Multiple sequence alignment - TraesCS3A01G233700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G233700 chr3A 100.000 5413 0 0 1 5413 436460857 436466269 0.000000e+00 9997.0
1 TraesCS3A01G233700 chr3A 94.924 394 20 0 3090 3483 743489441 743489048 7.700000e-173 617.0
2 TraesCS3A01G233700 chr3B 93.966 3497 119 37 394 3851 425392376 425388933 0.000000e+00 5204.0
3 TraesCS3A01G233700 chr3B 94.864 1285 45 11 3850 5124 425388868 425387595 0.000000e+00 1988.0
4 TraesCS3A01G233700 chr3B 96.678 301 10 0 3090 3390 455128942 455129242 8.090000e-138 501.0
5 TraesCS3A01G233700 chr3D 92.693 3011 134 43 287 3267 299603636 299600682 0.000000e+00 4263.0
6 TraesCS3A01G233700 chr3D 95.152 1217 49 4 3895 5107 299599914 299598704 0.000000e+00 1912.0
7 TraesCS3A01G233700 chr3D 94.301 579 28 3 3274 3850 299600500 299599925 0.000000e+00 881.0
8 TraesCS3A01G233700 chr3D 84.255 235 33 3 4 234 451880707 451880941 5.460000e-55 226.0
9 TraesCS3A01G233700 chr3D 95.238 84 4 0 5330 5413 299598371 299598288 3.400000e-27 134.0
10 TraesCS3A01G233700 chr1D 96.447 394 14 0 3090 3483 474450679 474450286 0.000000e+00 651.0
11 TraesCS3A01G233700 chr1D 81.918 365 30 21 4765 5124 265141550 265141217 5.340000e-70 276.0
12 TraesCS3A01G233700 chr1D 97.143 35 1 0 4865 4899 265141416 265141382 5.860000e-05 60.2
13 TraesCS3A01G233700 chr7D 96.193 394 15 0 3090 3483 426446258 426446651 0.000000e+00 645.0
14 TraesCS3A01G233700 chr7D 96.203 395 14 1 3090 3483 491875198 491874804 0.000000e+00 645.0
15 TraesCS3A01G233700 chr4D 96.193 394 15 0 3090 3483 25399746 25400139 0.000000e+00 645.0
16 TraesCS3A01G233700 chr4D 84.436 257 34 4 11 265 40555997 40555745 1.160000e-61 248.0
17 TraesCS3A01G233700 chr5D 94.344 389 22 0 3095 3483 385111801 385111413 1.000000e-166 597.0
18 TraesCS3A01G233700 chr5D 81.985 272 38 10 2 267 560223831 560224097 2.540000e-53 220.0
19 TraesCS3A01G233700 chr5D 82.979 235 35 3 35 267 364239942 364239711 1.980000e-49 207.0
20 TraesCS3A01G233700 chr4A 91.542 402 25 3 4170 4571 667775054 667775446 3.690000e-151 545.0
21 TraesCS3A01G233700 chr4A 88.439 173 10 6 4956 5124 667788543 667788709 3.310000e-47 200.0
22 TraesCS3A01G233700 chr4A 92.424 132 10 0 4563 4694 667787997 667788128 7.160000e-44 189.0
23 TraesCS3A01G233700 chr6A 96.190 315 12 0 3517 3831 222558702 222558388 2.890000e-142 516.0
24 TraesCS3A01G233700 chr6A 79.452 365 39 17 4765 5124 291917862 291918195 5.460000e-55 226.0
25 TraesCS3A01G233700 chr6A 97.143 35 1 0 4865 4899 291917996 291918030 5.860000e-05 60.2
26 TraesCS3A01G233700 chrUn 85.328 259 36 2 9 265 87230960 87230702 3.210000e-67 267.0
27 TraesCS3A01G233700 chr2B 85.385 260 34 4 9 266 708671915 708671658 3.210000e-67 267.0
28 TraesCS3A01G233700 chr4B 83.333 270 39 5 2 267 72949613 72949880 1.510000e-60 244.0
29 TraesCS3A01G233700 chr4B 80.874 183 30 4 84 265 664947836 664947658 7.310000e-29 139.0
30 TraesCS3A01G233700 chr7B 81.550 271 43 6 1 267 679890993 679890726 3.280000e-52 217.0
31 TraesCS3A01G233700 chr6B 80.935 278 36 8 4 266 652122505 652122780 2.560000e-48 204.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G233700 chr3A 436460857 436466269 5412 False 9997.0 9997 100.000 1 5413 1 chr3A.!!$F1 5412
1 TraesCS3A01G233700 chr3B 425387595 425392376 4781 True 3596.0 5204 94.415 394 5124 2 chr3B.!!$R1 4730
2 TraesCS3A01G233700 chr3D 299598288 299603636 5348 True 1797.5 4263 94.346 287 5413 4 chr3D.!!$R1 5126

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
886 908 0.035739 GAACCCTAAACCCACGCAGA 59.964 55.000 0.00 0.0 0.0 4.26 F
1363 1388 1.006102 GTGTCTGTCTGGGTCGTGG 60.006 63.158 0.00 0.0 0.0 4.94 F
1680 1724 1.202031 CCGCGTCATTTGCTTAAGTCC 60.202 52.381 4.92 0.0 0.0 3.85 F
2624 2682 1.134250 GGCATCCCCTTTCTCAGTCTC 60.134 57.143 0.00 0.0 0.0 3.36 F
2994 3052 1.269051 GCAAGTACCAACACCAACAGC 60.269 52.381 0.00 0.0 0.0 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2145 2203 0.188342 AAAGGGAGCAGAAAAGGCCA 59.812 50.0 5.01 0.0 0.00 5.36 R
2624 2682 0.793478 CCTGTAAGCTGTCGTCGTCG 60.793 60.0 0.00 0.0 38.55 5.12 R
3570 3807 0.405585 CTGGGAACACACAGGGGAAT 59.594 55.0 0.00 0.0 35.60 3.01 R
3922 4233 0.620030 TGCAGAAGCTCATTAGGCCA 59.380 50.0 5.01 0.0 42.74 5.36 R
4836 5153 0.458025 ACTAGGCAGAAACTACGCGC 60.458 55.0 5.73 0.0 0.00 6.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.675552 ATAAGGGCGTACAATGGTGC 58.324 50.000 0.00 0.00 0.00 5.01
20 21 0.616371 TAAGGGCGTACAATGGTGCT 59.384 50.000 0.00 0.00 0.00 4.40
21 22 0.616371 AAGGGCGTACAATGGTGCTA 59.384 50.000 0.00 0.00 0.00 3.49
22 23 0.837272 AGGGCGTACAATGGTGCTAT 59.163 50.000 0.00 0.00 0.00 2.97
23 24 1.202651 AGGGCGTACAATGGTGCTATC 60.203 52.381 0.00 0.00 0.00 2.08
24 25 1.202651 GGGCGTACAATGGTGCTATCT 60.203 52.381 0.00 0.00 0.00 1.98
25 26 2.561569 GGCGTACAATGGTGCTATCTT 58.438 47.619 0.00 0.00 0.00 2.40
26 27 3.493699 GGGCGTACAATGGTGCTATCTTA 60.494 47.826 0.00 0.00 0.00 2.10
27 28 3.741344 GGCGTACAATGGTGCTATCTTAG 59.259 47.826 0.00 0.00 0.00 2.18
28 29 4.500887 GGCGTACAATGGTGCTATCTTAGA 60.501 45.833 0.00 0.00 0.00 2.10
29 30 5.047847 GCGTACAATGGTGCTATCTTAGAA 58.952 41.667 0.00 0.00 0.00 2.10
30 31 5.175856 GCGTACAATGGTGCTATCTTAGAAG 59.824 44.000 0.00 0.00 0.00 2.85
31 32 6.273825 CGTACAATGGTGCTATCTTAGAAGT 58.726 40.000 0.00 0.00 0.00 3.01
32 33 6.199154 CGTACAATGGTGCTATCTTAGAAGTG 59.801 42.308 0.00 0.00 0.00 3.16
33 34 5.431765 ACAATGGTGCTATCTTAGAAGTGG 58.568 41.667 0.00 0.00 0.00 4.00
34 35 3.543680 TGGTGCTATCTTAGAAGTGGC 57.456 47.619 0.00 0.00 0.00 5.01
35 36 2.837591 TGGTGCTATCTTAGAAGTGGCA 59.162 45.455 0.00 0.00 0.00 4.92
36 37 3.198872 GGTGCTATCTTAGAAGTGGCAC 58.801 50.000 10.29 10.29 41.20 5.01
37 38 2.860735 GTGCTATCTTAGAAGTGGCACG 59.139 50.000 12.71 0.00 37.24 5.34
38 39 2.496070 TGCTATCTTAGAAGTGGCACGT 59.504 45.455 12.71 9.31 0.00 4.49
39 40 3.697542 TGCTATCTTAGAAGTGGCACGTA 59.302 43.478 12.71 2.62 0.00 3.57
40 41 4.202020 TGCTATCTTAGAAGTGGCACGTAG 60.202 45.833 12.71 3.70 0.00 3.51
41 42 3.802948 ATCTTAGAAGTGGCACGTAGG 57.197 47.619 12.71 6.27 0.00 3.18
42 43 2.799017 TCTTAGAAGTGGCACGTAGGA 58.201 47.619 12.71 8.48 0.00 2.94
43 44 3.362706 TCTTAGAAGTGGCACGTAGGAT 58.637 45.455 12.71 0.00 0.00 3.24
44 45 4.529897 TCTTAGAAGTGGCACGTAGGATA 58.470 43.478 12.71 0.00 0.00 2.59
45 46 4.951715 TCTTAGAAGTGGCACGTAGGATAA 59.048 41.667 12.71 6.02 0.00 1.75
