>input_sequence_49271
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----------------------------------------------------------------------------ATGG
CCTCGGAGCGTCAAGGACACCGTTCCATTTCCTCGTGCATCCTCCTCGTCGCGGCCGTCCTACTGCTCAGCGCTCCCAGG
TCATCTGCTAGTTGCTACAAGCGCATCTTCGCCTTCGGCGACTCCATCATCGACACCGGCAACTTCGTGTACTCGACCGG
CAGCGCTCCAAACGCGCTGAAGGAGTTCCCATATGGGATGACCTTCTTCCACCACCCCACAGGCCGCGTCTGTGACGGGC
GCGTCCTCCTTGATTTCTACGGTGAGTGCAGTGCACAGCACATGCATGGATCTAGCTACCTCTT-----------TAGTG
TCCGGCTGTGCTGACAACTGTGTCCGTACGTGTTGCAGCGCAAGCGCTGGGTCTGCCGCTGGTACAGCCAAGCTTGCCCG
AGCAGAGATGGGGACAATGCACATTCGGTGCCAACTTCGCGGTGTTTGCTGCCACGGCGCTTCCCCCGGAGTACTTCCAA
AGACGGGGCCTTAGTATTCCCGGGTCTGCCAACTTGGGCATGCAGATGGGCTGGTTCAAAGAAGTGGTGCAACGGATAGC
ACCAGGGCCCGGTAATGAAATTAACCACGCGTCCATGCATGCATGCTAAAACCGTACTATCAGTTTTAGCTAGCTACTGT
ACTGCT-------------------TTTATTAATTGGGCTACGTACGATGATCTGCCAGGTGCGAGGAGACTCCTGGGAG
AGTCTCTCATCATATTGGGCGAGATCGGTGGCAACGACTACAACTTCTGGTTACTCAACAATAATAAAACTCGTGAAACA
GCCTACCAGTTCATCCCAGATGTTGTCAACCGCATCATCAGTATTGCCCAGGTGCTTACACGCCATCAATTAGCCTGTAC
AAACAAATCATGCATTTATACATCCATGTATCGTATTCGTAGGTGTAGGTGGTTTCATCTGTCATCGTATGCATGCAGGA
GCTCATCGACCTCGGCGCGAAGACGATCATGATCCCGGGGAACTTCCCCATCGGGTGCGTGCCCAAGTACCTGAACGACC
ACCAGACGGGCAACCGTGCAGACTACGACCAGTTCGGCTGCCTCAGATGGTACAACGACTTCTCCATGAGGCACAACACG
GCGCTGTTCAACGAGGTCAACAGGCTCAGAGCGCGGCATCCATGGGTGAAGCTCATCTACGCCGACTACTTCGGCGCCGC
CATGGAAATCTTCAAGAACCCACACAGATTTGGTCAGTAACCGACGCCCGATCGCATTTCTTCTCCTAATTAAAGCGGAC
TACATATGCGTTTGG-TCCATGCGCCGCGCTCATTGCTCGATCGTTTTGCGTTTGGGCATGCAGGTATCGGTGATCCTCT
GGTGGCATGCTGCGGCGGCGGTGGCCGGTACCACGTCGGGACATGCGACAAGCACTCCGCTATTATGGGTTCCCCGGCTA
ACTGCGCCAATTGGGACGGCATCCACATGACTGAGAAGGCCTACAACGTCATCGCCGATGGTGTGTTGCATGGGCCATAC
GCGAACCCGGCGCTGTTGCATTCTTGCTAG--------------------------------------------------
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>chr3A_1_TraesCS3A01G235100
TTCTTCTCTATTCTTGTCCAGAATTTGCATTTCCATTTGATGTCAAGTTCATCTTGATTTTATTTTCAACCAAAGTCTAT
ATTTTTGTCGTCCGAAATAAGTTTTTTTAGTTC--ATTGAGAATCAATTGTGAAAATATGCA--TTTTTTTAAAAACAAA
TGTATAACTATTGTCCTTATTTTGTTTTCTACAATTGTCTTGATAATTGCCCTCATTGCAATTGGATTTTCTTTCAAATA
TGTTCTAACCTGTTATTAAAATCCATTCCTGAAACCTACCACATGTTAACATTTATATAACATTGTGTGCGCCTTTCTAT
TGGATGCACATCTGTTGGCTAGTGCCATCTATTTGTAAAAGTGTTGG-ATATACATTGTAGCTTCTTAATTTAGAACATT
TGTAGCGC---TTTTTGTACAGAGATAACCAGTGGGCCAGTTCGGCAGTTT-----------------ATATATATGAAG
AATATCATTTTCACAGTAATATTATGTCATTATGATAGATATATGTGCATATTAATGTATATGCCACGATGCAATTAATA
TATGTGCCCACGTGTGATTTGATATCATATACTTCCTCCATCCCATAACATAAGATCTTATTAGATCCAATATACTCACG
TATTGAATGTAATAAGATCTTATGAGACGGCAGTATATTGAATGTAATAAGATTTTATATTATGGGACAAATGGAGTATC
TTGAATTACTGTACTGCATTATTAAGATTATGGCCG------GCGAAGAAATTATTCATCAAACGTTATAAATAGAGGAT
