGATATCATATACT 59.181 37.037 15.65 0.00 0.00 2.12
568 594 9.208022 CCACGTGTGATTTGATATCATATACTT 57.792 33.333 15.65 0.00 0.00 2.24
570 596 9.424319 ACGTGTGATTTGATATCATATACTTCC 57.576 33.333 6.17 0.00 0.00 3.46
571 597 9.645059 CGTGTGATTTGATATCATATACTTCCT 57.355 33.333 6.17 0.00 0.00 3.36
578 604 7.921041 TGATATCATATACTTCCTCCATCCC 57.079 40.000 0.00 0.00 0.00 3.85
579 605 7.430007 TGATATCATATACTTCCTCCATCCCA 58.570 38.462 0.00 0.00 0.00 4.37
580 606 8.076251 TGATATCATATACTTCCTCCATCCCAT 58.924 37.037 0.00 0.00 0.00 4.00
581 607 9.607333 GATATCATATACTTCCTCCATCCCATA 57.393 37.037 0.00 0.00 0.00 2.74
582 608 9.973880 ATATCATATACTTCCTCCATCCCATAA 57.026 33.333 0.00 0.00 0.00 1.90
583 609 7.496346 TCATATACTTCCTCCATCCCATAAC 57.504 40.000 0.00 0.00 0.00 1.89
584 610 7.022496 TCATATACTTCCTCCATCCCATAACA 58.978 38.462 0.00 0.00 0.00 2.41
585 611 7.684186 TCATATACTTCCTCCATCCCATAACAT 59.316 37.037 0.00 0.00 0.00 2.71
586 612 8.992349 CATATACTTCCTCCATCCCATAACATA 58.008 37.037 0.00 0.00 0.00 2.29
587 613 7.888514 ATACTTCCTCCATCCCATAACATAA 57.111 36.000 0.00 0.00 0.00 1.90
588 614 6.192970 ACTTCCTCCATCCCATAACATAAG 57.807 41.667 0.00 0.00 0.00 1.73
589 615 5.911178 ACTTCCTCCATCCCATAACATAAGA 59.089 40.000 0.00 0.00 0.00 2.10
590 616 6.564152 ACTTCCTCCATCCCATAACATAAGAT 59.436 38.462 0.00 0.00 0.00 2.40
591 617 6.627087 TCCTCCATCCCATAACATAAGATC 57.373 41.667 0.00 0.00 0.00 2.75
592 618 6.334296 TCCTCCATCCCATAACATAAGATCT 58.666 40.000 0.00 0.00 0.00 2.75
593 619 6.794493 TCCTCCATCCCATAACATAAGATCTT 59.206 38.462 13.56 13.56 0.00 2.40
594 620 7.961431 TCCTCCATCCCATAACATAAGATCTTA 59.039 37.037 17.32 17.32 0.00 2.10
595 621 8.776119 CCTCCATCCCATAACATAAGATCTTAT 58.224 37.037 20.20 20.20 36.27 1.73
623 649 9.645059 AGATCCAATATACTCACGTATTGAATG 57.355 33.333 7.82 0.00 39.50 2.67
624 650 9.424319 GATCCAATATACTCACGTATTGAATGT 57.576 33.333 7.82 0.00 39.50 2.71
644 670 9.914131 TGAATGTAATAAGATCTTATGAGACGG 57.086 33.333 25.16 0.00 36.04 4.79
645 671 8.764524 AATGTAATAAGATCTTATGAGACGGC 57.235 34.615 25.16 9.01 36.04 5.68
646 672 7.284919 TGTAATAAGATCTTATGAGACGGCA 57.715 36.000 25.16 11.19 36.04 5.69
647 673 7.371159 TGTAATAAGATCTTATGAGACGGCAG 58.629 38.462 25.16 0.00 36.04 4.85
648 674 6.412362 AATAAGATCTTATGAGACGGCAGT 57.588 37.500 25.16 6.04 36.04 4.40
649 675 7.526142 AATAAGATCTTATGAGACGGCAGTA 57.474 36.000 25.16 0.00 36.04 2.74
650 676 7.710676 ATAAGATCTTATGAGACGGCAGTAT 57.289 36.000 24.13 0.00 34.71 2.12
651 677 8.809468 ATAAGATCTTATGAGACGGCAGTATA 57.191 34.615 24.13 0.00 34.71 1.47
652 678 7.710676 AAGATCTTATGAGACGGCAGTATAT 57.289 36.000 6.06 0.00 33.99 0.86
653 679 7.710676 AGATCTTATGAGACGGCAGTATATT 57.289 36.000 0.00 0.00 33.99 1.28
654 680 7.542890 AGATCTTATGAGACGGCAGTATATTG 58.457 38.462 0.00 0.00 33.99 1.90
655 681 6.894339 TCTTATGAGACGGCAGTATATTGA 57.106 37.500 0.00 0.00 0.00 2.57
703 729 7.556275 TGGGACAAATGGAGTATCTTGAATTAC 59.444 37.037 0.00 0.00 31.92 1.89
706 732 9.167311 GACAAATGGAGTATCTTGAATTACTGT 57.833 33.333 0.00 0.00 33.73 3.55
711 737 7.265673 TGGAGTATCTTGAATTACTGTACTGC 58.734 38.462 0.00 0.00 33.73 4.40
728 754 9.003658 ACTGTACTGCATTATTAAGATTATGGC 57.996 33.333 0.00 0.00 0.00 4.40
730 756 6.500684 ACTGCATTATTAAGATTATGGCCG 57.499 37.500 0.00 0.00 0.00 6.13
746 778 1.673920 GGCCGGCGAAGAAATTATTCA 59.326 47.619 22.54 0.00 38.06 2.57
753 785 5.169561 CGGCGAAGAAATTATTCATCAAACG 59.830 40.000 0.00 0.00 38.06 3.60
850 887 8.457261 AGAGAAATGCAAGAAATGTATCTTCAC 58.543 33.333 0.00 0.00 37.56 3.18
854 891 6.110543 TGCAAGAAATGTATCTTCACGATG 57.889 37.500 0.00 0.00 37.56 3.84
857 894 6.183360 GCAAGAAATGTATCTTCACGATGTCA 60.183 38.462 0.00 0.00 37.56 3.58
858 895 6.893958 AGAAATGTATCTTCACGATGTCAC 57.106 37.500 0.00 0.00 33.48 3.67
859 896 5.812642 AGAAATGTATCTTCACGATGTCACC 59.187 40.000 0.00 0.00 33.48 4.02
879 916 2.604855 CCGTACTCACTGCCATCGTATC 60.605 54.545 0.00 0.00 0.00 2.24
884 921 2.623416 CTCACTGCCATCGTATCTACCA 59.377 50.000 0.00 0.00 0.00 3.25
926 963 5.767168 CCTGAAGATGCTATAAAAAGGAGGG 59.233 44.000 0.00 0.00 0.00 4.30
937 974 4.607293 AAAAAGGAGGGCAAATGAACTC 57.393 40.909 0.00 0.00 0.00 3.01
989 1026 2.478709 CCTGCAAACGTTGTAGCAACAA 60.479 45.455 19.44 0.00 43.32 2.83
1016 1053 3.838271 GATGGCCTCGGAGCGTCA 61.838 66.667 3.32 1.34 0.00 4.35
1058 1095 4.933064 CATCCTCCTCGTCGCGGC 62.933 72.222 6.13 1.93 0.00 6.53
1081 1118 2.679996 TACTGCTCAGCGCTCCCA 60.680 61.111 7.13 3.69 40.11 4.37
1114 1151 0.721154 TTGCTACAAGCGCATCTTCG 59.279 50.000 11.47 0.00 46.26 3.79
1155 1192 0.877213 ACACCGGCAACTTCGTGTAC 60.877 55.000 0.00 0.00 37.26 2.90
1295 1332 0.248907 GCACAGCACATGCATGGATC 60.249 55.000 29.41 17.31 45.16 3.36
1315 1363 5.242171 GGATCTAGCTACCTCTTTAGTGTCC 59.758 48.000 0.00 0.00 0.00 4.02
1433 1481 2.677003 ATTCGGTGCCAACTTCGCG 61.677 57.895 0.00 0.00 0.00 5.87
1470 1518 1.969200 GCTTCCCCCGGAGTACTTCC 61.969 65.000 0.73 0.00 43.04 3.46
1485 1533 0.326927 CTTCCAAAGACGGGGCCTTA 59.673 55.000 0.84 0.00 0.00 2.69
1506 1554 0.912487 TATTCCCGGGTCTGCCAACT 60.912 55.000 22.86 0.00 36.17 3.16
1538 1586 1.691196 TGGGCTGGTTCAAAGAAGTG 58.309 50.000 0.00 0.00 0.00 3.16
1539 1587 0.961753 GGGCTGGTTCAAAGAAGTGG 59.038 55.000 0.00 0.00 0.00 4.00
1541 1589 1.338020 GGCTGGTTCAAAGAAGTGGTG 59.662 52.381 0.00 0.00 0.00 4.17
1569 1617 2.124320 CACCAGGGCCCGGTAATG 60.124 66.667 30.05 17.75 34.02 1.90
1573 1621 0.106217 CCAGGGCCCGGTAATGAAAT 60.106 55.000 21.37 0.00 0.00 2.17
1582 1630 3.487879 CCCGGTAATGAAATTAACCACGC 60.488 47.826 0.00 0.00 43.58 5.34
1584 1632 3.181518 CGGTAATGAAATTAACCACGCGT 60.182 43.478 5.58 5.58 43.58 6.01
1585 1633 4.336932 GGTAATGAAATTAACCACGCGTC 58.663 43.478 9.86 0.00 40.63 5.19
1586 1634 3.481112 AATGAAATTAACCACGCGTCC 57.519 42.857 9.86 0.00 32.46 4.79
1587 1635 1.880271 TGAAATTAACCACGCGTCCA 58.120 45.000 9.86 0.00 0.00 4.02
1588 1636 2.428491 TGAAATTAACCACGCGTCCAT 58.572 42.857 9.86 0.00 0.00 3.41
1592 1640 0.675208 TTAACCACGCGTCCATGCAT 60.675 50.000 9.86 0.00 34.15 3.96
1593 1641 1.365368 TAACCACGCGTCCATGCATG 61.365 55.000 20.19 20.19 34.15 4.06
1594 1642 4.541482 CCACGCGTCCATGCATGC 62.541 66.667 21.69 11.82 34.15 4.06
1595 1643 3.801971 CACGCGTCCATGCATGCA 61.802 61.111 25.04 25.04 34.15 3.96
1596 1644 2.825387 ACGCGTCCATGCATGCAT 60.825 55.556 27.46 27.46 37.08 3.96
1625 1673 8.699283 AAAACCGTACTATCAGTTTTAGCTAG 57.301 34.615 0.00 0.00 39.84 3.42
1626 1674 5.829829 ACCGTACTATCAGTTTTAGCTAGC 58.170 41.667 6.62 6.62 0.00 3.42
1627 1675 5.593502 ACCGTACTATCAGTTTTAGCTAGCT 59.406 40.000 23.12 23.12 0.00 3.32
1628 1676 6.769822 ACCGTACTATCAGTTTTAGCTAGCTA 59.230 38.462 20.67 20.67 0.00 3.32
1629 1677 7.076983 CCGTACTATCAGTTTTAGCTAGCTAC 58.923 42.308 24.09 15.56 0.00 3.58
1630 1678 7.041235 CCGTACTATCAGTTTTAGCTAGCTACT 60.041 40.741 24.09 17.64 0.00 2.57
1631 1679 7.799447 CGTACTATCAGTTTTAGCTAGCTACTG 59.201 40.741 28.84 28.84 0.00 2.74
1632 1680 7.648039 ACTATCAGTTTTAGCTAGCTACTGT 57.352 36.000 31.19 23.94 0.00 3.55
1633 1681 8.749026 ACTATCAGTTTTAGCTAGCTACTGTA 57.251 34.615 31.19 23.83 0.00 2.74
1636 1684 6.853720 TCAGTTTTAGCTAGCTACTGTACTG 58.146 40.000 31.19 29.54 31.43 2.74
1666 1733 2.787601 TTGGGCTACGTACGATGATC 57.212 50.000 24.41 8.82 0.00 2.92
1794 1861 1.771255 GCCTACCAGTTCATCCCAGAT 59.229 52.381 0.00 0.00 0.00 2.90
1797 1864 3.200825 CCTACCAGTTCATCCCAGATGTT 59.799 47.826 4.60 0.00 0.00 2.71