46 47 3.521947 AGAAGTGGCACGTAGGATAAC 57.478 47.619 12.71 0.00 0.00 1.89
56 57 3.770263 CGTAGGATAACGTTGAGGTGA 57.230 47.619 11.99 0.00 38.07 4.02
57 58 4.100707 CGTAGGATAACGTTGAGGTGAA 57.899 45.455 11.99 0.00 38.07 3.18
58 59 4.103357 CGTAGGATAACGTTGAGGTGAAG 58.897 47.826 11.99 0.00 38.07 3.02
59 60 3.611766 AGGATAACGTTGAGGTGAAGG 57.388 47.619 11.99 0.00 0.00 3.46
60 61 3.170717 AGGATAACGTTGAGGTGAAGGA 58.829 45.455 11.99 0.00 0.00 3.36
61 62 3.195825 AGGATAACGTTGAGGTGAAGGAG 59.804 47.826 11.99 0.00 0.00 3.69
62 63 3.194968 GGATAACGTTGAGGTGAAGGAGA 59.805 47.826 11.99 0.00 0.00 3.71
63 64 4.322499 GGATAACGTTGAGGTGAAGGAGAA 60.322 45.833 11.99 0.00 0.00 2.87
64 65 3.553828 AACGTTGAGGTGAAGGAGAAA 57.446 42.857 0.00 0.00 0.00 2.52
65 66 3.113260 ACGTTGAGGTGAAGGAGAAAG 57.887 47.619 0.00 0.00 0.00 2.62
66 67 2.698797 ACGTTGAGGTGAAGGAGAAAGA 59.301 45.455 0.00 0.00 0.00 2.52
67 68 3.134081 ACGTTGAGGTGAAGGAGAAAGAA 59.866 43.478 0.00 0.00 0.00 2.52
68 69 4.127171 CGTTGAGGTGAAGGAGAAAGAAA 58.873 43.478 0.00 0.00 0.00 2.52
69 70 4.757149 CGTTGAGGTGAAGGAGAAAGAAAT 59.243 41.667 0.00 0.00 0.00 2.17
70 71 5.106908 CGTTGAGGTGAAGGAGAAAGAAATC 60.107 44.000 0.00 0.00 0.00 2.17
71 72 5.567037 TGAGGTGAAGGAGAAAGAAATCA 57.433 39.130 0.00 0.00 0.00 2.57
72 73 6.131972 TGAGGTGAAGGAGAAAGAAATCAT 57.868 37.500 0.00 0.00 0.00 2.45
73 74 7.257790 TGAGGTGAAGGAGAAAGAAATCATA 57.742 36.000 0.00 0.00 0.00 2.15
74 75 7.689299 TGAGGTGAAGGAGAAAGAAATCATAA 58.311 34.615 0.00 0.00 0.00 1.90
75 76 7.826252 TGAGGTGAAGGAGAAAGAAATCATAAG 59.174 37.037 0.00 0.00 0.00 1.73
76 77 7.922382 AGGTGAAGGAGAAAGAAATCATAAGA 58.078 34.615 0.00 0.00 0.00 2.10
77 78 8.386264 AGGTGAAGGAGAAAGAAATCATAAGAA 58.614 33.333 0.00 0.00 0.00 2.52
78 79 9.014297 GGTGAAGGAGAAAGAAATCATAAGAAA 57.986 33.333 0.00 0.00 0.00 2.52
125 126 6.804770 AGATAATCTCTTAGCACGATACGT 57.195 37.500 0.00 0.00 42.36 3.57
126 127 6.833839 AGATAATCTCTTAGCACGATACGTC 58.166 40.000 0.00 0.00 38.32 4.34
127 128 6.651643 AGATAATCTCTTAGCACGATACGTCT 59.348 38.462 0.00 0.00 38.32 4.18
128 129 4.735662 ATCTCTTAGCACGATACGTCTC 57.264 45.455 0.00 0.00 38.32 3.36
129 130 3.528532 TCTCTTAGCACGATACGTCTCA 58.471 45.455 0.00 0.00 38.32 3.27
130 131 3.309138 TCTCTTAGCACGATACGTCTCAC 59.691 47.826 0.00 0.00 38.32 3.51
131 132 2.353889 TCTTAGCACGATACGTCTCACC 59.646 50.000 0.00 0.00 38.32 4.02
132 133 1.741528 TAGCACGATACGTCTCACCA 58.258 50.000 0.00 0.00 38.32 4.17
133 134 1.103803 AGCACGATACGTCTCACCAT 58.896 50.000 0.00 0.00 38.32 3.55
134 135 1.200483 GCACGATACGTCTCACCATG 58.800 55.000 0.00 0.00 38.32 3.66
135 136 1.469251 GCACGATACGTCTCACCATGT 60.469 52.381 0.00 0.00 38.32 3.21
136 137 2.876091 CACGATACGTCTCACCATGTT 58.124 47.619 0.00 0.00 38.32 2.71
137 138 3.250744 CACGATACGTCTCACCATGTTT 58.749 45.455 0.00 0.00 38.32 2.83
138 139 3.678072 CACGATACGTCTCACCATGTTTT 59.322 43.478 0.00 0.00 38.32 2.43
139 140 4.151689 CACGATACGTCTCACCATGTTTTT 59.848 41.667 0.00 0.00 38.32 1.94
140 141 5.346551 CACGATACGTCTCACCATGTTTTTA 59.653 40.000 0.00 0.00 38.32 1.52
141 142 5.927689 ACGATACGTCTCACCATGTTTTTAA 59.072 36.000 0.00 0.00 33.69 1.52
142 143 6.424509 ACGATACGTCTCACCATGTTTTTAAA 59.575 34.615 0.00 0.00 33.69 1.52
143 144 7.041916 ACGATACGTCTCACCATGTTTTTAAAA 60.042 33.333 0.00 0.00 33.69 1.52
144 145 7.799447 CGATACGTCTCACCATGTTTTTAAAAA 59.201 33.333 9.31 9.31 0.00 1.94
145 146 9.620660 GATACGTCTCACCATGTTTTTAAAAAT 57.379 29.630 16.02 0.00 0.00 1.82
148 149 8.626526 ACGTCTCACCATGTTTTTAAAAATAGT 58.373 29.630 16.02 6.58 0.00 2.12
149 150 9.458374 CGTCTCACCATGTTTTTAAAAATAGTT 57.542 29.630 16.02 0.00 0.00 2.24
185 186 9.061435 AGATAAGGCTAAAAGATAACTCATTGC 57.939 33.333 0.00 0.00 0.00 3.56
186 187 8.752005 ATAAGGCTAAAAGATAACTCATTGCA 57.248 30.769 0.00 0.00 0.00 4.08
187 188 6.442513 AGGCTAAAAGATAACTCATTGCAC 57.557 37.500 0.00 0.00 0.00 4.57
188 189 5.945784 AGGCTAAAAGATAACTCATTGCACA 59.054 36.000 0.00 0.00 0.00 4.57
189 190 6.030228 GGCTAAAAGATAACTCATTGCACAC 58.970 40.000 0.00 0.00 0.00 3.82
190 191 6.349280 GGCTAAAAGATAACTCATTGCACACA 60.349 38.462 0.00 0.00 0.00 3.72
191 192 7.253422 GCTAAAAGATAACTCATTGCACACAT 58.747 34.615 0.00 0.00 0.00 3.21
192 193 8.397906 GCTAAAAGATAACTCATTGCACACATA 58.602 33.333 0.00 0.00 0.00 2.29
193 194 9.708222 CTAAAAGATAACTCATTGCACACATAC 57.292 33.333 0.00 0.00 0.00 2.39
194 195 7.928307 AAAGATAACTCATTGCACACATACT 57.072 32.000 0.00 0.00 0.00 2.12
195 196 7.928307 AAGATAACTCATTGCACACATACTT 57.072 32.000 0.00 0.00 0.00 2.24
196 197 7.928307 AGATAACTCATTGCACACATACTTT 57.072 32.000 0.00 0.00 0.00 2.66
197 198 8.340618 AGATAACTCATTGCACACATACTTTT 57.659 30.769 0.00 0.00 0.00 2.27
198 199 9.448438 AGATAACTCATTGCACACATACTTTTA 57.552 29.630 0.00 0.00 0.00 1.52
257 258 8.738645 AAGATTTATCTTATCAACCACTGGAC 57.261 34.615 0.71 0.00 44.80 4.02
258 259 7.861629 AGATTTATCTTATCAACCACTGGACA 58.138 34.615 0.71 0.00 31.97 4.02
259 260 8.497745 AGATTTATCTTATCAACCACTGGACAT 58.502 33.333 0.71 0.00 31.97 3.06
260 261 7.864108 TTTATCTTATCAACCACTGGACATG 57.136 36.000 0.71 0.00 0.00 3.21
261 262 4.908601 TCTTATCAACCACTGGACATGT 57.091 40.909 0.00 0.00 0.00 3.21
262 263 4.832248 TCTTATCAACCACTGGACATGTC 58.168 43.478 17.91 17.91 0.00 3.06
275 276 4.846779 GGACATGTCCTAAGTGCAAAAA 57.153 40.909 33.47 0.00 46.16 1.94
276 277 4.798574 GGACATGTCCTAAGTGCAAAAAG 58.201 43.478 33.47 0.00 46.16 2.27
277 278 4.278419 GGACATGTCCTAAGTGCAAAAAGT 59.722 41.667 33.47 0.00 46.16 2.66
278 279 5.186996 ACATGTCCTAAGTGCAAAAAGTG 57.813 39.130 0.00 0.00 0.00 3.16
279 280 4.644685 ACATGTCCTAAGTGCAAAAAGTGT 59.355 37.500 0.00 0.00 0.00 3.55
280 281 4.893424 TGTCCTAAGTGCAAAAAGTGTC 57.107 40.909 0.00 0.00 0.00 3.67
281 282 4.523083 TGTCCTAAGTGCAAAAAGTGTCT 58.477 39.130 0.00 0.00 0.00 3.41
282 283 5.676552 TGTCCTAAGTGCAAAAAGTGTCTA 58.323 37.500 0.00 0.00 0.00 2.59
283 284 5.526111 TGTCCTAAGTGCAAAAAGTGTCTAC 59.474 40.000 0.00 0.00 0.00 2.59
284 285 5.049612 GTCCTAAGTGCAAAAAGTGTCTACC 60.050 44.000 0.00 0.00 0.00 3.18
285 286 4.819630 CCTAAGTGCAAAAAGTGTCTACCA 59.180 41.667 0.00 0.00 0.00 3.25
286 287 5.473504 CCTAAGTGCAAAAAGTGTCTACCAT 59.526 40.000 0.00 0.00 0.00 3.55
287 288 5.852282 AAGTGCAAAAAGTGTCTACCATT 57.148 34.783 0.00 0.00 0.00 3.16
288 289 5.852282 AGTGCAAAAAGTGTCTACCATTT 57.148 34.783 0.00 0.00 0.00 2.32
289 290 6.220726 AGTGCAAAAAGTGTCTACCATTTT 57.779 33.333 0.00 0.00 34.77 1.82