ATAAATCTCAAAAAAA--TATAGAGGATATAAATCAATCATTTAGATACATAAGAA---AAGAGAAATGCAAGAAATGTA
TCTTCACGATGTCACCGTACTCACTGCCATCGTATCTACCACTGCTAGTAGAATTCGGCCTGAAGATGCTATAAAAAGGA
GGGCAAATGAACTCCTTCGGATCACAAACCAGTCACCGTGTCAGCCTGCAAACGTTGTAGCAACAACAGTGTCTCGATGG
CCTCGGAGCGTCAAGGACACCGTTCCATTTCCTCGTGCATCCTCCTCGTCGCGGCCGTCCTACTGCTCAGCGCTCCCAGG
TCATCTGCTAGTTGCTACAAGCGCATCTTCGCCTTCGGCGACTCCATCATCGACACCGGCAACTTCGTGTACTCGACCGG
CAGCGCTCCAAACGCGCTGAAGGAGTTCCCATATGGGATGACCTTCTTCCACCACCCCACAGGCCGCGTCTGTGACGGGC
GCGTCCTCCTTGATTTCTACGGTGAGTGCAGTGCACAGCACATGCATGGATCTAGCTACCTCTT-----------TAGTG
TCCGGCTGTGCTGACAACTGTGTCCGTACGTGTTGCAGCGCAAGCGCTGGGTCTGCCGCTGGTACAGCCAAGCTTGCCCG
AGCAGAGATGGGGACAATGCACATTCGGTGCCAACTTCGCGGTGTTTGCTGCCACGGCGCTTCCCCCGGAGTACTTCCAA
AGACGGGGCCTTAGTATTCCCGGGTCTGCCAACTTGGGCATGCAGATGGGCTGGTTCAAAGAAGTGGTGCAACGGATAGC
ACCAGGGCCCGGTAATGAAATTAACCACGCGTCCATGCATGCATGCTAAAACCGTACTATCAGTTTTAGCTAGCTACTGT
ACTGCT-------------------TTTATTAATTGGGCTACGTACGATGATCTGCCAGGTGCGAGGAGACTCCTGGGAG
AGTCTCTCATCATATTGGGCGAGATCGGTGGCAACGACTACAACTTCTGGTTACTCAACAATAATAAAACTCGTGAAACA
GCCTACCAGTTCATCCCAGATGTTGTCAACCGCATCATCAGTATTGCCCAGGTGCTTACACGCCATCAATTAGCCTGTAC
AAACAAATCATGCATTTATACATCCATGTATCGTATTCGTAGGTGTAGGTGGTTTCATCTGTCATCGTATGCATGCAGGA
GCTCATCGACCTCGGCGCGAAGACGATCATGATCCCGGGGAACTTCCCCATCGGGTGCGTGCCCAAGTACCTGAACGACC
ACCAGACGGGCAACCGTGCAGACTACGACCAGTTCGGCTGCCTCAGATGGTACAACGACTTCTCCATGAGGCACAACACG
GCGCTGTTCAACGAGGTCAACAGGCTCAGAGCGCGGCATCCATGGGTGAAGCTCATCTACGCCGACTACTTCGGCGCCGC
CATGGAAATCTTCAAGAACCCACACAGATTTGGTCAGTAACCGACGCCCGATCGCATTTCTTCTCCTAATTAAAGCGGAC
TACATATGCGTTTGG-TCCATGCGCCGCGCTCATTGCTCGATCGTTTTGCGTTTGGGCATGCAGGTATCGGTGATCCTCT
GGTGGCATGCTGCGGCGGCGGTGGCCGGTACCACGTCGGGACATGCGACAAGCACTCCGCTATTATGGGTTCCCCGGCTA
ACTGCGCCAATTGGGACGGCATCCACATGACTGAGAAGGCCTACAACGTCATCGCCGATGGTGTGTTGCATGGGCCATAC
GCGAACCCGGCGCTGTTGCATTCTTGCTAGAGTTGTTGATTGCTCGCTTTGTTCCCGTACTTGCATCGGCCTGTTAACTG
AATGAAAGAAATAAAATAGTCAACTAAACAGTATAGTAGTTTGTCTGGCTCAGTGCGGATTCGTCGTAATACTTCATCCG
TCTCATAATATAAAACGTTTTATATCATGAGACGGAGAGAGCACCATTAAGCTAACT-----------------------
----------CATACTTGCCTAAACATATACAATAACTGATCAGTATTATTAGATTTATTATTAAATATACTTTCACATC
ATATAAATTTGTTTAAGTAAATATTTCTACGTTTTTCTATAAACTTTGTCAAACTTCACGAAGTTTGATTTCAGTCAACT
CTAATATGCAGAGTAAATAAAAATAGAAGAAGTATACGTAACTTCTGAAACACCCAAATATCAACGTTTTCTTTTTCAAA
AGGAAGCCCTCGGTCTCATCAAAGTGATTCACACAGCCATACATCCAAACATTGAGCATTAGACGAGTCTAGCGTTTACA
TTTGTATATGATACTCTCTCTTTTTTGCCGGTGAAATGCTACTCTTTATTTGTCATGCTAAGACTCTGGCCATTTTCACA
ACTCATCTCAATGTCTCACCCAAAAGTTCCGGCTATATAATCATTGGTGTCAACAACTAATGCATCTTTGATCTTACGAT
TTACTAGAGATTGTGGAAAACTGCAGAGGGAATGGTAGTGCCTGAAGTGATCTTATCGGCGATGATGGTGAAACGCTGAT