1821 1888 1.597742 ACCGCATCATCAGTATTGCC 58.402 50.000 0.00 0.00 0.00 4.52
1849 1916 3.206150 CTTACACGCCATCAATTAGCCT 58.794 45.455 0.00 0.00 0.00 4.58
1869 1936 4.931002 GCCTGTACAAACAAATCATGCATT 59.069 37.500 0.00 0.00 34.49 3.56
1878 1945 9.316730 ACAAACAAATCATGCATTTATACATCC 57.683 29.630 0.00 0.00 32.48 3.51
1882 1949 8.644216 ACAAATCATGCATTTATACATCCATGT 58.356 29.630 0.00 0.00 37.58 3.21
1898 1965 5.366829 TCCATGTATCGTATTCGTAGGTG 57.633 43.478 0.00 0.00 38.33 4.00
1899 1966 4.823442 TCCATGTATCGTATTCGTAGGTGT 59.177 41.667 0.00 0.00 38.33 4.16
1900 1967 5.997129 TCCATGTATCGTATTCGTAGGTGTA 59.003 40.000 0.00 0.00 38.33 2.90
1901 1968 6.148315 TCCATGTATCGTATTCGTAGGTGTAG 59.852 42.308 0.00 0.00 38.33 2.74
1902 1969 5.929697 TGTATCGTATTCGTAGGTGTAGG 57.070 43.478 0.00 0.00 38.33 3.18
1903 1970 5.368145 TGTATCGTATTCGTAGGTGTAGGT 58.632 41.667 0.00 0.00 38.33 3.08
2012 2079 0.034337 TGCCCAAGTACCTGAACGAC 59.966 55.000 0.00 0.00 0.00 4.34
2024 2091 4.309950 AACGACCACCAGACGGGC 62.310 66.667 0.00 0.00 42.05 6.13
2060 2127 2.659016 CAGTTCGGCTGCCTCAGA 59.341 61.111 17.92 3.67 38.52 3.27
2101 2168 4.250431 GCACAACACGGCGCTGTT 62.250 61.111 21.75 14.61 34.56 3.16
2123 2190 0.827925 ACGAGGTCAACAGGCTCAGA 60.828 55.000 0.00 0.00 0.00 3.27
2188 2255 0.817013 GCCGCCATGGAAATCTTCAA 59.183 50.000 18.40 0.00 42.00 2.69
2232 2299 3.261951 CGACGCCCGATCGCATTT 61.262 61.111 10.32 0.00 41.76 2.32
2244 2311 4.752101 CCGATCGCATTTCTTCTCCTAATT 59.248 41.667 10.32 0.00 0.00 1.40
2245 2312 5.926542 CCGATCGCATTTCTTCTCCTAATTA 59.073 40.000 10.32 0.00 0.00 1.40
2259 2326 7.828508 TCTCCTAATTAAAGCGGACTACATA 57.171 36.000 0.00 0.00 0.00 2.29
2262 2329 6.872020 TCCTAATTAAAGCGGACTACATATGC 59.128 38.462 1.58 0.00 0.00 3.14
2263 2330 5.591643 AATTAAAGCGGACTACATATGCG 57.408 39.130 1.58 0.00 0.00 4.73
2310 2378 1.334288 CGATCGTTTTGCGTTTGGGC 61.334 55.000 7.03 0.00 42.13 5.36
2474 2542 1.809619 CAACGTCATCGCCGATGGT 60.810 57.895 25.40 14.32 40.15 3.55
2489 2557 2.916703 GGTGTGTTGCATGGGCCA 60.917 61.111 9.61 9.61 40.13 5.36
2549 2617 0.179189 GATTGCTCGCTTTGTTCCCG 60.179 55.000 0.00 0.00 0.00 5.14
2567 2635 1.019278 CGTACTTGCATCGGCCTGTT 61.019 55.000 0.00 0.00 40.13 3.16
2625 2693 6.127591 ACAGTATAGTAGTTTGTCTGGCTCAG 60.128 42.308 0.00 0.00 0.00 3.35
2629 2697 0.882042 AGTTTGTCTGGCTCAGTGCG 60.882 55.000 2.68 0.00 44.05 5.34
2635 2703 2.125552 TGGCTCAGTGCGGATTCG 60.126 61.111 0.00 0.00 44.05 3.34
2636 2704 2.125512 GGCTCAGTGCGGATTCGT 60.126 61.111 0.00 0.00 44.05 3.85
2641 2709 0.522626 TCAGTGCGGATTCGTCGTAA 59.477 50.000 0.00 0.00 38.89 3.18
2645 2713 2.357009 AGTGCGGATTCGTCGTAATACT 59.643 45.455 0.00 0.00 38.89 2.12
2646 2714 3.111098 GTGCGGATTCGTCGTAATACTT 58.889 45.455 0.00 0.00 38.89 2.24
2648 2716 3.181498 TGCGGATTCGTCGTAATACTTCA 60.181 43.478 0.00 0.00 38.89 3.02
2690 2758 6.387041 ACGTTTTATATCATGAGACGGAGA 57.613 37.500 0.09 0.00 33.74 3.71
2694 2762 5.888691 TTATATCATGAGACGGAGAGAGC 57.111 43.478 0.09 0.00 0.00 4.09
2696 2764 1.098869 TCATGAGACGGAGAGAGCAC 58.901 55.000 0.00 0.00 0.00 4.40
2697 2765 0.102120 CATGAGACGGAGAGAGCACC 59.898 60.000 0.00 0.00 0.00 5.01
2701 2769 2.025155 GAGACGGAGAGAGCACCATTA 58.975 52.381 0.00 0.00 0.00 1.90
2703 2771 2.428890 AGACGGAGAGAGCACCATTAAG 59.571 50.000 0.00 0.00 0.00 1.85
2704 2772 1.134670 ACGGAGAGAGCACCATTAAGC 60.135 52.381 0.00 0.00 0.00 3.09
2705 2773 1.137872 CGGAGAGAGCACCATTAAGCT 59.862 52.381 0.00 0.00 45.25 3.74
2706 2774 2.362397 CGGAGAGAGCACCATTAAGCTA 59.638 50.000 0.00 0.00 42.04 3.32
2708 2776 4.123506 GGAGAGAGCACCATTAAGCTAAC 58.876 47.826 0.00 0.00 42.04 2.34
2716 2817 6.653989 AGCACCATTAAGCTAACTCATACTT 58.346 36.000 0.00 0.00 39.78 2.24
2726 2827 6.653989 AGCTAACTCATACTTGCCTAAACAT 58.346 36.000 0.00 0.00 0.00 2.71
2728 2829 8.432805 AGCTAACTCATACTTGCCTAAACATAT 58.567 33.333 0.00 0.00 0.00 1.78
2729 2830 9.706691 GCTAACTCATACTTGCCTAAACATATA 57.293 33.333 0.00 0.00 0.00 0.86
2839 2940 9.710979 TTTCTATAAACTTTGTCAAACTTCACG 57.289 29.630 0.00 0.00 0.00 4.35
2840 2941 8.651391 TCTATAAACTTTGTCAAACTTCACGA 57.349 30.769 0.00 0.00 0.00 4.35
2841 2942 9.100554 TCTATAAACTTTGTCAAACTTCACGAA 57.899 29.630 0.00 0.00 0.00 3.85
2842 2943 9.370126 CTATAAACTTTGTCAAACTTCACGAAG 57.630 33.333 5.24 5.24 43.79 3.79
2856 2957 6.048073 CTTCACGAAGTTTGATTTCAGTCA 57.952 37.500 0.00 0.00 41.61 3.41
2857 2958 6.429791 TTCACGAAGTTTGATTTCAGTCAA 57.570 33.333 0.00 0.00 41.61 3.18
2858 2959 5.806286 TCACGAAGTTTGATTTCAGTCAAC 58.194 37.500 0.00 0.00 41.61 3.18
2859 2960 5.584649 TCACGAAGTTTGATTTCAGTCAACT 59.415 36.000 0.00 0.00 41.61 3.16
2860 2961 5.904080 CACGAAGTTTGATTTCAGTCAACTC 59.096 40.000 0.00 0.00 41.61 3.01
2861 2962 5.817816 ACGAAGTTTGATTTCAGTCAACTCT 59.182 36.000 0.00 0.00 37.78 3.24
2862 2963 6.984474 ACGAAGTTTGATTTCAGTCAACTCTA 59.016 34.615 0.00 0.00 37.78 2.43
2863 2964 7.494625 ACGAAGTTTGATTTCAGTCAACTCTAA 59.505 33.333 0.00 0.00 37.78 2.10
2864 2965 8.499162 CGAAGTTTGATTTCAGTCAACTCTAAT 58.501 33.333 0.00 0.00 37.80 1.73
2868 2969 9.495754 GTTTGATTTCAGTCAACTCTAATATGC 57.504 33.333 0.00 0.00 37.80 3.14
2869 2970 8.791327 TTGATTTCAGTCAACTCTAATATGCA 57.209 30.769 0.00 0.00 33.41 3.96
2870 2971 8.429493 TGATTTCAGTCAACTCTAATATGCAG 57.571 34.615 0.00 0.00 0.00 4.41
2871 2972 8.260114 TGATTTCAGTCAACTCTAATATGCAGA 58.740 33.333 0.00 0.00 0.00 4.26
2872 2973 8.659925 ATTTCAGTCAACTCTAATATGCAGAG 57.340 34.615 11.37 11.37 44.28 3.35
2918 3019 4.885325 ACGTAACTTCTGAAACACCCAAAT 59.115 37.500 0.00 0.00 0.00 2.32
2936 3037 8.272866 CACCCAAATATCAACGTTTTCTTTTTC 58.727 33.333 0.00 0.00 0.00 2.29
2944 3045 7.948278 TCAACGTTTTCTTTTTCAAAAGGAA 57.052 28.000 11.29 3.38 44.22 3.36
2968 3069 3.369892 CCCTCGGTCTCATCAAAGTGATT 60.370 47.826 0.00 0.00 34.28 2.57
2970 3071 4.498241 CTCGGTCTCATCAAAGTGATTCA 58.502 43.478 0.00 0.00 34.28 2.57
2987 3088 3.431673 TTCACACAGCCATACATCCAA 57.568 42.857 0.00 0.00 0.00 3.53
2999 3100 5.682990 GCCATACATCCAAACATTGAGCATT 60.683 40.000 0.00 0.00 0.00 3.56
3005 3106 4.574892 TCCAAACATTGAGCATTAGACGA 58.425 39.130 0.00 0.00 0.00 4.20
3022 3123 5.056894 AGACGAGTCTAGCGTTTACATTT 57.943 39.130 3.61 0.00 42.77 2.32
3026 3127 6.327934 ACGAGTCTAGCGTTTACATTTGTAT 58.672 36.000 0.00 0.00 39.18 2.29
3031 3132 9.982651 AGTCTAGCGTTTACATTTGTATATGAT 57.017 29.630 5.04 1.88 0.00 2.45
3078 3179 7.636150 AATGCTACTCTTTATTTGTCATGCT 57.364 32.000 0.00 0.00 0.00 3.79
3088 3189 7.550551 TCTTTATTTGTCATGCTAAGACTCTGG 59.449 37.037 0.00 0.00 36.94 3.86
3090 3191 1.208052 TGTCATGCTAAGACTCTGGCC 59.792 52.381 0.00 0.00 36.94 5.36
3119 3220 4.391216 CACAACTCATCTCAATGTCTCACC 59.609 45.833 0.00 0.00 34.32 4.02
3121 3222 3.176411 ACTCATCTCAATGTCTCACCCA 58.824 45.455 0.00 0.00 34.32 4.51
3128 3229 4.821805 TCTCAATGTCTCACCCAAAAGTTC 59.178 41.667 0.00 0.00 0.00 3.01
3129 3230 3.888930 TCAATGTCTCACCCAAAAGTTCC 59.111 43.478 0.00 0.00 0.00 3.62
3151 3252 5.247337 TCCGGCTATATAATCATTGGTGTCA 59.753 40.000 0.00 0.00 0.00 3.58
3154 3255 6.426633 CGGCTATATAATCATTGGTGTCAACA 59.573 38.462 0.00 0.00 35.48 3.33
3167 3268 4.826733 TGGTGTCAACAACTAATGCATCTT 59.173 37.500 0.00 0.00 33.92 2.40
3168 3269 5.301551 TGGTGTCAACAACTAATGCATCTTT 59.698 36.000 0.00 0.00 33.92 2.52
3194 3295 9.952188 TGATCTTACGATTTACTAGAGATTGTG 57.048 33.333 0.00 0.00 0.00 3.33
3198 3299 9.582431 CTTACGATTTACTAGAGATTGTGGAAA 57.418 33.333 0.00 0.00 0.00 3.13