290 291 6.273071 AGTGCAAAAAGTGTCTACCATTTTC 58.727 36.000 0.00 0.00 32.40 2.29
291 292 5.173131 GTGCAAAAAGTGTCTACCATTTTCG 59.827 40.000 0.00 0.00 32.40 3.46
292 293 5.066634 TGCAAAAAGTGTCTACCATTTTCGA 59.933 36.000 0.00 0.00 32.40 3.71
293 294 5.625311 GCAAAAAGTGTCTACCATTTTCGAG 59.375 40.000 0.00 0.00 32.40 4.04
294 295 5.358298 AAAAGTGTCTACCATTTTCGAGC 57.642 39.130 0.00 0.00 32.40 5.03
295 296 3.963428 AGTGTCTACCATTTTCGAGCT 57.037 42.857 0.00 0.00 0.00 4.09
296 297 3.589988 AGTGTCTACCATTTTCGAGCTG 58.410 45.455 0.00 0.00 0.00 4.24
297 298 3.006967 AGTGTCTACCATTTTCGAGCTGT 59.993 43.478 0.00 0.00 0.00 4.40
298 299 3.746492 GTGTCTACCATTTTCGAGCTGTT 59.254 43.478 0.00 0.00 0.00 3.16
299 300 4.927425 GTGTCTACCATTTTCGAGCTGTTA 59.073 41.667 0.00 0.00 0.00 2.41
304 305 5.767816 ACCATTTTCGAGCTGTTAACTTT 57.232 34.783 7.22 0.00 0.00 2.66
305 306 5.758924 ACCATTTTCGAGCTGTTAACTTTC 58.241 37.500 7.22 1.35 0.00 2.62
311 312 2.340577 CGAGCTGTTAACTTTCGTACGG 59.659 50.000 16.52 1.50 0.00 4.02
329 330 5.346551 CGTACGGAACACTATTTTCACATGA 59.653 40.000 7.57 0.00 0.00 3.07
363 364 4.683832 GGCTGTCATCGTAGACACTTTAT 58.316 43.478 8.27 0.00 43.18 1.40
369 370 9.435802 CTGTCATCGTAGACACTTTATACTAAC 57.564 37.037 8.27 0.00 43.18 2.34
385 386 9.918630 TTTATACTAACATATAAACCGAGGAGC 57.081 33.333 0.00 0.00 33.86 4.70
386 387 5.864418 ACTAACATATAAACCGAGGAGCA 57.136 39.130 0.00 0.00 0.00 4.26
387 388 6.229936 ACTAACATATAAACCGAGGAGCAA 57.770 37.500 0.00 0.00 0.00 3.91
388 389 6.646267 ACTAACATATAAACCGAGGAGCAAA 58.354 36.000 0.00 0.00 0.00 3.68
390 391 4.839121 ACATATAAACCGAGGAGCAAACA 58.161 39.130 0.00 0.00 0.00 2.83
391 392 5.250200 ACATATAAACCGAGGAGCAAACAA 58.750 37.500 0.00 0.00 0.00 2.83
392 393 5.354234 ACATATAAACCGAGGAGCAAACAAG 59.646 40.000 0.00 0.00 0.00 3.16
419 420 6.892658 TGCTTTACACATGAATGTTTACCT 57.107 33.333 0.00 0.00 39.39 3.08
423 424 6.656314 TTACACATGAATGTTTACCTAGCG 57.344 37.500 0.00 0.00 39.39 4.26
425 426 2.607635 ACATGAATGTTTACCTAGCGCG 59.392 45.455 0.00 0.00 37.90 6.86
426 427 1.647346 TGAATGTTTACCTAGCGCGG 58.353 50.000 8.83 0.00 0.00 6.46
577 580 1.742831 TCAAGGACAGCACAACACAAC 59.257 47.619 0.00 0.00 0.00 3.32
596 599 4.202010 ACAACACACGAAGGGAAAATGAAG 60.202 41.667 0.00 0.00 0.00 3.02
604 607 4.615912 CGAAGGGAAAATGAAGCACGAAAT 60.616 41.667 0.00 0.00 0.00 2.17
615 618 1.358725 GCACGAAATCAGCGCAGGTA 61.359 55.000 11.47 0.00 35.08 3.08
616 619 1.075542 CACGAAATCAGCGCAGGTAA 58.924 50.000 11.47 0.00 35.08 2.85
650 653 4.040461 ACTTATACCACTTGCTCGGCATAT 59.960 41.667 0.00 0.00 38.76 1.78
653 657 5.932619 ATACCACTTGCTCGGCATATATA 57.067 39.130 0.00 0.00 38.76 0.86
717 735 5.047188 CACTAACAAATTGACAAACCCACC 58.953 41.667 0.00 0.00 0.00 4.61
816 837 2.685380 CTTCACCGGCCTCCTCCT 60.685 66.667 0.00 0.00 0.00 3.69
862 884 2.652095 CCCACCCGCTACCTCGAAA 61.652 63.158 0.00 0.00 0.00 3.46
886 908 0.035739 GAACCCTAAACCCACGCAGA 59.964 55.000 0.00 0.00 0.00 4.26
1255 1280 1.751162 CTCTCCGTCCTTCGCTCCT 60.751 63.158 0.00 0.00 38.35 3.69
1259 1284 2.881352 CGTCCTTCGCTCCTTCGC 60.881 66.667 0.00 0.00 0.00 4.70
1347 1372 1.064166 AGCAATCCTGGGGAATCTGTG 60.064 52.381 0.00 0.00 34.34 3.66
1363 1388 1.006102 GTGTCTGTCTGGGTCGTGG 60.006 63.158 0.00 0.00 0.00 4.94
1422 1458 7.966246 TTCATTTTCTTTGGACAATGAATGG 57.034 32.000 13.04 7.07 45.61 3.16
1459 1495 4.126520 TGGAGCCTATTTTTGGGACTTT 57.873 40.909 0.00 0.00 0.00 2.66
1565 1606 1.956629 TTCGCTTGGGGGAGACGATC 61.957 60.000 0.00 0.00 35.84 3.69
1575 1616 4.202482 TGGGGGAGACGATCAAACTTTTAA 60.202 41.667 0.00 0.00 0.00 1.52
1577 1618 6.117488 GGGGGAGACGATCAAACTTTTAATA 58.883 40.000 0.00 0.00 0.00 0.98
1578 1619 6.037940 GGGGGAGACGATCAAACTTTTAATAC 59.962 42.308 0.00 0.00 0.00 1.89
1579 1620 6.822170 GGGGAGACGATCAAACTTTTAATACT 59.178 38.462 0.00 0.00 0.00 2.12
1580 1621 7.983484 GGGGAGACGATCAAACTTTTAATACTA 59.017 37.037 0.00 0.00 0.00 1.82
1581 1622 9.032420 GGGAGACGATCAAACTTTTAATACTAG 57.968 37.037 0.00 0.00 0.00 2.57
1582 1623 9.583765 GGAGACGATCAAACTTTTAATACTAGT 57.416 33.333 0.00 0.00 0.00 2.57
1584 1625 9.367444 AGACGATCAAACTTTTAATACTAGTGG 57.633 33.333 5.39 0.00 0.00 4.00
1624 1668 3.994392 TGTCGCCTGTTACTCTTCAATTC 59.006 43.478 0.00 0.00 0.00 2.17
1625 1669 4.246458 GTCGCCTGTTACTCTTCAATTCT 58.754 43.478 0.00 0.00 0.00 2.40
1639 1683 9.924010 ACTCTTCAATTCTGTACTAGTATACCT 57.076 33.333 5.75 0.00 0.00 3.08
1680 1724 1.202031 CCGCGTCATTTGCTTAAGTCC 60.202 52.381 4.92 0.00 0.00 3.85
1700 1744 3.381272 TCCACAGCTTGAAACTTGAAAGG 59.619 43.478 0.00 0.00 0.00 3.11
1984 2035 2.260869 GCCTGCGCTTTTCCTGTCA 61.261 57.895 9.73 0.00 0.00 3.58
2056 2107 2.448705 GGCTCGACGAAAGCTGCTC 61.449 63.158 1.00 0.00 39.75 4.26
2146 2204 9.853555 TTGCTGTTTCTGTTTGGTATTTATATG 57.146 29.630 0.00 0.00 0.00 1.78
2147 2205 8.465999 TGCTGTTTCTGTTTGGTATTTATATGG 58.534 33.333 0.00 0.00 0.00 2.74
2152 2210 8.602472 TTCTGTTTGGTATTTATATGGCCTTT 57.398 30.769 3.32 0.00 0.00 3.11
2154 2212 8.691797 TCTGTTTGGTATTTATATGGCCTTTTC 58.308 33.333 3.32 0.00 0.00 2.29
2155 2213 8.602472 TGTTTGGTATTTATATGGCCTTTTCT 57.398 30.769 3.32 0.00 0.00 2.52
2156 2214 8.474025 TGTTTGGTATTTATATGGCCTTTTCTG 58.526 33.333 3.32 0.00 0.00 3.02
2157 2215 6.648879 TGGTATTTATATGGCCTTTTCTGC 57.351 37.500 3.32 0.00 0.00 4.26
2158 2216 6.372931 TGGTATTTATATGGCCTTTTCTGCT 58.627 36.000 3.32 0.00 0.00 4.24
2159 2217 6.490040 TGGTATTTATATGGCCTTTTCTGCTC 59.510 38.462 3.32 0.00 0.00 4.26
2341 2399 5.052481 TGCTGATAGTGATAGCATGTTCAC 58.948 41.667 14.11 14.11 42.05 3.18
2397 2455 4.877823 TGTCTGATCCATCAAGTTGCATAC 59.122 41.667 0.00 0.00 36.18 2.39
2540 2598 5.923684 GCATAGGAGCTTTAGTCATCAGTAC 59.076 44.000 0.00 0.00 0.00 2.73
2624 2682 1.134250 GGCATCCCCTTTCTCAGTCTC 60.134 57.143 0.00 0.00 0.00 3.36
2653 2711 2.061773 CAGCTTACAGGTGTGTTCGAG 58.938 52.381 0.00 0.00 38.80 4.04
2672 2730 3.553922 CGAGACCTATGGGCTTTGATCTC 60.554 52.174 0.00 0.00 35.63 2.75
2867 2925 2.035832 AGACAAGAATTTGCCAAACCCG 59.964 45.455 0.00 0.00 37.85 5.28
2911 2969 8.762645 GGTGATCCATCTTACCATCTATTCATA 58.237 37.037 0.00 0.00 33.42 2.15
2941 2999 5.297029 GGTCATAATCTGTTCTTAGGGTTGC 59.703 44.000 0.00 0.00 0.00 4.17
2952 3010 4.523083 TCTTAGGGTTGCATTATGTCACC 58.477 43.478 6.44 6.44 0.00 4.02
2953 3011 4.227300 TCTTAGGGTTGCATTATGTCACCT 59.773 41.667 12.49 9.02 0.00 4.00
2954 3012 5.427157 TCTTAGGGTTGCATTATGTCACCTA 59.573 40.000 12.49 8.26 0.00 3.08
