>input_sequence_78181
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-----------------------------------------------------------------------------ATG
TCCTTGTGCTCCGCGTCGAAGCTGAGCTTGAACACCTCGCGCGCGTCCTCCGTGGTCCGCCGCCTGCCGGCGCCCCCATC
GTGCTTCCTGCTTAGGCGCCACGTGACCTTTGCCCCGTCGAACACGTCGACGACCGCCGTGCCGGGGCGGAGGGCGAGCA
GGACGTGCTCCGCACCGGCCCCGCGCGGCAGGCTGGCCTTCATCAGCGGCACGGACGGTGCCGCGGCGAGGAGCGTGGAA
ACGTACGCCTTGGCCGCCAAGAAGACGCGGTTGTGCAGGGCGCCGTCGAACTCCTCGATGAGCACGGCGTGGCGCCGGGC
GGAGGCTGGCGGCAGGAGGAGCAGCGCGCCGAGGGCCGTGCCTGGGAGGACGTCGGCGAGCACCCGGCGCAGCAGCATGG
CCGCGCCCAGCACGGAAGTTGCCGTCGTGACGGCGCTCTTGTACCGTTCCAGCGCTCTGCTGTTGGGGGATGTCATGGCC
ATGGCCGGCTCCAACTAA--------------------------------------------------------------
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>chr3A_1_TraesCS3A01G230800
TGTTTTTCATTATTAGTACATGGGAACAAAGGTTTTCCTTTGAATCAATTGTATATGACAACAAAGTAGTCAAAAGAATA
CATGCTAGGTAAAGAAAGAACAACCACAGATATTTGACAAACCGAGATTGATTTTGTTCAGGATCCATCGAGCAGAACTT
CTGGGAGAGAACTGGCGCGGTGTTACTTTTGATTGCTAGATCTTGTGTTCTTGGAGAGTAAGGAGTAGCCGGCGTATTGG
AGAAGAACTAGAAAACCTAGATACATAATTTGGAAAACTGGGGAGAGAAAGATCGAGCGTTTGTTTTCTGTGCGAGAAAC
CTCGGCGGCTATACGATGCATCAGATCGCTAACCTAGACGCTTTCCTTTTCCCGAGTTAACCAGGCCGATGGACATGAAA
ATAGTACTGGTCAGGTAAGAATAGCCTAAAGGACTAAAGCAGTTTGTTCGTCGTCCATTGCAACTTG-------------
-------------------CAACATGAGTTGGATTAG-----TACTACTAAAACTAACCTTGTGATTCTTGGAAACAGGG
TTGCCCCCGTCGGAGCTTCCCGTCGCTTCCCTCCGTGGCGCCGTCGCCAGGGCGCAATCGACATCTTCGACCAACAATAT
GGACCTGTTCTTCATCCGAATCAGCAGTTTCCTCAGCTCGGTGTTGGACCTGACGCTGCCGACGTCGAGATCATACACGT
CGAAATGGAGGTGGTTGGAGATCGCGGCGACCAAGCTGGACTTGCCGGTGCCGGGCGGGCCGTGGATCAGGTAGCCCCTC
TTCCACGCCCTCCCCGTCTGCCGGTAGTACTCCTTCCGGGTCAAGAACCTGTCCAGGTCGTCTACCACGGCCTGCCGCAG
CGCGTCGTCCATGGCCACCGTCGCGAACGTCGAGGCGTTGCGGAGCCTCACGGTCCGCCACTTGCCCCACTCGTTGCTGT
ACAGCTTGGTCTGCCTCTGCTCCTGGGACATGGCCTCCACGCGGGCCATGACGGCCGGCAGGTAGGAGCCGAGCACCATG
TCCTTGTGCTCCGCGTCGAAGCTGAGCTTGAACACCTCGCGCGCGTCCTCCGTGGTCCGCCGCCTGCCGGCGCCCCCATC
GTGCTTCCTGCTTAGGCGCCACGTGACCTTTGCCCCGTCGAACACGTCGACGACCGCCGTGCCGGGGCGGAGGGCGAGCA
GGACGTGCTCCGCACCGGCCCCGCGCGGCAGGCTGGCCTTCATCAGCGGCACGGACGGTGCCGCGGCGAGGAGCGTGGAA
ACGTACGCCTTGGCCGCCAAGAAGACGCGGTTGTGCAGGGCGCCGTCGAACTCCTCGATGAGCACGGCGTGGCGCCGGGC
GGAGGCTGGCGGCAGGAGGAGCAGCGCGCCGAGGGCCGTGCCTGGGAGGACGTCGGCGAGCACCCGGCGCAGCAGCATGG
CCGCGCCCAGCACGGAAGTTGCCGTCGTGACGGCGCTCTTGTACCGTTCCAGCGCTCTGCTGTTGGGGGATGTCATGGCC