3202 3303 8.383619 CGATTTACTAGAGATTGTGGAAAACTG 58.616 37.037 0.00 0.00 0.00 3.16
3203 3304 7.435068 TTTACTAGAGATTGTGGAAAACTGC 57.565 36.000 0.00 0.00 0.00 4.40
3213 3314 2.229784 GTGGAAAACTGCAGAGGGAATG 59.770 50.000 23.35 0.00 0.00 2.67
3216 3317 3.561313 GGAAAACTGCAGAGGGAATGGTA 60.561 47.826 23.35 0.00 0.00 3.25
3217 3318 3.356529 AAACTGCAGAGGGAATGGTAG 57.643 47.619 23.35 0.00 0.00 3.18
3222 3323 1.207791 CAGAGGGAATGGTAGTGCCT 58.792 55.000 0.00 0.00 39.95 4.75
3229 3330 2.027192 GGAATGGTAGTGCCTGAAGTGA 60.027 50.000 0.00 0.00 38.35 3.41
3233 3334 2.906389 TGGTAGTGCCTGAAGTGATCTT 59.094 45.455 0.00 0.00 38.35 2.40
3255 3356 1.062525 GGCGATGATGGTGAAACGC 59.937 57.895 0.00 0.00 44.18 4.84
3258 3359 1.358877 CGATGATGGTGAAACGCTGA 58.641 50.000 0.00 0.00 38.12 4.26
3259 3360 1.935873 CGATGATGGTGAAACGCTGAT 59.064 47.619 0.00 0.00 38.12 2.90
3267 3368 4.331968 TGGTGAAACGCTGATTTTATCCT 58.668 39.130 0.00 0.00 38.12 3.24
3268 3369 5.492895 TGGTGAAACGCTGATTTTATCCTA 58.507 37.500 0.00 0.00 38.12 2.94
3303 3405 5.417580 GCCCTATTTTTAGGTTGACATGTGA 59.582 40.000 1.15 0.00 35.45 3.58
3304 3406 6.071616 GCCCTATTTTTAGGTTGACATGTGAA 60.072 38.462 1.15 0.00 35.45 3.18
3305 3407 7.312899 CCCTATTTTTAGGTTGACATGTGAAC 58.687 38.462 18.60 18.60 35.45 3.18
3306 3408 7.021196 CCTATTTTTAGGTTGACATGTGAACG 58.979 38.462 19.80 4.86 32.60 3.95
3307 3409 5.821516 TTTTTAGGTTGACATGTGAACGT 57.178 34.783 23.27 23.27 0.00 3.99
3308 3410 6.922247 TTTTTAGGTTGACATGTGAACGTA 57.078 33.333 21.48 21.48 0.00 3.57
3309 3411 6.533819 TTTTAGGTTGACATGTGAACGTAG 57.466 37.500 23.19 0.00 31.14 3.51
3310 3412 2.413837 AGGTTGACATGTGAACGTAGC 58.586 47.619 19.55 7.65 0.00 3.58
3311 3413 2.139917 GGTTGACATGTGAACGTAGCA 58.860 47.619 19.80 0.00 0.00 3.49
3312 3414 2.096417 GGTTGACATGTGAACGTAGCAC 60.096 50.000 19.80 12.94 36.81 4.40
3313 3415 1.790755 TGACATGTGAACGTAGCACC 58.209 50.000 1.15 4.47 35.43 5.01
3314 3416 1.343142 TGACATGTGAACGTAGCACCT 59.657 47.619 1.15 6.30 35.43 4.00
3315 3417 2.559231 TGACATGTGAACGTAGCACCTA 59.441 45.455 1.15 2.48 35.43 3.08
3316 3418 3.194755 TGACATGTGAACGTAGCACCTAT 59.805 43.478 1.15 4.40 35.43 2.57
3317 3419 4.399934 TGACATGTGAACGTAGCACCTATA 59.600 41.667 1.15 1.58 35.43 1.31
3318 3420 5.105675 TGACATGTGAACGTAGCACCTATAA 60.106 40.000 1.15 1.27 35.43 0.98
3319 3421 5.726397 ACATGTGAACGTAGCACCTATAAA 58.274 37.500 16.06 0.67 35.43 1.40
3320 3422 6.167685 ACATGTGAACGTAGCACCTATAAAA 58.832 36.000 16.06 0.08 35.43 1.52
3321 3423 6.312918 ACATGTGAACGTAGCACCTATAAAAG 59.687 38.462 16.06 0.49 35.43 2.27
3322 3424 4.628333 TGTGAACGTAGCACCTATAAAAGC 59.372 41.667 16.06 0.00 35.43 3.51
3323 3425 4.033702 GTGAACGTAGCACCTATAAAAGCC 59.966 45.833 9.62 0.00 0.00 4.35
3324 3426 3.899052 ACGTAGCACCTATAAAAGCCA 57.101 42.857 0.00 0.00 0.00 4.75
3325 3427 4.210724 ACGTAGCACCTATAAAAGCCAA 57.789 40.909 0.00 0.00 0.00 4.52
3326 3428 4.189231 ACGTAGCACCTATAAAAGCCAAG 58.811 43.478 0.00 0.00 0.00 3.61
3327 3429 4.189231 CGTAGCACCTATAAAAGCCAAGT 58.811 43.478 0.00 0.00 0.00 3.16
3328 3430 4.270325 CGTAGCACCTATAAAAGCCAAGTC 59.730 45.833 0.00 0.00 0.00 3.01
3329 3431 3.621558 AGCACCTATAAAAGCCAAGTCC 58.378 45.455 0.00 0.00 0.00 3.85
3330 3432 3.267031 AGCACCTATAAAAGCCAAGTCCT 59.733 43.478 0.00 0.00 0.00 3.85
3331 3433 4.473559 AGCACCTATAAAAGCCAAGTCCTA 59.526 41.667 0.00 0.00 0.00 2.94
3332 3434 4.816925 GCACCTATAAAAGCCAAGTCCTAG 59.183 45.833 0.00 0.00 0.00 3.02
3333 3435 5.396436 GCACCTATAAAAGCCAAGTCCTAGA 60.396 44.000 0.00 0.00 0.00 2.43
3334 3436 6.049790 CACCTATAAAAGCCAAGTCCTAGAC 58.950 44.000 0.00 0.00 0.00 2.59
3335 3437 5.965091 ACCTATAAAAGCCAAGTCCTAGACT 59.035 40.000 0.00 0.00 45.64 3.24
3344 3446 1.186200 AGTCCTAGACTTCGCATGCA 58.814 50.000 19.57 1.73 40.28 3.96
3345 3447 1.134965 AGTCCTAGACTTCGCATGCAC 60.135 52.381 19.57 3.85 40.28 4.57
3346 3448 0.894835 TCCTAGACTTCGCATGCACA 59.105 50.000 19.57 0.00 0.00 4.57
3347 3449 1.482182 TCCTAGACTTCGCATGCACAT 59.518 47.619 19.57 0.00 0.00 3.21
3348 3450 1.863454 CCTAGACTTCGCATGCACATC 59.137 52.381 19.57 9.19 0.00 3.06
3349 3451 1.863454 CTAGACTTCGCATGCACATCC 59.137 52.381 19.57 3.36 0.00 3.51
3350 3452 0.251354 AGACTTCGCATGCACATCCT 59.749 50.000 19.57 5.80 0.00 3.24
3351 3453 1.089920 GACTTCGCATGCACATCCTT 58.910 50.000 19.57 0.00 0.00 3.36
3352 3454 0.806868 ACTTCGCATGCACATCCTTG 59.193 50.000 19.57 0.00 0.00 3.61
3353 3455 0.806868 CTTCGCATGCACATCCTTGT 59.193 50.000 19.57 0.00 36.15 3.16
3354 3456 0.804364 TTCGCATGCACATCCTTGTC 59.196 50.000 19.57 0.00 32.34 3.18
3355 3457 1.026182 TCGCATGCACATCCTTGTCC 61.026 55.000 19.57 0.00 32.34 4.02
3356 3458 1.028330 CGCATGCACATCCTTGTCCT 61.028 55.000 19.57 0.00 32.34 3.85
3357 3459 1.180029 GCATGCACATCCTTGTCCTT 58.820 50.000 14.21 0.00 32.34 3.36
3358 3460 1.547372 GCATGCACATCCTTGTCCTTT 59.453 47.619 14.21 0.00 32.34 3.11
3359 3461 2.416431 GCATGCACATCCTTGTCCTTTC 60.416 50.000 14.21 0.00 32.34 2.62
3360 3462 1.522668 TGCACATCCTTGTCCTTTCG 58.477 50.000 0.00 0.00 32.34 3.46
3361 3463 1.071542 TGCACATCCTTGTCCTTTCGA 59.928 47.619 0.00 0.00 32.34 3.71
3362 3464 1.734465 GCACATCCTTGTCCTTTCGAG 59.266 52.381 0.00 0.00 32.34 4.04
3363 3465 2.872038 GCACATCCTTGTCCTTTCGAGT 60.872 50.000 0.00 0.00 32.34 4.18
3364 3466 2.738846 CACATCCTTGTCCTTTCGAGTG 59.261 50.000 0.00 0.00 32.34 3.51
3365 3467 1.734465 CATCCTTGTCCTTTCGAGTGC 59.266 52.381 0.00 0.00 0.00 4.40
3366 3468 0.034896 TCCTTGTCCTTTCGAGTGCC 59.965 55.000 0.00 0.00 0.00 5.01
3367 3469 0.035458 CCTTGTCCTTTCGAGTGCCT 59.965 55.000 0.00 0.00 0.00 4.75
3368 3470 1.275291 CCTTGTCCTTTCGAGTGCCTA 59.725 52.381 0.00 0.00 0.00 3.93
3369 3471 2.338500 CTTGTCCTTTCGAGTGCCTAC 58.662 52.381 0.00 0.00 0.00 3.18
3370 3472 1.629043 TGTCCTTTCGAGTGCCTACT 58.371 50.000 0.00 0.00 40.66 2.57
3380 3482 2.393271 AGTGCCTACTCAAGCATGAC 57.607 50.000 0.00 0.00 41.86 3.06
3381 3483 1.905215 AGTGCCTACTCAAGCATGACT 59.095 47.619 0.00 0.00 41.86 3.41
3382 3484 2.005451 GTGCCTACTCAAGCATGACTG 58.995 52.381 0.00 0.00 41.86 3.51
3383 3485 1.065926 TGCCTACTCAAGCATGACTGG 60.066 52.381 0.00 0.00 33.08 4.00
3384 3486 1.745141 GCCTACTCAAGCATGACTGGG 60.745 57.143 0.00 0.00 0.00 4.45
3385 3487 1.556911 CCTACTCAAGCATGACTGGGT 59.443 52.381 0.00 0.45 0.00 4.51
3386 3488 2.625737 CTACTCAAGCATGACTGGGTG 58.374 52.381 9.60 0.00 0.00 4.61
3387 3489 0.607489 ACTCAAGCATGACTGGGTGC 60.607 55.000 0.00 0.00 41.57 5.01
3388 3490 1.642037 CTCAAGCATGACTGGGTGCG 61.642 60.000 0.00 0.00 45.69 5.34
3389 3491 2.360350 AAGCATGACTGGGTGCGG 60.360 61.111 0.00 0.00 45.69 5.69
3390 3492 2.894257 AAGCATGACTGGGTGCGGA 61.894 57.895 0.00 0.00 45.69 5.54
3391 3493 2.124570 GCATGACTGGGTGCGGAT 60.125 61.111 0.00 0.00 0.00 4.18
3392 3494 2.182842 GCATGACTGGGTGCGGATC 61.183 63.158 0.00 0.00 0.00 3.36
3393 3495 1.524621 CATGACTGGGTGCGGATCC 60.525 63.158 0.00 0.00 0.00 3.36
3394 3496 1.690633 ATGACTGGGTGCGGATCCT 60.691 57.895 8.05 0.00 0.00 3.24
3395 3497 0.398522 ATGACTGGGTGCGGATCCTA 60.399 55.000 8.05 0.00 0.00 2.94
3396 3498 0.616395 TGACTGGGTGCGGATCCTAA 60.616 55.000 8.05 0.00 0.00 2.69
3397 3499 0.105039 GACTGGGTGCGGATCCTAAG 59.895 60.000 8.05 0.00 0.00 2.18
3398 3500 1.338136 ACTGGGTGCGGATCCTAAGG 61.338 60.000 8.05 0.00 0.00 2.69
3399 3501 2.111251 GGGTGCGGATCCTAAGGC 59.889 66.667 10.75 6.28 0.00 4.35
3400 3502 2.111251 GGTGCGGATCCTAAGGCC 59.889 66.667 10.75 0.00 0.00 5.19