TTTATCCTA-GAGACCTTCTGCCCTATTTTTAGGTTGACATGTGAACGTAGCACCTATAAAAGCCAAGTCCTAGACTTCG
CATGCACATCCTTGTCCTTTCGAGTGCCTACTCAAGCATGACTGGGTGCGGATCCTAAGGCCCATAGACATTTGTAGGTG
GACTTGATCCATGCACACTGATAACTCACAAGTATAAGGGATCGTAATAGTATTCGAGGGTAGAATATTCAACCCAAATT
TATAGATTCGACACAAGGGGAGCC
>chr3D_1
TTCTTCTCTATTCTTGTCCAGAATTTGCATTTCCATTTGATATCAAGTTCATCTTGATTTTATTTTCAACCAAAGTCTAT
ATTTTTGTCGTCCCAAATAAGTTTTGTTTGAAGTTATTGAGGATCGGTTGTGAAAAATATGCATTTTTTTCAAAAACAAA
TGTATAACTATCTTCCTTATTTTGTTTTCGACAATTGTCTTAATAATTGCCCTCATTGCAATTGGATTTTCTTTCAAATA
TGTTCTAACCTATTATTAGAATCCATTCCTGAAACCTACCACATGTTAACATTTATATAACATTGTGTGCGTCTTTCTAT
CGGATGCACATCTGTTGGCTAGTGGCATCCATTTGTAGAAGTGTTGGAATATACATTGTAGCTTCTTAATTTAGAACATT
TGTAGGGTTTTTTTTTGTACAAATATAACCAATGGGCCAGTTCGGCAGTTTCTAGAGTCAACCAGTGGATATATATGAAG
AATATCATTTTCATAGTAATATTATGTCATTATAATAGATATATGTGCATATTAATGTATATGCCATGGTACAATTAATG
TATGTGCCCTCGTTCGATTTGATATCATCGG-------------------------------------------------
-----------------------------------------ATGTAATAAGATTTTATATTATGGGACGGAGAGAGTATC
TTGAATTATTGAACTGTATTATTAAGATTAAGGGCTGGCGACGCGAAGAAATTATTCGTCAAACTTTATATATAGAGGAT
ATAAATCTCAAAAAAAAATATAGAGGATACAAATCTATCGTTTAGATACATAACAAAAGAAGAGAAACGCAAGAAATGTA
TCTTCAGGATATCGGTGTACTCACTGCCATCGTATTTACCCCTGCTAGTAGAATTCGGCCTGAAGATGCTATAAAAAGGA
GGTCAAATGAACTACTTCGGATCACAAACCAGTCACCGTGTCAGCCTGCAAACGTTGTAGCAACAGCAGTGTCTCGATGG
CCTCGGAGCGTCGAGGACACCGTTCCATTTCCTCGTGCATCCTCCTCGTCGCGGTCGTCCTGCTGCTCAGCGCTCCCGGG
TCATCTGCTAGTTGCTACAAGCGCATCTTCTCCTTCGGCGACTCCATCATCGACACCGGCAACTTCGTGTATTCGACCGG
CAGCGCTCCAAACGCGTTGAAGGAGTTCCCATATGGGATGACCTTCTTCCACCACCCCACAGGCCGCGTCTGTGACGGGC
GCGTCCTCCTTGATTTCTACGGTGAGTGCAGTGCACAGCACATG----GATATAGCTACCTCTTTGTGCTCACAATAGTG
TCTGGCTGTGCTGACAACTGTGTCCGTACGTGTTGCAGCGCAAGCGCTGGGTCTGCCGCTGGTACAGCCAAGCTTGCCCG
AGCAGAGATCGGGACAATGCACATTCGGTGCCAACTTCGCAGTGTTTGCTGCCACGGCGCTTCCCC-GGAGTACTTCAAA
AGATGGGGCCTTGGTATTCCCGGGTCTGCCAACCTGGGCATGCAGATGGGCTGGTTCAAAGAAGTATTACAACGGATAGC
ACCAGGGCCCGGTAATCAAACTAACCACGGGGTTTAGCA------------------TATCAGTTTTAGTTACTAGAGTA
GCTACTAGTACATGATAAGTACTGCTTTATTAATTGGGCTACGTACGATGATGTGCCAGGTGCGAGGAGACTCCTGGGAG
AGTCTCTCATCATATTGGGCGAGATCGGTGGCAACGACTACAACTTCTGGTTACTCAACAATAATAAAACACGTGAAACA
GCCTACCAGTTCATCCCAGACGTAGTCAACCGCATCATCAGTATTGCTCAGGTGCTTACACGCCATCAATTAGCCAGTAC
AAACAAATCATGCATATATACATCAATGCATCGTATTCGTAGGT------GGTTTCATCTGTCATCGTATGCATGCAGGA
GCTCATCGACCTCGGCGCGAAGACGATCATGATCCCGGGGAACTTCCCCATCGGGTGCGTGCCCAAGTACCTGAACGATC
ACCAGACGGGTAACCGTGCAGACTACGACCAGTTCGGCTGCCTCAGGTGGTACAACGACTTCTCCATGAGGCACAACACG
GCGCTGTCCAACGAGGTCAACAGGCTCAGGGCGCGGCATCCATGGGTGAAGCTCATCTACGCCGACTACTTCGGCGCCGC
CATGGAGATCTTCAGGAACCCACACAGATTTGGTCAGTAACCGACGCCCGATCGCATTCCTTCTCCTAATCTAAGCGGAC
