Multiple sequence alignment - TraesCS3A01G230800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G230800 chr3A 100.000 2501 0 0 1 2501 431073075 431070575 0.000000e+00 4619.0
1 TraesCS3A01G230800 chr3D 95.975 1441 51 3 453 1891 303465132 303466567 0.000000e+00 2333.0
2 TraesCS3A01G230800 chr3D 100.000 56 0 0 428 483 303465075 303465130 1.220000e-18 104.0
3 TraesCS3A01G230800 chr3B 94.331 1376 45 13 414 1789 417958461 417957119 0.000000e+00 2078.0
4 TraesCS3A01G230800 chr3B 84.314 408 46 14 2079 2473 741347337 741347739 1.400000e-102 383.0
5 TraesCS3A01G230800 chr3B 84.770 348 15 12 76 394 820732598 820732260 5.190000e-82 315.0
6 TraesCS3A01G230800 chr4A 92.750 400 20 4 1 394 639019119 639019515 1.000000e-158 569.0
7 TraesCS3A01G230800 chr2B 98.233 283 5 0 2196 2478 675210943 675210661 1.730000e-136 496.0
8 TraesCS3A01G230800 chr2B 76.630 184 43 0 690 873 252976921 252977104 4.400000e-18 102.0
9 TraesCS3A01G230800 chr5A 88.614 404 29 8 1 392 424904885 424904487 2.250000e-130 475.0
10 TraesCS3A01G230800 chr5A 96.820 283 9 0 2197 2479 581492605 581492887 8.100000e-130 473.0
11 TraesCS3A01G230800 chr5A 88.561 271 31 0 1928 2198 372645338 372645068 1.850000e-86 329.0
12 TraesCS3A01G230800 chr1A 82.931 539 80 8 1943 2473 564268719 564269253 2.250000e-130 475.0
13 TraesCS3A01G230800 chr1A 91.475 305 20 3 2171 2473 14434394 14434694 4.980000e-112 414.0
14 TraesCS3A01G230800 chrUn 96.809 282 9 0 2194 2475 312185229 312185510 2.910000e-129 472.0
15 TraesCS3A01G230800 chr4B 97.133 279 8 0 2197 2475 117068561 117068283 2.910000e-129 472.0
16 TraesCS3A01G230800 chr4B 97.133 279 8 0 2197 2475 117089653 117089375 2.910000e-129 472.0
17 TraesCS3A01G230800 chr4B 87.273 55 7 0 704 758 672308625 672308679 2.080000e-06 63.9
18 TraesCS3A01G230800 chr1B 96.154 286 10 1 2188 2473 519593817 519593533 1.350000e-127 466.0
19 TraesCS3A01G230800 chr1D 82.353 544 68 20 1946 2473 420838294 420837763 4.910000e-122 448.0
20 TraesCS3A01G230800 chr6B 93.525 278 18 0 2199 2476 149608733 149608456 4.980000e-112 414.0
21 TraesCS3A01G230800 chr6B 78.082 511 93 16 1977 2475 50406616 50406113 3.130000e-79 305.0
22 TraesCS3A01G230800 chr6A 83.784 444 62 6 2039 2475 455984156 455984596 1.790000e-111 412.0
23 TraesCS3A01G230800 chr6A 91.882 271 22 0 1928 2198 410761707 410761977 1.820000e-101 379.0
24 TraesCS3A01G230800 chr6A 89.091 275 30 0 1924 2198 92053250 92053524 2.380000e-90 342.0
25 TraesCS3A01G230800 chr6A 88.043 276 31 2 1924 2198 470142240 470142514 2.400000e-85 326.0
26 TraesCS3A01G230800 chr7B 79.374 543 88 19 1941 2473 678089179 678088651 6.580000e-96 361.0
27 TraesCS3A01G230800 chr2A 89.377 273 26 1 1926 2198 21918273 21918542 8.570000e-90 340.0
28 TraesCS3A01G230800 chr2A 76.364 275 59 6 602 873 211694738 211695009 2.590000e-30 143.0
29 TraesCS3A01G230800 chr2D 77.725 211 45 2 664 873 196130635 196130844 7.260000e-26 128.0
30 TraesCS3A01G230800 chr2D 83.333 102 17 0 690 791 196224205 196224306 7.360000e-16 95.3
31 TraesCS3A01G230800 chr5D 76.168 214 51 0 668 881 510059008 510058795 2.030000e-21 113.0
32 TraesCS3A01G230800 chr5B 75.701 214 52 0 668 881 641043403 641043190 9.460000e-20 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G230800 chr3A 431070575 431073075 2500 True 4619.0 4619 100.0000 1 2501 1 chr3A.!!$R1 2500
1 TraesCS3A01G230800 chr3D 303465075 303466567 1492 False 1218.5 2333 97.9875 428 1891 2 chr3D.!!$F1 1463
2 TraesCS3A01G230800 chr3B 417957119 417958461 1342 True 2078.0 2078 94.3310 414 1789 1 chr3B.!!$R1 1375
3 TraesCS3A01G230800 chr1A 564268719 564269253 534 False 475.0 475 82.9310 1943 2473 1 chr1A.!!$F2 530
4 TraesCS3A01G230800 chr1D 420837763 420838294 531 True 448.0 448 82.3530 1946 2473 1 chr1D.!!$R1 527
5 TraesCS3A01G230800 chr6B 50406113 50406616 503 True 305.0 305 78.0820 1977 2475 1 chr6B.!!$R1 498
6 TraesCS3A01G230800 chr7B 678088651 678089179 528 True 361.0 361 79.3740 1941 2473 1 chr7B.!!$R1 532

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
298 299 0.031449 GGGGAGAGAAAGATCGAGCG 59.969 60.0 0.0 0.0 0.0 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1905 1943 0.313987 TGTCACGTCTCGATGTGCTT 59.686 50.0 13.12 0.0 45.44 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 82 9.168451 TGACAACAAAGTAGTCAAAAGAATACA 57.832 29.630 5.98 0.00 39.15 2.29
83 84 9.950680 ACAACAAAGTAGTCAAAAGAATACATG 57.049 29.630 5.98 0.00 0.00 3.21
84 85 8.905702 CAACAAAGTAGTCAAAAGAATACATGC 58.094 33.333 5.98 0.00 0.00 4.06
85 86 8.396272 ACAAAGTAGTCAAAAGAATACATGCT 57.604 30.769 5.98 0.00 0.00 3.79
86 87 9.502091 ACAAAGTAGTCAAAAGAATACATGCTA 57.498 29.630 5.98 0.00 0.00 3.49
87 88 9.979270 CAAAGTAGTCAAAAGAATACATGCTAG 57.021 33.333 5.98 0.00 0.00 3.42
88 89 8.723942 AAGTAGTCAAAAGAATACATGCTAGG 57.276 34.615 5.98 0.00 0.00 3.02
89 90 7.852263 AGTAGTCAAAAGAATACATGCTAGGT 58.148 34.615 5.98 0.00 0.00 3.08
90 91 8.978472 AGTAGTCAAAAGAATACATGCTAGGTA 58.022 33.333 5.98 0.00 0.00 3.08
91 92 9.595823 GTAGTCAAAAGAATACATGCTAGGTAA 57.404 33.333 0.00 0.00 0.00 2.85
93 94 9.167311 AGTCAAAAGAATACATGCTAGGTAAAG 57.833 33.333 0.00 0.00 0.00 1.85
94 95 9.162764 GTCAAAAGAATACATGCTAGGTAAAGA 57.837 33.333 0.00 0.00 0.00 2.52
95 96 9.733556 TCAAAAGAATACATGCTAGGTAAAGAA 57.266 29.630 0.00 0.00 0.00 2.52
98 99 9.959721 AAAGAATACATGCTAGGTAAAGAAAGA 57.040 29.630 0.00 0.00 0.00 2.52
99 100 9.959721 AAGAATACATGCTAGGTAAAGAAAGAA 57.040 29.630 0.00 0.00 0.00 2.52
100 101 9.384764 AGAATACATGCTAGGTAAAGAAAGAAC 57.615 33.333 0.00 0.00 0.00 3.01
101 102 9.162764 GAATACATGCTAGGTAAAGAAAGAACA 57.837 33.333 0.00 0.00 0.00 3.18
102 103 9.515226 AATACATGCTAGGTAAAGAAAGAACAA 57.485 29.630 0.00 0.00 0.00 2.83
103 104 7.203255 ACATGCTAGGTAAAGAAAGAACAAC 57.797 36.000 0.00 0.00 0.00 3.32
104 105 6.206829 ACATGCTAGGTAAAGAAAGAACAACC 59.793 38.462 0.00 0.00 0.00 3.77
105 106 5.686753 TGCTAGGTAAAGAAAGAACAACCA 58.313 37.500 0.00 0.00 0.00 3.67
106 107 5.529800 TGCTAGGTAAAGAAAGAACAACCAC 59.470 40.000 0.00 0.00 0.00 4.16
107 108 5.529800 GCTAGGTAAAGAAAGAACAACCACA 59.470 40.000 0.00 0.00 0.00 4.17
108 109 6.293462 GCTAGGTAAAGAAAGAACAACCACAG 60.293 42.308 0.00 0.00 0.00 3.66
109 110 5.751586 AGGTAAAGAAAGAACAACCACAGA 58.248 37.500 0.00 0.00 0.00 3.41
110 111 6.365520 AGGTAAAGAAAGAACAACCACAGAT 58.634 36.000 0.00 0.00 0.00 2.90
111 112 7.514721 AGGTAAAGAAAGAACAACCACAGATA 58.485 34.615 0.00 0.00 0.00 1.98
112 113 8.164070 AGGTAAAGAAAGAACAACCACAGATAT 58.836 33.333 0.00 0.00 0.00 1.63
113 114 8.793592 GGTAAAGAAAGAACAACCACAGATATT 58.206 33.333 0.00 0.00 0.00 1.28
116 117 8.463930 AAGAAAGAACAACCACAGATATTTGA 57.536 30.769 0.00 0.00 0.00 2.69
117 118 7.875971 AGAAAGAACAACCACAGATATTTGAC 58.124 34.615 0.00 0.00 0.00 3.18
118 119 7.502226 AGAAAGAACAACCACAGATATTTGACA 59.498 33.333 0.00 0.00 0.00 3.58
119 120 7.581213 AAGAACAACCACAGATATTTGACAA 57.419 32.000 0.00 0.00 0.00 3.18
120 121 7.581213 AGAACAACCACAGATATTTGACAAA 57.419 32.000 2.48 2.48 0.00 2.83
121 122 7.425606 AGAACAACCACAGATATTTGACAAAC 58.574 34.615 1.94 0.00 0.00 2.93
122 123 6.084326 ACAACCACAGATATTTGACAAACC 57.916 37.500 1.94 0.00 0.00 3.27
123 124 5.153513 CAACCACAGATATTTGACAAACCG 58.846 41.667 1.94 0.00 0.00 4.44
124 125 4.647611 ACCACAGATATTTGACAAACCGA 58.352 39.130 1.94 0.00 0.00 4.69
125 126 4.695455 ACCACAGATATTTGACAAACCGAG 59.305 41.667 1.94 0.00 0.00 4.63
126 127 4.935205 CCACAGATATTTGACAAACCGAGA 59.065 41.667 1.94 0.00 0.00 4.04
127 128 5.586243 CCACAGATATTTGACAAACCGAGAT 59.414 40.000 1.94 0.00 0.00 2.75
128 129 6.094048 CCACAGATATTTGACAAACCGAGATT 59.906 38.462 1.94 0.00 0.00 2.40
129 130 6.963242 CACAGATATTTGACAAACCGAGATTG 59.037 38.462 1.94 0.00 0.00 2.67
130 131 6.878923 ACAGATATTTGACAAACCGAGATTGA 59.121 34.615 1.94 0.00 0.00 2.57
131 132 7.554118 ACAGATATTTGACAAACCGAGATTGAT 59.446 33.333 1.94 0.00 0.00 2.57
132 133 8.400947 CAGATATTTGACAAACCGAGATTGATT 58.599 33.333 1.94 0.00 0.00 2.57
133 134 8.960591 AGATATTTGACAAACCGAGATTGATTT 58.039 29.630 1.94 0.00 0.00 2.17
134 135 9.573133 GATATTTGACAAACCGAGATTGATTTT 57.427 29.630 1.94 0.00 0.00 1.82
135 136 7.642071 ATTTGACAAACCGAGATTGATTTTG 57.358 32.000 1.94 0.00 34.10 2.44
136 137 5.766150 TGACAAACCGAGATTGATTTTGT 57.234 34.783 0.00 0.00 41.81 2.83
137 138 6.142818 TGACAAACCGAGATTGATTTTGTT 57.857 33.333 0.00 0.00 39.79 2.83