2994 3052 1.269051 GCAAGTACCAACACCAACAGC 60.269 52.381 0.00 0.00 0.00 4.40
3002 3060 2.627699 CCAACACCAACAGCATTTACCT 59.372 45.455 0.00 0.00 0.00 3.08
3016 3074 4.479619 CATTTACCTCAAAGTTGCAGAGC 58.520 43.478 0.00 0.00 0.00 4.09
3229 3289 5.991328 TTCTGTGTCATTGAGAGTTTGTC 57.009 39.130 0.00 0.00 0.00 3.18
3365 3601 7.601508 GGTTGATCTTCTGATTTCATTTTGCTT 59.398 33.333 0.00 0.00 32.19 3.91
3484 3720 6.491383 TCTAGGAAGGTACAGTATTGTGACT 58.509 40.000 0.34 0.00 38.23 3.41
3592 3829 1.536676 CCCTGTGTGTTCCCAGGTT 59.463 57.895 5.09 0.00 45.61 3.50
3852 4155 5.070001 TCTACCATGAAAGTCAAACCCTTG 58.930 41.667 0.00 0.00 0.00 3.61
3920 4231 8.815565 TTCTGCCCACATTTAACTATTAATGA 57.184 30.769 0.00 0.00 0.00 2.57
3921 4232 8.220755 TCTGCCCACATTTAACTATTAATGAC 57.779 34.615 0.00 0.00 0.00 3.06
3922 4233 8.052748 TCTGCCCACATTTAACTATTAATGACT 58.947 33.333 0.00 0.00 0.00 3.41
3937 4248 2.698855 TGACTGGCCTAATGAGCTTC 57.301 50.000 3.32 0.00 0.00 3.86
4133 4444 3.076621 TCAGCACAAACTATGGCTTCAG 58.923 45.455 0.00 0.00 34.56 3.02
4195 4509 0.250038 TCTTGTGCAGTCAGAGTGGC 60.250 55.000 7.39 0.65 0.00 5.01
4210 4524 5.059833 CAGAGTGGCCTATATTTCTTCCAC 58.940 45.833 3.32 0.00 43.03 4.02
4240 4554 9.976511 ATATGACATAAATTCTGGCTTGATTTG 57.023 29.630 0.00 0.00 0.00 2.32
4241 4555 6.101332 TGACATAAATTCTGGCTTGATTTGC 58.899 36.000 0.00 0.00 0.00 3.68
4505 4819 0.583438 CTGTTGCGAGTTGGTGTGAG 59.417 55.000 0.00 0.00 0.00 3.51
4601 4916 8.877864 TTTTGGTCATATGTATTTCTGTTCCT 57.122 30.769 1.90 0.00 0.00 3.36
4615 4930 6.564709 TTCTGTTCCTGATCTGTTCAATTG 57.435 37.500 0.00 0.00 32.78 2.32
4643 4958 1.312815 GAATCTGTACAGCCCATGCC 58.687 55.000 18.45 0.00 38.69 4.40
4672 4988 0.902531 CCAGTTCACGTCTACCCCAT 59.097 55.000 0.00 0.00 0.00 4.00
4783 5099 3.059597 CGCTCAAGTTCGAACTCAATTGT 60.060 43.478 29.82 11.56 38.57 2.71
4808 5124 6.995686 TGTTTAGAAGCCTTCTCAATTGTGTA 59.004 34.615 10.91 0.00 41.14 2.90
4914 5231 0.780637 TGATGGTTGCAAAGGGGGTA 59.219 50.000 0.00 0.00 0.00 3.69
4987 5304 5.361857 AGATTCTGGATGGTTTTATTGGCTG 59.638 40.000 0.00 0.00 0.00 4.85
5024 5341 4.321156 GCTTCACATGCCAACATTACTTGA 60.321 41.667 0.00 0.00 32.87 3.02
5124 5448 6.203530 TGTTGCAACAGAAATTACTCTCTGAG 59.796 38.462 27.96 0.00 41.38 3.35
5126 5450 4.094146 GCAACAGAAATTACTCTCTGAGGC 59.906 45.833 11.03 9.63 41.38 4.70
5127 5451 5.486526 CAACAGAAATTACTCTCTGAGGCT 58.513 41.667 11.03 0.00 41.38 4.58
5128 5452 5.753721 ACAGAAATTACTCTCTGAGGCTT 57.246 39.130 11.03 0.00 41.38 4.35
5129 5453 6.120507 ACAGAAATTACTCTCTGAGGCTTT 57.879 37.500 11.03 0.00 41.38 3.51
5130 5454 7.246171 ACAGAAATTACTCTCTGAGGCTTTA 57.754 36.000 11.03 0.00 41.38 1.85
5131 5455 7.100409 ACAGAAATTACTCTCTGAGGCTTTAC 58.900 38.462 11.03 0.00 41.38 2.01
5132 5456 7.099764 CAGAAATTACTCTCTGAGGCTTTACA 58.900 38.462 4.59 0.00 41.38 2.41
5133 5457 7.064016 CAGAAATTACTCTCTGAGGCTTTACAC 59.936 40.741 4.59 0.00 41.38 2.90
5134 5458 4.803098 TTACTCTCTGAGGCTTTACACC 57.197 45.455 4.59 0.00 33.35 4.16
5136 5460 3.177228 ACTCTCTGAGGCTTTACACCAT 58.823 45.455 4.59 0.00 33.35 3.55
5138 5462 4.965532 ACTCTCTGAGGCTTTACACCATAT 59.034 41.667 4.59 0.00 33.35 1.78
5139 5463 6.136857 ACTCTCTGAGGCTTTACACCATATA 58.863 40.000 4.59 0.00 33.35 0.86
5141 5465 7.291182 ACTCTCTGAGGCTTTACACCATATATT 59.709 37.037 4.59 0.00 33.35 1.28
5143 5467 9.154632 TCTCTGAGGCTTTACACCATATATTTA 57.845 33.333 4.59 0.00 0.00 1.40
5144 5468 9.429359 CTCTGAGGCTTTACACCATATATTTAG 57.571 37.037 0.00 0.00 0.00 1.85
5145 5469 8.934697 TCTGAGGCTTTACACCATATATTTAGT 58.065 33.333 0.00 0.00 0.00 2.24
5146 5470 8.902540 TGAGGCTTTACACCATATATTTAGTG 57.097 34.615 0.00 5.98 36.30 2.74
5173 5689 0.893270 ATTTGCACACCGCTGCCTTA 60.893 50.000 0.00 0.00 43.06 2.69
5188 5704 6.589907 CCGCTGCCTTAGAACAAAAATAAAAT 59.410 34.615 0.00 0.00 0.00 1.82
5189 5705 7.757624 CCGCTGCCTTAGAACAAAAATAAAATA 59.242 33.333 0.00 0.00 0.00 1.40
5218 5734 5.877012 TCAACAATTCTCATACAGCTCCTTC 59.123 40.000 0.00 0.00 0.00 3.46
5220 5736 5.426504 ACAATTCTCATACAGCTCCTTCTG 58.573 41.667 0.00 0.00 39.86 3.02
5221 5737 4.686191 ATTCTCATACAGCTCCTTCTGG 57.314 45.455 0.00 0.00 38.36 3.86
5222 5738 1.759445 TCTCATACAGCTCCTTCTGGC 59.241 52.381 0.00 0.00 38.36 4.85
5223 5739 0.461548 TCATACAGCTCCTTCTGGCG 59.538 55.000 0.00 0.00 38.36 5.69
5224 5740 0.176680 CATACAGCTCCTTCTGGCGT 59.823 55.000 0.00 0.00 38.36 5.68
5225 5741 0.176680 ATACAGCTCCTTCTGGCGTG 59.823 55.000 0.00 0.00 38.36 5.34
5226 5742 2.507110 TACAGCTCCTTCTGGCGTGC 62.507 60.000 0.00 0.00 38.36 5.34
5227 5743 3.317571 AGCTCCTTCTGGCGTGCT 61.318 61.111 0.00 0.00 32.48 4.40
5228 5744 1.984570 AGCTCCTTCTGGCGTGCTA 60.985 57.895 0.00 0.00 34.37 3.49
5229 5745 1.144936 GCTCCTTCTGGCGTGCTAT 59.855 57.895 0.00 0.00 0.00 2.97
5230 5746 0.462759 GCTCCTTCTGGCGTGCTATT 60.463 55.000 0.00 0.00 0.00 1.73
5242 5758 0.097674 GTGCTATTTGCTGGCAGTCG 59.902 55.000 17.16 0.00 42.62 4.18
5244 5760 0.804989 GCTATTTGCTGGCAGTCGTT 59.195 50.000 17.16 2.02 38.95 3.85
5245 5761 1.202076 GCTATTTGCTGGCAGTCGTTC 60.202 52.381 17.16 0.00 38.95 3.95
5246 5762 1.398390 CTATTTGCTGGCAGTCGTTCC 59.602 52.381 17.16 0.00 0.00 3.62
5249 5765 1.476845 TTGCTGGCAGTCGTTCCCTA 61.477 55.000 17.16 0.00 0.00 3.53
5250 5766 1.264749 TGCTGGCAGTCGTTCCCTAT 61.265 55.000 17.16 0.00 0.00 2.57
5251 5767 0.530870 GCTGGCAGTCGTTCCCTATC 60.531 60.000 17.16 0.00 0.00 2.08
5252 5768 0.105039 CTGGCAGTCGTTCCCTATCC 59.895 60.000 6.28 0.00 0.00 2.59
5253 5769 1.335132 TGGCAGTCGTTCCCTATCCC 61.335 60.000 0.00 0.00 0.00 3.85
5254 5770 1.335132 GGCAGTCGTTCCCTATCCCA 61.335 60.000 0.00 0.00 0.00 4.37
5255 5771 0.105039 GCAGTCGTTCCCTATCCCAG 59.895 60.000 0.00 0.00 0.00 4.45
5256 5772 1.776662 CAGTCGTTCCCTATCCCAGA 58.223 55.000 0.00 0.00 0.00 3.86
5257 5773 2.320781 CAGTCGTTCCCTATCCCAGAT 58.679 52.381 0.00 0.00 0.00 2.90
5258 5774 3.497332 CAGTCGTTCCCTATCCCAGATA 58.503 50.000 0.00 0.00 0.00 1.98
5259 5775 3.256136 CAGTCGTTCCCTATCCCAGATAC 59.744 52.174 0.00 0.00 0.00 2.24
5260 5776 3.117246 AGTCGTTCCCTATCCCAGATACA 60.117 47.826 0.00 0.00 0.00 2.29
5261 5777 3.833070 GTCGTTCCCTATCCCAGATACAT 59.167 47.826 0.00 0.00 0.00 2.29
5262 5778 3.832490 TCGTTCCCTATCCCAGATACATG 59.168 47.826 0.00 0.00 0.00 3.21
5263 5779 3.832490 CGTTCCCTATCCCAGATACATGA 59.168 47.826 0.00 0.00 0.00 3.07
5264 5780 4.283467 CGTTCCCTATCCCAGATACATGAA 59.717 45.833 0.00 0.00 0.00 2.57
5265 5781 5.221641 CGTTCCCTATCCCAGATACATGAAA 60.222 44.000 0.00 0.00 0.00 2.69
