Multiple sequence alignment - TraesCS3A01G226400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G226400 chr3A 100.000 3845 0 0 1 3845 423706483 423710327 0.000000e+00 7101.0
1 TraesCS3A01G226400 chr3A 95.425 306 13 1 2292 2596 423088213 423088518 1.610000e-133 486.0
2 TraesCS3A01G226400 chr3A 94.822 309 16 0 2292 2600 697737298 697736990 2.080000e-132 483.0
3 TraesCS3A01G226400 chr3A 93.478 184 12 0 1758 1941 691498617 691498800 1.360000e-69 274.0
4 TraesCS3A01G226400 chr3A 89.352 216 17 4 1758 1967 727393575 727393790 2.280000e-67 267.0
5 TraesCS3A01G226400 chr3B 89.330 1790 110 36 1 1756 416034778 416033036 0.000000e+00 2172.0
6 TraesCS3A01G226400 chr3B 89.945 1273 95 16 2595 3845 416032743 416031482 0.000000e+00 1611.0
7 TraesCS3A01G226400 chr3B 94.118 289 13 1 2005 2293 416033023 416032739 1.640000e-118 436.0
8 TraesCS3A01G226400 chr3D 92.206 1283 60 15 2595 3845 305746863 305748137 0.000000e+00 1779.0
9 TraesCS3A01G226400 chr3D 90.971 1329 78 20 428 1727 305745125 305746440 0.000000e+00 1751.0
10 TraesCS3A01G226400 chr3D 95.161 310 15 0 1984 2293 305746558 305746867 1.240000e-134 490.0
11 TraesCS3A01G226400 chr5A 96.166 313 11 1 2287 2598 451732857 451733169 9.530000e-141 510.0
12 TraesCS3A01G226400 chr5A 95.146 309 15 0 2290 2598 343129958 343130266 4.460000e-134 488.0
13 TraesCS3A01G226400 chr5A 94.586 314 15 2 2288 2599 105418582 105418895 5.780000e-133 484.0
14 TraesCS3A01G226400 chr5A 89.815 216 16 3 1758 1967 68937358 68937143 4.890000e-69 272.0
15 TraesCS3A01G226400 chr5A 80.571 350 57 9 2959 3305 667930647 667930988 3.810000e-65 259.0
16 TraesCS3A01G226400 chr5A 88.532 218 15 4 1758 1966 602996847 602997063 4.930000e-64 255.0
17 TraesCS3A01G226400 chr5A 80.347 346 56 10 2964 3305 570172954 570173291 6.380000e-63 252.0
18 TraesCS3A01G226400 chr5A 79.191 346 59 12 2965 3306 447543098 447542762 1.070000e-55 228.0
19 TraesCS3A01G226400 chr7A 95.440 307 14 0 2292 2598 649491776 649492082 1.240000e-134 490.0
20 TraesCS3A01G226400 chr7A 95.410 305 14 0 2292 2596 125362969 125362665 1.610000e-133 486.0
21 TraesCS3A01G226400 chr7A 95.425 306 13 1 2292 2596 246403458 246403763 1.610000e-133 486.0
22 TraesCS3A01G226400 chr7A 91.071 224 10 6 1758 1972 674009897 674009675 1.040000e-75 294.0
23 TraesCS3A01G226400 chr7A 84.328 268 31 6 5 270 128218340 128218082 6.380000e-63 252.0
24 TraesCS3A01G226400 chr7A 80.571 350 49 17 2964 3306 698738333 698737996 6.380000e-63 252.0
25 TraesCS3A01G226400 chr7A 91.176 68 1 3 59 121 127861708 127861775 1.900000e-13 87.9
26 TraesCS3A01G226400 chr1A 94.268 314 16 2 2292 2604 484330933 484330621 2.690000e-131 479.0
27 TraesCS3A01G226400 chr1B 91.403 221 12 1 1758 1971 474114427 474114647 2.900000e-76 296.0
28 TraesCS3A01G226400 chr6A 91.080 213 13 4 1759 1965 90750593 90750805 2.260000e-72 283.0
29 TraesCS3A01G226400 chr4A 90.741 216 13 2 1758 1966 617503897 617504112 8.130000e-72 281.0
30 TraesCS3A01G226400 chr2B 88.479 217 19 4 1758 1968 725568515 725568731 1.370000e-64 257.0
31 TraesCS3A01G226400 chr2B 78.611 360 59 16 2953 3305 52719588 52719936 5.000000e-54 222.0
32 TraesCS3A01G226400 chr7D 83.824 272 29 6 5 270 127503425 127503163 1.070000e-60 244.0
33 TraesCS3A01G226400 chr7D 79.202 351 53 18 2964 3306 606683469 606683131 3.870000e-55 226.0
34 TraesCS3A01G226400 chr5B 79.598 348 53 17 2964 3306 463219750 463219416 2.310000e-57 233.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G226400 chr3A 423706483 423710327 3844 False 7101.000000 7101 100.000000 1 3845 1 chr3A.!!$F2 3844
1 TraesCS3A01G226400 chr3B 416031482 416034778 3296 True 1406.333333 2172 91.131000 1 3845 3 chr3B.!!$R1 3844
2 TraesCS3A01G226400 chr3D 305745125 305748137 3012 False 1340.000000 1779 92.779333 428 3845 3 chr3D.!!$F1 3417

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
264 280 0.103208 GCGAATCTCACCGACCATCT 59.897 55.0 0.0 0.0 0.0 2.90 F
1818 1986 0.171007 CCTATTGTGTTTGCCAGCCG 59.829 55.0 0.0 0.0 0.0 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1864 2032 0.098200 TCGTCAAGTATCGAGGTGCG 59.902 55.0 0.00 0.0 42.69 5.34 R
3207 3392 0.098728 GTGTGCAGCACAACGTTCTT 59.901 50.0 29.84 0.0 46.28 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 1.279496 TTATGTGGCCTCTCAGCAGT 58.721 50.000 3.32 0.00 0.00 4.40
129 137 2.699954 TCAACTTGTAAGCAGCCTAGC 58.300 47.619 0.00 0.00 0.00 3.42
130 138 1.394917 CAACTTGTAAGCAGCCTAGCG 59.605 52.381 0.00 0.00 40.15 4.26
131 139 0.608640 ACTTGTAAGCAGCCTAGCGT 59.391 50.000 0.00 0.00 40.15 5.07
132 140 1.822990 ACTTGTAAGCAGCCTAGCGTA 59.177 47.619 0.00 0.00 40.15 4.42
133 141 2.159226 ACTTGTAAGCAGCCTAGCGTAG 60.159 50.000 0.00 0.00 40.15 3.51
134 142 1.471119 TGTAAGCAGCCTAGCGTAGT 58.529 50.000 0.00 0.00 40.15 2.73
135 143 2.646930 TGTAAGCAGCCTAGCGTAGTA 58.353 47.619 0.00 0.00 40.15 1.82
136 144 3.018856 TGTAAGCAGCCTAGCGTAGTAA 58.981 45.455 0.00 0.00 40.15 2.24
137 145 2.580966 AAGCAGCCTAGCGTAGTAAC 57.419 50.000 0.00 0.00 40.15 2.50
138 146 0.745468 AGCAGCCTAGCGTAGTAACC 59.255 55.000 0.00 0.00 40.15 2.85
143 151 1.263752 GCCTAGCGTAGTAACCGAGAG 59.736 57.143 0.00 0.00 0.00 3.20
145 153 2.287373 CCTAGCGTAGTAACCGAGAGTG 59.713 54.545 0.00 0.00 0.00 3.51
183 196 4.759782 AGACGTTGGATCTCTATTGGTTG 58.240 43.478 0.00 0.00 0.00 3.77
188 201 2.777692 TGGATCTCTATTGGTTGGACCC 59.222 50.000 0.00 0.00 37.50 4.46
224 240 8.899771 TGAAGAAGAAAACTAAATTCGAAACCT 58.100 29.630 0.00 0.00 32.04 3.50
225 241 9.170584 GAAGAAGAAAACTAAATTCGAAACCTG 57.829 33.333 0.00 0.00 32.04 4.00
226 242 7.649057 AGAAGAAAACTAAATTCGAAACCTGG 58.351 34.615 0.00 0.00 32.04 4.45
227 243 5.769367 AGAAAACTAAATTCGAAACCTGGC 58.231 37.500 0.00 0.00 32.04 4.85
228 244 5.300792 AGAAAACTAAATTCGAAACCTGGCA 59.699 36.000 0.00 0.00 32.04 4.92
229 245 5.523438 AAACTAAATTCGAAACCTGGCAA 57.477 34.783 0.00 0.00 0.00 4.52
230 246 5.523438 AACTAAATTCGAAACCTGGCAAA 57.477 34.783 0.00 0.00 0.00 3.68
231 247 5.121221 ACTAAATTCGAAACCTGGCAAAG 57.879 39.130 0.00 0.00 0.00 2.77
246 262 2.483877 GGCAAAGTGGCAAATAAAAGGC 59.516 45.455 0.00 0.00 43.14 4.35