3401 3503 2.111251 GTGCGGATCCTAAGGCCC 59.889 66.667 10.75 0.00 0.00 5.80
3402 3504 2.366301 TGCGGATCCTAAGGCCCA 60.366 61.111 10.75 0.00 0.00 5.36
3403 3505 1.770110 TGCGGATCCTAAGGCCCAT 60.770 57.895 10.75 0.00 0.00 4.00
3404 3506 0.472925 TGCGGATCCTAAGGCCCATA 60.473 55.000 10.75 0.00 0.00 2.74
3405 3507 0.250513 GCGGATCCTAAGGCCCATAG 59.749 60.000 10.75 2.12 0.00 2.23
3406 3508 1.938585 CGGATCCTAAGGCCCATAGA 58.061 55.000 10.75 0.43 0.00 1.98
3407 3509 1.550976 CGGATCCTAAGGCCCATAGAC 59.449 57.143 10.75 5.87 0.00 2.59
3408 3510 2.621070 GGATCCTAAGGCCCATAGACA 58.379 52.381 13.48 2.06 0.00 3.41
3409 3511 3.185455 GGATCCTAAGGCCCATAGACAT 58.815 50.000 13.48 6.16 0.00 3.06
3410 3512 3.589288 GGATCCTAAGGCCCATAGACATT 59.411 47.826 13.48 0.00 0.00 2.71
3411 3513 4.043435 GGATCCTAAGGCCCATAGACATTT 59.957 45.833 13.48 0.00 0.00 2.32
3412 3514 4.437682 TCCTAAGGCCCATAGACATTTG 57.562 45.455 13.48 0.00 0.00 2.32
3413 3515 3.785887 TCCTAAGGCCCATAGACATTTGT 59.214 43.478 13.48 0.00 0.00 2.83
3414 3516 4.972568 TCCTAAGGCCCATAGACATTTGTA 59.027 41.667 13.48 0.00 0.00 2.41
3415 3517 5.071788 TCCTAAGGCCCATAGACATTTGTAG 59.928 44.000 13.48 0.00 0.00 2.74
3416 3518 3.864789 AGGCCCATAGACATTTGTAGG 57.135 47.619 0.00 0.00 0.00 3.18
3417 3519 3.123273 AGGCCCATAGACATTTGTAGGT 58.877 45.455 0.00 0.00 0.00 3.08
3418 3520 3.117888 AGGCCCATAGACATTTGTAGGTG 60.118 47.826 0.00 0.00 0.00 4.00
3419 3521 3.214328 GCCCATAGACATTTGTAGGTGG 58.786 50.000 0.00 0.00 0.00 4.61
3420 3522 3.118038 GCCCATAGACATTTGTAGGTGGA 60.118 47.826 8.48 0.00 0.00 4.02
3421 3523 4.451900 CCCATAGACATTTGTAGGTGGAC 58.548 47.826 8.48 0.00 0.00 4.02
3422 3524 4.164221 CCCATAGACATTTGTAGGTGGACT 59.836 45.833 8.48 0.00 0.00 3.85
3423 3525 5.339200 CCCATAGACATTTGTAGGTGGACTT 60.339 44.000 8.48 0.00 0.00 3.01
3424 3526 5.586243 CCATAGACATTTGTAGGTGGACTTG 59.414 44.000 3.05 0.00 0.00 3.16
3425 3527 4.974645 AGACATTTGTAGGTGGACTTGA 57.025 40.909 0.00 0.00 0.00 3.02
3426 3528 5.505181 AGACATTTGTAGGTGGACTTGAT 57.495 39.130 0.00 0.00 0.00 2.57
3427 3529 5.491982 AGACATTTGTAGGTGGACTTGATC 58.508 41.667 0.00 0.00 0.00 2.92
3439 3541 2.703416 GACTTGATCCATGCACACTGA 58.297 47.619 0.00 0.00 0.00 3.41
3440 3542 3.276857 GACTTGATCCATGCACACTGAT 58.723 45.455 0.00 0.00 0.00 2.90
3441 3543 4.445453 GACTTGATCCATGCACACTGATA 58.555 43.478 0.00 0.00 0.00 2.15
3442 3544 4.847198 ACTTGATCCATGCACACTGATAA 58.153 39.130 0.00 0.00 0.00 1.75
3443 3545 4.637534 ACTTGATCCATGCACACTGATAAC 59.362 41.667 0.00 0.00 0.00 1.89
3444 3546 4.492494 TGATCCATGCACACTGATAACT 57.508 40.909 0.00 0.00 0.00 2.24
3445 3547 4.445453 TGATCCATGCACACTGATAACTC 58.555 43.478 0.00 0.00 0.00 3.01
3446 3548 3.979101 TCCATGCACACTGATAACTCA 57.021 42.857 0.00 0.00 0.00 3.41
3447 3549 3.599343 TCCATGCACACTGATAACTCAC 58.401 45.455 0.00 0.00 0.00 3.51
3448 3550 3.007831 TCCATGCACACTGATAACTCACA 59.992 43.478 0.00 0.00 0.00 3.58
3449 3551 3.752747 CCATGCACACTGATAACTCACAA 59.247 43.478 0.00 0.00 0.00 3.33
3450 3552 4.142752 CCATGCACACTGATAACTCACAAG 60.143 45.833 0.00 0.00 0.00 3.16
3451 3553 4.071961 TGCACACTGATAACTCACAAGT 57.928 40.909 0.00 0.00 37.32 3.16
3452 3554 5.208463 TGCACACTGATAACTCACAAGTA 57.792 39.130 0.00 0.00 33.48 2.24
3453 3555 5.793817 TGCACACTGATAACTCACAAGTAT 58.206 37.500 0.00 0.00 33.48 2.12
3454 3556 6.930731 TGCACACTGATAACTCACAAGTATA 58.069 36.000 0.00 0.00 33.48 1.47
3455 3557 7.382898 TGCACACTGATAACTCACAAGTATAA 58.617 34.615 0.00 0.00 33.48 0.98
3456 3558 7.545615 TGCACACTGATAACTCACAAGTATAAG 59.454 37.037 0.00 0.00 33.48 1.73
3457 3559 7.010552 GCACACTGATAACTCACAAGTATAAGG 59.989 40.741 0.00 0.00 33.48 2.69
3458 3560 7.492669 CACACTGATAACTCACAAGTATAAGGG 59.507 40.741 0.00 0.00 33.48 3.95
3459 3561 7.399191 ACACTGATAACTCACAAGTATAAGGGA 59.601 37.037 0.00 0.00 33.48 4.20
3460 3562 8.424918 CACTGATAACTCACAAGTATAAGGGAT 58.575 37.037 0.00 0.00 33.48 3.85
3461 3563 8.643324 ACTGATAACTCACAAGTATAAGGGATC 58.357 37.037 0.00 0.00 33.48 3.36
3462 3564 7.658261 TGATAACTCACAAGTATAAGGGATCG 58.342 38.462 0.00 0.00 33.48 3.69
3463 3565 5.934402 AACTCACAAGTATAAGGGATCGT 57.066 39.130 0.00 0.00 33.48 3.73
3464 3566 8.701908 ATAACTCACAAGTATAAGGGATCGTA 57.298 34.615 0.00 0.00 33.48 3.43
3465 3567 7.414222 AACTCACAAGTATAAGGGATCGTAA 57.586 36.000 0.00 0.00 33.48 3.18
3466 3568 7.598759 ACTCACAAGTATAAGGGATCGTAAT 57.401 36.000 0.00 0.00 32.59 1.89
3467 3569 8.701908 ACTCACAAGTATAAGGGATCGTAATA 57.298 34.615 0.00 0.00 32.59 0.98
3468 3570 8.794553 ACTCACAAGTATAAGGGATCGTAATAG 58.205 37.037 0.00 0.00 32.59 1.73
3469 3571 8.701908 TCACAAGTATAAGGGATCGTAATAGT 57.298 34.615 0.00 0.00 0.00 2.12
3470 3572 9.797642 TCACAAGTATAAGGGATCGTAATAGTA 57.202 33.333 0.00 0.00 0.00 1.82
3475 3577 9.896645 AGTATAAGGGATCGTAATAGTATTCGA 57.103 33.333 15.13 15.13 36.77 3.71
3477 3579 6.512342 AAGGGATCGTAATAGTATTCGAGG 57.488 41.667 16.77 2.76 35.85 4.63
3478 3580 4.948621 AGGGATCGTAATAGTATTCGAGGG 59.051 45.833 16.77 0.54 35.85 4.30
3479 3581 4.704057 GGGATCGTAATAGTATTCGAGGGT 59.296 45.833 16.77 6.41 35.85 4.34
3480 3582 5.882557 GGGATCGTAATAGTATTCGAGGGTA 59.117 44.000 16.77 2.01 35.85 3.69
3481 3583 6.038050 GGGATCGTAATAGTATTCGAGGGTAG 59.962 46.154 16.77 0.00 35.85 3.18
3482 3584 6.820656 GGATCGTAATAGTATTCGAGGGTAGA 59.179 42.308 16.77 3.13 35.85 2.59
3483 3585 7.335422 GGATCGTAATAGTATTCGAGGGTAGAA 59.665 40.741 16.77 0.00 35.85 2.10
3484 3586 8.804912 ATCGTAATAGTATTCGAGGGTAGAAT 57.195 34.615 16.77 0.00 40.88 2.40
3485 3587 9.896645 ATCGTAATAGTATTCGAGGGTAGAATA 57.103 33.333 16.77 0.00 38.96 1.75
3486 3588 9.896645 TCGTAATAGTATTCGAGGGTAGAATAT 57.103 33.333 0.00 0.00 41.06 1.28
3492 3594 7.668492 AGTATTCGAGGGTAGAATATTCAACC 58.332 38.462 17.56 14.28 41.06 3.77
3493 3595 4.950205 TCGAGGGTAGAATATTCAACCC 57.050 45.455 17.56 12.55 37.67 4.11
3494 3596 4.291792 TCGAGGGTAGAATATTCAACCCA 58.708 43.478 17.56 1.32 39.75 4.51
3495 3597 4.717778 TCGAGGGTAGAATATTCAACCCAA 59.282 41.667 17.56 2.48 39.75 4.12
3496 3598 5.190132 TCGAGGGTAGAATATTCAACCCAAA 59.810 40.000 17.56 2.18 39.75 3.28
3497 3599 6.062095 CGAGGGTAGAATATTCAACCCAAAT 58.938 40.000 17.56 4.42 39.75 2.32
3498 3600 6.546034 CGAGGGTAGAATATTCAACCCAAATT 59.454 38.462 17.56 0.44 39.75 1.82
3499 3601 7.068226 CGAGGGTAGAATATTCAACCCAAATTT 59.932 37.037 17.56 0.00 39.75 1.82
3500 3602 9.416284 GAGGGTAGAATATTCAACCCAAATTTA 57.584 33.333 17.56 0.00 39.75 1.40
3501 3603 9.951866 AGGGTAGAATATTCAACCCAAATTTAT 57.048 29.630 17.56 0.00 39.75 1.40
3511 3613 8.568676 TTCAACCCAAATTTATAGATTCGACA 57.431 30.769 0.00 0.00 0.00 4.35
3512 3614 7.981142 TCAACCCAAATTTATAGATTCGACAC 58.019 34.615 0.00 0.00 0.00 3.67
3513 3615 7.608376 TCAACCCAAATTTATAGATTCGACACA 59.392 33.333 0.00 0.00 0.00 3.72
3514 3616 7.931578 ACCCAAATTTATAGATTCGACACAA 57.068 32.000 0.00 0.00 0.00 3.33
3515 3617 7.985476 ACCCAAATTTATAGATTCGACACAAG 58.015 34.615 0.00 0.00 0.00 3.16
3516 3618 7.067008 ACCCAAATTTATAGATTCGACACAAGG 59.933 37.037 0.00 0.00 0.00 3.61
3517 3619 7.417612 CCAAATTTATAGATTCGACACAAGGG 58.582 38.462 0.00 0.00 0.00 3.95
3518 3620 7.417612 CAAATTTATAGATTCGACACAAGGGG 58.582 38.462 0.00 0.00 0.00 4.79
3519 3621 5.943349 TTTATAGATTCGACACAAGGGGA 57.057 39.130 0.00 0.00 0.00 4.81
3520 3622 5.531122 TTATAGATTCGACACAAGGGGAG 57.469 43.478 0.00 0.00 0.00 4.30
3521 3623 0.250513 AGATTCGACACAAGGGGAGC 59.749 55.000 0.00 0.00 0.00 4.70