5266 5782 6.234177 GTTCCCTATCCCAGATACATGAAAG 58.766 44.000 0.00 0.00 0.00 2.62
5267 5783 5.476983 TCCCTATCCCAGATACATGAAAGT 58.523 41.667 0.00 0.00 0.00 2.66
5268 5784 5.911178 TCCCTATCCCAGATACATGAAAGTT 59.089 40.000 0.00 0.00 0.00 2.66
5269 5785 6.043243 TCCCTATCCCAGATACATGAAAGTTC 59.957 42.308 0.00 0.00 0.00 3.01
5270 5786 6.183361 CCCTATCCCAGATACATGAAAGTTCA 60.183 42.308 0.00 0.00 42.14 3.18
5271 5787 6.933521 CCTATCCCAGATACATGAAAGTTCAG 59.066 42.308 0.00 0.00 41.08 3.02
5272 5788 6.566079 ATCCCAGATACATGAAAGTTCAGA 57.434 37.500 0.00 0.00 41.08 3.27
5273 5789 5.982356 TCCCAGATACATGAAAGTTCAGAG 58.018 41.667 0.00 0.00 41.08 3.35
5274 5790 5.104776 TCCCAGATACATGAAAGTTCAGAGG 60.105 44.000 0.00 0.00 41.08 3.69
5275 5791 4.574013 CCAGATACATGAAAGTTCAGAGGC 59.426 45.833 0.00 0.00 41.08 4.70
5276 5792 5.426504 CAGATACATGAAAGTTCAGAGGCT 58.573 41.667 0.00 0.00 41.08 4.58
5277 5793 6.407412 CCAGATACATGAAAGTTCAGAGGCTA 60.407 42.308 0.00 0.00 41.08 3.93
5278 5794 7.215789 CAGATACATGAAAGTTCAGAGGCTAT 58.784 38.462 0.00 0.00 41.08 2.97
5279 5795 7.384660 CAGATACATGAAAGTTCAGAGGCTATC 59.615 40.741 0.00 0.00 41.08 2.08
5280 5796 5.690464 ACATGAAAGTTCAGAGGCTATCT 57.310 39.130 0.00 0.00 41.08 1.98
5281 5797 6.798427 ACATGAAAGTTCAGAGGCTATCTA 57.202 37.500 0.00 0.00 41.08 1.98
5282 5798 7.372260 ACATGAAAGTTCAGAGGCTATCTAT 57.628 36.000 0.00 0.00 41.08 1.98
5283 5799 7.441017 ACATGAAAGTTCAGAGGCTATCTATC 58.559 38.462 0.00 0.00 41.08 2.08
5284 5800 6.412362 TGAAAGTTCAGAGGCTATCTATCC 57.588 41.667 0.00 0.00 36.10 2.59
5285 5801 5.010112 TGAAAGTTCAGAGGCTATCTATCCG 59.990 44.000 0.00 0.00 36.10 4.18
5286 5802 4.374689 AGTTCAGAGGCTATCTATCCGA 57.625 45.455 0.00 0.00 36.10 4.55
5287 5803 4.730966 AGTTCAGAGGCTATCTATCCGAA 58.269 43.478 0.00 0.00 36.10 4.30
5288 5804 5.141182 AGTTCAGAGGCTATCTATCCGAAA 58.859 41.667 0.00 0.00 36.10 3.46
5289 5805 5.777732 AGTTCAGAGGCTATCTATCCGAAAT 59.222 40.000 0.00 0.00 36.10 2.17
5290 5806 6.268847 AGTTCAGAGGCTATCTATCCGAAATT 59.731 38.462 0.00 0.00 36.10 1.82
5291 5807 7.451877 AGTTCAGAGGCTATCTATCCGAAATTA 59.548 37.037 0.00 0.00 36.10 1.40
5292 5808 7.962995 TCAGAGGCTATCTATCCGAAATTAT 57.037 36.000 0.00 0.00 36.10 1.28
5293 5809 7.776107 TCAGAGGCTATCTATCCGAAATTATG 58.224 38.462 0.00 0.00 36.10 1.90
5294 5810 7.615757 TCAGAGGCTATCTATCCGAAATTATGA 59.384 37.037 0.00 0.00 36.10 2.15
5295 5811 8.253810 CAGAGGCTATCTATCCGAAATTATGAA 58.746 37.037 0.00 0.00 36.10 2.57
5296 5812 8.986991 AGAGGCTATCTATCCGAAATTATGAAT 58.013 33.333 0.00 0.00 36.10 2.57
5324 5840 9.696572 TGTATATAGGAGTACAAGTTTCAGACT 57.303 33.333 0.00 0.00 41.47 3.24
5345 5861 0.900182 ATCAGACGGCAGACACCAGA 60.900 55.000 0.00 0.00 0.00 3.86
5376 5892 3.668447 ACCAGCAATACAGTCTCTGTTG 58.332 45.455 7.70 3.01 42.59 3.33
5395 5911 5.001232 TGTTGTATAGGAAGCACTGAAACC 58.999 41.667 0.00 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.211949 AGCACCATTGTACGCCCTTAT 59.788 47.619 0.00 0.00 0.00 1.73
2 3 0.616371 TAGCACCATTGTACGCCCTT 59.384 50.000 0.00 0.00 0.00 3.95
3 4 0.837272 ATAGCACCATTGTACGCCCT 59.163 50.000 0.00 0.00 0.00 5.19
4 5 1.202651 AGATAGCACCATTGTACGCCC 60.203 52.381 0.00 0.00 0.00 6.13
5 6 2.240493 AGATAGCACCATTGTACGCC 57.760 50.000 0.00 0.00 0.00 5.68
8 9 6.480320 CCACTTCTAAGATAGCACCATTGTAC 59.520 42.308 0.00 0.00 0.00 2.90
9 10 6.582636 CCACTTCTAAGATAGCACCATTGTA 58.417 40.000 0.00 0.00 0.00 2.41
10 11 5.431765 CCACTTCTAAGATAGCACCATTGT 58.568 41.667 0.00 0.00 0.00 2.71
11 12 4.274459 GCCACTTCTAAGATAGCACCATTG 59.726 45.833 0.00 0.00 0.00 2.82
12 13 4.080356 TGCCACTTCTAAGATAGCACCATT 60.080 41.667 0.00 0.00 0.00 3.16
13 14 3.455910 TGCCACTTCTAAGATAGCACCAT 59.544 43.478 0.00 0.00 0.00 3.55
14 15 2.837591 TGCCACTTCTAAGATAGCACCA 59.162 45.455 0.00 0.00 0.00 4.17
15 16 3.198872 GTGCCACTTCTAAGATAGCACC 58.801 50.000 17.62 7.26 40.45 5.01
16 17 2.860735 CGTGCCACTTCTAAGATAGCAC 59.139 50.000 18.07 18.07 41.60 4.40
17 18 2.496070 ACGTGCCACTTCTAAGATAGCA 59.504 45.455 0.00 0.05 0.00 3.49
18 19 3.166489 ACGTGCCACTTCTAAGATAGC 57.834 47.619 0.00 0.00 0.00 2.97
19 20 4.579340 TCCTACGTGCCACTTCTAAGATAG 59.421 45.833 0.00 0.00 0.00 2.08
20 21 4.529897 TCCTACGTGCCACTTCTAAGATA 58.470 43.478 0.00 0.00 0.00 1.98
21 22 3.362706 TCCTACGTGCCACTTCTAAGAT 58.637 45.455 0.00 0.00 0.00 2.40
22 23 2.799017 TCCTACGTGCCACTTCTAAGA 58.201 47.619 0.00 0.00 0.00 2.10
23 24 3.802948 ATCCTACGTGCCACTTCTAAG 57.197 47.619 0.00 0.00 0.00 2.18
24 25 4.439153 CGTTATCCTACGTGCCACTTCTAA 60.439 45.833 0.00 0.00 36.80 2.10
25 26 3.065786 CGTTATCCTACGTGCCACTTCTA 59.934 47.826 0.00 0.00 36.80 2.10
26 27 2.159282 CGTTATCCTACGTGCCACTTCT 60.159 50.000 0.00 0.00 36.80 2.85
27 28 2.190981 CGTTATCCTACGTGCCACTTC 58.809 52.381 0.00 0.00 36.80 3.01
28 29 2.288961 CGTTATCCTACGTGCCACTT 57.711 50.000 0.00 0.00 36.80 3.16
36 37 3.770263 TCACCTCAACGTTATCCTACG 57.230 47.619 0.00 0.00 46.52 3.51
37 38 4.159135 TCCTTCACCTCAACGTTATCCTAC 59.841 45.833 0.00 0.00 0.00 3.18
38 39 4.346730 TCCTTCACCTCAACGTTATCCTA 58.653 43.478 0.00 0.00 0.00 2.94
39 40 3.170717 TCCTTCACCTCAACGTTATCCT 58.829 45.455 0.00 0.00 0.00 3.24
40 41 3.194968 TCTCCTTCACCTCAACGTTATCC 59.805 47.826 0.00 0.00 0.00 2.59
41 42 4.451629 TCTCCTTCACCTCAACGTTATC 57.548 45.455 0.00 0.00 0.00 1.75
42 43 4.884668 TTCTCCTTCACCTCAACGTTAT 57.115 40.909 0.00 0.00 0.00 1.89
43 44 4.342951 TCTTTCTCCTTCACCTCAACGTTA 59.657 41.667 0.00 0.00 0.00 3.18
44 45 3.134081 TCTTTCTCCTTCACCTCAACGTT 59.866 43.478 0.00 0.00 0.00 3.99
45 46 2.698797 TCTTTCTCCTTCACCTCAACGT 59.301 45.455 0.00 0.00 0.00 3.99
46 47 3.386768 TCTTTCTCCTTCACCTCAACG 57.613 47.619 0.00 0.00 0.00 4.10
47 48 5.765182 TGATTTCTTTCTCCTTCACCTCAAC 59.235 40.000 0.00 0.00 0.00 3.18
48 49 5.940617 TGATTTCTTTCTCCTTCACCTCAA 58.059 37.500 0.00 0.00 0.00 3.02
49 50 5.567037 TGATTTCTTTCTCCTTCACCTCA 57.433 39.130 0.00 0.00 0.00 3.86
50 51 8.043710 TCTTATGATTTCTTTCTCCTTCACCTC 58.956 37.037 0.00 0.00 0.00 3.85
51 52 7.922382 TCTTATGATTTCTTTCTCCTTCACCT 58.078 34.615 0.00 0.00 0.00 4.00
52 53 8.567285 TTCTTATGATTTCTTTCTCCTTCACC 57.433 34.615 0.00 0.00 0.00 4.02
100 101 6.651643 ACGTATCGTGCTAAGAGATTATCTCT 59.348 38.462 18.14 18.14 46.79 3.10
101 102 6.833839 ACGTATCGTGCTAAGAGATTATCTC 58.166 40.000 13.92 13.92 40.31 2.75
102 103 6.651643 AGACGTATCGTGCTAAGAGATTATCT 59.348 38.462 0.00 0.00 41.37 1.98