254 270 3.761218 TGGCAAATAAAAGGCGAATCTCA 59.239 39.130 0.00 0.00 0.00 3.27
256 272 4.105486 GCAAATAAAAGGCGAATCTCACC 58.895 43.478 0.00 0.00 0.00 4.02
264 280 0.103208 GCGAATCTCACCGACCATCT 59.897 55.000 0.00 0.00 0.00 2.90
265 281 1.866063 GCGAATCTCACCGACCATCTC 60.866 57.143 0.00 0.00 0.00 2.75
266 282 1.269309 CGAATCTCACCGACCATCTCC 60.269 57.143 0.00 0.00 0.00 3.71
267 283 1.069358 GAATCTCACCGACCATCTCCC 59.931 57.143 0.00 0.00 0.00 4.30
268 284 1.109920 ATCTCACCGACCATCTCCCG 61.110 60.000 0.00 0.00 0.00 5.14
348 364 7.507733 AGCATGAGATATCCAAAGTTCAATC 57.492 36.000 0.00 0.00 0.00 2.67
381 397 9.480053 CAAATTTATTTCCCATACACCATGATC 57.520 33.333 0.00 0.00 36.69 2.92
402 418 3.384467 TCAGATGGAGTGCATGAACGATA 59.616 43.478 0.12 0.00 0.00 2.92
467 483 6.521151 AGCTTTCCTTGTATGGATTTCTTG 57.479 37.500 0.00 0.00 35.83 3.02
525 541 3.663995 TGGAAAACAATGTGCCATCTG 57.336 42.857 0.00 0.00 0.00 2.90
640 666 5.419471 GGTTAAAGCCACCAACCACATTATA 59.581 40.000 0.00 0.00 41.17 0.98
720 746 3.209410 GAGCCAATTTCTCGTGATGGAT 58.791 45.455 9.26 3.31 32.82 3.41
793 819 2.125512 GAGCTTGCACCGATCCGT 60.126 61.111 0.00 0.00 0.00 4.69
822 849 5.013183 GCACCCTCCACTCCACTATATAAAT 59.987 44.000 0.00 0.00 0.00 1.40
852 880 4.096558 GCACCGAATGGCGCGAAA 62.097 61.111 12.10 0.00 39.70 3.46
853 881 2.791256 CACCGAATGGCGCGAAAT 59.209 55.556 12.10 0.00 39.70 2.17
855 883 1.743623 ACCGAATGGCGCGAAATCA 60.744 52.632 12.10 1.74 39.70 2.57
859 887 1.388888 GAATGGCGCGAAATCAATCG 58.611 50.000 12.10 0.00 45.41 3.34
1122 1169 2.512515 GCCCGCACTGTCATCCTC 60.513 66.667 0.00 0.00 0.00 3.71
1142 1189 1.207089 CATCAAGCCCGGAGTCTACAA 59.793 52.381 0.73 0.00 0.00 2.41
1144 1191 0.608640 CAAGCCCGGAGTCTACAAGT 59.391 55.000 0.73 0.00 0.00 3.16
1149 1196 2.233186 GCCCGGAGTCTACAAGTAAGTT 59.767 50.000 0.73 0.00 0.00 2.66
1150 1197 3.306571 GCCCGGAGTCTACAAGTAAGTTT 60.307 47.826 0.73 0.00 0.00 2.66
1166 1229 9.007901 CAAGTAAGTTTCCTTCTGAATTCTGAT 57.992 33.333 14.89 1.79 31.67 2.90
1168 1231 9.660180 AGTAAGTTTCCTTCTGAATTCTGATAC 57.340 33.333 14.89 11.43 31.67 2.24
1169 1232 7.602517 AAGTTTCCTTCTGAATTCTGATACG 57.397 36.000 14.89 7.55 31.67 3.06
1170 1233 6.109359 AGTTTCCTTCTGAATTCTGATACGG 58.891 40.000 14.89 14.60 31.67 4.02
1173 1236 4.342378 TCCTTCTGAATTCTGATACGGGAG 59.658 45.833 14.89 8.65 0.00 4.30
1174 1237 8.943070 TTTCCTTCTGAATTCTGATACGGGAGT 61.943 40.741 14.89 0.00 38.87 3.85
1217 1280 2.515523 GCATGCCTGATCGCCTGT 60.516 61.111 6.36 0.00 0.00 4.00
1284 1347 3.305110 CAACATAACACTTTTCGGCACC 58.695 45.455 0.00 0.00 0.00 5.01
1319 1382 0.741221 GTCATCACCTGGAACGAGCC 60.741 60.000 0.00 0.00 0.00 4.70
1324 1387 4.785453 CCTGGAACGAGCCCTGGC 62.785 72.222 0.00 0.00 36.26 4.85
1351 1414 1.246056 CGACACTTCCCCTACCGTGA 61.246 60.000 0.00 0.00 0.00 4.35
1358 1421 2.180017 CCCTACCGTGACCGTTCG 59.820 66.667 0.00 0.00 0.00 3.95
1413 1476 1.811558 CGGGTAAGTCTGCCATCCATG 60.812 57.143 0.00 0.00 0.00 3.66
1427 1490 1.081242 CCATGGTTCGTGCTTGCAC 60.081 57.895 15.01 15.01 0.00 4.57
1429 1492 0.661187 CATGGTTCGTGCTTGCACAC 60.661 55.000 22.97 14.97 37.19 3.82
1441 1504 1.748329 TTGCACACAGAGAGCGAGGT 61.748 55.000 0.00 0.00 36.53 3.85
1465 1528 2.708514 CGTGTTGACAGTTTCTTGCTG 58.291 47.619 0.00 0.00 39.67 4.41
1492 1555 2.477754 CTCGGGGTTTTAGAACACGTTC 59.522 50.000 1.54 1.54 40.18 3.95
1502 1565 2.981977 GAACACGTTCGGGACCAGCA 62.982 60.000 0.34 0.00 0.00 4.41
1503 1566 2.280524 CACGTTCGGGACCAGCAA 60.281 61.111 0.00 0.00 0.00 3.91
1504 1567 2.030562 ACGTTCGGGACCAGCAAG 59.969 61.111 0.00 0.00 0.00 4.01
1506 1569 2.281484 GTTCGGGACCAGCAAGCA 60.281 61.111 0.00 0.00 0.00 3.91
1526 1589 2.278206 CCATCGCGGTGAGAGTCG 60.278 66.667 23.56 0.00 0.00 4.18
1645 1708 0.981183 AAGGTGGCACCGACTTCATA 59.019 50.000 29.76 0.00 44.90 2.15
1681 1747 4.082136 CGGGCTCTCTTTGAAGTAAGTACT 60.082 45.833 0.00 0.00 38.39 2.73
1682 1748 5.125097 CGGGCTCTCTTTGAAGTAAGTACTA 59.875 44.000 0.00 0.00 34.99 1.82
1683 1749 6.331845 GGGCTCTCTTTGAAGTAAGTACTAC 58.668 44.000 0.00 0.00 34.99 2.73
1761 1929 3.788775 GTACGCACGAGAGAGGTTT 57.211 52.632 0.00 0.00 0.00 3.27
1762 1930 1.337821 GTACGCACGAGAGAGGTTTG 58.662 55.000 0.00 0.00 0.00 2.93
1763 1931 1.068748 GTACGCACGAGAGAGGTTTGA 60.069 52.381 0.00 0.00 0.00 2.69
1764 1932 0.387929 ACGCACGAGAGAGGTTTGAA 59.612 50.000 0.00 0.00 0.00 2.69
1765 1933 1.000955 ACGCACGAGAGAGGTTTGAAT 59.999 47.619 0.00 0.00 0.00 2.57
1766 1934 1.391485 CGCACGAGAGAGGTTTGAATG 59.609 52.381 0.00 0.00 0.00 2.67
1767 1935 1.734465 GCACGAGAGAGGTTTGAATGG 59.266 52.381 0.00 0.00 0.00 3.16
1768 1936 1.734465 CACGAGAGAGGTTTGAATGGC 59.266 52.381 0.00 0.00 0.00 4.40
1769 1937 1.002366 CGAGAGAGGTTTGAATGGCG 58.998 55.000 0.00 0.00 0.00 5.69
1770 1938 1.373570 GAGAGAGGTTTGAATGGCGG 58.626 55.000 0.00 0.00 0.00 6.13
1771 1939 0.693049 AGAGAGGTTTGAATGGCGGT 59.307 50.000 0.00 0.00 0.00 5.68
1772 1940 1.087501 GAGAGGTTTGAATGGCGGTC 58.912 55.000 0.00 0.00 0.00 4.79
1773 1941 0.400213 AGAGGTTTGAATGGCGGTCA 59.600 50.000 0.00 0.00 0.00 4.02
1774 1942 1.004745 AGAGGTTTGAATGGCGGTCAT 59.995 47.619 0.00 0.00 37.79 3.06
1775 1943 1.133025 GAGGTTTGAATGGCGGTCATG 59.867 52.381 0.00 0.00 35.99 3.07
1776 1944 0.887933 GGTTTGAATGGCGGTCATGT 59.112 50.000 0.00 0.00 35.99 3.21
1777 1945 2.088423 GGTTTGAATGGCGGTCATGTA 58.912 47.619 0.00 0.00 35.99 2.29
1778 1946 2.490115 GGTTTGAATGGCGGTCATGTAA 59.510 45.455 0.00 0.00 35.99 2.41
1779 1947 3.130340 GGTTTGAATGGCGGTCATGTAAT 59.870 43.478 0.00 0.00 35.99 1.89
1780 1948 4.336993 GGTTTGAATGGCGGTCATGTAATA 59.663 41.667 0.00 0.00 35.99 0.98
1781 1949 5.505654 GGTTTGAATGGCGGTCATGTAATAG 60.506 44.000 0.00 0.00 35.99 1.73
1782 1950 3.738982 TGAATGGCGGTCATGTAATAGG 58.261 45.455 0.00 0.00 35.99 2.57
1783 1951 3.389656 TGAATGGCGGTCATGTAATAGGA 59.610 43.478 0.00 0.00 35.99 2.94
1784 1952 4.041567 TGAATGGCGGTCATGTAATAGGAT 59.958 41.667 0.00 0.00 35.99 3.24
1785 1953 5.247337 TGAATGGCGGTCATGTAATAGGATA 59.753 40.000 0.00 0.00 35.99 2.59
1786 1954 4.801330 TGGCGGTCATGTAATAGGATAG 57.199 45.455 0.00 0.00 0.00 2.08