138 139 6.205784 TGACAAACCGAGATTGATTTTGTTC 58.794 36.000 0.00 0.00 39.79 3.18
139 140 6.142818 ACAAACCGAGATTGATTTTGTTCA 57.857 33.333 0.00 0.00 37.13 3.18
140 141 6.208644 ACAAACCGAGATTGATTTTGTTCAG 58.791 36.000 0.00 0.00 37.13 3.02
141 142 5.376854 AACCGAGATTGATTTTGTTCAGG 57.623 39.130 0.00 0.00 0.00 3.86
142 143 4.651778 ACCGAGATTGATTTTGTTCAGGA 58.348 39.130 0.00 0.00 0.00 3.86
143 144 5.256474 ACCGAGATTGATTTTGTTCAGGAT 58.744 37.500 0.00 0.00 0.00 3.24
144 145 5.355350 ACCGAGATTGATTTTGTTCAGGATC 59.645 40.000 0.00 0.00 0.00 3.36
145 146 5.220931 CCGAGATTGATTTTGTTCAGGATCC 60.221 44.000 2.48 2.48 0.00 3.36
146 147 5.355071 CGAGATTGATTTTGTTCAGGATCCA 59.645 40.000 15.82 0.00 0.00 3.41
147 148 6.039047 CGAGATTGATTTTGTTCAGGATCCAT 59.961 38.462 15.82 0.00 0.00 3.41
148 149 7.344095 AGATTGATTTTGTTCAGGATCCATC 57.656 36.000 15.82 6.02 0.00 3.51
149 150 5.565592 TTGATTTTGTTCAGGATCCATCG 57.434 39.130 15.82 1.63 0.00 3.84
150 151 4.842574 TGATTTTGTTCAGGATCCATCGA 58.157 39.130 15.82 4.36 0.00 3.59
151 152 4.877823 TGATTTTGTTCAGGATCCATCGAG 59.122 41.667 15.82 0.00 0.00 4.04
152 153 2.315925 TTGTTCAGGATCCATCGAGC 57.684 50.000 15.82 9.86 0.00 5.03
153 154 1.194218 TGTTCAGGATCCATCGAGCA 58.806 50.000 15.82 12.36 0.00 4.26
154 155 1.137675 TGTTCAGGATCCATCGAGCAG 59.862 52.381 15.82 0.00 0.00 4.24
155 156 1.410517 GTTCAGGATCCATCGAGCAGA 59.589 52.381 15.82 0.00 0.00 4.26
156 157 1.780503 TCAGGATCCATCGAGCAGAA 58.219 50.000 15.82 0.00 0.00 3.02
157 158 1.410517 TCAGGATCCATCGAGCAGAAC 59.589 52.381 15.82 0.00 0.00 3.01
158 159 1.411977 CAGGATCCATCGAGCAGAACT 59.588 52.381 15.82 0.00 0.00 3.01
159 160 2.114616 AGGATCCATCGAGCAGAACTT 58.885 47.619 15.82 0.00 0.00 2.66
160 161 2.102252 AGGATCCATCGAGCAGAACTTC 59.898 50.000 15.82 0.00 0.00 3.01
161 162 2.102252 GGATCCATCGAGCAGAACTTCT 59.898 50.000 6.95 0.00 0.00 2.85
162 163 2.662006 TCCATCGAGCAGAACTTCTG 57.338 50.000 13.68 13.68 46.90 3.02
163 164 1.205655 TCCATCGAGCAGAACTTCTGG 59.794 52.381 18.53 4.45 44.43 3.86
164 165 1.649664 CATCGAGCAGAACTTCTGGG 58.350 55.000 18.53 0.00 44.43 4.45
165 166 1.205655 CATCGAGCAGAACTTCTGGGA 59.794 52.381 18.53 0.00 44.43 4.37
166 167 0.891373 TCGAGCAGAACTTCTGGGAG 59.109 55.000 18.53 0.00 44.43 4.30
167 168 0.891373 CGAGCAGAACTTCTGGGAGA 59.109 55.000 18.53 0.00 44.43 3.71
168 169 1.135141 CGAGCAGAACTTCTGGGAGAG 60.135 57.143 18.53 0.00 44.43 3.20
169 170 2.175202 GAGCAGAACTTCTGGGAGAGA 58.825 52.381 18.53 0.00 44.43 3.10
170 171 2.564947 GAGCAGAACTTCTGGGAGAGAA 59.435 50.000 18.53 0.00 44.43 2.87
171 172 2.301583 AGCAGAACTTCTGGGAGAGAAC 59.698 50.000 18.53 1.73 44.43 3.01
172 173 2.301583 GCAGAACTTCTGGGAGAGAACT 59.698 50.000 18.53 0.00 44.43 3.01
173 174 3.864160 GCAGAACTTCTGGGAGAGAACTG 60.864 52.174 18.53 0.00 44.43 3.16
174 175 2.903135 AGAACTTCTGGGAGAGAACTGG 59.097 50.000 0.00 0.00 35.64 4.00
175 176 0.980423 ACTTCTGGGAGAGAACTGGC 59.020 55.000 0.00 0.00 35.64 4.85
176 177 0.108424 CTTCTGGGAGAGAACTGGCG 60.108 60.000 0.00 0.00 35.64 5.69
177 178 2.125350 CTGGGAGAGAACTGGCGC 60.125 66.667 0.00 0.00 0.00 6.53
178 179 3.997064 CTGGGAGAGAACTGGCGCG 62.997 68.421 0.00 0.00 0.00 6.86
179 180 4.821589 GGGAGAGAACTGGCGCGG 62.822 72.222 8.83 0.00 0.00 6.46
180 181 4.070552 GGAGAGAACTGGCGCGGT 62.071 66.667 8.83 0.00 0.00 5.68
181 182 2.811317 GAGAGAACTGGCGCGGTG 60.811 66.667 8.83 0.00 0.00 4.94
182 183 3.575351 GAGAGAACTGGCGCGGTGT 62.575 63.158 8.83 0.00 0.00 4.16
183 184 2.665185 GAGAACTGGCGCGGTGTT 60.665 61.111 8.83 6.13 0.00 3.32
184 185 1.373748 GAGAACTGGCGCGGTGTTA 60.374 57.895 8.83 0.00 0.00 2.41
185 186 1.623973 GAGAACTGGCGCGGTGTTAC 61.624 60.000 8.83 1.22 0.00 2.50
186 187 1.666872 GAACTGGCGCGGTGTTACT 60.667 57.895 8.83 0.00 0.00 2.24
187 188 1.226030 GAACTGGCGCGGTGTTACTT 61.226 55.000 8.83 0.00 0.00 2.24
188 189 0.816421 AACTGGCGCGGTGTTACTTT 60.816 50.000 8.83 0.00 0.00 2.66
189 190 0.816421 ACTGGCGCGGTGTTACTTTT 60.816 50.000 8.83 0.00 0.00 2.27
190 191 0.385473 CTGGCGCGGTGTTACTTTTG 60.385 55.000 8.83 0.00 0.00 2.44
191 192 0.814410 TGGCGCGGTGTTACTTTTGA 60.814 50.000 8.83 0.00 0.00 2.69
192 193 0.519961 GGCGCGGTGTTACTTTTGAT 59.480 50.000 8.83 0.00 0.00 2.57
193 194 1.068816 GGCGCGGTGTTACTTTTGATT 60.069 47.619 8.83 0.00 0.00 2.57
194 195 1.976045 GCGCGGTGTTACTTTTGATTG 59.024 47.619 8.83 0.00 0.00 2.67
195 196 1.976045 CGCGGTGTTACTTTTGATTGC 59.024 47.619 0.00 0.00 0.00 3.56
196 197 2.350388 CGCGGTGTTACTTTTGATTGCT 60.350 45.455 0.00 0.00 0.00 3.91
197 198 3.120477 CGCGGTGTTACTTTTGATTGCTA 60.120 43.478 0.00 0.00 0.00 3.49
198 199 4.403453 GCGGTGTTACTTTTGATTGCTAG 58.597 43.478 0.00 0.00 0.00 3.42
199 200 4.153475 GCGGTGTTACTTTTGATTGCTAGA 59.847 41.667 0.00 0.00 0.00 2.43
200 201 5.163754 GCGGTGTTACTTTTGATTGCTAGAT 60.164 40.000 0.00 0.00 0.00 1.98
201 202 6.478588 CGGTGTTACTTTTGATTGCTAGATC 58.521 40.000 0.00 0.00 0.00 2.75
202 203 6.313905 CGGTGTTACTTTTGATTGCTAGATCT 59.686 38.462 0.00 0.00 0.00 2.75
203 204 7.148407 CGGTGTTACTTTTGATTGCTAGATCTT 60.148 37.037 0.00 0.00 0.00 2.40
204 205 7.965107 GGTGTTACTTTTGATTGCTAGATCTTG 59.035 37.037 0.00 0.00 0.00 3.02
205 206 8.507249 GTGTTACTTTTGATTGCTAGATCTTGT 58.493 33.333 0.00 0.00 0.00 3.16
206 207 8.506437 TGTTACTTTTGATTGCTAGATCTTGTG 58.494 33.333 0.00 0.00 0.00 3.33
207 208 8.507249 GTTACTTTTGATTGCTAGATCTTGTGT 58.493 33.333 0.00 0.00 0.00 3.72
208 209 7.516198 ACTTTTGATTGCTAGATCTTGTGTT 57.484 32.000 0.00 0.00 0.00 3.32
209 210 7.588512 ACTTTTGATTGCTAGATCTTGTGTTC 58.411 34.615 0.00 0.00 0.00 3.18
210 211 7.446625 ACTTTTGATTGCTAGATCTTGTGTTCT 59.553 33.333 0.00 0.00 0.00 3.01
211 212 7.750229 TTTGATTGCTAGATCTTGTGTTCTT 57.250 32.000 0.00 0.00 0.00 2.52
212 213 6.732531 TGATTGCTAGATCTTGTGTTCTTG 57.267 37.500 0.00 0.00 0.00 3.02
213 214 5.645067 TGATTGCTAGATCTTGTGTTCTTGG 59.355 40.000 0.00 0.00 0.00 3.61
214 215 4.890158 TGCTAGATCTTGTGTTCTTGGA 57.110 40.909 0.00 0.00 0.00 3.53
215 216 4.825422 TGCTAGATCTTGTGTTCTTGGAG 58.175 43.478 0.00 0.00 0.00 3.86
216 217 4.528206 TGCTAGATCTTGTGTTCTTGGAGA 59.472 41.667 0.00 0.00 0.00 3.71
217 218 5.108517 GCTAGATCTTGTGTTCTTGGAGAG 58.891 45.833 0.00 0.00 0.00 3.20
218 219 5.337169 GCTAGATCTTGTGTTCTTGGAGAGT 60.337 44.000 0.00 0.00 0.00 3.24
219 220 6.127591 GCTAGATCTTGTGTTCTTGGAGAGTA 60.128 42.308 0.00 0.00 0.00 2.59
220 221 6.672266 AGATCTTGTGTTCTTGGAGAGTAA 57.328 37.500 0.00 0.00 0.00 2.24
221 222 6.696411 AGATCTTGTGTTCTTGGAGAGTAAG 58.304 40.000 0.00 0.00 0.00 2.34
222 223 5.215252 TCTTGTGTTCTTGGAGAGTAAGG 57.785 43.478 0.00 0.00 0.00 2.69
223 224 4.899457 TCTTGTGTTCTTGGAGAGTAAGGA 59.101 41.667 0.00 0.00 0.00 3.36
224 225 4.873746 TGTGTTCTTGGAGAGTAAGGAG 57.126 45.455 0.00 0.00 0.00 3.69
225 226 4.223953 TGTGTTCTTGGAGAGTAAGGAGT 58.776 43.478 0.00 0.00 0.00 3.85
226 227 5.391256 TGTGTTCTTGGAGAGTAAGGAGTA 58.609 41.667 0.00 0.00 0.00 2.59
227 228 5.477291 TGTGTTCTTGGAGAGTAAGGAGTAG 59.523 44.000 0.00 0.00 0.00 2.57
228 229 4.463186 TGTTCTTGGAGAGTAAGGAGTAGC 59.537 45.833 0.00 0.00 0.00 3.58
229 230 3.633418 TCTTGGAGAGTAAGGAGTAGCC 58.367 50.000 0.00 0.00 0.00 3.93
230 231 2.054232 TGGAGAGTAAGGAGTAGCCG 57.946 55.000 0.00 0.00 43.43 5.52
231 232 1.320507 GGAGAGTAAGGAGTAGCCGG 58.679 60.000 0.00 0.00 43.43 6.13
232 233 0.669619 GAGAGTAAGGAGTAGCCGGC 59.330 60.000 21.89 21.89 43.43 6.13
233 234 1.102222 AGAGTAAGGAGTAGCCGGCG 61.102 60.000 23.20 0.00 43.43 6.46
234 235 1.379576 AGTAAGGAGTAGCCGGCGT 60.380 57.895 23.20 10.17 43.43 5.68
235 236 0.107017 AGTAAGGAGTAGCCGGCGTA 60.107 55.000 23.20 11.25 43.43 4.42
236 237 0.957362 GTAAGGAGTAGCCGGCGTAT 59.043 55.000 23.20 10.83 43.43 3.06
237 238 1.339291 GTAAGGAGTAGCCGGCGTATT 59.661 52.381 23.20 13.55 43.43 1.89
238 239 0.104304 AAGGAGTAGCCGGCGTATTG 59.896 55.000 23.20 0.00 43.43 1.90
239 240 1.300697 GGAGTAGCCGGCGTATTGG 60.301 63.158 23.20 0.00 0.00 3.16
240 241 1.737816 GAGTAGCCGGCGTATTGGA 59.262 57.895 23.20 0.00 0.00 3.53
241 242 0.318784 GAGTAGCCGGCGTATTGGAG 60.319 60.000 23.20 0.00 0.00 3.86
242 243 0.754217 AGTAGCCGGCGTATTGGAGA 60.754 55.000 23.20 0.00 0.00 3.71
243 244 0.103572 GTAGCCGGCGTATTGGAGAA 59.896 55.000 23.20 0.00 0.00 2.87
244 245 0.387929 TAGCCGGCGTATTGGAGAAG 59.612 55.000 23.20 0.00 0.00 2.85
245 246 1.143183 GCCGGCGTATTGGAGAAGA 59.857 57.895 12.58 0.00 0.00 2.87
246 247 0.461339 GCCGGCGTATTGGAGAAGAA 60.461 55.000 12.58 0.00 0.00 2.52