TACATGTGTATTTGGTTCCATGCGCCGCGCTCATTGCTCGACCGTTTTGCGTTTGGGAATGCAGGTATCGGTGATCCTCT
GGTGGCATGCTGCGGCGGCGGTGGCCGGTACCACGTCGGGACATGCGACAAGCACTCCACTATTATGGGTTCCCCGGCTA
ACTGCGCCAATTGGGACGGCATCCACATGACTGAGAAGGCCTACAACGTCATCGCCGATGGGGTGTTGCATGGGCCGTAC
GCGAACCCGCCGCTGTTGCATTCTTGCTAGAGTTGTTGATTGCTCGCTTTGTTCCCATACTTGCATCGGCCTGTGAACTG
AATGAAAGAAATAAAATAGTCAACTAAACAGTATAGTACTTTGTCTTGCTCAATGCAGATTCACCGTAGTACACCCTCCG
TCTCATAATATAAAATGTTTTATATCATGAGACGAAGGGAGTATTATTTAAGCTAATCGTCATACTCGCCTAAACCCTTG
TTTCAAAAAACATACTCGCCTAAACACAATACAACTTCGAAGCGCGCACATACACGTATAAATACA--------------
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-----------------------------------------------------CCAAACATCAACGTTTTCTTTTTGAAA
AGGAGGCCCTCGGTCTCATCAAAGTGATGCGCACAGCCATACACCCAGACATTGAGCATGAGACGGGTCTAGCGTTTACA
TT-GTAAATGACACTCTCTTTTTTTCGGA--TGAAATGATACTCTTTATTTGTCATGCCAAGACTCTGACAATTTTCACA
ACTCATCTCAATGTCTCACTCCAAAGTTTGGGCTATATAATCATTGGTGTCGACGACTAATGCATCTC-GATCTTACGAT
TTACTAGAGATCGCAGAAGACTATAGAGGGAATAGTTATGCCCGAAGTGGTCTCATCGGCGATGATGGTGAAACGGTGGC
TTTATCCCTGGAGACCTTCTGCCCTATTTTTAGGTTGACATGTG------------------------------------
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>SNPs
-----------------------------------------S--------------------------------------
-------------S-----------S--S-SSS--------S---SS---------SSSSSS--------S---------
-----------SS----------------S-----------S--------------------------------------
-----------S------S----------------------------------------------------S--------
S-----------------------S----S-------S------------------------------------------
-----S-S-------------S-S-------S------------------------------------------------
-------------S-------------------S--------------------------------S-S-S--------S
---------S---SS-------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------SS-SS-------
--------S--S----S-------------S--S-S---------------------S------S-----S---------
-----------------------------S-----S---S-------------S-------------S------------
------S---S--SSS-------------------S----S---------------------------------------
--S----------S---------------------------------------------------S--------------
------------S-----------------------------------------S------S---------------S--
------------------------------S----------------------------------------S--------
----------------S---------------------------------------------------------------
--------------------------------------------SSSS---S----------------------------
--S-----------------------------------------------------------------------------
---------S------------------------------S-------------------------S----------S--