1787 1955 4.412843 TGGCGGTCATGTAATAGGATAGA 58.587 43.478 0.00 0.00 0.00 1.98
1788 1956 4.219944 TGGCGGTCATGTAATAGGATAGAC 59.780 45.833 0.00 0.00 0.00 2.59
1789 1957 4.219944 GGCGGTCATGTAATAGGATAGACA 59.780 45.833 0.00 0.00 0.00 3.41
1790 1958 5.105310 GGCGGTCATGTAATAGGATAGACAT 60.105 44.000 0.00 0.00 32.95 3.06
1791 1959 5.807520 GCGGTCATGTAATAGGATAGACATG 59.192 44.000 7.39 7.39 44.21 3.21
1792 1960 6.572509 GCGGTCATGTAATAGGATAGACATGT 60.573 42.308 0.00 0.00 43.72 3.21
1793 1961 7.362660 GCGGTCATGTAATAGGATAGACATGTA 60.363 40.741 0.00 0.00 43.72 2.29
1794 1962 8.184848 CGGTCATGTAATAGGATAGACATGTAG 58.815 40.741 0.00 3.77 43.72 2.74
1795 1963 9.026121 GGTCATGTAATAGGATAGACATGTAGT 57.974 37.037 0.00 0.00 43.72 2.73
1796 1964 9.847706 GTCATGTAATAGGATAGACATGTAGTG 57.152 37.037 0.00 0.00 43.72 2.74
1797 1965 9.588096 TCATGTAATAGGATAGACATGTAGTGT 57.412 33.333 0.00 0.00 43.72 3.55
1800 1968 8.857098 TGTAATAGGATAGACATGTAGTGTTCC 58.143 37.037 0.00 1.51 42.36 3.62
1801 1969 9.080097 GTAATAGGATAGACATGTAGTGTTCCT 57.920 37.037 15.47 15.47 44.19 3.36
1804 1972 9.830186 ATAGGATAGACATGTAGTGTTCCTATT 57.170 33.333 19.57 10.78 46.66 1.73
1805 1973 7.957002 AGGATAGACATGTAGTGTTCCTATTG 58.043 38.462 0.00 0.00 41.59 1.90
1806 1974 7.565398 AGGATAGACATGTAGTGTTCCTATTGT 59.435 37.037 0.00 0.00 41.59 2.71
1807 1975 7.653713 GGATAGACATGTAGTGTTCCTATTGTG 59.346 40.741 0.00 0.00 42.36 3.33
1808 1976 6.360370 AGACATGTAGTGTTCCTATTGTGT 57.640 37.500 0.00 0.00 42.36 3.72
1809 1977 6.769512 AGACATGTAGTGTTCCTATTGTGTT 58.230 36.000 0.00 0.00 42.36 3.32
1810 1978 7.224297 AGACATGTAGTGTTCCTATTGTGTTT 58.776 34.615 0.00 0.00 42.36 2.83
1811 1979 7.173218 AGACATGTAGTGTTCCTATTGTGTTTG 59.827 37.037 0.00 0.00 42.36 2.93
1812 1980 5.682943 TGTAGTGTTCCTATTGTGTTTGC 57.317 39.130 0.00 0.00 0.00 3.68
1813 1981 4.517453 TGTAGTGTTCCTATTGTGTTTGCC 59.483 41.667 0.00 0.00 0.00 4.52
1814 1982 3.561143 AGTGTTCCTATTGTGTTTGCCA 58.439 40.909 0.00 0.00 0.00 4.92
1815 1983 3.569701 AGTGTTCCTATTGTGTTTGCCAG 59.430 43.478 0.00 0.00 0.00 4.85
1816 1984 2.295909 TGTTCCTATTGTGTTTGCCAGC 59.704 45.455 0.00 0.00 0.00 4.85
1817 1985 1.544724 TCCTATTGTGTTTGCCAGCC 58.455 50.000 0.00 0.00 0.00 4.85
1818 1986 0.171007 CCTATTGTGTTTGCCAGCCG 59.829 55.000 0.00 0.00 0.00 5.52
1819 1987 0.171007 CTATTGTGTTTGCCAGCCGG 59.829 55.000 0.00 0.00 0.00 6.13
1820 1988 0.538516 TATTGTGTTTGCCAGCCGGT 60.539 50.000 1.90 0.00 33.28 5.28
1821 1989 1.398958 ATTGTGTTTGCCAGCCGGTT 61.399 50.000 1.90 0.00 33.28 4.44
1822 1990 2.027460 GTGTTTGCCAGCCGGTTG 59.973 61.111 11.98 11.98 33.28 3.77
1823 1991 2.441164 TGTTTGCCAGCCGGTTGT 60.441 55.556 17.69 0.00 33.28 3.32
1824 1992 2.027460 GTTTGCCAGCCGGTTGTG 59.973 61.111 17.69 9.73 33.28 3.33
1825 1993 3.222855 TTTGCCAGCCGGTTGTGG 61.223 61.111 17.69 15.43 36.85 4.17
1833 2001 4.157607 CCGGTTGTGGCTTTGAGT 57.842 55.556 0.00 0.00 0.00 3.41
1834 2002 2.414750 CCGGTTGTGGCTTTGAGTT 58.585 52.632 0.00 0.00 0.00 3.01
1835 2003 0.744281 CCGGTTGTGGCTTTGAGTTT 59.256 50.000 0.00 0.00 0.00 2.66
1836 2004 1.136110 CCGGTTGTGGCTTTGAGTTTT 59.864 47.619 0.00 0.00 0.00 2.43
1837 2005 2.359531 CCGGTTGTGGCTTTGAGTTTTA 59.640 45.455 0.00 0.00 0.00 1.52
1838 2006 3.550030 CCGGTTGTGGCTTTGAGTTTTAG 60.550 47.826 0.00 0.00 0.00 1.85
1839 2007 3.381045 GGTTGTGGCTTTGAGTTTTAGC 58.619 45.455 0.00 0.00 0.00 3.09
1840 2008 3.068165 GGTTGTGGCTTTGAGTTTTAGCT 59.932 43.478 0.00 0.00 35.30 3.32
1841 2009 4.290969 GTTGTGGCTTTGAGTTTTAGCTC 58.709 43.478 0.00 0.00 35.30 4.09
1842 2010 3.820557 TGTGGCTTTGAGTTTTAGCTCT 58.179 40.909 0.00 0.00 36.51 4.09
1843 2011 4.207165 TGTGGCTTTGAGTTTTAGCTCTT 58.793 39.130 0.00 0.00 36.51 2.85
1844 2012 4.644685 TGTGGCTTTGAGTTTTAGCTCTTT 59.355 37.500 0.00 0.00 36.51 2.52
1845 2013 5.215903 GTGGCTTTGAGTTTTAGCTCTTTC 58.784 41.667 0.00 0.00 36.51 2.62
1846 2014 4.024048 TGGCTTTGAGTTTTAGCTCTTTCG 60.024 41.667 0.00 0.00 36.51 3.46
1847 2015 4.213482 GGCTTTGAGTTTTAGCTCTTTCGA 59.787 41.667 0.00 0.00 36.51 3.71
1848 2016 5.378180 GCTTTGAGTTTTAGCTCTTTCGAG 58.622 41.667 0.00 0.00 40.35 4.04
1865 2033 8.874745 TCTTTCGAGCTTATTGTTTATTTTCG 57.125 30.769 0.00 0.00 0.00 3.46
1866 2034 7.480542 TCTTTCGAGCTTATTGTTTATTTTCGC 59.519 33.333 0.00 0.00 0.00 4.70
1867 2035 6.171932 TCGAGCTTATTGTTTATTTTCGCA 57.828 33.333 0.00 0.00 0.00 5.10
1868 2036 6.019152 TCGAGCTTATTGTTTATTTTCGCAC 58.981 36.000 0.00 0.00 0.00 5.34
1869 2037 5.227184 CGAGCTTATTGTTTATTTTCGCACC 59.773 40.000 0.00 0.00 0.00 5.01
1870 2038 6.267496 AGCTTATTGTTTATTTTCGCACCT 57.733 33.333 0.00 0.00 0.00 4.00
1871 2039 6.322491 AGCTTATTGTTTATTTTCGCACCTC 58.678 36.000 0.00 0.00 0.00 3.85
1872 2040 5.227184 GCTTATTGTTTATTTTCGCACCTCG 59.773 40.000 0.00 0.00 40.15 4.63
1873 2041 6.483385 TTATTGTTTATTTTCGCACCTCGA 57.517 33.333 0.00 0.00 46.88 4.04
1882 2050 0.098200 TCGCACCTCGATACTTGACG 59.902 55.000 0.00 0.00 43.16 4.35
1883 2051 0.098200 CGCACCTCGATACTTGACGA 59.902 55.000 0.00 0.00 41.67 4.20
1884 2052 1.546834 GCACCTCGATACTTGACGAC 58.453 55.000 0.00 0.00 34.82 4.34
1885 2053 1.132643 GCACCTCGATACTTGACGACT 59.867 52.381 0.00 0.00 34.82 4.18
1886 2054 2.415625 GCACCTCGATACTTGACGACTT 60.416 50.000 0.00 0.00 34.82 3.01
1887 2055 3.834610 CACCTCGATACTTGACGACTTT 58.165 45.455 0.00 0.00 34.82 2.66
1888 2056 3.608506 CACCTCGATACTTGACGACTTTG 59.391 47.826 0.00 0.00 34.82 2.77
1889 2057 3.255149 ACCTCGATACTTGACGACTTTGT 59.745 43.478 0.00 0.00 34.82 2.83
1890 2058 4.235360 CCTCGATACTTGACGACTTTGTT 58.765 43.478 0.00 0.00 34.82 2.83
1891 2059 5.048504 ACCTCGATACTTGACGACTTTGTTA 60.049 40.000 0.00 0.00 34.82 2.41
1892 2060 5.285607 CCTCGATACTTGACGACTTTGTTAC 59.714 44.000 0.00 0.00 34.82 2.50
1893 2061 6.005583 TCGATACTTGACGACTTTGTTACT 57.994 37.500 0.00 0.00 33.62 2.24
1894 2062 5.854866 TCGATACTTGACGACTTTGTTACTG 59.145 40.000 0.00 0.00 33.62 2.74
1895 2063 5.060569 CGATACTTGACGACTTTGTTACTGG 59.939 44.000 0.00 0.00 0.00 4.00
1896 2064 4.395959 ACTTGACGACTTTGTTACTGGA 57.604 40.909 0.00 0.00 0.00 3.86