247 248 1.287425 CCGGCGTATTGGAGAAGAAC 58.713 55.000 6.01 0.00 0.00 3.01
248 249 1.134788 CCGGCGTATTGGAGAAGAACT 60.135 52.381 6.01 0.00 0.00 3.01
249 250 2.100252 CCGGCGTATTGGAGAAGAACTA 59.900 50.000 6.01 0.00 0.00 2.24
250 251 3.372954 CGGCGTATTGGAGAAGAACTAG 58.627 50.000 0.00 0.00 0.00 2.57
251 252 3.066342 CGGCGTATTGGAGAAGAACTAGA 59.934 47.826 0.00 0.00 0.00 2.43
252 253 4.439700 CGGCGTATTGGAGAAGAACTAGAA 60.440 45.833 0.00 0.00 0.00 2.10
253 254 5.416947 GGCGTATTGGAGAAGAACTAGAAA 58.583 41.667 0.00 0.00 0.00 2.52
254 255 5.873164 GGCGTATTGGAGAAGAACTAGAAAA 59.127 40.000 0.00 0.00 0.00 2.29
255 256 6.183360 GGCGTATTGGAGAAGAACTAGAAAAC 60.183 42.308 0.00 0.00 0.00 2.43
256 257 6.183360 GCGTATTGGAGAAGAACTAGAAAACC 60.183 42.308 0.00 0.00 0.00 3.27
257 258 7.097834 CGTATTGGAGAAGAACTAGAAAACCT 58.902 38.462 0.00 0.00 0.00 3.50
258 259 8.248945 CGTATTGGAGAAGAACTAGAAAACCTA 58.751 37.037 0.00 0.00 0.00 3.08
260 261 7.850935 TTGGAGAAGAACTAGAAAACCTAGA 57.149 36.000 0.00 0.00 46.17 2.43
261 262 8.437274 TTGGAGAAGAACTAGAAAACCTAGAT 57.563 34.615 0.00 0.00 46.17 1.98
262 263 9.543231 TTGGAGAAGAACTAGAAAACCTAGATA 57.457 33.333 0.00 0.00 46.17 1.98
263 264 8.968969 TGGAGAAGAACTAGAAAACCTAGATAC 58.031 37.037 0.00 0.00 46.17 2.24
264 265 8.968969 GGAGAAGAACTAGAAAACCTAGATACA 58.031 37.037 0.00 0.00 46.17 2.29
280 281 9.408648 ACCTAGATACATAATTTGGAAAACTGG 57.591 33.333 0.00 0.00 0.00 4.00
281 282 8.850156 CCTAGATACATAATTTGGAAAACTGGG 58.150 37.037 0.00 0.00 0.00 4.45
282 283 7.660030 AGATACATAATTTGGAAAACTGGGG 57.340 36.000 0.00 0.00 0.00 4.96
283 284 7.418378 AGATACATAATTTGGAAAACTGGGGA 58.582 34.615 0.00 0.00 0.00 4.81
284 285 7.561356 AGATACATAATTTGGAAAACTGGGGAG 59.439 37.037 0.00 0.00 0.00 4.30
285 286 5.650283 ACATAATTTGGAAAACTGGGGAGA 58.350 37.500 0.00 0.00 0.00 3.71
286 287 5.716703 ACATAATTTGGAAAACTGGGGAGAG 59.283 40.000 0.00 0.00 0.00 3.20
287 288 4.469469 AATTTGGAAAACTGGGGAGAGA 57.531 40.909 0.00 0.00 0.00 3.10
288 289 3.963476 TTTGGAAAACTGGGGAGAGAA 57.037 42.857 0.00 0.00 0.00 2.87
289 290 3.963476 TTGGAAAACTGGGGAGAGAAA 57.037 42.857 0.00 0.00 0.00 2.52
290 291 3.508845 TGGAAAACTGGGGAGAGAAAG 57.491 47.619 0.00 0.00 0.00 2.62
291 292 3.053077 TGGAAAACTGGGGAGAGAAAGA 58.947 45.455 0.00 0.00 0.00 2.52
292 293 3.657727 TGGAAAACTGGGGAGAGAAAGAT 59.342 43.478 0.00 0.00 0.00 2.40
293 294 4.263506 TGGAAAACTGGGGAGAGAAAGATC 60.264 45.833 0.00 0.00 0.00 2.75
294 295 3.618690 AAACTGGGGAGAGAAAGATCG 57.381 47.619 0.00 0.00 0.00 3.69
295 296 2.534042 ACTGGGGAGAGAAAGATCGA 57.466 50.000 0.00 0.00 0.00 3.59
296 297 2.383855 ACTGGGGAGAGAAAGATCGAG 58.616 52.381 0.00 0.00 0.00 4.04
297 298 1.068434 CTGGGGAGAGAAAGATCGAGC 59.932 57.143 0.00 0.00 0.00 5.03
298 299 0.031449 GGGGAGAGAAAGATCGAGCG 59.969 60.000 0.00 0.00 0.00 5.03
299 300 0.741915 GGGAGAGAAAGATCGAGCGT 59.258 55.000 0.00 0.00 0.00 5.07
300 301 1.135333 GGGAGAGAAAGATCGAGCGTT 59.865 52.381 0.36 0.36 0.00 4.84
301 302 2.417515 GGGAGAGAAAGATCGAGCGTTT 60.418 50.000 2.84 0.66 0.00 3.60
302 303 2.600867 GGAGAGAAAGATCGAGCGTTTG 59.399 50.000 2.84 0.00 0.00 2.93
303 304 3.246619 GAGAGAAAGATCGAGCGTTTGT 58.753 45.455 2.84 0.00 0.00 2.83
304 305 3.654414 AGAGAAAGATCGAGCGTTTGTT 58.346 40.909 2.84 0.00 0.00 2.83
305 306 4.058817 AGAGAAAGATCGAGCGTTTGTTT 58.941 39.130 2.84 0.00 0.00 2.83
306 307 4.511826 AGAGAAAGATCGAGCGTTTGTTTT 59.488 37.500 2.84 0.00 0.00 2.43
307 308 4.773510 AGAAAGATCGAGCGTTTGTTTTC 58.226 39.130 2.84 3.19 0.00 2.29
308 309 4.511826 AGAAAGATCGAGCGTTTGTTTTCT 59.488 37.500 2.84 5.49 0.00 2.52
309 310 3.795561 AGATCGAGCGTTTGTTTTCTG 57.204 42.857 0.00 0.00 0.00 3.02
310 311 3.131396 AGATCGAGCGTTTGTTTTCTGT 58.869 40.909 0.00 0.00 0.00 3.41
311 312 2.730183 TCGAGCGTTTGTTTTCTGTG 57.270 45.000 0.00 0.00 0.00 3.66
312 313 1.112459 CGAGCGTTTGTTTTCTGTGC 58.888 50.000 0.00 0.00 0.00 4.57
313 314 1.112459 GAGCGTTTGTTTTCTGTGCG 58.888 50.000 0.00 0.00 0.00 5.34
314 315 0.730265 AGCGTTTGTTTTCTGTGCGA 59.270 45.000 0.00 0.00 0.00 5.10
315 316 1.112459 GCGTTTGTTTTCTGTGCGAG 58.888 50.000 0.00 0.00 0.00 5.03
316 317 1.267832 GCGTTTGTTTTCTGTGCGAGA 60.268 47.619 0.00 0.00 0.00 4.04
317 318 2.789779 GCGTTTGTTTTCTGTGCGAGAA 60.790 45.455 0.00 0.00 39.05 2.87
318 319 3.421741 CGTTTGTTTTCTGTGCGAGAAA 58.578 40.909 6.63 6.63 46.93 2.52
330 331 2.890371 GAGAAACCTCGGCGGCTA 59.110 61.111 7.21 0.00 35.61 3.93
331 332 1.442148 GAGAAACCTCGGCGGCTAT 59.558 57.895 7.21 0.00 35.61 2.97
332 333 0.672342 GAGAAACCTCGGCGGCTATA 59.328 55.000 7.21 0.00 35.61 1.31
333 334 0.388294 AGAAACCTCGGCGGCTATAC 59.612 55.000 7.21 0.00 35.61 1.47
334 335 0.938168 GAAACCTCGGCGGCTATACG 60.938 60.000 7.21 0.00 35.61 3.06
335 336 1.386525 AAACCTCGGCGGCTATACGA 61.387 55.000 7.21 0.00 35.61 3.43
336 337 1.177256 AACCTCGGCGGCTATACGAT 61.177 55.000 7.21 0.00 35.93 3.73
337 338 1.154016 CCTCGGCGGCTATACGATG 60.154 63.158 7.21 0.00 35.93 3.84
338 339 1.801913 CTCGGCGGCTATACGATGC 60.802 63.158 7.21 0.00 35.93 3.91
339 340 2.049526 CGGCGGCTATACGATGCA 60.050 61.111 7.61 0.00 35.47 3.96
340 341 1.446099 CGGCGGCTATACGATGCAT 60.446 57.895 7.61 0.00 35.47 3.96
341 342 1.413767 CGGCGGCTATACGATGCATC 61.414 60.000 17.10 17.10 35.47 3.91
342 343 0.389817 GGCGGCTATACGATGCATCA 60.390 55.000 25.70 8.36 35.47 3.07
343 344 0.994995 GCGGCTATACGATGCATCAG 59.005 55.000 25.70 19.44 35.47 2.90
344 345 1.402852 GCGGCTATACGATGCATCAGA 60.403 52.381 25.70 13.25 35.47 3.27
345 346 2.736719 GCGGCTATACGATGCATCAGAT 60.737 50.000 25.70 18.88 35.47 2.90
346 347 3.111838 CGGCTATACGATGCATCAGATC 58.888 50.000 25.70 9.32 35.47 2.75
347 348 3.111838 GGCTATACGATGCATCAGATCG 58.888 50.000 25.70 15.72 46.55 3.69
348 349 2.533535 GCTATACGATGCATCAGATCGC 59.466 50.000 25.70 19.32 45.34 4.58
349 350 3.733380 GCTATACGATGCATCAGATCGCT 60.733 47.826 25.70 7.41 45.34 4.93
350 351 4.496507 GCTATACGATGCATCAGATCGCTA 60.497 45.833 25.70 8.91 45.34 4.26
351 352 2.800881 ACGATGCATCAGATCGCTAA 57.199 45.000 25.70 0.00 45.34 3.09
352 353 2.398498 ACGATGCATCAGATCGCTAAC 58.602 47.619 25.70 0.00 45.34 2.34
353 354 1.723542 CGATGCATCAGATCGCTAACC 59.276 52.381 25.70 0.00 36.60 2.85
354 355 2.608998 CGATGCATCAGATCGCTAACCT 60.609 50.000 25.70 0.00 36.60 3.50
355 356 3.366374 CGATGCATCAGATCGCTAACCTA 60.366 47.826 25.70 0.00 36.60 3.08
356 357 3.650070 TGCATCAGATCGCTAACCTAG 57.350 47.619 6.44 0.00 0.00 3.02
357 358 3.222603 TGCATCAGATCGCTAACCTAGA 58.777 45.455 0.00 0.00 0.00 2.43
358 359 3.004839 TGCATCAGATCGCTAACCTAGAC 59.995 47.826 0.00 0.00 0.00 2.59
359 360 3.816091 CATCAGATCGCTAACCTAGACG 58.184 50.000 0.00 0.00 0.00 4.18
360 361 1.602851 TCAGATCGCTAACCTAGACGC 59.397 52.381 0.00 0.00 0.00 5.19
361 362 1.604755 CAGATCGCTAACCTAGACGCT 59.395 52.381 0.00 0.00 0.00 5.07
362 363 2.033550 CAGATCGCTAACCTAGACGCTT 59.966 50.000 0.00 0.00 0.00 4.68
363 364 2.688958 AGATCGCTAACCTAGACGCTTT 59.311 45.455 0.00 0.00 0.00 3.51
364 365 2.556534 TCGCTAACCTAGACGCTTTC 57.443 50.000 0.00 0.00 0.00 2.62
365 366 1.133790 TCGCTAACCTAGACGCTTTCC 59.866 52.381 0.00 0.00 0.00 3.13
366 367 1.134560 CGCTAACCTAGACGCTTTCCT 59.865 52.381 0.00 0.00 0.00 3.36
367 368 2.416972 CGCTAACCTAGACGCTTTCCTT 60.417 50.000 0.00 0.00 0.00 3.36
368 369 3.597255 GCTAACCTAGACGCTTTCCTTT 58.403 45.455 0.00 0.00 0.00 3.11
369 370 4.001652 GCTAACCTAGACGCTTTCCTTTT 58.998 43.478 0.00 0.00 0.00 2.27
370 371 4.093115 GCTAACCTAGACGCTTTCCTTTTC 59.907 45.833 0.00 0.00 0.00 2.29
371 372 3.055209 ACCTAGACGCTTTCCTTTTCC 57.945 47.619 0.00 0.00 0.00 3.13
372 373 2.290134 ACCTAGACGCTTTCCTTTTCCC 60.290 50.000 0.00 0.00 0.00 3.97
373 374 2.000447 CTAGACGCTTTCCTTTTCCCG 59.000 52.381 0.00 0.00 0.00 5.14
374 375 0.395312 AGACGCTTTCCTTTTCCCGA 59.605 50.000 0.00 0.00 0.00 5.14
375 376 0.796927 GACGCTTTCCTTTTCCCGAG 59.203 55.000 0.00 0.00 0.00 4.63
376 377 0.108019 ACGCTTTCCTTTTCCCGAGT 59.892 50.000 0.00 0.00 0.00 4.18
377 378 1.235724 CGCTTTCCTTTTCCCGAGTT 58.764 50.000 0.00 0.00 0.00 3.01
378 379 2.224354 ACGCTTTCCTTTTCCCGAGTTA 60.224 45.455 0.00 0.00 0.00 2.24
379 380 2.809696 CGCTTTCCTTTTCCCGAGTTAA 59.190 45.455 0.00 0.00 0.00 2.01
380 381 3.364664 CGCTTTCCTTTTCCCGAGTTAAC 60.365 47.826 0.00 0.00 0.00 2.01
381 382 3.057736 GCTTTCCTTTTCCCGAGTTAACC 60.058 47.826 0.88 0.00 0.00 2.85
382 383 3.860968 TTCCTTTTCCCGAGTTAACCA 57.139 42.857 0.88 0.00 0.00 3.67