103 104 6.833839 AGACGTATCGTGCTAAGAGATTATC 58.166 40.000 0.00 0.00 41.37 1.75
104 105 6.427242 TGAGACGTATCGTGCTAAGAGATTAT 59.573 38.462 5.61 0.00 41.37 1.28
105 106 5.756833 TGAGACGTATCGTGCTAAGAGATTA 59.243 40.000 5.61 0.00 41.37 1.75
106 107 4.575236 TGAGACGTATCGTGCTAAGAGATT 59.425 41.667 5.61 0.00 41.37 2.40
107 108 4.024725 GTGAGACGTATCGTGCTAAGAGAT 60.025 45.833 5.61 0.00 41.37 2.75
108 109 3.309138 GTGAGACGTATCGTGCTAAGAGA 59.691 47.826 5.61 0.00 41.37 3.10
109 110 3.546417 GGTGAGACGTATCGTGCTAAGAG 60.546 52.174 5.61 0.00 41.37 2.85
110 111 2.353889 GGTGAGACGTATCGTGCTAAGA 59.646 50.000 5.61 0.00 41.37 2.10
111 112 2.096980 TGGTGAGACGTATCGTGCTAAG 59.903 50.000 5.61 0.00 41.37 2.18
112 113 2.086094 TGGTGAGACGTATCGTGCTAA 58.914 47.619 5.61 0.00 41.37 3.09
113 114 1.741528 TGGTGAGACGTATCGTGCTA 58.258 50.000 5.61 0.00 41.37 3.49
114 115 1.103803 ATGGTGAGACGTATCGTGCT 58.896 50.000 5.61 0.00 41.37 4.40
115 116 1.200483 CATGGTGAGACGTATCGTGC 58.800 55.000 5.61 0.00 41.37 5.34
116 117 2.561733 ACATGGTGAGACGTATCGTG 57.438 50.000 5.61 4.66 41.37 4.35
117 118 3.587797 AAACATGGTGAGACGTATCGT 57.412 42.857 5.61 0.00 45.10 3.73
118 119 4.921470 AAAAACATGGTGAGACGTATCG 57.079 40.909 5.61 0.00 0.00 2.92
119 120 9.620660 ATTTTTAAAAACATGGTGAGACGTATC 57.379 29.630 15.35 2.50 0.00 2.24
122 123 8.626526 ACTATTTTTAAAAACATGGTGAGACGT 58.373 29.630 15.35 0.00 0.00 4.34
123 124 9.458374 AACTATTTTTAAAAACATGGTGAGACG 57.542 29.630 15.35 0.00 0.00 4.18
159 160 9.061435 GCAATGAGTTATCTTTTAGCCTTATCT 57.939 33.333 0.00 0.00 0.00 1.98
160 161 8.840321 TGCAATGAGTTATCTTTTAGCCTTATC 58.160 33.333 0.00 0.00 0.00 1.75
161 162 8.624776 GTGCAATGAGTTATCTTTTAGCCTTAT 58.375 33.333 0.00 0.00 0.00 1.73
162 163 7.609918 TGTGCAATGAGTTATCTTTTAGCCTTA 59.390 33.333 0.00 0.00 0.00 2.69
163 164 6.434028 TGTGCAATGAGTTATCTTTTAGCCTT 59.566 34.615 0.00 0.00 0.00 4.35
164 165 5.945784 TGTGCAATGAGTTATCTTTTAGCCT 59.054 36.000 0.00 0.00 0.00 4.58
165 166 6.030228 GTGTGCAATGAGTTATCTTTTAGCC 58.970 40.000 0.00 0.00 0.00 3.93
166 167 6.611381 TGTGTGCAATGAGTTATCTTTTAGC 58.389 36.000 0.00 0.00 0.00 3.09
167 168 9.708222 GTATGTGTGCAATGAGTTATCTTTTAG 57.292 33.333 0.00 0.00 0.00 1.85
168 169 9.448438 AGTATGTGTGCAATGAGTTATCTTTTA 57.552 29.630 0.00 0.00 0.00 1.52
169 170 8.340618 AGTATGTGTGCAATGAGTTATCTTTT 57.659 30.769 0.00 0.00 0.00 2.27
170 171 7.928307 AGTATGTGTGCAATGAGTTATCTTT 57.072 32.000 0.00 0.00 0.00 2.52
171 172 7.928307 AAGTATGTGTGCAATGAGTTATCTT 57.072 32.000 0.00 0.00 0.00 2.40
172 173 7.928307 AAAGTATGTGTGCAATGAGTTATCT 57.072 32.000 0.00 0.00 0.00 1.98
233 234 7.861629 TGTCCAGTGGTTGATAAGATAAATCT 58.138 34.615 9.54 0.00 39.22 2.40
234 235 8.562892 CATGTCCAGTGGTTGATAAGATAAATC 58.437 37.037 9.54 0.00 0.00 2.17
235 236 8.055181 ACATGTCCAGTGGTTGATAAGATAAAT 58.945 33.333 9.54 0.00 0.00 1.40
236 237 7.402054 ACATGTCCAGTGGTTGATAAGATAAA 58.598 34.615 9.54 0.00 0.00 1.40
237 238 6.957631 ACATGTCCAGTGGTTGATAAGATAA 58.042 36.000 9.54 0.00 0.00 1.75
238 239 6.560003 ACATGTCCAGTGGTTGATAAGATA 57.440 37.500 9.54 0.00 0.00 1.98
239 240 5.431765 GACATGTCCAGTGGTTGATAAGAT 58.568 41.667 15.31 0.00 0.00 2.40
240 241 4.832248 GACATGTCCAGTGGTTGATAAGA 58.168 43.478 15.31 0.00 0.00 2.10
255 256 5.215160 CACTTTTTGCACTTAGGACATGTC 58.785 41.667 17.91 17.91 0.00 3.06
256 257 4.644685 ACACTTTTTGCACTTAGGACATGT 59.355 37.500 0.00 0.00 0.00 3.21
257 258 5.009010 AGACACTTTTTGCACTTAGGACATG 59.991 40.000 0.00 0.00 0.00 3.21
258 259 5.133221 AGACACTTTTTGCACTTAGGACAT 58.867 37.500 0.00 0.00 0.00 3.06
259 260 4.523083 AGACACTTTTTGCACTTAGGACA 58.477 39.130 0.00 0.00 0.00 4.02
260 261 5.049612 GGTAGACACTTTTTGCACTTAGGAC 60.050 44.000 0.00 0.00 0.00 3.85
261 262 5.061179 GGTAGACACTTTTTGCACTTAGGA 58.939 41.667 0.00 0.00 0.00 2.94
262 263 4.819630 TGGTAGACACTTTTTGCACTTAGG 59.180 41.667 0.00 0.00 0.00 2.69
263 264 6.560253 ATGGTAGACACTTTTTGCACTTAG 57.440 37.500 0.00 0.00 0.00 2.18
264 265 6.952773 AATGGTAGACACTTTTTGCACTTA 57.047 33.333 0.00 0.00 0.00 2.24
265 266 5.852282 AATGGTAGACACTTTTTGCACTT 57.148 34.783 0.00 0.00 0.00 3.16
266 267 5.852282 AAATGGTAGACACTTTTTGCACT 57.148 34.783 0.00 0.00 0.00 4.40
267 268 5.173131 CGAAAATGGTAGACACTTTTTGCAC 59.827 40.000 0.00 0.00 26.99 4.57
268 269 5.066634 TCGAAAATGGTAGACACTTTTTGCA 59.933 36.000 0.00 0.00 26.99 4.08
269 270 5.516090 TCGAAAATGGTAGACACTTTTTGC 58.484 37.500 0.00 0.00 26.99 3.68
270 271 5.625311 GCTCGAAAATGGTAGACACTTTTTG 59.375 40.000 0.00 0.00 26.99 2.44
271 272 5.531287 AGCTCGAAAATGGTAGACACTTTTT 59.469 36.000 0.00 0.00 26.99 1.94
272 273 5.049405 CAGCTCGAAAATGGTAGACACTTTT 60.049 40.000 0.00 0.00 26.99 2.27
273 274 4.452455 CAGCTCGAAAATGGTAGACACTTT 59.548 41.667 0.00 0.00 29.99 2.66
274 275 3.997021 CAGCTCGAAAATGGTAGACACTT 59.003 43.478 0.00 0.00 0.00 3.16
275 276 3.006967 ACAGCTCGAAAATGGTAGACACT 59.993 43.478 0.00 0.00 0.00 3.55
276 277 3.326747 ACAGCTCGAAAATGGTAGACAC 58.673 45.455 0.00 0.00 0.00 3.67
277 278 3.678056 ACAGCTCGAAAATGGTAGACA 57.322 42.857 0.00 0.00 0.00 3.41
278 279 5.638234 AGTTAACAGCTCGAAAATGGTAGAC 59.362 40.000 8.61 0.00 0.00 2.59
279 280 5.790593 AGTTAACAGCTCGAAAATGGTAGA 58.209 37.500 8.61 0.00 0.00 2.59
280 281 6.481954 AAGTTAACAGCTCGAAAATGGTAG 57.518 37.500 8.61 0.00 0.00 3.18
281 282 6.347079 CGAAAGTTAACAGCTCGAAAATGGTA 60.347 38.462 15.04 0.00 0.00 3.25
282 283 5.560183 CGAAAGTTAACAGCTCGAAAATGGT 60.560 40.000 15.04 0.00 0.00 3.55
283 284 4.846137 CGAAAGTTAACAGCTCGAAAATGG 59.154 41.667 15.04 0.00 0.00 3.16
284 285 5.440685 ACGAAAGTTAACAGCTCGAAAATG 58.559 37.500 22.71 0.00 46.40 2.32
285 286 5.668558 ACGAAAGTTAACAGCTCGAAAAT 57.331 34.783 22.71 5.48 46.40 1.82
286 287 5.331756 CGTACGAAAGTTAACAGCTCGAAAA 60.332 40.000 22.71 10.46 46.40 2.29
287 288 4.146961 CGTACGAAAGTTAACAGCTCGAAA 59.853 41.667 22.71 12.18 46.40 3.46
288 289 3.665409 CGTACGAAAGTTAACAGCTCGAA 59.335 43.478 22.71 0.00 46.40 3.71
289 290 3.228749 CGTACGAAAGTTAACAGCTCGA 58.771 45.455 22.71 9.79 46.40 4.04
290 291 2.340577 CCGTACGAAAGTTAACAGCTCG 59.659 50.000 18.76 17.30 46.40 5.03
291 292 3.568538 TCCGTACGAAAGTTAACAGCTC 58.431 45.455 18.76 0.23 46.40 4.09
292 293 3.648339 TCCGTACGAAAGTTAACAGCT 57.352 42.857 18.76 0.00 46.40 4.24
293 294 3.490526 TGTTCCGTACGAAAGTTAACAGC 59.509 43.478 18.76 0.00 46.40 4.40
294 295 4.741676 AGTGTTCCGTACGAAAGTTAACAG 59.258 41.667 18.76 0.00 46.40 3.16
295 296 4.681744 AGTGTTCCGTACGAAAGTTAACA 58.318 39.130 18.76 13.15 46.40 2.41