3522 3624 0.744771 GATTCGACACAAGGGGAGCC 60.745 60.000 0.00 0.00 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
108 109 9.991906 ATTTTCACAATTGATTCTCAATGAACT 57.008 25.926 13.59 0.00 45.57 3.01
185 190 6.889177 TGAGGGCAATTATCAAGACAATTGTA 59.111 34.615 11.95 0.00 41.87 2.41
254 259 5.016831 GTGGTAGGTTTCAGGAATGGATTT 58.983 41.667 0.00 0.00 0.00 2.17
307 312 4.885907 ACAGATGTGCATCCAATAGAAAGG 59.114 41.667 8.41 0.00 38.58 3.11
316 321 0.038599 AGCCAACAGATGTGCATCCA 59.961 50.000 8.41 0.00 38.58 3.41
353 358 8.807948 AAGCTACAATGTATATCCAACACTTT 57.192 30.769 0.00 0.00 0.00 2.66
400 406 5.408604 ACTGGTTATCTCTGTACAAAAAGCG 59.591 40.000 0.00 0.00 0.00 4.68
402 408 6.149474 CCCACTGGTTATCTCTGTACAAAAAG 59.851 42.308 0.00 0.00 0.00 2.27
413 422 0.912486 ACTGGCCCACTGGTTATCTC 59.088 55.000 0.00 0.00 0.00 2.75
415 424 1.751437 GAACTGGCCCACTGGTTATC 58.249 55.000 0.00 0.00 0.00 1.75
521 547 6.029607 GTGGGCACATATATTAATTGCATCG 58.970 40.000 10.40 0.00 34.76 3.84
523 549 5.476599 ACGTGGGCACATATATTAATTGCAT 59.523 36.000 10.40 0.00 34.76 3.96
525 551 5.153513 CACGTGGGCACATATATTAATTGC 58.846 41.667 7.95 0.00 0.00 3.56
534 560 2.418368 AATCACACGTGGGCACATAT 57.582 45.000 21.57 1.19 0.00 1.78
544 570 9.424319 GGAAGTATATGATATCAAATCACACGT 57.576 33.333 9.99 1.17 0.00 4.49
563 589 7.739444 TCTTATGTTATGGGATGGAGGAAGTAT 59.261 37.037 0.00 0.00 0.00 2.12
564 590 7.079700 TCTTATGTTATGGGATGGAGGAAGTA 58.920 38.462 0.00 0.00 0.00 2.24
565 591 5.911178 TCTTATGTTATGGGATGGAGGAAGT 59.089 40.000 0.00 0.00 0.00 3.01
566 592 6.439636 TCTTATGTTATGGGATGGAGGAAG 57.560 41.667 0.00 0.00 0.00 3.46
567 593 6.794493 AGATCTTATGTTATGGGATGGAGGAA 59.206 38.462 0.00 0.00 0.00 3.36
568 594 6.334296 AGATCTTATGTTATGGGATGGAGGA 58.666 40.000 0.00 0.00 0.00 3.71
569 595 6.633325 AGATCTTATGTTATGGGATGGAGG 57.367 41.667 0.00 0.00 0.00 4.30
618 644 9.914131 CCGTCTCATAAGATCTTATTACATTCA 57.086 33.333 22.76 0.00 33.79 2.57
619 645 8.865001 GCCGTCTCATAAGATCTTATTACATTC 58.135 37.037 22.76 11.64 33.79 2.67
620 646 8.367911 TGCCGTCTCATAAGATCTTATTACATT 58.632 33.333 22.76 1.96 33.79 2.71
621 647 7.896811 TGCCGTCTCATAAGATCTTATTACAT 58.103 34.615 22.76 3.68 33.79 2.29
622 648 7.014326 ACTGCCGTCTCATAAGATCTTATTACA 59.986 37.037 22.76 10.68 33.79 2.41
623 649 7.371936 ACTGCCGTCTCATAAGATCTTATTAC 58.628 38.462 22.76 18.71 33.79 1.89
624 650 7.526142 ACTGCCGTCTCATAAGATCTTATTA 57.474 36.000 22.76 15.44 33.79 0.98
625 651 6.412362 ACTGCCGTCTCATAAGATCTTATT 57.588 37.500 22.76 8.11 33.79 1.40
626 652 7.710676 ATACTGCCGTCTCATAAGATCTTAT 57.289 36.000 20.20 20.20 36.27 1.73
627 653 8.809468 ATATACTGCCGTCTCATAAGATCTTA 57.191 34.615 17.32 17.32 33.08 2.10
628 654 7.710676 ATATACTGCCGTCTCATAAGATCTT 57.289 36.000 13.56 13.56 33.08 2.40
629 655 7.394641 TCAATATACTGCCGTCTCATAAGATCT 59.605 37.037 0.00 0.00 33.08 2.75
630 656 7.539436 TCAATATACTGCCGTCTCATAAGATC 58.461 38.462 0.00 0.00 33.08 2.75
631 657 7.468141 TCAATATACTGCCGTCTCATAAGAT 57.532 36.000 0.00 0.00 33.08 2.40
632 658 6.894339 TCAATATACTGCCGTCTCATAAGA 57.106 37.500 0.00 0.00 0.00 2.10
633 659 7.600375 ACATTCAATATACTGCCGTCTCATAAG 59.400 37.037 0.00 0.00 0.00 1.73
634 660 7.441836 ACATTCAATATACTGCCGTCTCATAA 58.558 34.615 0.00 0.00 0.00 1.90
635 661 6.993079 ACATTCAATATACTGCCGTCTCATA 58.007 36.000 0.00 0.00 0.00 2.15
636 662 5.858381 ACATTCAATATACTGCCGTCTCAT 58.142 37.500 0.00 0.00 0.00 2.90
637 663 5.276461 ACATTCAATATACTGCCGTCTCA 57.724 39.130 0.00 0.00 0.00 3.27
638 664 7.891183 ATTACATTCAATATACTGCCGTCTC 57.109 36.000 0.00 0.00 0.00 3.36
639 665 9.424319 CTTATTACATTCAATATACTGCCGTCT 57.576 33.333 0.00 0.00 0.00 4.18
640 666 9.419297 TCTTATTACATTCAATATACTGCCGTC 57.581 33.333 0.00 0.00 0.00 4.79
641 667 9.944376 ATCTTATTACATTCAATATACTGCCGT 57.056 29.630 0.00 0.00 0.00 5.68
684 710 9.823647 CAGTACAGTAATTCAAGATACTCCATT 57.176 33.333 0.00 0.00 30.09 3.16
686 712 7.093509 TGCAGTACAGTAATTCAAGATACTCCA 60.094 37.037 0.00 0.00 30.09 3.86
687 713 7.265673 TGCAGTACAGTAATTCAAGATACTCC 58.734 38.462 0.00 0.00 30.09 3.85
703 729 8.454106 GGCCATAATCTTAATAATGCAGTACAG 58.546 37.037 0.00 0.00 0.00 2.74
706 732 6.597672 CCGGCCATAATCTTAATAATGCAGTA 59.402 38.462 2.24 0.00 0.00 2.74
711 737 4.634004 TCGCCGGCCATAATCTTAATAATG 59.366 41.667 23.46 0.00 0.00 1.90
725 751 1.673920 GAATAATTTCTTCGCCGGCCA 59.326 47.619 23.46 4.67 0.00 5.36
728 754 4.811555 TGATGAATAATTTCTTCGCCGG 57.188 40.909 0.00 0.00 38.32 6.13
730 756 6.027749 ACGTTTGATGAATAATTTCTTCGCC 58.972 36.000 0.00 0.00 38.32 5.54
820 854 9.852091 AGATACATTTCTTGCATTTCTCTTTTC 57.148 29.630 0.00 0.00 0.00 2.29
831 868 5.643348 ACATCGTGAAGATACATTTCTTGCA 59.357 36.000 0.00 0.00 37.52 4.08
850 887 1.896345 CAGTGAGTACGGTGACATCG 58.104 55.000 6.55 6.55 0.00 3.84
854 891 0.246635 ATGGCAGTGAGTACGGTGAC 59.753 55.000 0.00 0.00 0.00 3.67
857 894 1.248785 ACGATGGCAGTGAGTACGGT 61.249 55.000 0.00 0.00 0.00 4.83
858 895 0.736636 TACGATGGCAGTGAGTACGG 59.263 55.000 0.00 0.00 0.00 4.02
859 896 2.290916 AGATACGATGGCAGTGAGTACG 59.709 50.000 0.00 0.00 0.00 3.67
879 916 4.793353 GCCGAATTCTACTAGCAGTGGTAG 60.793 50.000 24.38 24.38 38.74 3.18
884 921 2.101582 CAGGCCGAATTCTACTAGCAGT 59.898 50.000 3.52 0.00 0.00 4.40
989 1026 1.893786 GAGGCCATCGAGACACTGT 59.106 57.895 5.01 0.00 0.00 3.55
1016 1053 1.423921 AGGAAATGGAACGGTGTCCTT 59.576 47.619 9.64 2.86 38.62 3.36
1058 1095 2.103143 CGCTGAGCAGTAGGACGG 59.897 66.667 4.88 0.00 0.00 4.79
1288 1325 6.266558 ACACTAAAGAGGTAGCTAGATCCATG 59.733 42.308 0.00 0.00 0.00 3.66
1289 1326 6.377912 ACACTAAAGAGGTAGCTAGATCCAT 58.622 40.000 0.00 0.00 0.00 3.41
1290 1327 5.767670 ACACTAAAGAGGTAGCTAGATCCA 58.232 41.667 0.00 0.00 0.00 3.41
1291 1328 5.242171 GGACACTAAAGAGGTAGCTAGATCC 59.758 48.000 0.00 0.00 0.00 3.36
1295 1332 3.315749 CCGGACACTAAAGAGGTAGCTAG 59.684 52.174 0.00 0.00 0.00 3.42
1315 1363 1.889105 ACAGTTGTCAGCACAGCCG 60.889 57.895 0.00 0.00 34.33 5.52
1402 1450 0.965363 ACCGAATGTGCATTGTCCCC 60.965 55.000 1.77 0.00 0.00 4.81
1433 1481 4.645921 GCCGTGGCAGCAAACACC 62.646 66.667 5.89 0.00 41.49 4.16
1470 1518 3.203716 GAATACTAAGGCCCCGTCTTTG 58.796 50.000 0.00 0.00 0.00 2.77
1485 1533 0.912487 TTGGCAGACCCGGGAATACT 60.912 55.000 32.02 17.36 35.87 2.12
1506 1554 2.760799 GCCCATCTGCATGCCCAA 60.761 61.111 16.68 0.03 0.00 4.12
1541 1589 1.819632 CCCTGGTGCTATCCGTTGC 60.820 63.158 0.00 0.00 0.00 4.17
1569 1617 2.780993 CATGGACGCGTGGTTAATTTC 58.219 47.619 20.70 0.00 0.00 2.17
1573 1621 0.675208 ATGCATGGACGCGTGGTTAA 60.675 50.000 20.70 0.00 33.35 2.01
1592 1640 4.760878 TGATAGTACGGTTTTAGCATGCA 58.239 39.130 21.98 2.77 0.00 3.96
1593 1641 4.809426 ACTGATAGTACGGTTTTAGCATGC 59.191 41.667 10.51 10.51 0.00 4.06
1594 1642 6.903883 AACTGATAGTACGGTTTTAGCATG 57.096 37.500 0.00 0.00 36.14 4.06
1601 1649 6.755607 GCTAGCTAAAACTGATAGTACGGTTT 59.244 38.462 7.70 0.00 46.85 3.27
1602 1650 6.096564 AGCTAGCTAAAACTGATAGTACGGTT 59.903 38.462 17.69 0.00 40.50 4.44
1603 1651 5.593502 AGCTAGCTAAAACTGATAGTACGGT 59.406 40.000 17.69 0.00 0.00 4.83
1604 1652 6.074544 AGCTAGCTAAAACTGATAGTACGG 57.925 41.667 17.69 0.00 0.00 4.02
1605 1653 7.799447 CAGTAGCTAGCTAAAACTGATAGTACG 59.201 40.741 30.11 9.78 0.00 3.67
1606 1654 8.623030 ACAGTAGCTAGCTAAAACTGATAGTAC 58.377 37.037 36.09 20.30 29.95 2.73
1607 1655 8.749026 ACAGTAGCTAGCTAAAACTGATAGTA 57.251 34.615 36.09 11.15 29.95 1.82