383 384 3.412237 TCCTTTTCCCGAGTTAACCAG 57.588 47.619 0.88 0.00 0.00 4.00
384 385 2.039348 TCCTTTTCCCGAGTTAACCAGG 59.961 50.000 0.88 5.99 0.00 4.45
385 386 1.810755 CTTTTCCCGAGTTAACCAGGC 59.189 52.381 10.54 0.00 0.00 4.85
386 387 0.037160 TTTCCCGAGTTAACCAGGCC 59.963 55.000 10.54 0.00 0.00 5.19
387 388 2.125269 CCCGAGTTAACCAGGCCG 60.125 66.667 10.54 0.00 0.00 6.13
388 389 2.652095 CCCGAGTTAACCAGGCCGA 61.652 63.158 10.54 0.00 0.00 5.54
389 390 1.520666 CCGAGTTAACCAGGCCGAT 59.479 57.895 0.88 0.00 0.00 4.18
390 391 0.810031 CCGAGTTAACCAGGCCGATG 60.810 60.000 0.88 0.00 0.00 3.84
391 392 0.810031 CGAGTTAACCAGGCCGATGG 60.810 60.000 9.48 9.48 46.47 3.51
392 393 0.539986 GAGTTAACCAGGCCGATGGA 59.460 55.000 17.65 0.00 43.57 3.41
393 394 0.252197 AGTTAACCAGGCCGATGGAC 59.748 55.000 17.65 5.72 43.57 4.02
394 395 0.035820 GTTAACCAGGCCGATGGACA 60.036 55.000 17.65 2.03 43.57 4.02
395 396 0.916086 TTAACCAGGCCGATGGACAT 59.084 50.000 17.65 6.10 43.57 3.06
396 397 0.180171 TAACCAGGCCGATGGACATG 59.820 55.000 17.65 0.00 43.57 3.21
397 398 1.561769 AACCAGGCCGATGGACATGA 61.562 55.000 17.65 0.00 43.57 3.07
398 399 1.224315 CCAGGCCGATGGACATGAA 59.776 57.895 5.01 0.00 43.57 2.57
399 400 0.394216 CCAGGCCGATGGACATGAAA 60.394 55.000 5.01 0.00 43.57 2.69
400 401 1.462616 CAGGCCGATGGACATGAAAA 58.537 50.000 0.00 0.00 29.21 2.29
401 402 2.026641 CAGGCCGATGGACATGAAAAT 58.973 47.619 0.00 0.00 29.21 1.82
402 403 3.213506 CAGGCCGATGGACATGAAAATA 58.786 45.455 0.00 0.00 29.21 1.40
403 404 3.251729 CAGGCCGATGGACATGAAAATAG 59.748 47.826 0.00 0.00 29.21 1.73
404 405 3.117888 AGGCCGATGGACATGAAAATAGT 60.118 43.478 0.00 0.00 29.21 2.12
405 406 4.102524 AGGCCGATGGACATGAAAATAGTA 59.897 41.667 0.00 0.00 29.21 1.82
406 407 4.213482 GGCCGATGGACATGAAAATAGTAC 59.787 45.833 0.00 0.00 0.00 2.73
407 408 5.057149 GCCGATGGACATGAAAATAGTACT 58.943 41.667 0.00 0.00 0.00 2.73
408 409 5.050091 GCCGATGGACATGAAAATAGTACTG 60.050 44.000 5.39 0.00 0.00 2.74
409 410 5.466728 CCGATGGACATGAAAATAGTACTGG 59.533 44.000 5.39 0.00 0.00 4.00
410 411 6.049149 CGATGGACATGAAAATAGTACTGGT 58.951 40.000 5.39 0.00 0.00 4.00
411 412 6.201044 CGATGGACATGAAAATAGTACTGGTC 59.799 42.308 5.39 0.00 0.00 4.02
412 413 6.367374 TGGACATGAAAATAGTACTGGTCA 57.633 37.500 5.39 4.00 0.00 4.02
424 425 5.855740 AGTACTGGTCAGGTAAGAATAGC 57.144 43.478 0.00 0.00 0.00 2.97
517 555 7.654022 AAACTAACCTTGTGATTCTTGGAAA 57.346 32.000 0.00 0.00 0.00 3.13
523 561 3.593442 TGTGATTCTTGGAAACAGGGT 57.407 42.857 0.00 0.00 44.54 4.34
716 754 4.508128 GGAGATCGCGGCGACCAA 62.508 66.667 28.88 5.43 39.18 3.67
1277 1315 1.569493 CCAAGAAGACGCGGTTGTG 59.431 57.895 12.47 4.11 0.00 3.33
1499 1537 2.589540 CATGGCCGGCTCCAACTA 59.410 61.111 28.56 4.57 39.96 2.24
1530 1568 1.203013 AGTGGGGGTTTGCTTAAGGTC 60.203 52.381 4.29 0.00 0.00 3.85
1582 1620 0.972134 TGTGGAGCAACTGAGGAGAG 59.028 55.000 0.00 0.00 0.00 3.20
1596 1634 3.289407 AGGAGAGCCTTTAATTGGAGC 57.711 47.619 0.00 0.00 43.90 4.70
1599 1637 1.282157 AGAGCCTTTAATTGGAGCCGT 59.718 47.619 0.00 0.00 0.00 5.68
1651 1689 3.567164 GGATTGATGATTGACCATTCGCT 59.433 43.478 0.00 0.00 0.00 4.93
1652 1690 4.534168 GATTGATGATTGACCATTCGCTG 58.466 43.478 0.00 0.00 0.00 5.18
1653 1691 2.989909 TGATGATTGACCATTCGCTGT 58.010 42.857 0.00 0.00 0.00 4.40
1654 1692 2.679336 TGATGATTGACCATTCGCTGTG 59.321 45.455 0.00 0.00 0.00 3.66
1661 1699 1.806542 GACCATTCGCTGTGTGTGATT 59.193 47.619 0.00 0.00 34.87 2.57
1711 1749 1.004918 GGTTCCACGTGGAGACCAG 60.005 63.158 37.35 17.57 46.36 4.00
1736 1774 1.468736 GCGACCCGTTAACCTAGTGAG 60.469 57.143 0.00 0.00 0.00 3.51
1817 1855 0.032540 CAAAGTCTTTGCAGGGCCAC 59.967 55.000 12.26 0.00 33.36 5.01
1823 1861 0.320946 CTTTGCAGGGCCACCAATTG 60.321 55.000 6.18 0.00 40.13 2.32
1862 1900 1.141645 TTTTCGCGCACATACGACTT 58.858 45.000 8.75 0.00 38.17 3.01
1867 1905 0.370273 GCGCACATACGACTTCCAAG 59.630 55.000 0.30 0.00 34.06 3.61
1910 1948 6.799786 TTTTAACAGTTTTCGCTAAAGCAC 57.200 33.333 2.44 0.00 42.21 4.40
1911 1949 5.487153 TTAACAGTTTTCGCTAAAGCACA 57.513 34.783 2.44 0.00 42.21 4.57
1912 1950 4.568152 AACAGTTTTCGCTAAAGCACAT 57.432 36.364 2.44 0.00 42.21 3.21
1913 1951 4.147219 ACAGTTTTCGCTAAAGCACATC 57.853 40.909 2.44 0.00 42.21 3.06
1914 1952 3.155998 CAGTTTTCGCTAAAGCACATCG 58.844 45.455 2.44 0.00 42.21 3.84
1915 1953 3.064207 AGTTTTCGCTAAAGCACATCGA 58.936 40.909 2.44 0.00 42.21 3.59
1916 1954 3.123621 AGTTTTCGCTAAAGCACATCGAG 59.876 43.478 2.44 0.00 42.21 4.04
1917 1955 2.647529 TTCGCTAAAGCACATCGAGA 57.352 45.000 2.44 0.00 42.21 4.04
1918 1956 1.909376 TCGCTAAAGCACATCGAGAC 58.091 50.000 2.44 0.00 42.21 3.36
1919 1957 0.567968 CGCTAAAGCACATCGAGACG 59.432 55.000 2.44 0.00 42.21 4.18
1920 1958 1.630148 GCTAAAGCACATCGAGACGT 58.370 50.000 0.00 0.00 41.59 4.34
1921 1959 1.321743 GCTAAAGCACATCGAGACGTG 59.678 52.381 0.00 7.79 41.59 4.49
1922 1960 2.863739 CTAAAGCACATCGAGACGTGA 58.136 47.619 14.57 0.00 35.02 4.35
1923 1961 1.419374 AAAGCACATCGAGACGTGAC 58.581 50.000 14.57 7.37 35.02 3.67
1924 1962 0.313987 AAGCACATCGAGACGTGACA 59.686 50.000 14.57 0.00 35.02 3.58
1925 1963 0.528017 AGCACATCGAGACGTGACAT 59.472 50.000 14.57 0.00 35.02 3.06
1926 1964 1.743394 AGCACATCGAGACGTGACATA 59.257 47.619 14.57 0.00 35.02 2.29
1927 1965 2.163613 AGCACATCGAGACGTGACATAA 59.836 45.455 14.57 0.00 35.02 1.90
1928 1966 2.531912 GCACATCGAGACGTGACATAAG 59.468 50.000 14.57 0.00 35.02 1.73
1929 1967 3.108881 CACATCGAGACGTGACATAAGG 58.891 50.000 0.00 0.00 35.02 2.69
1930 1968 2.120232 CATCGAGACGTGACATAAGGC 58.880 52.381 0.00 0.00 0.00 4.35
1931 1969 1.460504 TCGAGACGTGACATAAGGCT 58.539 50.000 0.00 0.00 0.00 4.58
1932 1970 1.132453 TCGAGACGTGACATAAGGCTG 59.868 52.381 0.00 0.00 0.00 4.85
1933 1971 1.799181 CGAGACGTGACATAAGGCTGG 60.799 57.143 0.00 0.00 0.00 4.85
1934 1972 1.204941 GAGACGTGACATAAGGCTGGT 59.795 52.381 0.00 0.00 0.00 4.00
1935 1973 1.623811 AGACGTGACATAAGGCTGGTT 59.376 47.619 0.00 0.00 0.00 3.67
1936 1974 2.829720 AGACGTGACATAAGGCTGGTTA 59.170 45.455 0.00 0.00 0.00 2.85
1937 1975 3.451178 AGACGTGACATAAGGCTGGTTAT 59.549 43.478 0.00 0.00 0.00 1.89
1938 1976 4.647853 AGACGTGACATAAGGCTGGTTATA 59.352 41.667 0.00 0.00 0.00 0.98
1939 1977 4.945246 ACGTGACATAAGGCTGGTTATAG 58.055 43.478 0.00 0.00 0.00 1.31
1959 1997 9.413734 GTTATAGTGGGGAGTAACTTAGACTAA 57.586 37.037 0.00 0.00 0.00 2.24
2036 2074 8.883731 ACATAATAGTTGTGTCATAAGTTGCTC 58.116 33.333 0.00 0.00 28.01 4.26
2047 2085 9.226345 GTGTCATAAGTTGCTCTATTTATTTGC 57.774 33.333 0.00 0.00 0.00 3.68
2049 2087 9.657121 GTCATAAGTTGCTCTATTTATTTGCTC 57.343 33.333 0.00 0.00 0.00 4.26
2059 2097 9.265901 GCTCTATTTATTTGCTCATAGACTCAA 57.734 33.333 0.00 0.00 0.00 3.02
2065 2103 9.844790 TTTATTTGCTCATAGACTCAACATTTG 57.155 29.630 0.00 0.00 0.00 2.32
2157 2195 4.511082 CCACATAAGCAAACTTGTTTTGGG 59.489 41.667 0.00 0.00 44.34 4.12
2175 2213 5.601583 TTGGGATGCGTTATGTTACTAGA 57.398 39.130 0.00 0.00 0.00 2.43
2210 2258 5.246203 CCACTATGACTAAGGCTAGCCATAA 59.754 44.000 34.70 18.23 32.16 1.90
2265 2313 5.304101 TCCCAAGACAATTTTGCTTATGTGT 59.696 36.000 0.00 0.00 0.00 3.72
2281 2329 9.665719 TGCTTATGTGTCAAGTATTTAATGAGA 57.334 29.630 0.00 0.00 0.00 3.27
2353 2401 4.442052 CCGAGGCAAAATGAGTCTATGAGA 60.442 45.833 0.00 0.00 0.00 3.27
2475 2523 1.141053 CCCCACTATGACCAGCCTAAC 59.859 57.143 0.00 0.00 0.00 2.34
2476 2524 1.141053 CCCACTATGACCAGCCTAACC 59.859 57.143 0.00 0.00 0.00 2.85
2477 2525 2.119495 CCACTATGACCAGCCTAACCT 58.881 52.381 0.00 0.00 0.00 3.50
2478 2526 3.305720 CCACTATGACCAGCCTAACCTA 58.694 50.000 0.00 0.00 0.00 3.08
2479 2527 3.709653 CCACTATGACCAGCCTAACCTAA 59.290 47.826 0.00 0.00 0.00 2.69
2480 2528 4.202264 CCACTATGACCAGCCTAACCTAAG 60.202 50.000 0.00 0.00 0.00 2.18
2481 2529 4.406003 CACTATGACCAGCCTAACCTAAGT 59.594 45.833 0.00 0.00 0.00 2.24
2482 2530 5.597182 CACTATGACCAGCCTAACCTAAGTA 59.403 44.000 0.00 0.00 0.00 2.24
2483 2531 6.267928 CACTATGACCAGCCTAACCTAAGTAT 59.732 42.308 0.00 0.00 0.00 2.12
2484 2532 6.844917 ACTATGACCAGCCTAACCTAAGTATT 59.155 38.462 0.00 0.00 0.00 1.89
2485 2533 5.353394 TGACCAGCCTAACCTAAGTATTG 57.647 43.478 0.00 0.00 0.00 1.90
2486 2534 4.127907 GACCAGCCTAACCTAAGTATTGC 58.872 47.826 0.00 0.00 0.00 3.56
2487 2535 3.521937 ACCAGCCTAACCTAAGTATTGCA 59.478 43.478 0.00 0.00 0.00 4.08
2488 2536 4.166144 ACCAGCCTAACCTAAGTATTGCAT 59.834 41.667 0.00 0.00 0.00 3.96