ATGGCCGGCTCCAACTAACGCTGTAGCAGTGGGGGTTTGCTTAAGGTCTCGATCTTCTAATCAGGTGCTTGAGTTGGTTC
TGTGGAGCAACTGAGGAGAGCCTTTAATTGGAGCCGTAAAAAAAAATGCAAGGTCGGTTGCAACGGGGATTGATGATTGA
CCATTCGCTGTGTGTGATTGGTGTTTGCAACTTCACAAAGGAGATTAGTAGGTTCCACGTGGAGACCAGGGATGCGACCC
GTTAACCTAGTGAGTGGTTTCTTCGAAACTTCAATCGACCGCCCCACACCGAGGGCGTCAAAAGTGACCCCCAATCAAAG
TCTTTGCAGGGCCACCAATTGAGCACGTCCTCGTGGTGTTTTTTCGCGCACATACGACTTCCAAGGCGACTATGTTAGCG
CATTTTTTAACAGTTTTCGCTAAAGCACATCGAGACGTGACATAAGGCTGGTTATAGTGGGGAGTAACTTAGACTAATAT
CATGCATATGAGACTAGTCTAAGTTACTATCTTTATAGTGCAAAGTAACATAATAGTTGTGTCATAAGTTGCTCTATTTA
TTTGCTCATAGACTCAACATTTGTTGAAAAGCGTTATGTGATGGTAACATAATATGTTACTTCAAACACATCTCTCCTCA
TTAACTAGGTGCCACATAAGCAAACTTGTTTTGGGATGCGTTATGTTACTAGATAAGTTACTCCCACTATGA-----CTA
-----AGGCTAGCCATAATGGGAGTAACTTAGGTAGTAACTTAACACATCCCAAGACAATTTTGCTTATGTGTCAAGTAT
TTAATGAGAAAAGAGGTGCTTGTGGTAACATAATATGTTACTGTAACATAGCGTTTCCCGAGGCAAAATGAGTCTATGAG
ATAATAAATGAAGCAATCTATGATACTACTACTATGTTACTTTGTACTATGGAGGTAGTAACTTACACTAGTGTCATATG
CATGACACTAGTCTAAGTTACTCCCCACTATGACCAGCCTAACCTAAGTATTGCATATCTAGGTCTTA
>chr3B_414
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-------------GGTAAGAATAGTCTAAAGGACTAAAGCAGTTTGTTCGTCGTCCATTGCAACTTG-------------
-------------------CAACATGAGTTGGATTAG-----TACTA---AAACTAACCTTGTGATTCTTGGAAGCAGGG
CTGCCCCCGTCGGAGCTTCCCGTCGCCTCTCTCCGTGGCGCCGTCGCCATGGCGCAGTCGACATCTTCGACCAACAATAT
GGACCTGTTCTTCATCCGAATCAGCAGTTTCCTCAGCTCGGTGTTGGACCTGACGCCGCCGACGTCGAGGTCATACACGT
CGAAATGGAGGTGGTTGGAGATCGCGGCGACCAGGCTGGACTTGCCGGTGCCGGGCGGGCCGTGGACCAGGTAGCCCCTC
TTCCACGCCCTCCCCGTCTGCCGGTAGTACTCCTTCCGGGTCAAGAACCTGTCCAGGTCGTCCACCACAGCCTGCCGCAG
CGCGTCGTCCATGGCCACCGTCGCGAACGTCGAGGCGTTGCGGAGCCTCACTGTCCGCCACTTGCCCCACTCGTTGCTGT
ACAGCTTGGTCTGCCTCTGCTCCTGGGACATGGCCTCCACGCGGGCCATGACGGCCGGCAGGTAGGAGCCGAGCACCATG
TCCTTGTGCTCGGCGTCGAAGCTGAGCTTGAACACCTCGCGCGCGTCCTCCGTGGCCCGCCGCCTGCCGGCGCCCCCGTC
GTGCTTCCTGCTTAGGCGCCACGTGACCTTCGCCCCGTCGAACACGTCGACGACCGCCGTGCCGGGGCGCAGGGCGAGCA
GGACGTGCTCCGCACCAGCCCCGCGAGGCAGGCTGGCCTTCATCAGCGGCACGAACGGTGCCGCGGCGAGGAGCGTGGAA
ACGTACGCCTTGGCCACCAAGAAGACACGGTTGTACAGGGTGCCGTCGAACTCCTCGATGAGCACGGCGTGGCGCCGGGC
GGAGGCTGGCGGCAGGAGGAGCAACGCGCCGAGGGCCGTGCCTGGGAGGACGTCGGCGAGCACCCGGCGCAGCAGCATGG
CCGCGCCCAGCACGGAAGTTGCCGTCGTGACGGCGCTCTTGTACCGTTCCAGTGCTCTGCTGTTCGGGGATGTCATGGCC
ATGGTCGGCTCCAACTGACGCTGTAGCAGTGGGGGTTTGCTTAAGGTTTCGATCTTCTAATCAGGTGCTTGAGTTGGTTT
CTATGGAGGAGTCGTG-------------------------AAAAACGCAAGGTCGGTTGGAATGGGGATTGATGATTGA