296 297 6.934561 ATAGTGTTCCGTACGAAAGTTAAC 57.065 37.500 18.76 10.89 46.40 2.01
297 298 7.945033 AAATAGTGTTCCGTACGAAAGTTAA 57.055 32.000 18.76 0.00 46.40 2.01
298 299 7.651304 TGAAAATAGTGTTCCGTACGAAAGTTA 59.349 33.333 18.76 2.49 46.40 2.24
299 300 6.479660 TGAAAATAGTGTTCCGTACGAAAGTT 59.520 34.615 18.76 0.10 46.40 2.66
304 305 4.869215 TGTGAAAATAGTGTTCCGTACGA 58.131 39.130 18.76 0.00 0.00 3.43
305 306 5.346551 TCATGTGAAAATAGTGTTCCGTACG 59.653 40.000 8.69 8.69 0.00 3.67
339 340 1.138883 TGTCTACGATGACAGCCGC 59.861 57.895 10.21 0.00 41.43 6.53
363 364 6.964807 TGCTCCTCGGTTTATATGTTAGTA 57.035 37.500 0.00 0.00 0.00 1.82
369 370 5.354234 ACTTGTTTGCTCCTCGGTTTATATG 59.646 40.000 0.00 0.00 0.00 1.78
378 379 1.135859 GCATGACTTGTTTGCTCCTCG 60.136 52.381 0.00 0.00 33.61 4.63
380 381 2.283145 AGCATGACTTGTTTGCTCCT 57.717 45.000 0.00 0.00 42.88 3.69
381 382 3.375782 AAAGCATGACTTGTTTGCTCC 57.624 42.857 0.00 0.00 45.54 4.70
382 383 4.676924 GTGTAAAGCATGACTTGTTTGCTC 59.323 41.667 0.00 2.97 45.54 4.26
384 385 4.358851 TGTGTAAAGCATGACTTGTTTGC 58.641 39.130 0.00 0.00 39.09 3.68
385 386 6.207928 TCATGTGTAAAGCATGACTTGTTTG 58.792 36.000 0.00 0.00 45.18 2.93
386 387 6.389830 TCATGTGTAAAGCATGACTTGTTT 57.610 33.333 0.00 0.00 45.18 2.83
419 420 0.956633 AGATAAATCGGTCCGCGCTA 59.043 50.000 6.34 0.00 0.00 4.26
423 424 1.935933 ACACAGATAAATCGGTCCGC 58.064 50.000 6.34 0.00 32.93 5.54
425 426 4.567159 GTGAGAACACAGATAAATCGGTCC 59.433 45.833 0.00 0.00 45.32 4.46
426 427 5.704217 GTGAGAACACAGATAAATCGGTC 57.296 43.478 0.00 0.00 45.32 4.79
480 481 3.257375 TGCAGCAAAGAAATTCAGATGCT 59.743 39.130 18.46 15.55 44.34 3.79
577 580 2.293122 TGCTTCATTTTCCCTTCGTGTG 59.707 45.455 0.00 0.00 0.00 3.82
596 599 1.358725 TACCTGCGCTGATTTCGTGC 61.359 55.000 16.65 0.00 38.32 5.34
635 638 4.623167 GTCAGTATATATGCCGAGCAAGTG 59.377 45.833 2.68 0.62 43.62 3.16
636 639 4.280929 TGTCAGTATATATGCCGAGCAAGT 59.719 41.667 2.68 0.00 43.62 3.16
637 640 4.809673 TGTCAGTATATATGCCGAGCAAG 58.190 43.478 2.68 0.00 43.62 4.01
650 653 6.293407 GCAGACTGCTTTTGTTTGTCAGTATA 60.293 38.462 20.41 0.00 40.96 1.47
653 657 3.428045 GCAGACTGCTTTTGTTTGTCAGT 60.428 43.478 20.41 0.00 40.96 3.41
812 833 1.681486 GGAGGAAGCGGAGGAAGGAG 61.681 65.000 0.00 0.00 0.00 3.69
816 837 1.078528 TGAGGAGGAAGCGGAGGAA 59.921 57.895 0.00 0.00 0.00 3.36
851 872 1.082679 GTTCGGGCTTTCGAGGTAGC 61.083 60.000 7.49 7.49 40.42 3.58
853 874 1.593265 GGTTCGGGCTTTCGAGGTA 59.407 57.895 0.00 0.00 40.42 3.08
857 878 0.686224 TTTAGGGTTCGGGCTTTCGA 59.314 50.000 0.00 0.00 37.38 3.71
862 884 1.848895 TGGGTTTAGGGTTCGGGCT 60.849 57.895 0.00 0.00 0.00 5.19
990 1015 2.123251 GCCCCCATCTCTCTCCGA 60.123 66.667 0.00 0.00 0.00 4.55
1255 1280 0.613260 AGCTTACAGGTGATGGCGAA 59.387 50.000 0.00 0.00 0.00 4.70
1259 1284 1.661341 GAGCAGCTTACAGGTGATGG 58.339 55.000 7.13 0.00 42.88 3.51
1347 1372 0.600255 CAACCACGACCCAGACAGAC 60.600 60.000 0.00 0.00 0.00 3.51
1363 1388 1.607801 GGGATGGGGAAGCAAGCAAC 61.608 60.000 0.00 0.00 0.00 4.17
1400 1431 7.156673 ACTCCATTCATTGTCCAAAGAAAATG 58.843 34.615 2.28 0.35 45.63 2.32
1401 1432 7.307131 ACTCCATTCATTGTCCAAAGAAAAT 57.693 32.000 2.28 0.00 32.72 1.82
1422 1458 2.031944 GCTCCAAGGACAAACGAAACTC 60.032 50.000 0.00 0.00 0.00 3.01
1579 1620 7.408543 ACACTTATACTTCCACTAGTCCACTA 58.591 38.462 0.00 0.00 0.00 2.74
1580 1621 6.254522 ACACTTATACTTCCACTAGTCCACT 58.745 40.000 0.00 0.00 0.00 4.00
1581 1622 6.527057 ACACTTATACTTCCACTAGTCCAC 57.473 41.667 0.00 0.00 0.00 4.02
1582 1623 5.356190 CGACACTTATACTTCCACTAGTCCA 59.644 44.000 0.00 0.00 0.00 4.02
1583 1624 5.732810 GCGACACTTATACTTCCACTAGTCC 60.733 48.000 0.00 0.00 0.00 3.85
1584 1625 5.272397 GCGACACTTATACTTCCACTAGTC 58.728 45.833 0.00 0.00 0.00 2.59
1651 1695 3.687698 AGCAAATGACGCGGTTTATAACT 59.312 39.130 12.47 0.00 0.00 2.24
1652 1696 4.011058 AGCAAATGACGCGGTTTATAAC 57.989 40.909 12.47 0.00 0.00 1.89
1653 1697 4.688511 AAGCAAATGACGCGGTTTATAA 57.311 36.364 12.47 0.00 0.00 0.98
1654 1698 5.352016 ACTTAAGCAAATGACGCGGTTTATA 59.648 36.000 12.47 1.01 0.00 0.98
1655 1699 4.155280 ACTTAAGCAAATGACGCGGTTTAT 59.845 37.500 12.47 0.00 0.00 1.40
1680 1724 3.118542 GCCTTTCAAGTTTCAAGCTGTG 58.881 45.455 0.00 0.00 0.00 3.66
1715 1759 3.774766 TGATGGCTGGTGTAGACTGTATT 59.225 43.478 0.00 0.00 34.56 1.89
1716 1760 3.374764 TGATGGCTGGTGTAGACTGTAT 58.625 45.455 0.00 0.00 34.56 2.29
1984 2035 2.744494 GCCGAGAGCAAAGATCAAGGAT 60.744 50.000 0.00 0.00 42.97 3.24
2056 2107 0.949397 CAGGGTCAATGCGATGGATG 59.051 55.000 0.00 0.00 0.00 3.51
2144 2202 0.411058 AAGGGAGCAGAAAAGGCCAT 59.589 50.000 5.01 0.00 0.00 4.40
2145 2203 0.188342 AAAGGGAGCAGAAAAGGCCA 59.812 50.000 5.01 0.00 0.00 5.36
2146 2204 1.273606 GAAAAGGGAGCAGAAAAGGCC 59.726 52.381 0.00 0.00 0.00 5.19
2147 2205 1.963515 TGAAAAGGGAGCAGAAAAGGC 59.036 47.619 0.00 0.00 0.00 4.35
2152 2210 4.330250 CAGAATCTGAAAAGGGAGCAGAA 58.670 43.478 3.77 0.00 41.48 3.02
2154 2212 3.015327 CCAGAATCTGAAAAGGGAGCAG 58.985 50.000 12.53 0.00 32.44 4.24
2155 2213 2.881403 GCCAGAATCTGAAAAGGGAGCA 60.881 50.000 12.53 0.00 32.44 4.26
2156 2214 1.747924 GCCAGAATCTGAAAAGGGAGC 59.252 52.381 12.53 0.00 32.44 4.70
2157 2215 3.362870 AGCCAGAATCTGAAAAGGGAG 57.637 47.619 12.53 0.00 32.44 4.30
2158 2216 3.814504 AAGCCAGAATCTGAAAAGGGA 57.185 42.857 12.53 0.00 32.44 4.20
2159 2217 4.335416 TGTAAGCCAGAATCTGAAAAGGG 58.665 43.478 12.53 0.00 32.44 3.95
2341 2399 1.751927 GTGATCCCCTGGCAAGCAG 60.752 63.158 0.00 0.00 0.00 4.24
2397 2455 2.503895 AACAATTCAGGAGCTGGAGG 57.496 50.000 0.00 0.00 31.51 4.30
2540 2598 4.497340 GGTGCATATAACGATGTTTGGTGG 60.497 45.833 0.00 0.00 0.00 4.61
2579 2637 1.374758 CACCGTTGGAGAGGTCAGC 60.375 63.158 0.00 0.00 39.00 4.26
2624 2682 0.793478 CCTGTAAGCTGTCGTCGTCG 60.793 60.000 0.00 0.00 38.55 5.12
2632 2690 1.411246 TCGAACACACCTGTAAGCTGT 59.589 47.619 0.00 0.00 0.00 4.40
2653 2711 2.365617 TCGAGATCAAAGCCCATAGGTC 59.634 50.000 0.00 0.00 34.57 3.85
2672 2730 4.504916 CCGTGCTCTCCAGCCTCG 62.505 72.222 0.00 0.00 46.26 4.63
2813 2871 2.159421 TCTGCGAGGTCGAGATGTTAAC 60.159 50.000 2.94 0.00 43.02 2.01
2867 2925 1.269998 ACCTGTGACTCAAGCTCGTAC 59.730 52.381 0.00 0.00 0.00 3.67
2928 2986 5.163652 GGTGACATAATGCAACCCTAAGAAC 60.164 44.000 0.00 0.00 0.00 3.01
2932 2990 4.584638 AGGTGACATAATGCAACCCTAA 57.415 40.909 0.00 0.00 29.16 2.69