1897 2065 4.957296 ACTTGACGACTTTGTTACTGGAT 58.043 39.130 0.00 0.00 0.00 3.41
1898 2066 5.365619 ACTTGACGACTTTGTTACTGGATT 58.634 37.500 0.00 0.00 0.00 3.01
1899 2067 6.518493 ACTTGACGACTTTGTTACTGGATTA 58.482 36.000 0.00 0.00 0.00 1.75
1900 2068 7.159372 ACTTGACGACTTTGTTACTGGATTAT 58.841 34.615 0.00 0.00 0.00 1.28
1901 2069 8.308931 ACTTGACGACTTTGTTACTGGATTATA 58.691 33.333 0.00 0.00 0.00 0.98
1902 2070 9.146984 CTTGACGACTTTGTTACTGGATTATAA 57.853 33.333 0.00 0.00 0.00 0.98
1903 2071 9.661563 TTGACGACTTTGTTACTGGATTATAAT 57.338 29.630 0.00 0.00 0.00 1.28
1904 2072 9.661563 TGACGACTTTGTTACTGGATTATAATT 57.338 29.630 0.00 0.00 0.00 1.40
1933 2101 8.418597 AAAATATGAGCCATATGCATCTTTCT 57.581 30.769 0.19 0.00 44.83 2.52
1934 2102 7.392494 AATATGAGCCATATGCATCTTTCTG 57.608 36.000 0.19 0.00 44.83 3.02
1935 2103 4.426736 TGAGCCATATGCATCTTTCTGA 57.573 40.909 0.19 0.00 44.83 3.27
1936 2104 4.981812 TGAGCCATATGCATCTTTCTGAT 58.018 39.130 0.19 0.00 44.83 2.90
1937 2105 7.283354 ATATGAGCCATATGCATCTTTCTGATG 59.717 37.037 0.19 0.00 44.83 3.07
1947 2115 5.240713 CATCTTTCTGATGCAGGGTAAAC 57.759 43.478 0.00 0.00 44.96 2.01
1948 2116 3.686016 TCTTTCTGATGCAGGGTAAACC 58.314 45.455 0.00 0.00 40.67 3.27
1949 2117 4.872053 ATCTTTCTGATGCAGGGTAAACCC 60.872 45.833 10.41 10.41 44.54 4.11
1950 2118 7.862105 ATCTTTCTGATGCAGGGTAAACCCC 62.862 48.000 14.77 0.00 44.96 4.95
1989 2157 5.577860 AAAAACGAAAAGAAAAACGCACA 57.422 30.435 0.00 0.00 0.00 4.57
1990 2158 5.577860 AAAACGAAAAGAAAAACGCACAA 57.422 30.435 0.00 0.00 0.00 3.33
1991 2159 4.816277 AACGAAAAGAAAAACGCACAAG 57.184 36.364 0.00 0.00 0.00 3.16
1992 2160 4.086199 ACGAAAAGAAAAACGCACAAGA 57.914 36.364 0.00 0.00 0.00 3.02
1993 2161 4.095610 ACGAAAAGAAAAACGCACAAGAG 58.904 39.130 0.00 0.00 0.00 2.85
2066 2236 3.699894 CCTGCACTCCACCTCGCT 61.700 66.667 0.00 0.00 0.00 4.93
2069 2239 2.433318 GCACTCCACCTCGCTCAC 60.433 66.667 0.00 0.00 0.00 3.51
2070 2240 2.126307 CACTCCACCTCGCTCACG 60.126 66.667 0.00 0.00 42.01 4.35
2113 2283 3.745803 GGGCGTCCGAGTCGAACT 61.746 66.667 15.64 0.00 0.00 3.01
2134 2304 0.527817 CACGGGATACAGCTTCGTCC 60.528 60.000 0.00 0.00 39.74 4.79
2145 2315 1.080093 CTTCGTCCGGTGCAAGCTA 60.080 57.895 0.00 0.00 0.00 3.32
2233 2403 1.204704 CTCTCACCTACATGTCCGCAA 59.795 52.381 0.00 0.00 0.00 4.85
2293 2463 3.344515 GCCAACCAGAGGTAAACTTAGG 58.655 50.000 0.00 0.00 33.12 2.69
2294 2464 3.872630 GCCAACCAGAGGTAAACTTAGGG 60.873 52.174 0.00 0.00 33.12 3.53
2295 2465 3.344515 CAACCAGAGGTAAACTTAGGGC 58.655 50.000 0.00 0.00 33.12 5.19
2296 2466 1.914108 ACCAGAGGTAAACTTAGGGCC 59.086 52.381 0.00 0.00 32.11 5.80
2297 2467 2.197465 CCAGAGGTAAACTTAGGGCCT 58.803 52.381 12.58 12.58 0.00 5.19
2298 2468 2.170817 CCAGAGGTAAACTTAGGGCCTC 59.829 54.545 10.74 0.00 44.37 4.70
2301 2471 4.571369 GAGGTAAACTTAGGGCCTCTTT 57.429 45.455 10.74 9.16 41.68 2.52
2302 2472 4.262617 GAGGTAAACTTAGGGCCTCTTTG 58.737 47.826 10.74 0.85 41.68 2.77
2303 2473 3.914435 AGGTAAACTTAGGGCCTCTTTGA 59.086 43.478 10.74 0.00 0.00 2.69
2304 2474 4.540502 AGGTAAACTTAGGGCCTCTTTGAT 59.459 41.667 10.74 0.00 0.00 2.57
2305 2475 5.015284 AGGTAAACTTAGGGCCTCTTTGATT 59.985 40.000 10.74 1.66 0.00 2.57
2306 2476 5.357314 GGTAAACTTAGGGCCTCTTTGATTC 59.643 44.000 10.74 0.00 0.00 2.52
2307 2477 4.657814 AACTTAGGGCCTCTTTGATTCA 57.342 40.909 10.74 0.00 0.00 2.57
2308 2478 3.956744 ACTTAGGGCCTCTTTGATTCAC 58.043 45.455 10.74 0.00 0.00 3.18
2309 2479 3.330701 ACTTAGGGCCTCTTTGATTCACA 59.669 43.478 10.74 0.00 0.00 3.58
2310 2480 2.503895 AGGGCCTCTTTGATTCACAG 57.496 50.000 0.00 0.00 0.00 3.66
2311 2481 1.005215 AGGGCCTCTTTGATTCACAGG 59.995 52.381 0.00 1.39 0.00 4.00
2312 2482 1.004745 GGGCCTCTTTGATTCACAGGA 59.995 52.381 0.84 0.00 0.00 3.86
2313 2483 2.357569 GGGCCTCTTTGATTCACAGGAT 60.358 50.000 0.84 0.00 0.00 3.24
2314 2484 3.359950 GGCCTCTTTGATTCACAGGATT 58.640 45.455 0.00 0.00 0.00 3.01
2315 2485 3.766051 GGCCTCTTTGATTCACAGGATTT 59.234 43.478 0.00 0.00 0.00 2.17
2316 2486 4.221482 GGCCTCTTTGATTCACAGGATTTT 59.779 41.667 0.00 0.00 0.00 1.82
2317 2487 5.405797 GCCTCTTTGATTCACAGGATTTTC 58.594 41.667 8.94 0.00 0.00 2.29
2318 2488 5.047802 GCCTCTTTGATTCACAGGATTTTCA 60.048 40.000 8.94 0.00 0.00 2.69
2319 2489 6.517194 GCCTCTTTGATTCACAGGATTTTCAA 60.517 38.462 8.94 0.00 0.00 2.69
2320 2490 7.436118 CCTCTTTGATTCACAGGATTTTCAAA 58.564 34.615 0.19 0.00 0.00 2.69
2321 2491 7.927629 CCTCTTTGATTCACAGGATTTTCAAAA 59.072 33.333 0.19 0.00 0.00 2.44
2322 2492 9.485206 CTCTTTGATTCACAGGATTTTCAAAAT 57.515 29.630 0.00 0.00 0.00 1.82
2323 2493 9.263538 TCTTTGATTCACAGGATTTTCAAAATG 57.736 29.630 0.00 0.00 0.00 2.32
2324 2494 9.263538 CTTTGATTCACAGGATTTTCAAAATGA 57.736 29.630 0.00 0.00 0.00 2.57
2325 2495 9.610705 TTTGATTCACAGGATTTTCAAAATGAA 57.389 25.926 0.00 0.00 34.03 2.57
2326 2496 9.610705 TTGATTCACAGGATTTTCAAAATGAAA 57.389 25.926 0.00 1.57 43.84 2.69
2327 2497 9.263538 TGATTCACAGGATTTTCAAAATGAAAG 57.736 29.630 0.00 0.00 45.77 2.62
2328 2498 9.480053 GATTCACAGGATTTTCAAAATGAAAGA 57.520 29.630 0.00 0.00 45.77 2.52
2329 2499 9.835389 ATTCACAGGATTTTCAAAATGAAAGAA 57.165 25.926 0.00 0.00 45.77 2.52
2330 2500 9.835389 TTCACAGGATTTTCAAAATGAAAGAAT 57.165 25.926 0.00 0.00 45.77 2.40
2333 2503 9.933723 ACAGGATTTTCAAAATGAAAGAATAGG 57.066 29.630 0.00 0.39 45.77 2.57
2341 2511 8.816640 TCAAAATGAAAGAATAGGAAAAGTGC 57.183 30.769 0.00 0.00 0.00 4.40
2342 2512 8.420222 TCAAAATGAAAGAATAGGAAAAGTGCA 58.580 29.630 0.00 0.00 0.00 4.57
2343 2513 8.706035 CAAAATGAAAGAATAGGAAAAGTGCAG 58.294 33.333 0.00 0.00 0.00 4.41
2344 2514 5.964958 TGAAAGAATAGGAAAAGTGCAGG 57.035 39.130 0.00 0.00 0.00 4.85
2345 2515 5.630121 TGAAAGAATAGGAAAAGTGCAGGA 58.370 37.500 0.00 0.00 0.00 3.86
2346 2516 6.068010 TGAAAGAATAGGAAAAGTGCAGGAA 58.932 36.000 0.00 0.00 0.00 3.36
2347 2517 6.721208 TGAAAGAATAGGAAAAGTGCAGGAAT 59.279 34.615 0.00 0.00 0.00 3.01
2348 2518 7.888021 TGAAAGAATAGGAAAAGTGCAGGAATA 59.112 33.333 0.00 0.00 0.00 1.75
2349 2519 7.872113 AAGAATAGGAAAAGTGCAGGAATAG 57.128 36.000 0.00 0.00 0.00 1.73
2350 2520 6.360618 AGAATAGGAAAAGTGCAGGAATAGG 58.639 40.000 0.00 0.00 0.00 2.57