2489 2537 5.368523 ACCAGCCTAACCTAAGTATTGCATA 59.631 40.000 0.00 0.00 0.00 3.14
2490 2538 6.044404 ACCAGCCTAACCTAAGTATTGCATAT 59.956 38.462 0.00 0.00 0.00 1.78
2491 2539 6.595716 CCAGCCTAACCTAAGTATTGCATATC 59.404 42.308 0.00 0.00 0.00 1.63
2492 2540 7.390027 CAGCCTAACCTAAGTATTGCATATCT 58.610 38.462 0.00 0.00 0.00 1.98
2493 2541 8.531982 CAGCCTAACCTAAGTATTGCATATCTA 58.468 37.037 0.00 0.00 0.00 1.98
2494 2542 8.754080 AGCCTAACCTAAGTATTGCATATCTAG 58.246 37.037 0.00 0.00 0.00 2.43
2495 2543 7.982354 GCCTAACCTAAGTATTGCATATCTAGG 59.018 40.741 0.00 0.00 32.42 3.02
2496 2544 9.036980 CCTAACCTAAGTATTGCATATCTAGGT 57.963 37.037 8.47 8.47 37.03 3.08
2498 2546 8.728596 AACCTAAGTATTGCATATCTAGGTCT 57.271 34.615 12.71 4.61 35.65 3.85
2499 2547 8.728596 ACCTAAGTATTGCATATCTAGGTCTT 57.271 34.615 8.47 0.00 33.40 3.01
2500 2548 9.824216 ACCTAAGTATTGCATATCTAGGTCTTA 57.176 33.333 8.47 0.00 33.40 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 9.184523 CCTTTGTTCCCATGTACTAATAATGAA 57.815 33.333 0.00 0.00 0.00 2.57
6 7 8.333235 ACCTTTGTTCCCATGTACTAATAATGA 58.667 33.333 0.00 0.00 0.00 2.57
7 8 8.519799 ACCTTTGTTCCCATGTACTAATAATG 57.480 34.615 0.00 0.00 0.00 1.90
8 9 9.541884 AAACCTTTGTTCCCATGTACTAATAAT 57.458 29.630 0.00 0.00 32.15 1.28
9 10 8.943594 AAACCTTTGTTCCCATGTACTAATAA 57.056 30.769 0.00 0.00 32.15 1.40
10 11 8.943594 AAAACCTTTGTTCCCATGTACTAATA 57.056 30.769 0.00 0.00 32.15 0.98
11 12 7.039293 GGAAAACCTTTGTTCCCATGTACTAAT 60.039 37.037 0.00 0.00 37.87 1.73
12 13 6.265876 GGAAAACCTTTGTTCCCATGTACTAA 59.734 38.462 0.00 0.00 37.87 2.24
13 14 5.771165 GGAAAACCTTTGTTCCCATGTACTA 59.229 40.000 0.00 0.00 37.87 1.82
14 15 4.587262 GGAAAACCTTTGTTCCCATGTACT 59.413 41.667 0.00 0.00 37.87 2.73
15 16 4.587262 AGGAAAACCTTTGTTCCCATGTAC 59.413 41.667 0.00 0.00 43.78 2.90
16 17 4.810345 AGGAAAACCTTTGTTCCCATGTA 58.190 39.130 0.00 0.00 43.78 2.29
17 18 3.653164 AGGAAAACCTTTGTTCCCATGT 58.347 40.909 0.00 0.00 43.78 3.21
18 19 4.687901 AAGGAAAACCTTTGTTCCCATG 57.312 40.909 0.00 0.00 43.78 3.66
19 20 5.034852 CAAAGGAAAACCTTTGTTCCCAT 57.965 39.130 24.70 0.00 46.58 4.00
20 21 4.479786 CAAAGGAAAACCTTTGTTCCCA 57.520 40.909 24.70 0.00 46.58 4.37
55 56 9.168451 TGTATTCTTTTGACTACTTTGTTGTCA 57.832 29.630 10.00 10.00 43.76 3.58
57 58 9.950680 CATGTATTCTTTTGACTACTTTGTTGT 57.049 29.630 0.00 0.00 36.10 3.32
58 59 8.905702 GCATGTATTCTTTTGACTACTTTGTTG 58.094 33.333 0.00 0.00 36.10 3.33
59 60 8.850156 AGCATGTATTCTTTTGACTACTTTGTT 58.150 29.630 0.00 0.00 36.10 2.83
60 61 8.396272 AGCATGTATTCTTTTGACTACTTTGT 57.604 30.769 0.00 0.00 36.10 2.83
61 62 9.979270 CTAGCATGTATTCTTTTGACTACTTTG 57.021 33.333 0.00 0.00 36.10 2.77
62 63 9.167311 CCTAGCATGTATTCTTTTGACTACTTT 57.833 33.333 0.00 0.00 36.10 2.66
63 64 8.322091 ACCTAGCATGTATTCTTTTGACTACTT 58.678 33.333 0.00 0.00 36.10 2.24
64 65 7.852263 ACCTAGCATGTATTCTTTTGACTACT 58.148 34.615 0.00 0.00 36.10 2.57
65 66 9.595823 TTACCTAGCATGTATTCTTTTGACTAC 57.404 33.333 0.00 0.00 35.80 2.73
67 68 9.167311 CTTTACCTAGCATGTATTCTTTTGACT 57.833 33.333 0.00 0.00 0.00 3.41
68 69 9.162764 TCTTTACCTAGCATGTATTCTTTTGAC 57.837 33.333 0.00 0.00 0.00 3.18
69 70 9.733556 TTCTTTACCTAGCATGTATTCTTTTGA 57.266 29.630 0.00 0.00 0.00 2.69
72 73 9.959721 TCTTTCTTTACCTAGCATGTATTCTTT 57.040 29.630 0.00 0.00 0.00 2.52
73 74 9.959721 TTCTTTCTTTACCTAGCATGTATTCTT 57.040 29.630 0.00 0.00 0.00 2.52
74 75 9.384764 GTTCTTTCTTTACCTAGCATGTATTCT 57.615 33.333 0.00 0.00 0.00 2.40
75 76 9.162764 TGTTCTTTCTTTACCTAGCATGTATTC 57.837 33.333 0.00 0.00 0.00 1.75
76 77 9.515226 TTGTTCTTTCTTTACCTAGCATGTATT 57.485 29.630 0.00 0.00 0.00 1.89
77 78 8.947115 GTTGTTCTTTCTTTACCTAGCATGTAT 58.053 33.333 0.00 0.00 0.00 2.29
78 79 7.389607 GGTTGTTCTTTCTTTACCTAGCATGTA 59.610 37.037 0.00 0.00 0.00 2.29
79 80 6.206829 GGTTGTTCTTTCTTTACCTAGCATGT 59.793 38.462 0.00 0.00 0.00 3.21
80 81 6.206634 TGGTTGTTCTTTCTTTACCTAGCATG 59.793 38.462 0.00 0.00 0.00 4.06
81 82 6.206829 GTGGTTGTTCTTTCTTTACCTAGCAT 59.793 38.462 0.00 0.00 0.00 3.79
82 83 5.529800 GTGGTTGTTCTTTCTTTACCTAGCA 59.470 40.000 0.00 0.00 0.00 3.49
83 84 5.529800 TGTGGTTGTTCTTTCTTTACCTAGC 59.470 40.000 0.00 0.00 0.00 3.42
84 85 6.990349 TCTGTGGTTGTTCTTTCTTTACCTAG 59.010 38.462 0.00 0.00 0.00 3.02
85 86 6.891388 TCTGTGGTTGTTCTTTCTTTACCTA 58.109 36.000 0.00 0.00 0.00 3.08
86 87 5.751586 TCTGTGGTTGTTCTTTCTTTACCT 58.248 37.500 0.00 0.00 0.00 3.08
87 88 6.635030 ATCTGTGGTTGTTCTTTCTTTACC 57.365 37.500 0.00 0.00 0.00 2.85
90 91 8.912988 TCAAATATCTGTGGTTGTTCTTTCTTT 58.087 29.630 0.00 0.00 0.00 2.52
91 92 8.352942 GTCAAATATCTGTGGTTGTTCTTTCTT 58.647 33.333 0.00 0.00 0.00 2.52
92 93 7.502226 TGTCAAATATCTGTGGTTGTTCTTTCT 59.498 33.333 0.00 0.00 0.00 2.52
93 94 7.648142 TGTCAAATATCTGTGGTTGTTCTTTC 58.352 34.615 0.00 0.00 0.00 2.62
94 95 7.581213 TGTCAAATATCTGTGGTTGTTCTTT 57.419 32.000 0.00 0.00 0.00 2.52
95 96 7.581213 TTGTCAAATATCTGTGGTTGTTCTT 57.419 32.000 0.00 0.00 0.00 2.52
96 97 7.425606 GTTTGTCAAATATCTGTGGTTGTTCT 58.574 34.615 0.40 0.00 0.00 3.01
97 98 6.640907 GGTTTGTCAAATATCTGTGGTTGTTC 59.359 38.462 0.40 0.00 0.00 3.18
98 99 6.512297 GGTTTGTCAAATATCTGTGGTTGTT 58.488 36.000 0.40 0.00 0.00 2.83
99 100 5.278266 CGGTTTGTCAAATATCTGTGGTTGT 60.278 40.000 0.40 0.00 0.00 3.32
100 101 5.049060 TCGGTTTGTCAAATATCTGTGGTTG 60.049 40.000 0.40 0.00 0.00 3.77
101 102 5.067273 TCGGTTTGTCAAATATCTGTGGTT 58.933 37.500 0.40 0.00 0.00 3.67
102 103 4.647611 TCGGTTTGTCAAATATCTGTGGT 58.352 39.130 0.40 0.00 0.00 4.16
103 104 4.935205 TCTCGGTTTGTCAAATATCTGTGG 59.065 41.667 0.40 0.00 0.00 4.17
104 105 6.668541 ATCTCGGTTTGTCAAATATCTGTG 57.331 37.500 0.40 0.00 0.00 3.66
105 106 6.878923 TCAATCTCGGTTTGTCAAATATCTGT 59.121 34.615 0.40 0.00 0.00 3.41
106 107 7.307493 TCAATCTCGGTTTGTCAAATATCTG 57.693 36.000 0.40 0.00 0.00 2.90
107 108 8.511604 AATCAATCTCGGTTTGTCAAATATCT 57.488 30.769 0.40 0.00 0.00 1.98
108 109 9.573133 AAAATCAATCTCGGTTTGTCAAATATC 57.427 29.630 0.40 0.00 0.00 1.63
109 110 9.357652 CAAAATCAATCTCGGTTTGTCAAATAT 57.642 29.630 0.40 0.00 0.00 1.28
110 111 8.356657 ACAAAATCAATCTCGGTTTGTCAAATA 58.643 29.630 0.40 0.00 37.78 1.40
111 112 7.209475 ACAAAATCAATCTCGGTTTGTCAAAT 58.791 30.769 0.40 0.00 37.78 2.32
112 113 6.568869 ACAAAATCAATCTCGGTTTGTCAAA 58.431 32.000 0.00 0.00 37.78 2.69
113 114 6.142818 ACAAAATCAATCTCGGTTTGTCAA 57.857 33.333 0.00 0.00 37.78 3.18
114 115 5.766150 ACAAAATCAATCTCGGTTTGTCA 57.234 34.783 0.00 0.00 37.78 3.58
115 116 6.205784 TGAACAAAATCAATCTCGGTTTGTC 58.794 36.000 0.00 0.00 40.53 3.18
116 117 6.142818 TGAACAAAATCAATCTCGGTTTGT 57.857 33.333 0.00 0.00 42.58 2.83
117 118 5.630680 CCTGAACAAAATCAATCTCGGTTTG 59.369 40.000 0.00 0.00 35.72 2.93
118 119 5.534654 TCCTGAACAAAATCAATCTCGGTTT 59.465 36.000 0.00 0.00 0.00 3.27
119 120 5.070001 TCCTGAACAAAATCAATCTCGGTT 58.930 37.500 0.00 0.00 0.00 4.44
120 121 4.651778 TCCTGAACAAAATCAATCTCGGT 58.348 39.130 0.00 0.00 0.00 4.69
121 122 5.220931 GGATCCTGAACAAAATCAATCTCGG 60.221 44.000 3.84 0.00 0.00 4.63
122 123 5.355071 TGGATCCTGAACAAAATCAATCTCG 59.645 40.000 14.23 0.00 0.00 4.04
123 124 6.764308 TGGATCCTGAACAAAATCAATCTC 57.236 37.500 14.23 0.00 0.00 2.75
124 125 6.039047 CGATGGATCCTGAACAAAATCAATCT 59.961 38.462 14.23 0.00 29.81 2.40
125 126 6.038603 TCGATGGATCCTGAACAAAATCAATC 59.961 38.462 14.23 1.69 0.00 2.67
126 127 5.887598 TCGATGGATCCTGAACAAAATCAAT 59.112 36.000 14.23 0.00 0.00 2.57
127 128 5.252547 TCGATGGATCCTGAACAAAATCAA 58.747 37.500 14.23 0.00 0.00 2.57
128 129 4.842574 TCGATGGATCCTGAACAAAATCA 58.157 39.130 14.23 0.00 0.00 2.57
129 130 4.260948 GCTCGATGGATCCTGAACAAAATC 60.261 45.833 14.23 3.89 0.00 2.17
130 131 3.629398 GCTCGATGGATCCTGAACAAAAT 59.371 43.478 14.23 0.00 0.00 1.82
131 132 3.009723 GCTCGATGGATCCTGAACAAAA 58.990 45.455 14.23 0.00 0.00 2.44
132 133 2.027285 TGCTCGATGGATCCTGAACAAA 60.027 45.455 14.23 0.00 0.00 2.83
133 134 1.554617 TGCTCGATGGATCCTGAACAA 59.445 47.619 14.23 0.00 0.00 2.83
134 135 1.137675 CTGCTCGATGGATCCTGAACA 59.862 52.381 14.23 8.89 0.00 3.18
135 136 1.410517 TCTGCTCGATGGATCCTGAAC 59.589 52.381 14.23 4.65 0.00 3.18
136 137 1.780503 TCTGCTCGATGGATCCTGAA 58.219 50.000 14.23 0.00 0.00 3.02
137 138 1.410517 GTTCTGCTCGATGGATCCTGA 59.589 52.381 14.23 7.48 0.00 3.86
138 139 1.411977 AGTTCTGCTCGATGGATCCTG 59.588 52.381 14.23 2.99 0.00 3.86