1608 1656 7.648039 ACAGTAGCTAGCTAAAACTGATAGT 57.352 36.000 36.09 20.51 29.95 2.12
1609 1657 8.842280 AGTACAGTAGCTAGCTAAAACTGATAG 58.158 37.037 36.09 19.98 29.95 2.08
1625 1673 8.129211 CCCAATTAATAAAAGCAGTACAGTAGC 58.871 37.037 0.00 0.00 0.00 3.58
1626 1674 8.129211 GCCCAATTAATAAAAGCAGTACAGTAG 58.871 37.037 0.00 0.00 0.00 2.57
1627 1675 7.832187 AGCCCAATTAATAAAAGCAGTACAGTA 59.168 33.333 0.00 0.00 0.00 2.74
1628 1676 6.663523 AGCCCAATTAATAAAAGCAGTACAGT 59.336 34.615 0.00 0.00 0.00 3.55
1629 1677 7.100458 AGCCCAATTAATAAAAGCAGTACAG 57.900 36.000 0.00 0.00 0.00 2.74
1630 1678 7.201661 CGTAGCCCAATTAATAAAAGCAGTACA 60.202 37.037 0.00 0.00 0.00 2.90
1631 1679 7.130269 CGTAGCCCAATTAATAAAAGCAGTAC 58.870 38.462 0.00 0.00 0.00 2.73
1632 1680 6.824704 ACGTAGCCCAATTAATAAAAGCAGTA 59.175 34.615 0.00 0.00 0.00 2.74
1633 1681 5.650703 ACGTAGCCCAATTAATAAAAGCAGT 59.349 36.000 0.00 0.00 0.00 4.40
1636 1684 6.018832 TCGTACGTAGCCCAATTAATAAAAGC 60.019 38.462 16.05 0.00 0.00 3.51
1666 1733 3.385384 TCTCCTCGCACCTGGCAG 61.385 66.667 7.75 7.75 45.17 4.85
1764 1831 1.045407 ACTGGTAGGCTGTTTCACGA 58.955 50.000 0.00 0.00 0.00 4.35
1794 1861 1.805943 CTGATGATGCGGTTGACAACA 59.194 47.619 19.58 0.00 0.00 3.33
1797 1864 3.541996 ATACTGATGATGCGGTTGACA 57.458 42.857 0.00 0.00 0.00 3.58
1821 1888 1.369091 GATGGCGTGTAAGCACCTGG 61.369 60.000 0.00 0.00 42.39 4.45
1878 1945 6.072838 ACCTACACCTACGAATACGATACATG 60.073 42.308 0.00 0.00 42.66 3.21
1882 1949 4.756642 CCACCTACACCTACGAATACGATA 59.243 45.833 0.00 0.00 42.66 2.92
1898 1965 3.865745 CGATGACAGATGAAACCACCTAC 59.134 47.826 0.00 0.00 0.00 3.18
1899 1966 3.513912 ACGATGACAGATGAAACCACCTA 59.486 43.478 0.00 0.00 0.00 3.08
1900 1967 2.303022 ACGATGACAGATGAAACCACCT 59.697 45.455 0.00 0.00 0.00 4.00
1901 1968 2.699954 ACGATGACAGATGAAACCACC 58.300 47.619 0.00 0.00 0.00 4.61
1902 1969 4.260375 GCATACGATGACAGATGAAACCAC 60.260 45.833 0.00 0.00 0.00 4.16
1903 1970 3.871006 GCATACGATGACAGATGAAACCA 59.129 43.478 0.00 0.00 0.00 3.67
2024 2091 1.007336 GGTCGTAGTCTGCACGGTTG 61.007 60.000 0.00 0.00 39.82 3.77
2060 2127 3.513912 TCATGGAGAAGTCGTTGTACCAT 59.486 43.478 0.00 0.00 37.16 3.55
2101 2168 0.033504 GAGCCTGTTGACCTCGTTGA 59.966 55.000 0.00 0.00 0.00 3.18
2180 2247 4.437682 TCTGTGTGGGTTCTTGAAGATT 57.562 40.909 0.00 0.00 0.00 2.40
2188 2255 2.174639 TGACCAAATCTGTGTGGGTTCT 59.825 45.455 0.00 0.00 39.39 3.01
2232 2299 5.934402 AGTCCGCTTTAATTAGGAGAAGA 57.066 39.130 0.00 0.00 32.82 2.87
2244 2311 3.720949 ACGCATATGTAGTCCGCTTTA 57.279 42.857 4.29 0.00 0.00 1.85
2245 2312 2.596904 ACGCATATGTAGTCCGCTTT 57.403 45.000 4.29 0.00 0.00 3.51
2259 2326 2.876955 CGCATGGACCAAACGCAT 59.123 55.556 0.00 0.00 0.00 4.73
2262 2329 4.459331 CGGCGCATGGACCAAACG 62.459 66.667 10.83 13.60 0.00 3.60
2263 2330 4.776647 GCGGCGCATGGACCAAAC 62.777 66.667 29.21 0.00 0.00 2.93
2310 2378 1.345741 AGGATCACCGATACCTGCATG 59.654 52.381 0.00 0.00 41.83 4.06
2474 2542 1.311651 CGTATGGCCCATGCAACACA 61.312 55.000 12.50 0.00 40.13 3.72
2549 2617 2.018542 TAACAGGCCGATGCAAGTAC 57.981 50.000 0.00 0.00 40.13 2.73
2611 2679 1.571460 CGCACTGAGCCAGACAAAC 59.429 57.895 8.91 0.00 41.38 2.93
2619 2687 2.125512 ACGAATCCGCACTGAGCC 60.126 61.111 0.00 0.00 41.38 4.70
2625 2693 2.724349 AGTATTACGACGAATCCGCAC 58.276 47.619 0.00 0.00 39.95 5.34
2629 2697 4.615961 CGGATGAAGTATTACGACGAATCC 59.384 45.833 0.00 0.00 0.00 3.01
2635 2703 5.165911 TGAGACGGATGAAGTATTACGAC 57.834 43.478 0.00 0.00 0.00 4.34
2636 2704 7.500720 TTATGAGACGGATGAAGTATTACGA 57.499 36.000 0.00 0.00 0.00 3.43
2645 2713 9.537192 AACGTTTTATATTATGAGACGGATGAA 57.463 29.630 13.58 0.00 33.74 2.57
2646 2714 9.537192 AAACGTTTTATATTATGAGACGGATGA 57.463 29.630 7.96 0.00 33.74 2.92
2668 2736 6.669278 TCTCTCCGTCTCATGATATAAAACG 58.331 40.000 0.00 0.31 0.00 3.60
2687 2755 5.017294 AGTTAGCTTAATGGTGCTCTCTC 57.983 43.478 0.00 0.00 40.35 3.20
2690 2758 4.826274 TGAGTTAGCTTAATGGTGCTCT 57.174 40.909 0.00 0.00 40.35 4.09
2694 2762 6.238484 GGCAAGTATGAGTTAGCTTAATGGTG 60.238 42.308 0.00 0.00 0.00 4.17
2696 2764 6.058183 AGGCAAGTATGAGTTAGCTTAATGG 58.942 40.000 0.00 0.00 0.00 3.16
2697 2765 8.662781 TTAGGCAAGTATGAGTTAGCTTAATG 57.337 34.615 0.00 0.00 0.00 1.90
2701 2769 6.472887 TGTTTAGGCAAGTATGAGTTAGCTT 58.527 36.000 0.00 0.00 0.00 3.74
2703 2771 6.927294 ATGTTTAGGCAAGTATGAGTTAGC 57.073 37.500 0.00 0.00 0.00 3.09
2706 2774 9.899661 TTGTATATGTTTAGGCAAGTATGAGTT 57.100 29.630 0.00 0.00 0.00 3.01
2813 2914 9.710979 CGTGAAGTTTGACAAAGTTTATAGAAA 57.289 29.630 19.45 1.52 34.32 2.52
2814 2915 9.100554 TCGTGAAGTTTGACAAAGTTTATAGAA 57.899 29.630 19.45 4.51 34.32 2.10
2815 2916 8.651391 TCGTGAAGTTTGACAAAGTTTATAGA 57.349 30.769 19.45 15.59 34.32 1.98
2816 2917 9.370126 CTTCGTGAAGTTTGACAAAGTTTATAG 57.630 33.333 19.45 14.02 34.32 1.31
2833 2934 6.048073 TGACTGAAATCAAACTTCGTGAAG 57.952 37.500 8.04 8.04 43.79 3.02
2834 2935 6.093495 AGTTGACTGAAATCAAACTTCGTGAA 59.907 34.615 0.00 0.00 40.22 3.18
2835 2936 5.584649 AGTTGACTGAAATCAAACTTCGTGA 59.415 36.000 0.00 0.00 40.22 4.35
2836 2937 5.810525 AGTTGACTGAAATCAAACTTCGTG 58.189 37.500 0.00 0.00 40.22 4.35
2837 2938 5.817816 AGAGTTGACTGAAATCAAACTTCGT 59.182 36.000 1.69 0.00 40.22 3.85
2838 2939 6.292389 AGAGTTGACTGAAATCAAACTTCG 57.708 37.500 1.69 0.00 40.22 3.79
2842 2943 9.495754 GCATATTAGAGTTGACTGAAATCAAAC 57.504 33.333 0.00 0.00 40.22 2.93
2843 2944 9.230122 TGCATATTAGAGTTGACTGAAATCAAA 57.770 29.630 0.00 0.00 40.22 2.69
2844 2945 8.791327 TGCATATTAGAGTTGACTGAAATCAA 57.209 30.769 0.00 0.00 36.23 2.57
2845 2946 8.260114 TCTGCATATTAGAGTTGACTGAAATCA 58.740 33.333 0.00 0.00 30.70 2.57
2846 2947 8.654230 TCTGCATATTAGAGTTGACTGAAATC 57.346 34.615 0.00 0.00 0.00 2.17
2847 2948 8.659925 CTCTGCATATTAGAGTTGACTGAAAT 57.340 34.615 5.84 0.00 37.48 2.17
2889 2990 6.870439 GGGTGTTTCAGAAGTTACGTATACTT 59.130 38.462 17.38 17.38 38.49 2.24
2890 2991 6.015180 TGGGTGTTTCAGAAGTTACGTATACT 60.015 38.462 0.00 0.27 0.00 2.12
2891 2992 6.158598 TGGGTGTTTCAGAAGTTACGTATAC 58.841 40.000 0.00 0.00 0.00 1.47
2892 2993 6.343716 TGGGTGTTTCAGAAGTTACGTATA 57.656 37.500 0.00 0.00 0.00 1.47
2893 2994 5.217978 TGGGTGTTTCAGAAGTTACGTAT 57.782 39.130 0.00 0.00 0.00 3.06
2894 2995 4.669206 TGGGTGTTTCAGAAGTTACGTA 57.331 40.909 0.00 0.00 0.00 3.57
2895 2996 3.547054 TGGGTGTTTCAGAAGTTACGT 57.453 42.857 0.00 0.00 0.00 3.57
2896 2997 4.886247 TTTGGGTGTTTCAGAAGTTACG 57.114 40.909 0.00 0.00 0.00 3.18
2897 2998 8.106247 TGATATTTGGGTGTTTCAGAAGTTAC 57.894 34.615 0.00 0.00 0.00 2.50
2898 2999 8.573035 GTTGATATTTGGGTGTTTCAGAAGTTA 58.427 33.333 0.00 0.00 0.00 2.24
2899 3000 7.433680 GTTGATATTTGGGTGTTTCAGAAGTT 58.566 34.615 0.00 0.00 0.00 2.66
2900 3001 6.293955 CGTTGATATTTGGGTGTTTCAGAAGT 60.294 38.462 0.00 0.00 0.00 3.01
2901 3002 6.086222 CGTTGATATTTGGGTGTTTCAGAAG 58.914 40.000 0.00 0.00 0.00 2.85
2902 3003 5.533154 ACGTTGATATTTGGGTGTTTCAGAA 59.467 36.000 0.00 0.00 0.00 3.02
2903 3004 5.067273 ACGTTGATATTTGGGTGTTTCAGA 58.933 37.500 0.00 0.00 0.00 3.27
2904 3005 5.371115 ACGTTGATATTTGGGTGTTTCAG 57.629 39.130 0.00 0.00 0.00 3.02
2905 3006 5.776173 AACGTTGATATTTGGGTGTTTCA 57.224 34.783 0.00 0.00 0.00 2.69
2906 3007 6.921307 AGAAAACGTTGATATTTGGGTGTTTC 59.079 34.615 0.00 0.00 0.00 2.78
2907 3008 6.811954 AGAAAACGTTGATATTTGGGTGTTT 58.188 32.000 0.00 0.00 0.00 2.83