2351 2521 3.372440 AGGAAAAGTGCAGGAATAGGG 57.628 47.619 0.00 0.00 0.00 3.53
2352 2522 2.649816 AGGAAAAGTGCAGGAATAGGGT 59.350 45.455 0.00 0.00 0.00 4.34
2353 2523 2.755103 GGAAAAGTGCAGGAATAGGGTG 59.245 50.000 0.00 0.00 0.00 4.61
2354 2524 3.561313 GGAAAAGTGCAGGAATAGGGTGA 60.561 47.826 0.00 0.00 0.00 4.02
2355 2525 2.789409 AAGTGCAGGAATAGGGTGAC 57.211 50.000 0.00 0.00 0.00 3.67
2356 2526 1.656587 AGTGCAGGAATAGGGTGACA 58.343 50.000 0.00 0.00 0.00 3.58
2357 2527 2.200081 AGTGCAGGAATAGGGTGACAT 58.800 47.619 0.00 0.00 0.00 3.06
2358 2528 2.092753 AGTGCAGGAATAGGGTGACATG 60.093 50.000 0.00 0.00 0.00 3.21
2359 2529 1.915489 TGCAGGAATAGGGTGACATGT 59.085 47.619 0.00 0.00 0.00 3.21
2360 2530 2.092968 TGCAGGAATAGGGTGACATGTC 60.093 50.000 19.27 19.27 0.00 3.06
2361 2531 2.746472 GCAGGAATAGGGTGACATGTCC 60.746 54.545 22.85 13.66 31.81 4.02
2362 2532 2.127708 AGGAATAGGGTGACATGTCCC 58.872 52.381 22.85 20.96 43.71 4.46
2363 2533 1.843851 GGAATAGGGTGACATGTCCCA 59.156 52.381 25.45 13.42 45.64 4.37
2364 2534 2.443255 GGAATAGGGTGACATGTCCCAT 59.557 50.000 25.45 22.63 45.64 4.00
2365 2535 3.650942 GGAATAGGGTGACATGTCCCATA 59.349 47.826 25.45 23.65 45.64 2.74
2366 2536 4.263068 GGAATAGGGTGACATGTCCCATAG 60.263 50.000 25.45 0.00 45.64 2.23
2367 2537 2.270434 AGGGTGACATGTCCCATAGT 57.730 50.000 25.45 11.03 45.64 2.12
2368 2538 3.414759 AGGGTGACATGTCCCATAGTA 57.585 47.619 25.45 5.84 45.64 1.82
2369 2539 3.941629 AGGGTGACATGTCCCATAGTAT 58.058 45.455 25.45 5.22 45.64 2.12
2370 2540 3.904339 AGGGTGACATGTCCCATAGTATC 59.096 47.826 25.45 8.30 45.64 2.24
2371 2541 3.008049 GGGTGACATGTCCCATAGTATCC 59.992 52.174 25.45 12.79 42.95 2.59
2372 2542 3.904339 GGTGACATGTCCCATAGTATCCT 59.096 47.826 22.85 0.00 0.00 3.24
2373 2543 5.084519 GGTGACATGTCCCATAGTATCCTA 58.915 45.833 22.85 0.00 0.00 2.94
2374 2544 5.047235 GGTGACATGTCCCATAGTATCCTAC 60.047 48.000 22.85 9.16 0.00 3.18
2375 2545 5.538813 GTGACATGTCCCATAGTATCCTACA 59.461 44.000 22.85 0.00 0.00 2.74
2376 2546 5.775195 TGACATGTCCCATAGTATCCTACAG 59.225 44.000 22.85 0.00 0.00 2.74
2377 2547 5.087323 ACATGTCCCATAGTATCCTACAGG 58.913 45.833 0.00 0.00 0.00 4.00
2394 2564 7.885297 TCCTACAGGATTTGAAAGAATGTTTG 58.115 34.615 0.00 0.00 39.78 2.93
2395 2565 7.723616 TCCTACAGGATTTGAAAGAATGTTTGA 59.276 33.333 0.00 0.00 39.78 2.69
2396 2566 8.526147 CCTACAGGATTTGAAAGAATGTTTGAT 58.474 33.333 0.00 0.00 37.39 2.57
2399 2569 8.031277 ACAGGATTTGAAAGAATGTTTGATAGC 58.969 33.333 0.00 0.00 0.00 2.97
2400 2570 8.030692 CAGGATTTGAAAGAATGTTTGATAGCA 58.969 33.333 0.00 0.00 0.00 3.49
2401 2571 8.755977 AGGATTTGAAAGAATGTTTGATAGCAT 58.244 29.630 0.00 0.00 0.00 3.79
2402 2572 9.374838 GGATTTGAAAGAATGTTTGATAGCATT 57.625 29.630 0.00 0.00 37.94 3.56
2415 2585 9.474920 TGTTTGATAGCATTAGAAAAACAAAGG 57.525 29.630 0.00 0.00 34.22 3.11
2416 2586 9.691362 GTTTGATAGCATTAGAAAAACAAAGGA 57.309 29.630 0.00 0.00 0.00 3.36
2435 2605 9.807921 ACAAAGGAATTCTATAAAGAGGTTTGA 57.192 29.630 5.23 0.00 31.96 2.69
2438 2608 9.454859 AAGGAATTCTATAAAGAGGTTTGAGTG 57.545 33.333 5.23 0.00 31.96 3.51
2439 2609 8.049721 AGGAATTCTATAAAGAGGTTTGAGTGG 58.950 37.037 5.23 0.00 31.96 4.00
2440 2610 8.047310 GGAATTCTATAAAGAGGTTTGAGTGGA 58.953 37.037 5.23 0.00 31.96 4.02
2441 2611 9.620259 GAATTCTATAAAGAGGTTTGAGTGGAT 57.380 33.333 0.00 0.00 31.96 3.41
2442 2612 8.970859 ATTCTATAAAGAGGTTTGAGTGGATG 57.029 34.615 0.00 0.00 31.96 3.51
2443 2613 6.889198 TCTATAAAGAGGTTTGAGTGGATGG 58.111 40.000 0.00 0.00 0.00 3.51
2444 2614 5.779241 ATAAAGAGGTTTGAGTGGATGGA 57.221 39.130 0.00 0.00 0.00 3.41
2445 2615 4.453480 AAAGAGGTTTGAGTGGATGGAA 57.547 40.909 0.00 0.00 0.00 3.53
2446 2616 4.453480 AAGAGGTTTGAGTGGATGGAAA 57.547 40.909 0.00 0.00 0.00 3.13
2447 2617 4.664688 AGAGGTTTGAGTGGATGGAAAT 57.335 40.909 0.00 0.00 0.00 2.17
2448 2618 5.003096 AGAGGTTTGAGTGGATGGAAATT 57.997 39.130 0.00 0.00 0.00 1.82
2449 2619 5.397360 AGAGGTTTGAGTGGATGGAAATTT 58.603 37.500 0.00 0.00 0.00 1.82
2450 2620 5.840693 AGAGGTTTGAGTGGATGGAAATTTT 59.159 36.000 0.00 0.00 0.00 1.82
2451 2621 6.015095 AGAGGTTTGAGTGGATGGAAATTTTC 60.015 38.462 0.24 0.24 0.00 2.29
2468 2638 9.974980 GGAAATTTTCCTTCAAAATGTAGTACA 57.025 29.630 19.01 5.24 42.86 2.90
2473 2643 9.757227 TTTTCCTTCAAAATGTAGTACAAATGG 57.243 29.630 7.16 3.77 0.00 3.16
2474 2644 8.698973 TTCCTTCAAAATGTAGTACAAATGGA 57.301 30.769 7.16 5.89 0.00 3.41
2475 2645 8.877864 TCCTTCAAAATGTAGTACAAATGGAT 57.122 30.769 7.16 0.00 0.00 3.41
2476 2646 8.956426 TCCTTCAAAATGTAGTACAAATGGATC 58.044 33.333 7.16 0.00 0.00 3.36
2477 2647 8.739039 CCTTCAAAATGTAGTACAAATGGATCA 58.261 33.333 7.16 0.00 0.00 2.92
2486 2656 9.913310 TGTAGTACAAATGGATCATATGGAAAA 57.087 29.630 0.00 0.00 0.00 2.29
2497 2667 9.934784 TGGATCATATGGAAAAATTTCTAAGGA 57.065 29.630 2.13 1.06 37.35 3.36
2501 2671 8.641541 TCATATGGAAAAATTTCTAAGGATGCC 58.358 33.333 2.13 0.00 37.35 4.40
2502 2672 6.872585 ATGGAAAAATTTCTAAGGATGCCA 57.127 33.333 5.91 0.00 37.35 4.92
2503 2673 6.678568 TGGAAAAATTTCTAAGGATGCCAA 57.321 33.333 5.91 0.00 37.35 4.52
2504 2674 7.256494 TGGAAAAATTTCTAAGGATGCCAAT 57.744 32.000 5.91 0.00 37.35 3.16
2505 2675 7.330262 TGGAAAAATTTCTAAGGATGCCAATC 58.670 34.615 5.91 0.00 37.35 2.67
2506 2676 6.763135 GGAAAAATTTCTAAGGATGCCAATCC 59.237 38.462 5.91 0.00 43.24 3.01
2508 2678 8.695456 GAAAAATTTCTAAGGATGCCAATCCTA 58.305 33.333 7.67 0.00 45.91 2.94
2519 2689 4.898829 TGCCAATCCTATGAATCAAACG 57.101 40.909 0.00 0.00 0.00 3.60
2520 2690 4.522114 TGCCAATCCTATGAATCAAACGA 58.478 39.130 0.00 0.00 0.00 3.85
2521 2691 4.576053 TGCCAATCCTATGAATCAAACGAG 59.424 41.667 0.00 0.00 0.00 4.18
2522 2692 4.576463 GCCAATCCTATGAATCAAACGAGT 59.424 41.667 0.00 0.00 0.00 4.18
2523 2693 5.758296 GCCAATCCTATGAATCAAACGAGTA 59.242 40.000 0.00 0.00 0.00 2.59
2524 2694 6.428159 GCCAATCCTATGAATCAAACGAGTAT 59.572 38.462 0.00 0.00 0.00 2.12
2525 2695 7.360438 GCCAATCCTATGAATCAAACGAGTATC 60.360 40.741 0.00 0.00 0.00 2.24
2526 2696 7.657354 CCAATCCTATGAATCAAACGAGTATCA 59.343 37.037 0.00 0.00 33.17 2.15