CCATTCGC----TGTGATCGGTGTTTGCAACTTCACAAAGGAGATTAGTAGGTTCCACGTGGAGACCACGGATGCGACCC
CTTAACCAGGTGACTGGTTTCTTCGAAACTTCAATCGACCGCCCCACACCAC-GGCGTCAAAAGTG--------------
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>chr3D_428
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---------------------------AAAGGACTAAAGCAGTTTGTTCGTCGTCCATTGCAACTTGCAACATGAGTTGG
ATTTGTCCATTACAACTTGCAACATGAGTTGGATTATAGTACTACTA---AAACTAACCTTGTGATTCTTGGAAGCAGGG
CTGCCCCCGTCGGAGCTTCCCGTCGCTTCCCTCCGTGGTGCCGTCGCCACGGCGCAATCGACATCTTCGACCAACAGTAT
GGACCTGTTCTTCATCCGAATCAGCAGTTTCCTAAGCTCGGTGTTGGACCTGACGCTGCCGACGTCGAGATCATACACGT
CGAAATGGAGGTGGTTGGAGATCGCGGCGACCAGACTGGACTTGCCGGTGCCGGGCGGGCCGTGGATCAGGTAGCCCCTC
TTCCACGCCCTCCCCGTCTGCCGGTAGTACTCCTTCCGGGTCAAGAACCTGTCCAGGTCGTCCACCACGGCCTGCCGCAG
CGCGGCGTCCATGGCCACCGTCGCGAACGTCGAGGCGTTGCGGAGCCTCACGGTCCGCCACTTGCCCCACTCGTTGCTGT
ACAGCTTGGTCTGCCTCTGCTCCTGGGACATGGCCTCCACGCGGGCCATGACGGCCGGCAGGTAGGAGCCGAGCACCATG
TCCTTGTGCTCCGCGTCGAAGCTGAGCTTGAACACCTCGCGCGCGTCCTCCGTGGTCCGCCGCCTGCCGGCGCCCCCGTC
GTGCTTCCTGCTCAGGCGCCACGTGACCTTTGCCCCGTCGAACACGTCGACGACCGCCGTGCCGGGGCGCAGGGCGAGCA
GGACGTGCTCCGCATCGGCCCCGCGAGGCAGGCTGGCCTTCATCAGCGGCACGGACGGTGCCGCGGCGAGCAGCGTGGAA
ACGTACGCCTTGGCCGCCAAGAAGACGCGGTTGTACAGGGCGCCGTCGAACTCCTCGATGAGCACGGCGTGGCGCCGGGC
GGAGGCTGGCGGCAGGAGGAGCAGCGCGCCGAGGGCCGTGCCTGGGAGGACGTCGGCGAGCACCCGGCGCAGCAGCATGG
CCGCGCCCAGCACGGAAGTTGCCGTCGTTACGGCGCTCTTGTACCGTTCGAGCGCTCTGCTGCTCGGGGATGTCATGGCC
ATGGCCGGCTCCAACTCACGCTGTAGCGGTGGGGGTTTGCTTAAGGTTTCGATCTTCTAATCAGGTGCTTGAGTTGGTTC
TGTGGAGCAACTGAGGAGATCCTCTAATTAGAGTCGGAAAAAAAAAATCGAGGTCGGTTCTAATGGGGATTGATGATTGA
CCATTCGC----TGTGATCGGTGTCTGCAACTTCACAAAGGAGATTAGTAGGTTCCAGGTGGAGACCACGGATGCGACCC
CTTAACCTAGTGACTGGTTTCTTCGAAACTTCAACCGACCGCCCCACACCAAGGGCGTCAAAAGTGACCCCCAATCAAAG
TCTTTGCAGGGCCATCAATTCAGCACGTCCTCGTGGCGTTTTTTCACGCACAGACGACTCCCAAAGCGACTA-GTTAGCG
CATTTTTT------------------------------------------------------------------------
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>chr7B_1941
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---------------------------------------------------------TGGTGAGTAACATACACTAGTAA
CATACACATATCCCTAGACTATGTTACTACCTTCATAGTGGGTAGTAACATAAGTGTGGTAACATGTAAAGCTTCATTTA
TTAGGTTATAGACTCATACTTCATTGGGACATGTGATGTTACAGTAACTAGCTAAGTTACTATAACTACCTCTCTCCTCA
TTAACTCACTGCCACATAAGCAAATTTGCTGAGTTGGACTCGATGTTACTGCTAAAGTTACTCCCACTGTGG-----CTA