139 140 1.786937 AGTTCTGCTCGATGGATCCT 58.213 50.000 14.23 0.00 0.00 3.24
140 141 2.102252 AGAAGTTCTGCTCGATGGATCC 59.898 50.000 4.20 4.20 0.00 3.36
141 142 3.122297 CAGAAGTTCTGCTCGATGGATC 58.878 50.000 19.55 0.00 37.72 3.36
142 143 2.158986 CCAGAAGTTCTGCTCGATGGAT 60.159 50.000 24.85 0.00 42.98 3.41
143 144 1.205655 CCAGAAGTTCTGCTCGATGGA 59.794 52.381 24.85 0.00 42.98 3.41
144 145 1.649664 CCAGAAGTTCTGCTCGATGG 58.350 55.000 24.85 8.79 42.98 3.51
145 146 1.205655 TCCCAGAAGTTCTGCTCGATG 59.794 52.381 24.85 11.55 42.98 3.84
146 147 1.480137 CTCCCAGAAGTTCTGCTCGAT 59.520 52.381 24.85 0.00 42.98 3.59
147 148 0.891373 CTCCCAGAAGTTCTGCTCGA 59.109 55.000 24.85 17.68 42.98 4.04
148 149 0.891373 TCTCCCAGAAGTTCTGCTCG 59.109 55.000 24.85 14.83 42.98 5.03
149 150 2.175202 TCTCTCCCAGAAGTTCTGCTC 58.825 52.381 24.85 0.00 42.98 4.26
150 151 2.301583 GTTCTCTCCCAGAAGTTCTGCT 59.698 50.000 24.85 0.00 42.13 4.24
151 152 2.301583 AGTTCTCTCCCAGAAGTTCTGC 59.698 50.000 24.85 10.37 41.41 4.26
152 153 3.306641 CCAGTTCTCTCCCAGAAGTTCTG 60.307 52.174 23.58 23.58 41.41 3.02
153 154 2.903135 CCAGTTCTCTCCCAGAAGTTCT 59.097 50.000 0.00 0.00 41.41 3.01
154 155 2.614229 GCCAGTTCTCTCCCAGAAGTTC 60.614 54.545 0.00 0.00 41.41 3.01
155 156 1.349357 GCCAGTTCTCTCCCAGAAGTT 59.651 52.381 0.00 0.00 41.41 2.66
156 157 0.980423 GCCAGTTCTCTCCCAGAAGT 59.020 55.000 0.00 0.00 44.54 3.01
157 158 0.108424 CGCCAGTTCTCTCCCAGAAG 60.108 60.000 0.00 0.00 42.13 2.85
158 159 1.975327 CGCCAGTTCTCTCCCAGAA 59.025 57.895 0.00 0.00 38.95 3.02
159 160 2.650116 GCGCCAGTTCTCTCCCAGA 61.650 63.158 0.00 0.00 0.00 3.86
160 161 2.125350 GCGCCAGTTCTCTCCCAG 60.125 66.667 0.00 0.00 0.00 4.45
161 162 4.069232 CGCGCCAGTTCTCTCCCA 62.069 66.667 0.00 0.00 0.00 4.37
162 163 4.821589 CCGCGCCAGTTCTCTCCC 62.822 72.222 0.00 0.00 0.00 4.30
163 164 4.070552 ACCGCGCCAGTTCTCTCC 62.071 66.667 0.00 0.00 0.00 3.71
164 165 2.811317 CACCGCGCCAGTTCTCTC 60.811 66.667 0.00 0.00 0.00 3.20
165 166 1.812686 TAACACCGCGCCAGTTCTCT 61.813 55.000 0.00 0.00 0.00 3.10
166 167 1.373748 TAACACCGCGCCAGTTCTC 60.374 57.895 0.00 0.00 0.00 2.87
167 168 1.666872 GTAACACCGCGCCAGTTCT 60.667 57.895 0.00 0.00 0.00 3.01
168 169 1.226030 AAGTAACACCGCGCCAGTTC 61.226 55.000 0.00 0.00 0.00 3.01
169 170 0.816421 AAAGTAACACCGCGCCAGTT 60.816 50.000 0.00 7.46 0.00 3.16
170 171 0.816421 AAAAGTAACACCGCGCCAGT 60.816 50.000 0.00 0.00 0.00 4.00
171 172 0.385473 CAAAAGTAACACCGCGCCAG 60.385 55.000 0.00 0.00 0.00 4.85
172 173 0.814410 TCAAAAGTAACACCGCGCCA 60.814 50.000 0.00 0.00 0.00 5.69
173 174 0.519961 ATCAAAAGTAACACCGCGCC 59.480 50.000 0.00 0.00 0.00 6.53
174 175 1.976045 CAATCAAAAGTAACACCGCGC 59.024 47.619 0.00 0.00 0.00 6.86
175 176 1.976045 GCAATCAAAAGTAACACCGCG 59.024 47.619 0.00 0.00 0.00 6.46
176 177 3.282831 AGCAATCAAAAGTAACACCGC 57.717 42.857 0.00 0.00 0.00 5.68
177 178 5.856126 TCTAGCAATCAAAAGTAACACCG 57.144 39.130 0.00 0.00 0.00 4.94
178 179 7.617041 AGATCTAGCAATCAAAAGTAACACC 57.383 36.000 0.00 0.00 0.00 4.16
179 180 8.507249 ACAAGATCTAGCAATCAAAAGTAACAC 58.493 33.333 0.00 0.00 0.00 3.32
180 181 8.506437 CACAAGATCTAGCAATCAAAAGTAACA 58.494 33.333 0.00 0.00 0.00 2.41
181 182 8.507249 ACACAAGATCTAGCAATCAAAAGTAAC 58.493 33.333 0.00 0.00 0.00 2.50
182 183 8.621532 ACACAAGATCTAGCAATCAAAAGTAA 57.378 30.769 0.00 0.00 0.00 2.24
183 184 8.621532 AACACAAGATCTAGCAATCAAAAGTA 57.378 30.769 0.00 0.00 0.00 2.24
184 185 7.446625 AGAACACAAGATCTAGCAATCAAAAGT 59.553 33.333 0.00 0.00 0.00 2.66
185 186 7.814642 AGAACACAAGATCTAGCAATCAAAAG 58.185 34.615 0.00 0.00 0.00 2.27
186 187 7.750229 AGAACACAAGATCTAGCAATCAAAA 57.250 32.000 0.00 0.00 0.00 2.44
187 188 7.308770 CCAAGAACACAAGATCTAGCAATCAAA 60.309 37.037 0.00 0.00 0.00 2.69
188 189 6.149973 CCAAGAACACAAGATCTAGCAATCAA 59.850 38.462 0.00 0.00 0.00 2.57
189 190 5.645067 CCAAGAACACAAGATCTAGCAATCA 59.355 40.000 0.00 0.00 0.00 2.57
190 191 5.877012 TCCAAGAACACAAGATCTAGCAATC 59.123 40.000 0.00 0.00 0.00 2.67
191 192 5.809001 TCCAAGAACACAAGATCTAGCAAT 58.191 37.500 0.00 0.00 0.00 3.56
192 193 5.012046 TCTCCAAGAACACAAGATCTAGCAA 59.988 40.000 0.00 0.00 0.00 3.91
193 194 4.528206 TCTCCAAGAACACAAGATCTAGCA 59.472 41.667 0.00 0.00 0.00 3.49
194 195 5.078411 TCTCCAAGAACACAAGATCTAGC 57.922 43.478 0.00 0.00 0.00 3.42
195 196 6.279513 ACTCTCCAAGAACACAAGATCTAG 57.720 41.667 0.00 0.00 0.00 2.43
196 197 7.093727 CCTTACTCTCCAAGAACACAAGATCTA 60.094 40.741 0.00 0.00 0.00 1.98
197 198 6.295575 CCTTACTCTCCAAGAACACAAGATCT 60.296 42.308 0.00 0.00 0.00 2.75
198 199 5.872070 CCTTACTCTCCAAGAACACAAGATC 59.128 44.000 0.00 0.00 0.00 2.75
199 200 5.544176 TCCTTACTCTCCAAGAACACAAGAT 59.456 40.000 0.00 0.00 0.00 2.40
200 201 4.899457 TCCTTACTCTCCAAGAACACAAGA 59.101 41.667 0.00 0.00 0.00 3.02
201 202 5.215252 TCCTTACTCTCCAAGAACACAAG 57.785 43.478 0.00 0.00 0.00 3.16
202 203 4.654262 ACTCCTTACTCTCCAAGAACACAA 59.346 41.667 0.00 0.00 0.00 3.33
203 204 4.223953 ACTCCTTACTCTCCAAGAACACA 58.776 43.478 0.00 0.00 0.00 3.72
204 205 4.875561 ACTCCTTACTCTCCAAGAACAC 57.124 45.455 0.00 0.00 0.00 3.32
205 206 4.463186 GCTACTCCTTACTCTCCAAGAACA 59.537 45.833 0.00 0.00 0.00 3.18
206 207 4.142116 GGCTACTCCTTACTCTCCAAGAAC 60.142 50.000 0.00 0.00 0.00 3.01
207 208 4.024670 GGCTACTCCTTACTCTCCAAGAA 58.975 47.826 0.00 0.00 0.00 2.52
208 209 3.633418 GGCTACTCCTTACTCTCCAAGA 58.367 50.000 0.00 0.00 0.00 3.02
209 210 2.359531 CGGCTACTCCTTACTCTCCAAG 59.640 54.545 0.00 0.00 0.00 3.61
210 211 2.376109 CGGCTACTCCTTACTCTCCAA 58.624 52.381 0.00 0.00 0.00 3.53
211 212 1.409802 CCGGCTACTCCTTACTCTCCA 60.410 57.143 0.00 0.00 0.00 3.86
212 213 1.320507 CCGGCTACTCCTTACTCTCC 58.679 60.000 0.00 0.00 0.00 3.71
213 214 0.669619 GCCGGCTACTCCTTACTCTC 59.330 60.000 22.15 0.00 0.00 3.20
214 215 1.102222 CGCCGGCTACTCCTTACTCT 61.102 60.000 26.68 0.00 0.00 3.24
215 216 1.359475 CGCCGGCTACTCCTTACTC 59.641 63.158 26.68 0.00 0.00 2.59
216 217 0.107017 TACGCCGGCTACTCCTTACT 60.107 55.000 26.68 0.00 0.00 2.24
217 218 0.957362 ATACGCCGGCTACTCCTTAC 59.043 55.000 26.68 0.00 0.00 2.34
218 219 1.338973 CAATACGCCGGCTACTCCTTA 59.661 52.381 26.68 4.22 0.00 2.69
219 220 0.104304 CAATACGCCGGCTACTCCTT 59.896 55.000 26.68 6.30 0.00 3.36
220 221 1.740285 CAATACGCCGGCTACTCCT 59.260 57.895 26.68 0.24 0.00 3.69
221 222 1.300697 CCAATACGCCGGCTACTCC 60.301 63.158 26.68 0.00 0.00 3.85
222 223 0.318784 CTCCAATACGCCGGCTACTC 60.319 60.000 26.68 0.00 0.00 2.59
223 224 0.754217 TCTCCAATACGCCGGCTACT 60.754 55.000 26.68 9.23 0.00 2.57
224 225 0.103572 TTCTCCAATACGCCGGCTAC 59.896 55.000 26.68 0.00 0.00 3.58
225 226 0.387929 CTTCTCCAATACGCCGGCTA 59.612 55.000 26.68 16.11 0.00 3.93
226 227 1.144057 CTTCTCCAATACGCCGGCT 59.856 57.895 26.68 14.27 0.00 5.52
227 228 0.461339 TTCTTCTCCAATACGCCGGC 60.461 55.000 19.07 19.07 0.00 6.13
228 229 1.134788 AGTTCTTCTCCAATACGCCGG 60.135 52.381 0.00 0.00 0.00 6.13
229 230 2.295253 AGTTCTTCTCCAATACGCCG 57.705 50.000 0.00 0.00 0.00 6.46
230 231 4.650754 TCTAGTTCTTCTCCAATACGCC 57.349 45.455 0.00 0.00 0.00 5.68
231 232 6.183360 GGTTTTCTAGTTCTTCTCCAATACGC 60.183 42.308 0.00 0.00 0.00 4.42
232 233 7.097834 AGGTTTTCTAGTTCTTCTCCAATACG 58.902 38.462 0.00 0.00 0.00 3.06
233 234 9.589111 CTAGGTTTTCTAGTTCTTCTCCAATAC 57.411 37.037 0.00 0.00 40.37 1.89
234 235 9.543231 TCTAGGTTTTCTAGTTCTTCTCCAATA 57.457 33.333 0.00 0.00 44.45 1.90
235 236 8.437274 TCTAGGTTTTCTAGTTCTTCTCCAAT 57.563 34.615 0.00 0.00 44.45 3.16
236 237 7.850935 TCTAGGTTTTCTAGTTCTTCTCCAA 57.149 36.000 0.00 0.00 44.45 3.53
237 238 8.968969 GTATCTAGGTTTTCTAGTTCTTCTCCA 58.031 37.037 0.00 0.00 44.45 3.86
238 239 8.968969 TGTATCTAGGTTTTCTAGTTCTTCTCC 58.031 37.037 0.00 0.00 44.45 3.71
254 255 9.408648 CCAGTTTTCCAAATTATGTATCTAGGT 57.591 33.333 0.00 0.00 0.00 3.08
255 256 8.850156 CCCAGTTTTCCAAATTATGTATCTAGG 58.150 37.037 0.00 0.00 0.00 3.02
256 257 8.850156 CCCCAGTTTTCCAAATTATGTATCTAG 58.150 37.037 0.00 0.00 0.00 2.43
257 258 8.561769 TCCCCAGTTTTCCAAATTATGTATCTA 58.438 33.333 0.00 0.00 0.00 1.98
258 259 7.418378 TCCCCAGTTTTCCAAATTATGTATCT 58.582 34.615 0.00 0.00 0.00 1.98
259 260 7.559897 TCTCCCCAGTTTTCCAAATTATGTATC 59.440 37.037 0.00 0.00 0.00 2.24
260 261 7.418378 TCTCCCCAGTTTTCCAAATTATGTAT 58.582 34.615 0.00 0.00 0.00 2.29
261 262 6.795590 TCTCCCCAGTTTTCCAAATTATGTA 58.204 36.000 0.00 0.00 0.00 2.29