2527 2697 8.491152 CAATCCTATGAATCAAACGAGTATCAC 58.509 37.037 0.00 0.00 33.17 3.06
2528 2698 7.107639 TCCTATGAATCAAACGAGTATCACA 57.892 36.000 0.00 0.00 33.17 3.58
2529 2699 7.203218 TCCTATGAATCAAACGAGTATCACAG 58.797 38.462 0.00 0.00 33.17 3.66
2530 2700 6.422100 CCTATGAATCAAACGAGTATCACAGG 59.578 42.308 0.00 0.00 33.17 4.00
2531 2701 5.400066 TGAATCAAACGAGTATCACAGGA 57.600 39.130 0.00 0.00 33.17 3.86
2532 2702 5.789521 TGAATCAAACGAGTATCACAGGAA 58.210 37.500 0.00 0.00 33.17 3.36
2533 2703 6.227522 TGAATCAAACGAGTATCACAGGAAA 58.772 36.000 0.00 0.00 33.17 3.13
2534 2704 6.708502 TGAATCAAACGAGTATCACAGGAAAA 59.291 34.615 0.00 0.00 33.17 2.29
2535 2705 7.227711 TGAATCAAACGAGTATCACAGGAAAAA 59.772 33.333 0.00 0.00 33.17 1.94
2536 2706 7.687941 ATCAAACGAGTATCACAGGAAAAAT 57.312 32.000 0.00 0.00 33.17 1.82
2537 2707 7.504924 TCAAACGAGTATCACAGGAAAAATT 57.495 32.000 0.00 0.00 33.17 1.82
2538 2708 7.581476 TCAAACGAGTATCACAGGAAAAATTC 58.419 34.615 0.00 0.00 33.17 2.17
2539 2709 6.496338 AACGAGTATCACAGGAAAAATTCC 57.504 37.500 0.75 0.75 42.55 3.01
2570 2740 9.875691 AGTTTAAATCCTTCAAAAATCCTATGC 57.124 29.630 0.00 0.00 0.00 3.14
2571 2741 9.651913 GTTTAAATCCTTCAAAAATCCTATGCA 57.348 29.630 0.00 0.00 0.00 3.96
2575 2745 8.953368 AATCCTTCAAAAATCCTATGCAATTC 57.047 30.769 0.00 0.00 0.00 2.17
2576 2746 7.722949 TCCTTCAAAAATCCTATGCAATTCT 57.277 32.000 0.00 0.00 0.00 2.40
2577 2747 8.137745 TCCTTCAAAAATCCTATGCAATTCTT 57.862 30.769 0.00 0.00 0.00 2.52
2578 2748 8.596293 TCCTTCAAAAATCCTATGCAATTCTTT 58.404 29.630 0.00 0.00 0.00 2.52
2579 2749 9.223099 CCTTCAAAAATCCTATGCAATTCTTTT 57.777 29.630 0.00 0.00 0.00 2.27
2581 2751 9.775854 TTCAAAAATCCTATGCAATTCTTTTGA 57.224 25.926 15.13 15.13 34.27 2.69
2582 2752 9.775854 TCAAAAATCCTATGCAATTCTTTTGAA 57.224 25.926 16.06 0.00 43.30 2.69
2592 2762 7.481275 TGCAATTCTTTTGAATCAAAGGAAC 57.519 32.000 27.61 18.57 46.49 3.62
2593 2763 6.482973 TGCAATTCTTTTGAATCAAAGGAACC 59.517 34.615 27.61 20.34 46.49 3.62
2594 2764 6.073058 GCAATTCTTTTGAATCAAAGGAACCC 60.073 38.462 27.61 17.69 46.49 4.11
2595 2765 7.219322 CAATTCTTTTGAATCAAAGGAACCCT 58.781 34.615 27.61 16.28 46.49 4.34
2596 2766 6.806668 TTCTTTTGAATCAAAGGAACCCTT 57.193 33.333 23.45 0.00 41.88 3.95
2597 2767 7.906199 TTCTTTTGAATCAAAGGAACCCTTA 57.094 32.000 23.45 6.41 41.88 2.69
2598 2768 7.524717 TCTTTTGAATCAAAGGAACCCTTAG 57.475 36.000 16.53 5.26 43.92 2.18
2643 2813 5.514136 CCCGCCAAAGGAAGACCAATATATA 60.514 44.000 0.00 0.00 38.94 0.86
2888 3060 2.767505 CAGTGGCTTCGGTAGAAAACT 58.232 47.619 0.00 0.00 35.71 2.66
2916 3088 5.061179 GTGGTGTGGGTTGTCATATATACC 58.939 45.833 0.00 0.00 0.00 2.73
3066 3251 7.463515 CGCACGTACATTTTCATGTTCTATGTA 60.464 37.037 0.00 1.22 41.16 2.29
3070 3255 8.193250 GTACATTTTCATGTTCTATGTACGGT 57.807 34.615 18.08 0.00 41.16 4.83
3207 3392 9.936759 AGGCAAAATAAAAAGATATTTTTCCGA 57.063 25.926 13.74 0.00 45.35 4.55
3257 3445 4.739716 GTGAACATGCTCACGTGAAATTTT 59.260 37.500 20.49 14.52 36.64 1.82
3313 3504 6.706270 TGCTTAAAATGCATTTTTAAACCGGA 59.294 30.769 35.18 17.10 44.86 5.14
3427 3620 9.736023 ATTTGTAAGTTCATCAAAAGTCTGAAC 57.264 29.630 6.55 6.55 45.75 3.18
3531 3724 8.286800 ACTGATTCGTTTTGTCATTTCGATTTA 58.713 29.630 0.00 0.00 0.00 1.40
3564 3765 6.548622 TCACATGTCCTTACCTAGGTGTATAC 59.451 42.308 25.33 16.61 45.03 1.47
3594 3795 2.820197 GACTCGCTTTCCCCATCTTTTT 59.180 45.455 0.00 0.00 0.00 1.94
3599 3800 2.906389 GCTTTCCCCATCTTTTTCCCTT 59.094 45.455 0.00 0.00 0.00 3.95
3609 3810 0.467290 TTTTTCCCTTGCCTCGCACT 60.467 50.000 0.00 0.00 38.71 4.40
3701 3910 6.151648 TGGATCTTTGAACTCATGGAATCAAC 59.848 38.462 7.26 0.00 0.00 3.18
3703 3912 6.957920 TCTTTGAACTCATGGAATCAACAA 57.042 33.333 7.26 0.00 0.00 2.83
3717 3926 6.149308 TGGAATCAACAATGTACATGAGTGAC 59.851 38.462 9.63 2.81 0.00 3.67
3760 3969 4.135747 GCTTGAGGAAGAAGCTCTATGT 57.864 45.455 0.00 0.00 42.21 2.29
3817 4026 0.595567 AATGCGCTGCACAAACACAG 60.596 50.000 9.73 0.00 43.04 3.66
3828 4037 6.236017 TGCACAAACACAGCTAATAACTAC 57.764 37.500 0.00 0.00 0.00 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 2.238521 GTGCTTCCCCTGACAAAATGA 58.761 47.619 0.00 0.00 0.00 2.57
105 106 1.135286 GGCTGCTTACAAGTTGATGCC 60.135 52.381 10.54 9.32 0.00 4.40
110 111 1.394917 CGCTAGGCTGCTTACAAGTTG 59.605 52.381 0.00 0.00 0.00 3.16
129 137 3.893720 ACAAACACTCTCGGTTACTACG 58.106 45.455 0.00 0.00 0.00 3.51
130 138 5.527033 AGAACAAACACTCTCGGTTACTAC 58.473 41.667 0.00 0.00 0.00 2.73
131 139 5.533903 AGAGAACAAACACTCTCGGTTACTA 59.466 40.000 0.00 0.00 42.46 1.82
132 140 4.341520 AGAGAACAAACACTCTCGGTTACT 59.658 41.667 0.00 0.00 42.46 2.24
133 141 4.444720 CAGAGAACAAACACTCTCGGTTAC 59.555 45.833 0.00 0.00 42.46 2.50
134 142 4.098960 ACAGAGAACAAACACTCTCGGTTA 59.901 41.667 0.00 0.00 42.18 2.85
135 143 3.118738 ACAGAGAACAAACACTCTCGGTT 60.119 43.478 0.00 0.00 42.18 4.44
136 144 2.431057 ACAGAGAACAAACACTCTCGGT 59.569 45.455 0.00 0.00 42.46 4.69
137 145 2.797156 CACAGAGAACAAACACTCTCGG 59.203 50.000 0.00 0.00 42.46 4.63
138 146 3.243877 CACACAGAGAACAAACACTCTCG 59.756 47.826 0.00 0.00 42.46 4.04
163 171 3.517901 TCCAACCAATAGAGATCCAACGT 59.482 43.478 0.00 0.00 0.00 3.99
217 233 1.007387 GCCACTTTGCCAGGTTTCG 60.007 57.895 0.00 0.00 0.00 3.46
219 235 0.908198 TTTGCCACTTTGCCAGGTTT 59.092 45.000 0.00 0.00 0.00 3.27
220 236 1.130777 ATTTGCCACTTTGCCAGGTT 58.869 45.000 0.00 0.00 0.00 3.50
224 240 3.737850 CCTTTTATTTGCCACTTTGCCA 58.262 40.909 0.00 0.00 0.00 4.92
225 241 2.483877 GCCTTTTATTTGCCACTTTGCC 59.516 45.455 0.00 0.00 0.00 4.52
226 242 2.157474 CGCCTTTTATTTGCCACTTTGC 59.843 45.455 0.00 0.00 0.00 3.68
227 243 3.648009 TCGCCTTTTATTTGCCACTTTG 58.352 40.909 0.00 0.00 0.00 2.77
228 244 4.329462 TTCGCCTTTTATTTGCCACTTT 57.671 36.364 0.00 0.00 0.00 2.66
229 245 4.220602 AGATTCGCCTTTTATTTGCCACTT 59.779 37.500 0.00 0.00 0.00 3.16
230 246 3.763897 AGATTCGCCTTTTATTTGCCACT 59.236 39.130 0.00 0.00 0.00 4.00
231 247 4.105486 GAGATTCGCCTTTTATTTGCCAC 58.895 43.478 0.00 0.00 0.00 5.01
246 262 1.269309 GGAGATGGTCGGTGAGATTCG 60.269 57.143 0.00 0.00 0.00 3.34