2994 3052 4.022935 TGCTCTGCAACTTTGAGGTAAATG 60.023 41.667 2.49 0.00 34.76 2.32
3365 3601 1.915228 GAGCCCAAGCCCATGTCTA 59.085 57.895 0.00 0.00 41.25 2.59
3484 3720 6.016693 TGCTGATTTACAATGGACGAAGAAAA 60.017 34.615 0.00 0.00 0.00 2.29
3570 3807 0.405585 CTGGGAACACACAGGGGAAT 59.594 55.000 0.00 0.00 35.60 3.01
3592 3829 4.503714 AAGAACAACTCCCTTCACTTCA 57.496 40.909 0.00 0.00 0.00 3.02
3833 4070 5.982890 ATACAAGGGTTTGACTTTCATGG 57.017 39.130 0.00 0.00 37.73 3.66
3901 4212 7.285401 AGGCCAGTCATTAATAGTTAAATGTGG 59.715 37.037 5.01 0.00 0.00 4.17
3918 4229 2.093288 CAGAAGCTCATTAGGCCAGTCA 60.093 50.000 5.01 0.00 0.00 3.41
3919 4230 2.559440 CAGAAGCTCATTAGGCCAGTC 58.441 52.381 5.01 0.00 0.00 3.51
3920 4231 1.407989 GCAGAAGCTCATTAGGCCAGT 60.408 52.381 5.01 0.00 37.91 4.00
3921 4232 1.307097 GCAGAAGCTCATTAGGCCAG 58.693 55.000 5.01 0.00 37.91 4.85
3922 4233 0.620030 TGCAGAAGCTCATTAGGCCA 59.380 50.000 5.01 0.00 42.74 5.36
3937 4248 2.634815 ATAGTGGAGCCTGAATGCAG 57.365 50.000 0.00 0.00 41.93 4.41
4239 4553 8.681486 ACACAGATTTATTTAGATATGCAGCA 57.319 30.769 0.00 0.00 0.00 4.41
4240 4554 9.956720 AAACACAGATTTATTTAGATATGCAGC 57.043 29.630 0.00 0.00 0.00 5.25
4505 4819 3.506067 ACTACTTTGCAACTAACATGGGC 59.494 43.478 0.00 0.00 0.00 5.36
4601 4916 5.532032 TCAACTTGCTCAATTGAACAGATCA 59.468 36.000 9.88 0.00 35.85 2.92
4615 4930 3.126000 GGCTGTACAGATTCAACTTGCTC 59.874 47.826 27.08 3.50 0.00 4.26
4643 4958 0.583438 CGTGAACTGGAACACTGCAG 59.417 55.000 13.48 13.48 46.01 4.41
4672 4988 4.701651 ATGATAATGAAGCAGCTGGAGA 57.298 40.909 17.12 0.00 0.00 3.71
4722 5038 7.228507 ACACATTGTTGTTCAGCTATCTGTTAA 59.771 33.333 0.00 0.00 36.42 2.01
4732 5048 6.885735 AAAACTAACACATTGTTGTTCAGC 57.114 33.333 1.73 0.00 41.30 4.26
4783 5099 5.827797 ACACAATTGAGAAGGCTTCTAAACA 59.172 36.000 28.64 19.52 40.87 2.83
4836 5153 0.458025 ACTAGGCAGAAACTACGCGC 60.458 55.000 5.73 0.00 0.00 6.86
4838 5155 4.503370 GTGAATACTAGGCAGAAACTACGC 59.497 45.833 0.00 0.00 0.00 4.42
5024 5341 0.107456 CCACCAGTTCACAGCTCAGT 59.893 55.000 0.00 0.00 0.00 3.41
5124 5448 7.504924 TGCACTAAATATATGGTGTAAAGCC 57.495 36.000 12.29 0.00 32.90 4.35
5188 5704 8.565896 AGCTGTATGAGAATTGTTGATGTTTA 57.434 30.769 0.00 0.00 0.00 2.01
5189 5705 7.362401 GGAGCTGTATGAGAATTGTTGATGTTT 60.362 37.037 0.00 0.00 0.00 2.83
5206 5722 0.176680 CACGCCAGAAGGAGCTGTAT 59.823 55.000 0.00 0.00 38.42 2.29
5225 5741 0.804989 AACGACTGCCAGCAAATAGC 59.195 50.000 0.00 0.00 46.19 2.97
5226 5742 1.398390 GGAACGACTGCCAGCAAATAG 59.602 52.381 0.00 0.00 0.00 1.73
5227 5743 1.448985 GGAACGACTGCCAGCAAATA 58.551 50.000 0.00 0.00 0.00 1.40
5228 5744 1.244019 GGGAACGACTGCCAGCAAAT 61.244 55.000 0.00 0.00 35.04 2.32
5229 5745 1.896660 GGGAACGACTGCCAGCAAA 60.897 57.895 0.00 0.00 35.04 3.68
5230 5746 1.476845 TAGGGAACGACTGCCAGCAA 61.477 55.000 0.00 0.00 38.23 3.91
5242 5758 5.825593 TTCATGTATCTGGGATAGGGAAC 57.174 43.478 0.00 0.00 0.00 3.62
5244 5760 5.476983 ACTTTCATGTATCTGGGATAGGGA 58.523 41.667 0.00 0.00 0.00 4.20
5245 5761 5.832539 ACTTTCATGTATCTGGGATAGGG 57.167 43.478 0.00 0.00 0.00 3.53
5246 5762 6.830912 TGAACTTTCATGTATCTGGGATAGG 58.169 40.000 0.00 0.00 31.01 2.57
5249 5765 6.409005 CCTCTGAACTTTCATGTATCTGGGAT 60.409 42.308 0.00 0.00 36.46 3.85
5250 5766 5.104776 CCTCTGAACTTTCATGTATCTGGGA 60.105 44.000 0.00 0.00 36.46 4.37
5251 5767 5.121811 CCTCTGAACTTTCATGTATCTGGG 58.878 45.833 0.00 0.00 36.46 4.45
5252 5768 4.574013 GCCTCTGAACTTTCATGTATCTGG 59.426 45.833 0.00 0.00 36.46 3.86
5253 5769 5.426504 AGCCTCTGAACTTTCATGTATCTG 58.573 41.667 0.00 0.00 36.46 2.90
5254 5770 5.690464 AGCCTCTGAACTTTCATGTATCT 57.310 39.130 0.00 0.00 36.46 1.98
5255 5771 7.441017 AGATAGCCTCTGAACTTTCATGTATC 58.559 38.462 0.00 0.00 36.46 2.24
5256 5772 7.372260 AGATAGCCTCTGAACTTTCATGTAT 57.628 36.000 0.00 0.00 36.46 2.29
5257 5773 6.798427 AGATAGCCTCTGAACTTTCATGTA 57.202 37.500 0.00 0.00 36.46 2.29
5258 5774 5.690464 AGATAGCCTCTGAACTTTCATGT 57.310 39.130 0.00 0.00 36.46 3.21
5259 5775 6.873076 GGATAGATAGCCTCTGAACTTTCATG 59.127 42.308 0.00 0.00 36.46 3.07
5260 5776 6.295011 CGGATAGATAGCCTCTGAACTTTCAT 60.295 42.308 0.00 0.00 36.46 2.57
5261 5777 5.010112 CGGATAGATAGCCTCTGAACTTTCA 59.990 44.000 0.00 0.00 35.28 2.69
5262 5778 5.241949 TCGGATAGATAGCCTCTGAACTTTC 59.758 44.000 0.00 0.00 35.28 2.62
5263 5779 5.141182 TCGGATAGATAGCCTCTGAACTTT 58.859 41.667 0.00 0.00 35.28 2.66
5264 5780 4.730966 TCGGATAGATAGCCTCTGAACTT 58.269 43.478 0.00 0.00 35.28 2.66
5265 5781 4.374689 TCGGATAGATAGCCTCTGAACT 57.625 45.455 0.00 0.00 35.28 3.01
5266 5782 5.455056 TTTCGGATAGATAGCCTCTGAAC 57.545 43.478 2.76 0.00 34.80 3.18
5267 5783 6.672266 AATTTCGGATAGATAGCCTCTGAA 57.328 37.500 0.00 0.00 35.28 3.02
5268 5784 7.615757 TCATAATTTCGGATAGATAGCCTCTGA 59.384 37.037 0.00 0.00 35.28 3.27
5269 5785 7.776107 TCATAATTTCGGATAGATAGCCTCTG 58.224 38.462 0.00 0.00 35.28 3.35
5270 5786 7.962995 TCATAATTTCGGATAGATAGCCTCT 57.037 36.000 0.00 0.00 38.06 3.69
5298 5814 9.696572 AGTCTGAAACTTGTACTCCTATATACA 57.303 33.333 0.00 0.00 33.03 2.29
5314 5830 3.258372 TGCCGTCTGATAAGTCTGAAACT 59.742 43.478 0.00 0.00 41.10 2.66
5315 5831 3.585862 TGCCGTCTGATAAGTCTGAAAC 58.414 45.455 0.00 0.00 34.62 2.78
5316 5832 3.509967 TCTGCCGTCTGATAAGTCTGAAA 59.490 43.478 0.00 0.00 34.62 2.69
5317 5833 3.089284 TCTGCCGTCTGATAAGTCTGAA 58.911 45.455 0.00 0.00 34.62 3.02
5318 5834 2.423892 GTCTGCCGTCTGATAAGTCTGA 59.576 50.000 0.00 0.00 0.00 3.27
5319 5835 2.164422 TGTCTGCCGTCTGATAAGTCTG 59.836 50.000 0.00 0.00 0.00 3.51
5320 5836 2.164624 GTGTCTGCCGTCTGATAAGTCT 59.835 50.000 0.00 0.00 0.00 3.24
5321 5837 2.531206 GTGTCTGCCGTCTGATAAGTC 58.469 52.381 0.00 0.00 0.00 3.01
5322 5838 1.204941 GGTGTCTGCCGTCTGATAAGT 59.795 52.381 0.00 0.00 0.00 2.24
5323 5839 1.204704 TGGTGTCTGCCGTCTGATAAG 59.795 52.381 0.00 0.00 0.00 1.73
5324 5840 1.204704 CTGGTGTCTGCCGTCTGATAA 59.795 52.381 0.00 0.00 0.00 1.75
5325 5841 0.817654 CTGGTGTCTGCCGTCTGATA 59.182 55.000 0.00 0.00 0.00 2.15
5326 5842 0.900182 TCTGGTGTCTGCCGTCTGAT 60.900 55.000 0.00 0.00 0.00 2.90
5327 5843 1.527433 CTCTGGTGTCTGCCGTCTGA 61.527 60.000 0.00 0.00 0.00 3.27
5328 5844 1.080230 CTCTGGTGTCTGCCGTCTG 60.080 63.158 0.00 0.00 0.00 3.51
5345 5861 7.852263 AGACTGTATTGCTGGTTTATTACTCT 58.148 34.615 0.00 0.00 0.00 3.24
5376 5892 5.051153 GCTAGGTTTCAGTGCTTCCTATAC 58.949 45.833 0.00 0.00 31.58 1.47


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.