262 263 5.650283 TCTCCCCAGTTTTCCAAATTATGT 58.350 37.500 0.00 0.00 0.00 2.29
263 264 5.951747 TCTCTCCCCAGTTTTCCAAATTATG 59.048 40.000 0.00 0.00 0.00 1.90
264 265 6.152638 TCTCTCCCCAGTTTTCCAAATTAT 57.847 37.500 0.00 0.00 0.00 1.28
265 266 5.592587 TCTCTCCCCAGTTTTCCAAATTA 57.407 39.130 0.00 0.00 0.00 1.40
266 267 4.469469 TCTCTCCCCAGTTTTCCAAATT 57.531 40.909 0.00 0.00 0.00 1.82
267 268 4.469469 TTCTCTCCCCAGTTTTCCAAAT 57.531 40.909 0.00 0.00 0.00 2.32
268 269 3.963476 TTCTCTCCCCAGTTTTCCAAA 57.037 42.857 0.00 0.00 0.00 3.28
269 270 3.461831 TCTTTCTCTCCCCAGTTTTCCAA 59.538 43.478 0.00 0.00 0.00 3.53
270 271 3.053077 TCTTTCTCTCCCCAGTTTTCCA 58.947 45.455 0.00 0.00 0.00 3.53
271 272 3.790089 TCTTTCTCTCCCCAGTTTTCC 57.210 47.619 0.00 0.00 0.00 3.13
272 273 3.935828 CGATCTTTCTCTCCCCAGTTTTC 59.064 47.826 0.00 0.00 0.00 2.29
273 274 3.583086 TCGATCTTTCTCTCCCCAGTTTT 59.417 43.478 0.00 0.00 0.00 2.43
274 275 3.173965 TCGATCTTTCTCTCCCCAGTTT 58.826 45.455 0.00 0.00 0.00 2.66
275 276 2.763448 CTCGATCTTTCTCTCCCCAGTT 59.237 50.000 0.00 0.00 0.00 3.16
276 277 2.383855 CTCGATCTTTCTCTCCCCAGT 58.616 52.381 0.00 0.00 0.00 4.00
277 278 1.068434 GCTCGATCTTTCTCTCCCCAG 59.932 57.143 0.00 0.00 0.00 4.45
278 279 1.115467 GCTCGATCTTTCTCTCCCCA 58.885 55.000 0.00 0.00 0.00 4.96
279 280 0.031449 CGCTCGATCTTTCTCTCCCC 59.969 60.000 0.00 0.00 0.00 4.81
280 281 0.741915 ACGCTCGATCTTTCTCTCCC 59.258 55.000 0.00 0.00 0.00 4.30
281 282 2.570442 AACGCTCGATCTTTCTCTCC 57.430 50.000 0.00 0.00 0.00 3.71
282 283 3.246619 ACAAACGCTCGATCTTTCTCTC 58.753 45.455 0.00 0.00 0.00 3.20
283 284 3.305398 ACAAACGCTCGATCTTTCTCT 57.695 42.857 0.00 0.00 0.00 3.10
284 285 4.391140 AAACAAACGCTCGATCTTTCTC 57.609 40.909 0.00 0.00 0.00 2.87
285 286 4.511826 AGAAAACAAACGCTCGATCTTTCT 59.488 37.500 0.00 0.00 0.00 2.52
286 287 4.608882 CAGAAAACAAACGCTCGATCTTTC 59.391 41.667 0.00 0.00 0.00 2.62
287 288 4.035208 ACAGAAAACAAACGCTCGATCTTT 59.965 37.500 0.00 0.00 0.00 2.52
288 289 3.560068 ACAGAAAACAAACGCTCGATCTT 59.440 39.130 0.00 0.00 0.00 2.40
289 290 3.059597 CACAGAAAACAAACGCTCGATCT 60.060 43.478 0.00 0.00 0.00 2.75
290 291 3.218398 CACAGAAAACAAACGCTCGATC 58.782 45.455 0.00 0.00 0.00 3.69
291 292 2.602217 GCACAGAAAACAAACGCTCGAT 60.602 45.455 0.00 0.00 0.00 3.59
292 293 1.267832 GCACAGAAAACAAACGCTCGA 60.268 47.619 0.00 0.00 0.00 4.04
293 294 1.112459 GCACAGAAAACAAACGCTCG 58.888 50.000 0.00 0.00 0.00 5.03
294 295 1.112459 CGCACAGAAAACAAACGCTC 58.888 50.000 0.00 0.00 0.00 5.03
295 296 0.730265 TCGCACAGAAAACAAACGCT 59.270 45.000 0.00 0.00 0.00 5.07
296 297 1.112459 CTCGCACAGAAAACAAACGC 58.888 50.000 0.00 0.00 0.00 4.84
297 298 2.730183 TCTCGCACAGAAAACAAACG 57.270 45.000 0.00 0.00 0.00 3.60
313 314 0.672342 TATAGCCGCCGAGGTTTCTC 59.328 55.000 0.00 0.00 43.70 2.87
314 315 0.388294 GTATAGCCGCCGAGGTTTCT 59.612 55.000 0.00 0.00 43.70 2.52
315 316 0.938168 CGTATAGCCGCCGAGGTTTC 60.938 60.000 0.00 0.00 43.70 2.78
316 317 1.066918 CGTATAGCCGCCGAGGTTT 59.933 57.895 0.00 0.00 43.70 3.27
317 318 1.177256 ATCGTATAGCCGCCGAGGTT 61.177 55.000 0.00 0.00 43.70 3.50
318 319 1.602888 ATCGTATAGCCGCCGAGGT 60.603 57.895 0.00 0.00 43.70 3.85
319 320 1.154016 CATCGTATAGCCGCCGAGG 60.154 63.158 0.00 0.00 44.97 4.63
320 321 1.801913 GCATCGTATAGCCGCCGAG 60.802 63.158 0.00 0.00 33.66 4.63
321 322 1.873270 ATGCATCGTATAGCCGCCGA 61.873 55.000 0.00 0.00 34.79 5.54
322 323 1.413767 GATGCATCGTATAGCCGCCG 61.414 60.000 11.68 0.00 0.00 6.46
323 324 0.389817 TGATGCATCGTATAGCCGCC 60.390 55.000 21.34 0.00 0.00 6.13
324 325 0.994995 CTGATGCATCGTATAGCCGC 59.005 55.000 21.34 0.00 0.00 6.53
325 326 2.636768 TCTGATGCATCGTATAGCCG 57.363 50.000 21.34 3.11 0.00 5.52
326 327 3.111838 CGATCTGATGCATCGTATAGCC 58.888 50.000 21.34 7.74 38.67 3.93
327 328 2.533535 GCGATCTGATGCATCGTATAGC 59.466 50.000 21.34 21.49 44.17 2.97
328 329 4.026293 AGCGATCTGATGCATCGTATAG 57.974 45.455 21.34 16.72 44.17 1.31
329 330 5.332707 GTTAGCGATCTGATGCATCGTATA 58.667 41.667 21.34 7.31 44.17 1.47
330 331 4.169508 GTTAGCGATCTGATGCATCGTAT 58.830 43.478 21.34 16.38 44.17 3.06
331 332 3.565516 GTTAGCGATCTGATGCATCGTA 58.434 45.455 21.34 12.30 44.17 3.43
332 333 2.398498 GTTAGCGATCTGATGCATCGT 58.602 47.619 21.34 10.22 44.17 3.73
333 334 1.723542 GGTTAGCGATCTGATGCATCG 59.276 52.381 21.34 15.63 44.94 3.84
334 335 3.037431 AGGTTAGCGATCTGATGCATC 57.963 47.619 20.14 20.14 0.00 3.91
335 336 3.829026 TCTAGGTTAGCGATCTGATGCAT 59.171 43.478 0.00 0.00 0.00 3.96
336 337 3.004839 GTCTAGGTTAGCGATCTGATGCA 59.995 47.826 12.37 0.00 0.00 3.96
337 338 3.570559 GTCTAGGTTAGCGATCTGATGC 58.429 50.000 0.00 0.00 0.00 3.91
338 339 3.816091 CGTCTAGGTTAGCGATCTGATG 58.184 50.000 0.00 0.00 0.00 3.07
339 340 2.226912 GCGTCTAGGTTAGCGATCTGAT 59.773 50.000 0.00 0.00 0.00 2.90
340 341 1.602851 GCGTCTAGGTTAGCGATCTGA 59.397 52.381 0.00 0.00 0.00 3.27
341 342 1.604755 AGCGTCTAGGTTAGCGATCTG 59.395 52.381 0.00 0.00 34.34 2.90
342 343 1.970092 AGCGTCTAGGTTAGCGATCT 58.030 50.000 0.00 0.00 34.34 2.75
343 344 2.778187 AAGCGTCTAGGTTAGCGATC 57.222 50.000 0.00 0.00 39.03 3.69
344 345 2.223758 GGAAAGCGTCTAGGTTAGCGAT 60.224 50.000 0.00 0.00 40.06 4.58
345 346 1.133790 GGAAAGCGTCTAGGTTAGCGA 59.866 52.381 0.00 0.00 40.06 4.93
346 347 1.134560 AGGAAAGCGTCTAGGTTAGCG 59.865 52.381 0.00 0.00 40.06 4.26
347 348 2.963548 AGGAAAGCGTCTAGGTTAGC 57.036 50.000 0.00 0.00 40.06 3.09
348 349 4.630505 GGAAAAGGAAAGCGTCTAGGTTAG 59.369 45.833 0.00 0.00 40.06 2.34
349 350 4.564199 GGGAAAAGGAAAGCGTCTAGGTTA 60.564 45.833 0.00 0.00 40.06 2.85
350 351 3.409570 GGAAAAGGAAAGCGTCTAGGTT 58.590 45.455 0.00 0.00 43.26 3.50
351 352 2.290134 GGGAAAAGGAAAGCGTCTAGGT 60.290 50.000 0.00 0.00 0.00 3.08
352 353 2.357075 GGGAAAAGGAAAGCGTCTAGG 58.643 52.381 0.00 0.00 0.00 3.02
353 354 2.000447 CGGGAAAAGGAAAGCGTCTAG 59.000 52.381 0.00 0.00 0.00 2.43
354 355 1.619827 TCGGGAAAAGGAAAGCGTCTA 59.380 47.619 0.00 0.00 0.00 2.59
355 356 0.395312 TCGGGAAAAGGAAAGCGTCT 59.605 50.000 0.00 0.00 0.00 4.18
356 357 0.796927 CTCGGGAAAAGGAAAGCGTC 59.203 55.000 0.00 0.00 0.00 5.19
357 358 0.108019 ACTCGGGAAAAGGAAAGCGT 59.892 50.000 0.00 0.00 0.00 5.07
358 359 1.235724 AACTCGGGAAAAGGAAAGCG 58.764 50.000 0.00 0.00 0.00 4.68
359 360 3.057736 GGTTAACTCGGGAAAAGGAAAGC 60.058 47.826 5.42 0.00 0.00 3.51
360 361 4.139038 TGGTTAACTCGGGAAAAGGAAAG 58.861 43.478 5.42 0.00 0.00 2.62
361 362 4.139038 CTGGTTAACTCGGGAAAAGGAAA 58.861 43.478 5.42 0.00 0.00 3.13
362 363 3.497227 CCTGGTTAACTCGGGAAAAGGAA 60.497 47.826 13.79 0.00 32.49 3.36
363 364 2.039348 CCTGGTTAACTCGGGAAAAGGA 59.961 50.000 13.79 0.00 32.49 3.36
364 365 2.433436 CCTGGTTAACTCGGGAAAAGG 58.567 52.381 13.79 2.83 32.49 3.11
365 366 1.810755 GCCTGGTTAACTCGGGAAAAG 59.189 52.381 20.15 2.33 32.49 2.27
366 367 1.546099 GGCCTGGTTAACTCGGGAAAA 60.546 52.381 20.15 0.00 32.49 2.29
367 368 0.037160 GGCCTGGTTAACTCGGGAAA 59.963 55.000 20.15 0.00 32.49 3.13
368 369 1.681076 GGCCTGGTTAACTCGGGAA 59.319 57.895 20.15 0.00 32.49 3.97
369 370 2.652095 CGGCCTGGTTAACTCGGGA 61.652 63.158 20.15 0.00 32.49 5.14
370 371 1.968050 ATCGGCCTGGTTAACTCGGG 61.968 60.000 14.40 14.40 0.00 5.14
371 372 0.810031 CATCGGCCTGGTTAACTCGG 60.810 60.000 5.42 7.39 0.00 4.63
372 373 0.810031 CCATCGGCCTGGTTAACTCG 60.810 60.000 5.42 3.09 0.00 4.18
373 374 0.539986 TCCATCGGCCTGGTTAACTC 59.460 55.000 10.68 0.00 37.57 3.01
374 375 0.252197 GTCCATCGGCCTGGTTAACT 59.748 55.000 10.68 0.00 37.57 2.24
375 376 0.035820 TGTCCATCGGCCTGGTTAAC 60.036 55.000 10.68 0.00 37.57 2.01
376 377 0.916086 ATGTCCATCGGCCTGGTTAA 59.084 50.000 10.68 0.00 37.57 2.01
377 378 0.180171 CATGTCCATCGGCCTGGTTA 59.820 55.000 10.68 2.31 37.57 2.85
378 379 1.077501 CATGTCCATCGGCCTGGTT 60.078 57.895 10.68 0.00 37.57 3.67
379 380 1.561769 TTCATGTCCATCGGCCTGGT 61.562 55.000 10.68 0.00 37.57 4.00
380 381 0.394216 TTTCATGTCCATCGGCCTGG 60.394 55.000 4.59 4.59 37.66 4.45
381 382 1.462616 TTTTCATGTCCATCGGCCTG 58.537 50.000 0.00 0.00 0.00 4.85
382 383 2.442236 ATTTTCATGTCCATCGGCCT 57.558 45.000 0.00 0.00 0.00 5.19
383 384 3.214328 ACTATTTTCATGTCCATCGGCC 58.786 45.455 0.00 0.00 0.00 6.13
384 385 5.050091 CAGTACTATTTTCATGTCCATCGGC 60.050 44.000 0.00 0.00 0.00 5.54
385 386 5.466728 CCAGTACTATTTTCATGTCCATCGG 59.533 44.000 0.00 0.00 0.00 4.18
386 387 6.049149 ACCAGTACTATTTTCATGTCCATCG 58.951 40.000 0.00 0.00 0.00 3.84