2908 3009 6.399639 AGAAAACGTTGATATTTGGGTGTT 57.600 33.333 0.00 0.00 0.00 3.32
2909 3010 6.399639 AAGAAAACGTTGATATTTGGGTGT 57.600 33.333 0.00 0.00 0.00 4.16
2910 3011 7.707774 AAAAGAAAACGTTGATATTTGGGTG 57.292 32.000 0.00 0.00 0.00 4.61
2911 3012 7.982354 TGAAAAAGAAAACGTTGATATTTGGGT 59.018 29.630 0.00 0.00 0.00 4.51
2912 3013 8.359060 TGAAAAAGAAAACGTTGATATTTGGG 57.641 30.769 0.00 0.00 0.00 4.12
2918 3019 9.640963 TTCCTTTTGAAAAAGAAAACGTTGATA 57.359 25.926 15.48 0.00 46.39 2.15
2936 3037 0.036875 AGACCGAGGGCTTCCTTTTG 59.963 55.000 0.00 0.00 41.93 2.44
2944 3045 0.539051 CTTTGATGAGACCGAGGGCT 59.461 55.000 0.00 0.00 0.00 5.19
2968 3069 3.081061 GTTTGGATGTATGGCTGTGTGA 58.919 45.455 0.00 0.00 0.00 3.58
2970 3071 3.153369 TGTTTGGATGTATGGCTGTGT 57.847 42.857 0.00 0.00 0.00 3.72
2983 3084 4.574892 TCGTCTAATGCTCAATGTTTGGA 58.425 39.130 0.00 0.00 0.00 3.53
2987 3088 5.078411 AGACTCGTCTAATGCTCAATGTT 57.922 39.130 0.00 0.00 38.35 2.71
2999 3100 5.808042 AATGTAAACGCTAGACTCGTCTA 57.192 39.130 6.61 6.61 40.93 2.59
3005 3106 9.982651 ATCATATACAAATGTAAACGCTAGACT 57.017 29.630 0.00 0.00 33.76 3.24
3045 3146 0.613260 AGAGTAGCATTTCACCGGCA 59.387 50.000 0.00 0.00 0.00 5.69
3047 3148 6.128007 ACAAATAAAGAGTAGCATTTCACCGG 60.128 38.462 0.00 0.00 0.00 5.28
3048 3149 6.842163 ACAAATAAAGAGTAGCATTTCACCG 58.158 36.000 0.00 0.00 0.00 4.94
3049 3150 7.816640 TGACAAATAAAGAGTAGCATTTCACC 58.183 34.615 0.00 0.00 0.00 4.02
3050 3151 9.282247 CATGACAAATAAAGAGTAGCATTTCAC 57.718 33.333 0.00 0.00 0.00 3.18
3058 3159 9.593134 AGTCTTAGCATGACAAATAAAGAGTAG 57.407 33.333 0.00 0.00 36.94 2.57
3078 3179 4.365514 TGTGAAAATGGCCAGAGTCTTA 57.634 40.909 13.05 0.00 0.00 2.10
3088 3189 4.771590 TGAGATGAGTTGTGAAAATGGC 57.228 40.909 0.00 0.00 0.00 4.40
3090 3191 7.591165 AGACATTGAGATGAGTTGTGAAAATG 58.409 34.615 0.00 0.00 36.73 2.32
3119 3220 7.687941 ATGATTATATAGCCGGAACTTTTGG 57.312 36.000 5.05 0.00 0.00 3.28
3121 3222 7.724061 ACCAATGATTATATAGCCGGAACTTTT 59.276 33.333 5.05 0.00 0.00 2.27
3128 3229 5.487433 TGACACCAATGATTATATAGCCGG 58.513 41.667 0.00 0.00 0.00 6.13
3129 3230 6.426633 TGTTGACACCAATGATTATATAGCCG 59.573 38.462 0.00 0.00 34.39 5.52
3151 3252 8.177663 CGTAAGATCAAAGATGCATTAGTTGTT 58.822 33.333 0.00 1.21 43.02 2.83
3191 3292 0.843309 TCCCTCTGCAGTTTTCCACA 59.157 50.000 14.67 0.00 0.00 4.17
3193 3294 2.517959 CATTCCCTCTGCAGTTTTCCA 58.482 47.619 14.67 0.00 0.00 3.53
3194 3295 1.821136 CCATTCCCTCTGCAGTTTTCC 59.179 52.381 14.67 0.00 0.00 3.13
3198 3299 2.026822 CACTACCATTCCCTCTGCAGTT 60.027 50.000 14.67 0.00 0.00 3.16
3202 3303 0.464554 GGCACTACCATTCCCTCTGC 60.465 60.000 0.00 0.00 38.86 4.26
3203 3304 1.134280 CAGGCACTACCATTCCCTCTG 60.134 57.143 0.00 0.00 43.14 3.35
3213 3314 3.618690 AAGATCACTTCAGGCACTACC 57.381 47.619 0.00 0.00 36.02 3.18
3216 3317 3.181471 CCGATAAGATCACTTCAGGCACT 60.181 47.826 0.00 0.00 36.95 4.40
3217 3318 3.126831 CCGATAAGATCACTTCAGGCAC 58.873 50.000 0.00 0.00 37.53 5.01
3222 3323 3.317993 TCATCGCCGATAAGATCACTTCA 59.682 43.478 0.00 0.00 37.53 3.02
3229 3330 2.562738 TCACCATCATCGCCGATAAGAT 59.437 45.455 0.00 0.00 0.00 2.40
3233 3334 2.479837 GTTTCACCATCATCGCCGATA 58.520 47.619 0.00 0.00 0.00 2.92
3255 3356 6.928492 GCAGAAGGTCTCTAGGATAAAATCAG 59.072 42.308 0.00 0.00 31.12 2.90
3258 3359 5.072464 GGGCAGAAGGTCTCTAGGATAAAAT 59.928 44.000 0.00 0.00 31.12 1.82
3259 3360 4.409247 GGGCAGAAGGTCTCTAGGATAAAA 59.591 45.833 0.00 0.00 31.12 1.52
3267 3368 6.099845 CCTAAAAATAGGGCAGAAGGTCTCTA 59.900 42.308 0.00 0.00 33.60 2.43
3268 3369 4.936685 AAAAATAGGGCAGAAGGTCTCT 57.063 40.909 0.00 0.00 33.23 3.10
3303 3405 4.210724 TGGCTTTTATAGGTGCTACGTT 57.789 40.909 0.00 0.00 0.00 3.99
3304 3406 3.899052 TGGCTTTTATAGGTGCTACGT 57.101 42.857 0.00 0.00 0.00 3.57
3305 3407 4.189231 ACTTGGCTTTTATAGGTGCTACG 58.811 43.478 0.00 0.00 0.00 3.51
3306 3408 4.575236 GGACTTGGCTTTTATAGGTGCTAC 59.425 45.833 0.00 0.00 0.00 3.58
3307 3409 4.473559 AGGACTTGGCTTTTATAGGTGCTA 59.526 41.667 0.00 0.00 0.00 3.49
3308 3410 3.267031 AGGACTTGGCTTTTATAGGTGCT 59.733 43.478 0.00 0.00 0.00 4.40
3309 3411 3.621558 AGGACTTGGCTTTTATAGGTGC 58.378 45.455 0.00 0.00 0.00 5.01
3310 3412 6.049790 GTCTAGGACTTGGCTTTTATAGGTG 58.950 44.000 0.00 0.00 0.00 4.00
3311 3413 5.965091 AGTCTAGGACTTGGCTTTTATAGGT 59.035 40.000 0.00 0.00 40.28 3.08
3312 3414 6.487299 AGTCTAGGACTTGGCTTTTATAGG 57.513 41.667 0.00 0.00 40.28 2.57
3325 3427 1.134965 GTGCATGCGAAGTCTAGGACT 60.135 52.381 14.09 0.00 45.64 3.85
3326 3428 1.281899 GTGCATGCGAAGTCTAGGAC 58.718 55.000 14.09 0.00 0.00 3.85
3327 3429 0.894835 TGTGCATGCGAAGTCTAGGA 59.105 50.000 14.09 0.00 0.00 2.94
3328 3430 1.863454 GATGTGCATGCGAAGTCTAGG 59.137 52.381 14.09 0.00 0.00 3.02
3329 3431 1.863454 GGATGTGCATGCGAAGTCTAG 59.137 52.381 14.09 0.00 0.00 2.43
3330 3432 1.482182 AGGATGTGCATGCGAAGTCTA 59.518 47.619 14.09 0.00 34.10 2.59
3331 3433 0.251354 AGGATGTGCATGCGAAGTCT 59.749 50.000 14.09 5.05 34.10 3.24
3332 3434 1.089920 AAGGATGTGCATGCGAAGTC 58.910 50.000 14.09 8.30 34.10 3.01
3333 3435 0.806868 CAAGGATGTGCATGCGAAGT 59.193 50.000 14.09 0.00 34.10 3.01
3334 3436 0.806868 ACAAGGATGTGCATGCGAAG 59.193 50.000 14.09 0.00 38.69 3.79
3335 3437 0.804364 GACAAGGATGTGCATGCGAA 59.196 50.000 14.09 3.58 40.74 4.70
3336 3438 1.026182 GGACAAGGATGTGCATGCGA 61.026 55.000 14.09 1.89 46.21 5.10
3337 3439 1.430632 GGACAAGGATGTGCATGCG 59.569 57.895 14.09 0.00 46.21 4.73
3343 3445 2.738846 CACTCGAAAGGACAAGGATGTG 59.261 50.000 0.00 0.00 40.74 3.21
3344 3446 2.872038 GCACTCGAAAGGACAAGGATGT 60.872 50.000 0.00 0.00 44.25 3.06
3345 3447 1.734465 GCACTCGAAAGGACAAGGATG 59.266 52.381 0.00 0.00 0.00 3.51
3346 3448 1.339151 GGCACTCGAAAGGACAAGGAT 60.339 52.381 0.00 0.00 0.00 3.24
3347 3449 0.034896 GGCACTCGAAAGGACAAGGA 59.965 55.000 0.00 0.00 0.00 3.36
3348 3450 0.035458 AGGCACTCGAAAGGACAAGG 59.965 55.000 0.00 0.00 0.00 3.61
3349 3451 2.028930 AGTAGGCACTCGAAAGGACAAG 60.029 50.000 0.00 0.00 41.75 3.16
3350 3452 1.968493 AGTAGGCACTCGAAAGGACAA 59.032 47.619 0.00 0.00 41.75 3.18
3351 3453 1.544691 GAGTAGGCACTCGAAAGGACA 59.455 52.381 2.19 0.00 41.79 4.02
3352 3454 2.281140 GAGTAGGCACTCGAAAGGAC 57.719 55.000 2.19 0.00 41.79 3.85
3361 3463 1.905215 AGTCATGCTTGAGTAGGCACT 59.095 47.619 8.12 0.00 41.39 4.40
3362 3464 2.005451 CAGTCATGCTTGAGTAGGCAC 58.995 52.381 9.43 0.00 41.39 5.01
3363 3465 1.065926 CCAGTCATGCTTGAGTAGGCA 60.066 52.381 9.43 0.00 42.80 4.75
3364 3466 1.661341 CCAGTCATGCTTGAGTAGGC 58.339 55.000 9.43 0.00 33.64 3.93
3365 3467 1.556911 ACCCAGTCATGCTTGAGTAGG 59.443 52.381 16.90 16.90 39.29 3.18
3366 3468 2.625737 CACCCAGTCATGCTTGAGTAG 58.374 52.381 9.43 7.21 33.64 2.57
3367 3469 1.339055 GCACCCAGTCATGCTTGAGTA 60.339 52.381 9.43 0.00 38.84 2.59
3368 3470 0.607489 GCACCCAGTCATGCTTGAGT 60.607 55.000 1.91 3.12 38.84 3.41
3369 3471 1.642037 CGCACCCAGTCATGCTTGAG 61.642 60.000 1.91 0.00 39.79 3.02
3370 3472 1.672030 CGCACCCAGTCATGCTTGA 60.672 57.895 0.00 0.00 39.79 3.02
3371 3473 2.693762 CCGCACCCAGTCATGCTTG 61.694 63.158 0.00 0.00 39.79 4.01
3372 3474 2.202236 ATCCGCACCCAGTCATGCTT 62.202 55.000 0.00 0.00 39.79 3.91
3373 3475 2.599645 GATCCGCACCCAGTCATGCT 62.600 60.000 0.00 0.00 39.79 3.79
3374 3476 2.124570 ATCCGCACCCAGTCATGC 60.125 61.111 0.00 0.00 38.52 4.06
3375 3477 1.524621 GGATCCGCACCCAGTCATG 60.525 63.158 0.00 0.00 0.00 3.07
3376 3478 0.398522 TAGGATCCGCACCCAGTCAT 60.399 55.000 5.98 0.00 0.00 3.06