254 270 2.758737 GGACGGGAGATGGTCGGT 60.759 66.667 0.00 0.00 33.99 4.69
268 284 2.415512 GCACTGTTAGATTGAACGGGAC 59.584 50.000 0.62 0.00 39.59 4.46
325 341 6.263842 TGGATTGAACTTTGGATATCTCATGC 59.736 38.462 2.05 0.00 0.00 4.06
348 364 7.647715 GTGTATGGGAAATAAATTTGACGATGG 59.352 37.037 0.00 0.00 0.00 3.51
381 397 2.014335 TCGTTCATGCACTCCATCTG 57.986 50.000 0.00 0.00 29.71 2.90
402 418 1.065997 AAACTGCCCCTAGGGTGTGT 61.066 55.000 26.66 17.43 46.51 3.72
420 436 7.041372 GCTAACAAACTATCTGACCAGTTTCAA 60.041 37.037 13.45 5.01 41.78 2.69
525 541 6.094048 TGTTTGCTTTCTCCTATACATTGCTC 59.906 38.462 0.00 0.00 0.00 4.26
640 666 5.313280 TGTCCTAAATGTAAAGGGTGTGT 57.687 39.130 0.00 0.00 33.40 3.72
793 819 2.741092 GAGTGGAGGGTGCGTCAA 59.259 61.111 0.00 0.00 0.00 3.18
847 875 2.354510 TCAACATCCCGATTGATTTCGC 59.645 45.455 0.00 0.00 37.80 4.70
852 880 4.453478 CGATGATTCAACATCCCGATTGAT 59.547 41.667 0.00 0.00 42.29 2.57
853 881 3.809279 CGATGATTCAACATCCCGATTGA 59.191 43.478 0.00 0.00 42.29 2.57
855 883 3.141398 CCGATGATTCAACATCCCGATT 58.859 45.455 0.00 0.00 42.29 3.34
859 887 2.104792 TCTCCCGATGATTCAACATCCC 59.895 50.000 0.00 0.00 42.29 3.85
886 927 3.607987 CGCCGAGTTGACGCGATC 61.608 66.667 15.93 7.50 41.67 3.69
991 1038 3.945434 CATCGCCATGCCACTCGC 61.945 66.667 0.00 0.00 38.31 5.03
1122 1169 0.824109 TGTAGACTCCGGGCTTGATG 59.176 55.000 0.00 0.00 0.00 3.07
1149 1196 4.714802 TCCCGTATCAGAATTCAGAAGGAA 59.285 41.667 16.46 0.50 40.46 3.36
1150 1197 4.286707 TCCCGTATCAGAATTCAGAAGGA 58.713 43.478 16.46 12.16 0.00 3.36
1166 1229 5.221067 CGTACTGTCTACTAGTACTCCCGTA 60.221 48.000 0.00 0.00 45.17 4.02
1167 1230 4.440802 CGTACTGTCTACTAGTACTCCCGT 60.441 50.000 0.00 0.00 45.17 5.28
1168 1231 4.047822 CGTACTGTCTACTAGTACTCCCG 58.952 52.174 0.00 0.00 45.17 5.14
1169 1232 4.808364 CACGTACTGTCTACTAGTACTCCC 59.192 50.000 0.00 0.00 45.17 4.30
1170 1233 4.808364 CCACGTACTGTCTACTAGTACTCC 59.192 50.000 0.00 0.00 45.17 3.85
1173 1236 4.932200 ACACCACGTACTGTCTACTAGTAC 59.068 45.833 0.00 0.00 44.36 2.73
1174 1237 4.931601 CACACCACGTACTGTCTACTAGTA 59.068 45.833 1.89 1.89 0.00 1.82
1175 1238 3.750130 CACACCACGTACTGTCTACTAGT 59.250 47.826 0.00 0.00 0.00 2.57
1176 1239 3.126514 CCACACCACGTACTGTCTACTAG 59.873 52.174 0.00 0.00 0.00 2.57
1177 1240 3.076621 CCACACCACGTACTGTCTACTA 58.923 50.000 0.00 0.00 0.00 1.82
1178 1241 1.884579 CCACACCACGTACTGTCTACT 59.115 52.381 0.00 0.00 0.00 2.57
1179 1242 1.610522 ACCACACCACGTACTGTCTAC 59.389 52.381 0.00 0.00 0.00 2.59
1180 1243 1.610038 CACCACACCACGTACTGTCTA 59.390 52.381 0.00 0.00 0.00 2.59
1181 1244 0.387929 CACCACACCACGTACTGTCT 59.612 55.000 0.00 0.00 0.00 3.41
1182 1245 1.219522 GCACCACACCACGTACTGTC 61.220 60.000 0.00 0.00 0.00 3.51
1183 1246 1.227438 GCACCACACCACGTACTGT 60.227 57.895 0.00 0.00 0.00 3.55
1184 1247 0.602638 ATGCACCACACCACGTACTG 60.603 55.000 0.00 0.00 0.00 2.74
1185 1248 0.602638 CATGCACCACACCACGTACT 60.603 55.000 0.00 0.00 0.00 2.73
1186 1249 1.866237 CATGCACCACACCACGTAC 59.134 57.895 0.00 0.00 0.00 3.67
1217 1280 3.973206 TCTCCCTGCAACGAAAGATTA 57.027 42.857 0.00 0.00 0.00 1.75
1319 1382 3.062466 TGTCGGTCGAGAGCCAGG 61.062 66.667 0.00 0.00 0.00 4.45
1324 1387 1.507174 GGGAAGTGTCGGTCGAGAG 59.493 63.158 0.00 0.00 0.00 3.20
1326 1389 0.679002 TAGGGGAAGTGTCGGTCGAG 60.679 60.000 0.00 0.00 0.00 4.04
1331 1394 1.980772 ACGGTAGGGGAAGTGTCGG 60.981 63.158 0.00 0.00 0.00 4.79
1421 1484 1.013005 CCTCGCTCTCTGTGTGCAAG 61.013 60.000 0.00 0.00 35.11 4.01
1427 1490 2.505777 CGCACCTCGCTCTCTGTG 60.506 66.667 0.00 0.00 39.08 3.66
1441 1504 1.087202 AGAAACTGTCAACACGCGCA 61.087 50.000 5.73 0.00 0.00 6.09
1465 1528 5.616204 CGTGTTCTAAAACCCCGAGAAAATC 60.616 44.000 0.00 0.00 34.28 2.17
1506 1569 3.842923 CTCTCACCGCGATGGCCT 61.843 66.667 8.23 0.00 43.94 5.19
1681 1747 2.365941 TGGTGAGAACGGTGAACATGTA 59.634 45.455 0.00 0.00 0.00 2.29
1682 1748 1.140052 TGGTGAGAACGGTGAACATGT 59.860 47.619 0.00 0.00 0.00 3.21
1683 1749 1.800586 CTGGTGAGAACGGTGAACATG 59.199 52.381 0.00 0.00 0.00 3.21
1748 1916 1.734465 GCCATTCAAACCTCTCTCGTG 59.266 52.381 0.00 0.00 0.00 4.35
1756 1924 1.176527 CATGACCGCCATTCAAACCT 58.823 50.000 0.00 0.00 31.94 3.50
1757 1925 0.887933 ACATGACCGCCATTCAAACC 59.112 50.000 0.00 0.00 31.94 3.27
1758 1926 3.840890 TTACATGACCGCCATTCAAAC 57.159 42.857 0.00 0.00 31.94 2.93
1759 1927 4.578516 CCTATTACATGACCGCCATTCAAA 59.421 41.667 0.00 0.00 31.94 2.69
1760 1928 4.133820 CCTATTACATGACCGCCATTCAA 58.866 43.478 0.00 0.00 31.94 2.69
1761 1929 3.389656 TCCTATTACATGACCGCCATTCA 59.610 43.478 0.00 0.00 31.94 2.57
1762 1930 4.002906 TCCTATTACATGACCGCCATTC 57.997 45.455 0.00 0.00 31.94 2.67
1763 1931 4.640771 ATCCTATTACATGACCGCCATT 57.359 40.909 0.00 0.00 31.94 3.16
1764 1932 5.023452 TCTATCCTATTACATGACCGCCAT 58.977 41.667 0.00 0.00 35.44 4.40
1765 1933 4.219944 GTCTATCCTATTACATGACCGCCA 59.780 45.833 0.00 0.00 0.00 5.69
1766 1934 4.219944 TGTCTATCCTATTACATGACCGCC 59.780 45.833 0.00 0.00 0.00 6.13
1767 1935 5.386958 TGTCTATCCTATTACATGACCGC 57.613 43.478 0.00 0.00 0.00 5.68
1774 1942 8.857098 GGAACACTACATGTCTATCCTATTACA 58.143 37.037 0.00 0.00 42.31 2.41
1775 1943 9.080097 AGGAACACTACATGTCTATCCTATTAC 57.920 37.037 0.00 0.00 42.12 1.89
1779 1947 9.078990 CAATAGGAACACTACATGTCTATCCTA 57.921 37.037 19.53 19.53 45.86 2.94
1780 1948 7.565398 ACAATAGGAACACTACATGTCTATCCT 59.435 37.037 17.40 17.40 44.76 3.24
1781 1949 7.653713 CACAATAGGAACACTACATGTCTATCC 59.346 40.741 0.00 4.82 42.31 2.59
1782 1950 8.198109 ACACAATAGGAACACTACATGTCTATC 58.802 37.037 0.00 0.00 42.31 2.08
1783 1951 8.079211 ACACAATAGGAACACTACATGTCTAT 57.921 34.615 0.00 0.00 42.31 1.98
1784 1952 7.476540 ACACAATAGGAACACTACATGTCTA 57.523 36.000 0.00 0.00 42.31 2.59
1785 1953 6.360370 ACACAATAGGAACACTACATGTCT 57.640 37.500 0.00 0.00 42.31 3.41
1786 1954 7.298122 CAAACACAATAGGAACACTACATGTC 58.702 38.462 0.00 0.00 42.31 3.06
1787 1955 6.293955 GCAAACACAATAGGAACACTACATGT 60.294 38.462 2.69 2.69 46.42 3.21
1788 1956 6.086222 GCAAACACAATAGGAACACTACATG 58.914 40.000 0.00 0.00 33.70 3.21