387 388 7.047891 TGACCAGTACTATTTTCATGTCCATC 58.952 38.462 0.00 0.00 0.00 3.51
388 389 6.957631 TGACCAGTACTATTTTCATGTCCAT 58.042 36.000 0.00 0.00 0.00 3.41
389 390 6.367374 TGACCAGTACTATTTTCATGTCCA 57.633 37.500 0.00 0.00 0.00 4.02
390 391 5.817816 CCTGACCAGTACTATTTTCATGTCC 59.182 44.000 0.00 0.00 0.00 4.02
391 392 6.407202 ACCTGACCAGTACTATTTTCATGTC 58.593 40.000 0.00 0.00 0.00 3.06
392 393 6.374417 ACCTGACCAGTACTATTTTCATGT 57.626 37.500 0.00 0.00 0.00 3.21
393 394 8.258007 TCTTACCTGACCAGTACTATTTTCATG 58.742 37.037 0.00 0.00 0.00 3.07
394 395 8.375493 TCTTACCTGACCAGTACTATTTTCAT 57.625 34.615 0.00 0.00 0.00 2.57
395 396 7.786046 TCTTACCTGACCAGTACTATTTTCA 57.214 36.000 0.00 0.00 0.00 2.69
398 399 8.422566 GCTATTCTTACCTGACCAGTACTATTT 58.577 37.037 0.00 0.00 0.00 1.40
399 400 7.015389 GGCTATTCTTACCTGACCAGTACTATT 59.985 40.741 0.00 0.00 0.00 1.73
400 401 6.494146 GGCTATTCTTACCTGACCAGTACTAT 59.506 42.308 0.00 0.00 0.00 2.12
401 402 5.832060 GGCTATTCTTACCTGACCAGTACTA 59.168 44.000 0.00 0.00 0.00 1.82
402 403 4.650131 GGCTATTCTTACCTGACCAGTACT 59.350 45.833 0.00 0.00 0.00 2.73
403 404 4.650131 AGGCTATTCTTACCTGACCAGTAC 59.350 45.833 0.00 0.00 30.82 2.73
404 405 4.880164 AGGCTATTCTTACCTGACCAGTA 58.120 43.478 0.00 0.00 30.82 2.74
405 406 3.725634 AGGCTATTCTTACCTGACCAGT 58.274 45.455 0.00 0.00 30.82 4.00
406 407 5.871396 TTAGGCTATTCTTACCTGACCAG 57.129 43.478 0.00 0.00 34.92 4.00
407 408 5.130477 CCTTTAGGCTATTCTTACCTGACCA 59.870 44.000 0.00 0.00 34.92 4.02
408 409 5.365895 TCCTTTAGGCTATTCTTACCTGACC 59.634 44.000 0.00 0.00 34.92 4.02
409 410 6.098552 AGTCCTTTAGGCTATTCTTACCTGAC 59.901 42.308 0.00 0.00 34.92 3.51
410 411 6.203072 AGTCCTTTAGGCTATTCTTACCTGA 58.797 40.000 0.00 0.00 34.92 3.86
411 412 6.487299 AGTCCTTTAGGCTATTCTTACCTG 57.513 41.667 0.00 0.00 34.92 4.00
412 413 8.619683 TTTAGTCCTTTAGGCTATTCTTACCT 57.380 34.615 0.00 0.00 37.61 3.08
424 425 6.565999 CGAACAAACTGCTTTAGTCCTTTAGG 60.566 42.308 0.00 0.00 39.18 2.69
490 528 8.391075 TCCAAGAATCACAAGGTTAGTTTTAG 57.609 34.615 0.00 0.00 0.00 1.85
491 529 8.754991 TTCCAAGAATCACAAGGTTAGTTTTA 57.245 30.769 0.00 0.00 0.00 1.52
492 530 7.654022 TTCCAAGAATCACAAGGTTAGTTTT 57.346 32.000 0.00 0.00 0.00 2.43
572 610 1.643832 GAAGATGTCGATTGCGCCC 59.356 57.895 4.18 0.00 37.46 6.13
1152 1190 4.803426 CACGTCCTGCTCGCCCTC 62.803 72.222 0.00 0.00 0.00 4.30
1467 1505 1.532316 CATGGCCATGACATCCCCC 60.532 63.158 37.84 0.00 41.20 5.40
1499 1537 2.347490 CCCCACTGCTACAGCGTT 59.653 61.111 0.00 0.00 45.83 4.84
1530 1568 4.582701 AGCACCTGATTAGAAGATCGAG 57.417 45.455 0.00 0.00 0.00 4.04
1582 1620 4.443913 TTTTACGGCTCCAATTAAAGGC 57.556 40.909 3.47 3.47 34.90 4.35
1623 1661 2.358898 GGTCAATCATCAATCCCCGTTG 59.641 50.000 0.00 0.00 0.00 4.10
1626 1664 2.346766 TGGTCAATCATCAATCCCCG 57.653 50.000 0.00 0.00 0.00 5.73
1651 1689 1.821136 TGCAAACACCAATCACACACA 59.179 42.857 0.00 0.00 0.00 3.72
1652 1690 2.575694 TGCAAACACCAATCACACAC 57.424 45.000 0.00 0.00 0.00 3.82
1711 1749 1.816679 GGTTAACGGGTCGCATCCC 60.817 63.158 0.00 3.35 43.78 3.85
1723 1761 5.404667 CGAAGAAACCACTCACTAGGTTAAC 59.595 44.000 0.00 0.00 46.92 2.01
1736 1774 4.904154 CGATTGAAGTTTCGAAGAAACCAC 59.096 41.667 18.51 14.02 45.90 4.16
1817 1855 2.081526 CGAGGACGTGCTCAATTGG 58.918 57.895 32.29 14.99 34.56 3.16
1848 1886 0.370273 CTTGGAAGTCGTATGTGCGC 59.630 55.000 0.00 0.00 0.00 6.09
1855 1893 1.825090 TAGTCGCCTTGGAAGTCGTA 58.175 50.000 0.00 0.00 0.00 3.43
1862 1900 1.202371 CGCTAACATAGTCGCCTTGGA 60.202 52.381 0.00 0.00 0.00 3.53
1867 1905 1.217882 AATGCGCTAACATAGTCGCC 58.782 50.000 9.73 6.37 44.61 5.54
1891 1929 4.537015 GATGTGCTTTAGCGAAAACTGTT 58.463 39.130 0.00 0.00 45.83 3.16
1892 1930 3.363970 CGATGTGCTTTAGCGAAAACTGT 60.364 43.478 0.00 0.00 45.83 3.55
1893 1931 3.120683 TCGATGTGCTTTAGCGAAAACTG 60.121 43.478 0.00 0.00 45.83 3.16
1894 1932 3.064207 TCGATGTGCTTTAGCGAAAACT 58.936 40.909 0.00 0.00 45.83 2.66
1895 1933 3.122948 TCTCGATGTGCTTTAGCGAAAAC 59.877 43.478 0.00 0.00 45.83 2.43
1896 1934 3.122948 GTCTCGATGTGCTTTAGCGAAAA 59.877 43.478 0.00 0.00 45.83 2.29
1897 1935 2.666508 GTCTCGATGTGCTTTAGCGAAA 59.333 45.455 0.00 0.00 45.83 3.46
1898 1936 2.259618 GTCTCGATGTGCTTTAGCGAA 58.740 47.619 0.00 0.00 45.83 4.70
1899 1937 1.794076 CGTCTCGATGTGCTTTAGCGA 60.794 52.381 0.00 0.00 45.83 4.93
1900 1938 0.567968 CGTCTCGATGTGCTTTAGCG 59.432 55.000 0.00 0.00 45.83 4.26
1901 1939 1.321743 CACGTCTCGATGTGCTTTAGC 59.678 52.381 6.35 0.00 40.88 3.09
1902 1940 2.594654 GTCACGTCTCGATGTGCTTTAG 59.405 50.000 13.12 0.00 45.44 1.85
1903 1941 2.030628 TGTCACGTCTCGATGTGCTTTA 60.031 45.455 13.12 0.00 45.44 1.85
1904 1942 1.269569 TGTCACGTCTCGATGTGCTTT 60.270 47.619 13.12 0.00 45.44 3.51
1905 1943 0.313987 TGTCACGTCTCGATGTGCTT 59.686 50.000 13.12 0.00 45.44 3.91
1906 1944 0.528017 ATGTCACGTCTCGATGTGCT 59.472 50.000 13.12 0.30 45.44 4.40
1907 1945 2.188837 TATGTCACGTCTCGATGTGC 57.811 50.000 13.12 9.53 45.44 4.57
1908 1946 3.108881 CCTTATGTCACGTCTCGATGTG 58.891 50.000 11.99 11.99 46.78 3.21
1909 1947 2.479730 GCCTTATGTCACGTCTCGATGT 60.480 50.000 0.00 0.00 0.00 3.06
1910 1948 2.120232 GCCTTATGTCACGTCTCGATG 58.880 52.381 0.00 0.00 0.00 3.84
1911 1949 2.025155 AGCCTTATGTCACGTCTCGAT 58.975 47.619 0.00 0.00 0.00 3.59
1912 1950 1.132453 CAGCCTTATGTCACGTCTCGA 59.868 52.381 0.00 0.00 0.00 4.04
1913 1951 1.550065 CAGCCTTATGTCACGTCTCG 58.450 55.000 0.00 0.00 0.00 4.04
1914 1952 1.204941 ACCAGCCTTATGTCACGTCTC 59.795 52.381 0.00 0.00 0.00 3.36
1915 1953 1.267121 ACCAGCCTTATGTCACGTCT 58.733 50.000 0.00 0.00 0.00 4.18
1916 1954 2.094762 AACCAGCCTTATGTCACGTC 57.905 50.000 0.00 0.00 0.00 4.34
1917 1955 3.906720 ATAACCAGCCTTATGTCACGT 57.093 42.857 0.00 0.00 0.00 4.49
1918 1956 4.745125 CACTATAACCAGCCTTATGTCACG 59.255 45.833 0.00 0.00 0.00 4.35
1919 1957 5.057149 CCACTATAACCAGCCTTATGTCAC 58.943 45.833 0.00 0.00 0.00 3.67
1920 1958 4.102524 CCCACTATAACCAGCCTTATGTCA 59.897 45.833 0.00 0.00 0.00 3.58
1921 1959 4.505039 CCCCACTATAACCAGCCTTATGTC 60.505 50.000 0.00 0.00 0.00 3.06
1922 1960 3.394606 CCCCACTATAACCAGCCTTATGT 59.605 47.826 0.00 0.00 0.00 2.29
1923 1961 3.650942 TCCCCACTATAACCAGCCTTATG 59.349 47.826 0.00 0.00 0.00 1.90
1924 1962 3.910627 CTCCCCACTATAACCAGCCTTAT 59.089 47.826 0.00 0.00 0.00 1.73
1925 1963 3.311103 ACTCCCCACTATAACCAGCCTTA 60.311 47.826 0.00 0.00 0.00 2.69
1926 1964 2.127708 CTCCCCACTATAACCAGCCTT 58.872 52.381 0.00 0.00 0.00 4.35
1927 1965 1.009675 ACTCCCCACTATAACCAGCCT 59.990 52.381 0.00 0.00 0.00 4.58
1928 1966 1.508256 ACTCCCCACTATAACCAGCC 58.492 55.000 0.00 0.00 0.00 4.85
1929 1967 3.710165 AGTTACTCCCCACTATAACCAGC 59.290 47.826 0.00 0.00 0.00 4.85
1930 1968 5.952347 AAGTTACTCCCCACTATAACCAG 57.048 43.478 0.00 0.00 0.00 4.00
1931 1969 6.608808 GTCTAAGTTACTCCCCACTATAACCA 59.391 42.308 0.00 0.00 0.00 3.67
1932 1970 6.838090 AGTCTAAGTTACTCCCCACTATAACC 59.162 42.308 0.00 0.00 0.00 2.85
1933 1971 7.894753 AGTCTAAGTTACTCCCCACTATAAC 57.105 40.000 0.00 0.00 0.00 1.89
1937 1975 9.804977 GATATTAGTCTAAGTTACTCCCCACTA 57.195 37.037 0.00 0.00 0.00 2.74
1938 1976 8.287350 TGATATTAGTCTAAGTTACTCCCCACT 58.713 37.037 0.00 0.00 0.00 4.00
1939 1977 8.474710 TGATATTAGTCTAAGTTACTCCCCAC 57.525 38.462 0.00 0.00 0.00 4.61
1962 2000 8.470657 AACTTAGACTAGTCTCATATGCATGA 57.529 34.615 28.42 4.61 40.93 3.07
2030 2068 9.050601 AGTCTATGAGCAAATAAATAGAGCAAC 57.949 33.333 0.00 0.00 33.45 4.17
2032 2070 8.424133 TGAGTCTATGAGCAAATAAATAGAGCA 58.576 33.333 0.00 0.00 33.45 4.26
2059 2097 6.269315 TCACATAACGCTTTTCAACAAATGT 58.731 32.000 0.00 0.00 0.00 2.71
2060 2098 6.746104 TCACATAACGCTTTTCAACAAATG 57.254 33.333 0.00 0.00 0.00 2.32
2065 2103 4.794169 ACCATCACATAACGCTTTTCAAC 58.206 39.130 0.00 0.00 0.00 3.18
2094 2132 8.543774 AGGAGAGATGTGTTTGAAGTAACATAT 58.456 33.333 0.00 0.00 40.92 1.78
2104 2142 7.009179 AGTTAATGAGGAGAGATGTGTTTGA 57.991 36.000 0.00 0.00 0.00 2.69
2175 2213 7.015389 GCCTTAGTCATAGTGGGAGTAACTTAT 59.985 40.741 0.00 0.00 0.00 1.73
2210 2258 9.774071 TTAAGTTACTACCTAAGTTACTCCCAT 57.226 33.333 0.00 0.00 45.09 4.00
2265 2313 8.730680 GCACCTCTTTTCTCATTAAATACTTGA 58.269 33.333 0.00 0.00 0.00 3.02
2281 2329 3.626930 TGTTACCACAAGCACCTCTTTT 58.373 40.909 0.00 0.00 31.27 2.27
2326 2374 2.159382 GACTCATTTTGCCTCGGGAAA 58.841 47.619 0.00 0.00 33.75 3.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.