3377 3479 0.616395 TTAGGATCCGCACCCAGTCA 60.616 55.000 5.98 0.00 0.00 3.41
3378 3480 0.105039 CTTAGGATCCGCACCCAGTC 59.895 60.000 5.98 0.00 0.00 3.51
3379 3481 1.338136 CCTTAGGATCCGCACCCAGT 61.338 60.000 5.98 0.00 0.00 4.00
3380 3482 1.447643 CCTTAGGATCCGCACCCAG 59.552 63.158 5.98 0.00 0.00 4.45
3381 3483 2.742116 GCCTTAGGATCCGCACCCA 61.742 63.158 5.98 0.00 0.00 4.51
3382 3484 2.111251 GCCTTAGGATCCGCACCC 59.889 66.667 5.98 0.00 0.00 4.61
3383 3485 2.111251 GGCCTTAGGATCCGCACC 59.889 66.667 5.98 1.24 0.00 5.01
3384 3486 2.056906 ATGGGCCTTAGGATCCGCAC 62.057 60.000 5.98 5.29 0.00 5.34
3385 3487 0.472925 TATGGGCCTTAGGATCCGCA 60.473 55.000 5.98 0.00 0.00 5.69
3386 3488 0.250513 CTATGGGCCTTAGGATCCGC 59.749 60.000 16.70 3.18 0.00 5.54
3387 3489 1.550976 GTCTATGGGCCTTAGGATCCG 59.449 57.143 22.28 1.51 0.00 4.18
3388 3490 2.621070 TGTCTATGGGCCTTAGGATCC 58.379 52.381 22.28 2.48 0.00 3.36
3389 3491 4.917906 AATGTCTATGGGCCTTAGGATC 57.082 45.455 22.28 14.72 0.00 3.36
3390 3492 4.416848 ACAAATGTCTATGGGCCTTAGGAT 59.583 41.667 22.28 13.70 0.00 3.24
3391 3493 3.785887 ACAAATGTCTATGGGCCTTAGGA 59.214 43.478 22.28 12.29 0.00 2.94
3392 3494 4.170468 ACAAATGTCTATGGGCCTTAGG 57.830 45.455 22.28 10.43 0.00 2.69
3393 3495 5.163195 ACCTACAAATGTCTATGGGCCTTAG 60.163 44.000 18.04 18.04 0.00 2.18
3394 3496 4.724798 ACCTACAAATGTCTATGGGCCTTA 59.275 41.667 4.53 1.19 0.00 2.69
3395 3497 3.527665 ACCTACAAATGTCTATGGGCCTT 59.472 43.478 4.53 0.00 0.00 4.35
3396 3498 3.117888 CACCTACAAATGTCTATGGGCCT 60.118 47.826 4.53 0.00 0.00 5.19
3397 3499 3.214328 CACCTACAAATGTCTATGGGCC 58.786 50.000 0.00 0.00 0.00 5.80
3398 3500 3.118038 TCCACCTACAAATGTCTATGGGC 60.118 47.826 8.96 0.00 0.00 5.36
3399 3501 4.164221 AGTCCACCTACAAATGTCTATGGG 59.836 45.833 8.96 0.00 0.00 4.00
3400 3502 5.359194 AGTCCACCTACAAATGTCTATGG 57.641 43.478 0.00 0.00 0.00 2.74
3401 3503 6.406370 TCAAGTCCACCTACAAATGTCTATG 58.594 40.000 0.00 0.00 0.00 2.23
3402 3504 6.620877 TCAAGTCCACCTACAAATGTCTAT 57.379 37.500 0.00 0.00 0.00 1.98
3403 3505 6.351881 GGATCAAGTCCACCTACAAATGTCTA 60.352 42.308 0.00 0.00 46.96 2.59
3404 3506 4.974645 TCAAGTCCACCTACAAATGTCT 57.025 40.909 0.00 0.00 0.00 3.41
3405 3507 4.636206 GGATCAAGTCCACCTACAAATGTC 59.364 45.833 0.00 0.00 46.96 3.06
3406 3508 4.589908 GGATCAAGTCCACCTACAAATGT 58.410 43.478 0.00 0.00 46.96 2.71
3419 3521 2.703416 TCAGTGTGCATGGATCAAGTC 58.297 47.619 0.00 0.00 0.00 3.01
3420 3522 2.865119 TCAGTGTGCATGGATCAAGT 57.135 45.000 0.00 0.00 0.00 3.16
3421 3523 4.880120 AGTTATCAGTGTGCATGGATCAAG 59.120 41.667 0.00 0.00 0.00 3.02
3422 3524 4.847198 AGTTATCAGTGTGCATGGATCAA 58.153 39.130 0.00 0.00 0.00 2.57
3423 3525 4.080975 TGAGTTATCAGTGTGCATGGATCA 60.081 41.667 0.00 0.00 0.00 2.92
3424 3526 4.272018 GTGAGTTATCAGTGTGCATGGATC 59.728 45.833 0.00 0.00 35.66 3.36
3425 3527 4.194640 GTGAGTTATCAGTGTGCATGGAT 58.805 43.478 0.00 0.00 35.66 3.41
3426 3528 3.007831 TGTGAGTTATCAGTGTGCATGGA 59.992 43.478 0.00 0.00 35.66 3.41
3427 3529 3.337358 TGTGAGTTATCAGTGTGCATGG 58.663 45.455 0.00 0.00 35.66 3.66
3428 3530 4.453478 ACTTGTGAGTTATCAGTGTGCATG 59.547 41.667 0.00 0.00 35.66 4.06
3429 3531 4.645535 ACTTGTGAGTTATCAGTGTGCAT 58.354 39.130 0.00 0.00 35.66 3.96
3430 3532 4.071961 ACTTGTGAGTTATCAGTGTGCA 57.928 40.909 0.00 0.00 35.66 4.57
3431 3533 7.010552 CCTTATACTTGTGAGTTATCAGTGTGC 59.989 40.741 0.00 0.00 35.66 4.57
3432 3534 7.492669 CCCTTATACTTGTGAGTTATCAGTGTG 59.507 40.741 0.00 0.00 35.66 3.82
3433 3535 7.399191 TCCCTTATACTTGTGAGTTATCAGTGT 59.601 37.037 0.00 0.00 35.66 3.55
3434 3536 7.782049 TCCCTTATACTTGTGAGTTATCAGTG 58.218 38.462 0.00 0.00 35.66 3.66
3435 3537 7.973048 TCCCTTATACTTGTGAGTTATCAGT 57.027 36.000 0.00 0.00 35.66 3.41
3436 3538 7.810282 CGATCCCTTATACTTGTGAGTTATCAG 59.190 40.741 0.00 0.00 35.66 2.90
3437 3539 7.287005 ACGATCCCTTATACTTGTGAGTTATCA 59.713 37.037 0.00 0.00 37.33 2.15
3438 3540 7.659186 ACGATCCCTTATACTTGTGAGTTATC 58.341 38.462 0.00 0.00 37.33 1.75
3439 3541 7.598759 ACGATCCCTTATACTTGTGAGTTAT 57.401 36.000 0.00 0.00 37.33 1.89
3440 3542 8.523915 TTACGATCCCTTATACTTGTGAGTTA 57.476 34.615 0.00 0.00 37.33 2.24
3441 3543 5.934402 ACGATCCCTTATACTTGTGAGTT 57.066 39.130 0.00 0.00 37.33 3.01
3442 3544 7.598759 ATTACGATCCCTTATACTTGTGAGT 57.401 36.000 0.00 0.00 39.97 3.41
3443 3545 8.794553 ACTATTACGATCCCTTATACTTGTGAG 58.205 37.037 0.00 0.00 0.00 3.51
3444 3546 8.701908 ACTATTACGATCCCTTATACTTGTGA 57.298 34.615 0.00 0.00 0.00 3.58
3449 3551 9.896645 TCGAATACTATTACGATCCCTTATACT 57.103 33.333 0.00 0.00 0.00 2.12
3451 3553 9.334947 CCTCGAATACTATTACGATCCCTTATA 57.665 37.037 0.00 0.00 34.41 0.98
3452 3554 7.284944 CCCTCGAATACTATTACGATCCCTTAT 59.715 40.741 0.00 0.00 34.41 1.73
3453 3555 6.600822 CCCTCGAATACTATTACGATCCCTTA 59.399 42.308 0.00 0.00 34.41 2.69
3454 3556 5.418209 CCCTCGAATACTATTACGATCCCTT 59.582 44.000 0.00 0.00 34.41 3.95
3455 3557 4.948621 CCCTCGAATACTATTACGATCCCT 59.051 45.833 0.00 0.00 34.41 4.20
3456 3558 4.704057 ACCCTCGAATACTATTACGATCCC 59.296 45.833 0.00 0.00 34.41 3.85
3457 3559 5.893897 ACCCTCGAATACTATTACGATCC 57.106 43.478 0.00 0.00 34.41 3.36
3458 3560 7.840342 TCTACCCTCGAATACTATTACGATC 57.160 40.000 0.00 0.00 34.41 3.69
3459 3561 8.804912 ATTCTACCCTCGAATACTATTACGAT 57.195 34.615 0.00 0.00 34.41 3.73
3460 3562 9.896645 ATATTCTACCCTCGAATACTATTACGA 57.103 33.333 0.00 0.00 36.50 3.43
3466 3568 8.800332 GGTTGAATATTCTACCCTCGAATACTA 58.200 37.037 28.57 0.00 44.06 1.82
3467 3569 7.668492 GGTTGAATATTCTACCCTCGAATACT 58.332 38.462 28.57 0.00 44.06 2.12
3468 3570 7.886405 GGTTGAATATTCTACCCTCGAATAC 57.114 40.000 28.57 8.81 44.06 1.89
3485 3587 9.184523 TGTCGAATCTATAAATTTGGGTTGAAT 57.815 29.630 0.00 0.00 0.00 2.57
3486 3588 8.455682 GTGTCGAATCTATAAATTTGGGTTGAA 58.544 33.333 0.00 0.00 0.00 2.69
3487 3589 7.608376 TGTGTCGAATCTATAAATTTGGGTTGA 59.392 33.333 0.00 0.00 0.00 3.18
3488 3590 7.757526 TGTGTCGAATCTATAAATTTGGGTTG 58.242 34.615 0.00 0.00 0.00 3.77
3489 3591 7.931578 TGTGTCGAATCTATAAATTTGGGTT 57.068 32.000 0.00 0.00 0.00 4.11
3490 3592 7.067008 CCTTGTGTCGAATCTATAAATTTGGGT 59.933 37.037 0.00 0.00 0.00 4.51
3491 3593 7.417612 CCTTGTGTCGAATCTATAAATTTGGG 58.582 38.462 0.00 0.00 0.00 4.12
3492 3594 7.417612 CCCTTGTGTCGAATCTATAAATTTGG 58.582 38.462 0.00 0.00 0.00 3.28
3493 3595 7.282224 TCCCCTTGTGTCGAATCTATAAATTTG 59.718 37.037 0.00 0.00 0.00 2.32
3494 3596 7.343357 TCCCCTTGTGTCGAATCTATAAATTT 58.657 34.615 0.00 0.00 0.00 1.82
3495 3597 6.895782 TCCCCTTGTGTCGAATCTATAAATT 58.104 36.000 0.00 0.00 0.00 1.82
3496 3598 6.494666 TCCCCTTGTGTCGAATCTATAAAT 57.505 37.500 0.00 0.00 0.00 1.40
3497 3599 5.684030 GCTCCCCTTGTGTCGAATCTATAAA 60.684 44.000 0.00 0.00 0.00 1.40
3498 3600 4.202223 GCTCCCCTTGTGTCGAATCTATAA 60.202 45.833 0.00 0.00 0.00 0.98
3499 3601 3.321111 GCTCCCCTTGTGTCGAATCTATA 59.679 47.826 0.00 0.00 0.00 1.31
3500 3602 2.103263 GCTCCCCTTGTGTCGAATCTAT 59.897 50.000 0.00 0.00 0.00 1.98
3501 3603 1.480954 GCTCCCCTTGTGTCGAATCTA 59.519 52.381 0.00 0.00 0.00 1.98
3502 3604 0.250513 GCTCCCCTTGTGTCGAATCT 59.749 55.000 0.00 0.00 0.00 2.40
3503 3605 0.744771 GGCTCCCCTTGTGTCGAATC 60.745 60.000 0.00 0.00 0.00 2.52
3504 3606 1.299976 GGCTCCCCTTGTGTCGAAT 59.700 57.895 0.00 0.00 0.00 3.34
3505 3607 2.747686 GGCTCCCCTTGTGTCGAA 59.252 61.111 0.00 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.