---S--------S--------------------S-------------------------------SS-S-----------
----------------S---S--------S-SSSSS---SSSSSSSSSSSSSSSSSS------------S--SSSSSSSS
S--S------------------------------------------------S---------------------------
----------------------------------------------------------------------S---------
--------------------S--S-----------------------S---------------------------S----
---------------S--------S---S---------------SSSSSS------------------------------
------------------------------------------------------------------------------S-
----------S-----------------------------------S---------------------------------
-------S---------------------S--------------------------------------------------
------S-------S-------------------------------------------S-----------SS--------
-----S--SS-------------------------------S---------------S----------------------
----------------------------------------------------------S---------------------
-------------------------------------------------------------S--------------S---
---------S----------------------------------------------S-----------------S-----
--------------------------------------S-------S-----S---S-----SS----S---SS-S----
---------------S------------------S--S---S-SS---S-SSSS-S------------------------
----------------S---------S-SSSS-SSSSS--SSS-SSSSSS--S-SS---S-S--S-SSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S-----------------S---
----S-----------------------S-S------------S---S-----------S-----S--------------
--S---S----S-------S-----S-SSSS-------S-------------------S---------S-S---------
-------------------S-S------SS---------------------S--S------------SS-----------
-----------S-SS---S---SS---------S--SS----S------S---S---------------------S--SS
-------SS-----------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS
>forward_345
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-----GCACATCTGTTGGCTAGTGC-------------------------------------------------------
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>reverse_2168
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-------TCAACGAGGTCAACAGGCTC-----------------------------------------------------
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>forward_2079
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-----------------------------------------------------------TGCCCAAGTACCTGAACGAC-
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>reverse_3449
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--------TCCTTGTCCTTTCGAGTGCC----------------------------------------------------
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