GTCT---------CATAGTGGGAGTAATTTAGGTAGTAACATAGCACAGTGCAAGAAAATTTTGCTTATGTGGCATGTAG
TTAATGAGGAGAGAGGTGTTTAGAGTAACATAATATGTTACTGTAACATAGCGCTTACCGAGAAAGAATGAGTCTACAAG
CTAATAAATGAAGCCATCTATGACACTACTACTACGTTACTTTGCACTATGGAGGTAGTAACTTAGACTAGTAACATATG
CATGACACTAGTATAAGTTACTCCCTACTATGACCAGCCT----------------------------
>chr1A_1943
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-----------------------------------------------------------GGGAGTAACATAGAGTAGTAA
GTTGCCGATGTTACTATTCTATGTTACTACCTCCATAGTGGGTAGTAACATATGATTGGCATCATGAAAGAGGTCATTTA
TTAGGTTATAGACTCATTATACCTTGAAATATGTGATGTTACAGTAATTACCTAAGTTACCACAAACCCATCTCTCCTCA
TTAATTAGCTGCCACATAAGCAATCTTGTATTGAAATGTGTGATGTTACTAGTTAAGTTACTCCCATTGTGA-----CTA
GTCTTAGGCTAGTCATAGT-GGGGTAACTTAGGTAGTAACTTAACACATCCCAAAATAATTTTGCTTATGTGGCAAGTAT
TTAATGAGGAAAGAGGTGCTTGTGGTAACATAATATGTTACAGTAACATAGCGCTTCCCGAGGCATAATGAGTATATGAG
CTGATAAATGAAGCCATCTATGACATTACTAATATATTACTTTGCACTATGGAGATAGTAACTTAGACTAGTGTCATATG
CATGACACTAGTATAAGTTATTCCCCACTATGACCAGCCT----------------------------
>chr1D_1946
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--------------------------------------------------------------AGTAACTTAGACTAGTAG
AATGCGTAGGTTACTAGTCTATGTTACTATCTTCATAGTGGGTAGTGTCATATGTGTGGTAACATAGATGAGTTCATTTA
TTACTTTGTAGACACATTTTACATTGGTAAGCGCTATGTGATGGTAACATACTATGTTACTCTATTTGACTCTCTCCTCA
TTAACTACTTGCCACCTCATCATTTTTGCTTATATGGCATCTATGTTACTACTTATGTTACTCCCACTATGA-----CTA
GCCTTAGGCTAGCCATAGT-GGGGTAACTTAGGTAGTAACTTAACACATTCCAAGACAATTTTGCTTATGTGACAAGTAT
TTAATGAGGAAAAAGGTGTTTGCGGTAACATAATATGTTACTGTAACATAGCACTTTCTGAGGCAAAATGAGTCTCTGAG
CTAATAAATGAAGCAATCTATGACACTACTACTATGTTCCTTTGCACTATGAAGATAGTAACTTAGACTAGTGTCATAAG
CATGATACTAGTATAAGTTACTCTCCACTATGACCAGCCT----------------------------
>chr6B_1977
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-------------CTAGACTATGTTACTACCTCCATAGTGGGTAGGAACATGTATGTAGTGTCATGCAGCGATGTATTTA
TTAGGATATAGGCTCATTATTTCTTGGAGTGTGTGATGTTCCAGTAACTTAGCTAGTTACCACAAACATCTCTCTCTTCA
TTAAATATGTGCCACATAAGCAAACTTGTATTGGAGTGTGTGATGTTACTCCTAAGTTCCTGCCCATTGTGACTAGCCTA
-----AGGCTAGCCATAGTGGGAGTAACTTAGGTAGTAACATAACACATCCCAAGAATCAATTGCTTCTGTGGCATGGAG
TTAATGAGGAAAGAGATGCTTGTGGTAACATAATATGTTACTGTAACATAACACACCCCGAGGCAAAATGAGTCTATATC
TCAATTAATGAAGGTTTGCATGTTACCATTCATATGTTACTACCCACTATGAAGGTAGTAACATAGATTAATAACATATG
CATGTTACTAGTCTAAGTTACAACCCACTATGACCAGCCTAA--------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS-----------S-------------------------------------------------------
-----------------------------------------------SSS------------------------S-----
S------------------------------------------------S------------------------------
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---------------------------------S----------------------------------------------
--------------------------------------------------------------S-----------------
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-----------------------------------------------------------------------------S--
---------------------------------------------------------------------S----------
-------------------------S------------------------------------------------------
----------------------------------S---------------------------------------------
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----------------------------------------------------------------S---------------
----------------S------------------------------S--------------------------------
-------------------S---S-----S---S--S---------S-------------S--S----------------
--------SSSS------S-------------------------------------------------S-----------
S------------S------------------------------------S-----------------------------
--------------S-----S---------------S--------S------S------S----S-------S-------
--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------S--S
----------SS---------S-----------S------SSS----------S---S---------S-S---S------
--S-S-S---------SS----S----------------------------S---------S------------------
----------------------------------S-----------------S---------------------------
-----------------S------------------------------------------------------S-------
--------S--------------------------------------------S--------------------------
S-------------------------------------------S--------------------S--------------
------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_299
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---------------------------------------GGGGAGAGAAAGATCGAGCG---------------------
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>reverse_1943
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----------------------AAGCACATCGAGACGTGACA--------------------------------------
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