1789 1957 5.183140 GGCAAACACAATAGGAACACTACAT 59.817 40.000 0.00 0.00 33.70 2.29
1790 1958 4.517453 GGCAAACACAATAGGAACACTACA 59.483 41.667 0.00 0.00 33.70 2.74
1791 1959 4.517453 TGGCAAACACAATAGGAACACTAC 59.483 41.667 0.00 0.00 33.70 2.73
1792 1960 4.720046 TGGCAAACACAATAGGAACACTA 58.280 39.130 0.00 0.00 35.80 2.74
1793 1961 3.561143 TGGCAAACACAATAGGAACACT 58.439 40.909 0.00 0.00 0.00 3.55
1794 1962 3.857010 GCTGGCAAACACAATAGGAACAC 60.857 47.826 0.00 0.00 0.00 3.32
1795 1963 2.295909 GCTGGCAAACACAATAGGAACA 59.704 45.455 0.00 0.00 0.00 3.18
1796 1964 2.352715 GGCTGGCAAACACAATAGGAAC 60.353 50.000 0.00 0.00 0.00 3.62
1797 1965 1.892474 GGCTGGCAAACACAATAGGAA 59.108 47.619 0.00 0.00 0.00 3.36
1798 1966 1.544724 GGCTGGCAAACACAATAGGA 58.455 50.000 0.00 0.00 0.00 2.94
1799 1967 0.171007 CGGCTGGCAAACACAATAGG 59.829 55.000 1.08 0.00 0.00 2.57
1800 1968 0.171007 CCGGCTGGCAAACACAATAG 59.829 55.000 0.00 0.00 0.00 1.73
1801 1969 0.538516 ACCGGCTGGCAAACACAATA 60.539 50.000 12.89 0.00 39.70 1.90
1802 1970 1.398958 AACCGGCTGGCAAACACAAT 61.399 50.000 12.89 0.00 39.70 2.71
1803 1971 2.055042 AACCGGCTGGCAAACACAA 61.055 52.632 12.89 0.00 39.70 3.33
1804 1972 2.441164 AACCGGCTGGCAAACACA 60.441 55.556 12.89 0.00 39.70 3.72
1805 1973 2.027460 CAACCGGCTGGCAAACAC 59.973 61.111 12.89 0.00 39.70 3.32
1806 1974 2.441164 ACAACCGGCTGGCAAACA 60.441 55.556 12.89 0.00 39.70 2.83
1807 1975 2.027460 CACAACCGGCTGGCAAAC 59.973 61.111 12.89 0.00 39.70 2.93
1808 1976 3.222855 CCACAACCGGCTGGCAAA 61.223 61.111 12.89 0.00 39.70 3.68
1816 1984 0.744281 AAACTCAAAGCCACAACCGG 59.256 50.000 0.00 0.00 0.00 5.28
1817 1985 2.577449 AAAACTCAAAGCCACAACCG 57.423 45.000 0.00 0.00 0.00 4.44
1818 1986 3.068165 AGCTAAAACTCAAAGCCACAACC 59.932 43.478 0.00 0.00 36.92 3.77
1819 1987 4.036852 AGAGCTAAAACTCAAAGCCACAAC 59.963 41.667 0.00 0.00 39.26 3.32
1820 1988 4.207165 AGAGCTAAAACTCAAAGCCACAA 58.793 39.130 0.00 0.00 39.26 3.33
1821 1989 3.820557 AGAGCTAAAACTCAAAGCCACA 58.179 40.909 0.00 0.00 39.26 4.17
1822 1990 4.837896 AAGAGCTAAAACTCAAAGCCAC 57.162 40.909 0.00 0.00 39.26 5.01
1823 1991 4.024048 CGAAAGAGCTAAAACTCAAAGCCA 60.024 41.667 0.00 0.00 39.26 4.75
1824 1992 4.213482 TCGAAAGAGCTAAAACTCAAAGCC 59.787 41.667 0.00 0.00 39.26 4.35
1825 1993 5.344207 TCGAAAGAGCTAAAACTCAAAGC 57.656 39.130 0.00 0.00 39.26 3.51
1840 2008 7.480542 GCGAAAATAAACAATAAGCTCGAAAGA 59.519 33.333 0.00 0.00 39.12 2.52
1841 2009 7.270365 TGCGAAAATAAACAATAAGCTCGAAAG 59.730 33.333 0.00 0.00 0.00 2.62
1842 2010 7.060174 GTGCGAAAATAAACAATAAGCTCGAAA 59.940 33.333 0.00 0.00 0.00 3.46
1843 2011 6.521821 GTGCGAAAATAAACAATAAGCTCGAA 59.478 34.615 0.00 0.00 0.00 3.71
1844 2012 6.019152 GTGCGAAAATAAACAATAAGCTCGA 58.981 36.000 0.00 0.00 0.00 4.04
1845 2013 5.227184 GGTGCGAAAATAAACAATAAGCTCG 59.773 40.000 0.00 0.00 0.00 5.03
1846 2014 6.322491 AGGTGCGAAAATAAACAATAAGCTC 58.678 36.000 0.00 0.00 0.00 4.09
1847 2015 6.267496 AGGTGCGAAAATAAACAATAAGCT 57.733 33.333 0.00 0.00 0.00 3.74
1848 2016 5.227184 CGAGGTGCGAAAATAAACAATAAGC 59.773 40.000 0.00 0.00 44.57 3.09
1849 2017 6.774717 CGAGGTGCGAAAATAAACAATAAG 57.225 37.500 0.00 0.00 44.57 1.73
1864 2032 0.098200 TCGTCAAGTATCGAGGTGCG 59.902 55.000 0.00 0.00 42.69 5.34
1865 2033 1.132643 AGTCGTCAAGTATCGAGGTGC 59.867 52.381 0.00 0.00 36.76 5.01
1866 2034 3.489180 AAGTCGTCAAGTATCGAGGTG 57.511 47.619 0.00 0.00 36.76 4.00
1867 2035 3.255149 ACAAAGTCGTCAAGTATCGAGGT 59.745 43.478 0.00 0.00 36.76 3.85
1868 2036 3.834610 ACAAAGTCGTCAAGTATCGAGG 58.165 45.455 0.00 0.00 36.76 4.63
1869 2037 6.032565 CAGTAACAAAGTCGTCAAGTATCGAG 59.967 42.308 0.00 0.00 36.76 4.04
1870 2038 5.854866 CAGTAACAAAGTCGTCAAGTATCGA 59.145 40.000 0.00 0.00 0.00 3.59
1871 2039 5.060569 CCAGTAACAAAGTCGTCAAGTATCG 59.939 44.000 0.00 0.00 0.00 2.92
1872 2040 6.154445 TCCAGTAACAAAGTCGTCAAGTATC 58.846 40.000 0.00 0.00 0.00 2.24
1873 2041 6.092955 TCCAGTAACAAAGTCGTCAAGTAT 57.907 37.500 0.00 0.00 0.00 2.12
1874 2042 5.518848 TCCAGTAACAAAGTCGTCAAGTA 57.481 39.130 0.00 0.00 0.00 2.24
1875 2043 4.395959 TCCAGTAACAAAGTCGTCAAGT 57.604 40.909 0.00 0.00 0.00 3.16
1876 2044 5.924475 AATCCAGTAACAAAGTCGTCAAG 57.076 39.130 0.00 0.00 0.00 3.02
1877 2045 9.661563 ATTATAATCCAGTAACAAAGTCGTCAA 57.338 29.630 0.00 0.00 0.00 3.18
1878 2046 9.661563 AATTATAATCCAGTAACAAAGTCGTCA 57.338 29.630 0.00 0.00 0.00 4.35
1907 2075 8.867097 AGAAAGATGCATATGGCTCATATTTTT 58.133 29.630 0.00 7.19 45.15 1.94
1908 2076 8.304596 CAGAAAGATGCATATGGCTCATATTTT 58.695 33.333 0.00 8.51 45.15 1.82
1909 2077 7.668469 TCAGAAAGATGCATATGGCTCATATTT 59.332 33.333 11.70 11.70 45.15 1.40
1910 2078 7.173032 TCAGAAAGATGCATATGGCTCATATT 58.827 34.615 0.00 0.73 45.15 1.28
1911 2079 6.718294 TCAGAAAGATGCATATGGCTCATAT 58.282 36.000 0.00 2.82 45.15 1.78
1912 2080 6.117975 TCAGAAAGATGCATATGGCTCATA 57.882 37.500 0.00 0.00 45.15 2.15
1913 2081 4.981812 TCAGAAAGATGCATATGGCTCAT 58.018 39.130 0.00 0.00 45.15 2.90
1914 2082 4.426736 TCAGAAAGATGCATATGGCTCA 57.573 40.909 0.00 0.00 45.15 4.26
1915 2083 5.298197 CATCAGAAAGATGCATATGGCTC 57.702 43.478 0.00 0.00 46.90 4.70
1926 2094 4.273318 GGTTTACCCTGCATCAGAAAGAT 58.727 43.478 0.00 0.00 37.48 2.40
1927 2095 3.686016 GGTTTACCCTGCATCAGAAAGA 58.314 45.455 0.00 0.00 32.44 2.52
1967 2135 5.577860 TGTGCGTTTTTCTTTTCGTTTTT 57.422 30.435 0.00 0.00 0.00 1.94
1968 2136 5.402867 TCTTGTGCGTTTTTCTTTTCGTTTT 59.597 32.000 0.00 0.00 0.00 2.43
1969 2137 4.918583 TCTTGTGCGTTTTTCTTTTCGTTT 59.081 33.333 0.00 0.00 0.00 3.60
1970 2138 4.477780 TCTTGTGCGTTTTTCTTTTCGTT 58.522 34.783 0.00 0.00 0.00 3.85
1971 2139 4.086199 TCTTGTGCGTTTTTCTTTTCGT 57.914 36.364 0.00 0.00 0.00 3.85
1972 2140 3.482110 CCTCTTGTGCGTTTTTCTTTTCG 59.518 43.478 0.00 0.00 0.00 3.46
1973 2141 4.421058 ACCTCTTGTGCGTTTTTCTTTTC 58.579 39.130 0.00 0.00 0.00 2.29
1974 2142 4.450082 ACCTCTTGTGCGTTTTTCTTTT 57.550 36.364 0.00 0.00 0.00 2.27
1975 2143 4.173256 CAACCTCTTGTGCGTTTTTCTTT 58.827 39.130 0.00 0.00 0.00 2.52
1976 2144 3.769536 CAACCTCTTGTGCGTTTTTCTT 58.230 40.909 0.00 0.00 0.00 2.52
1977 2145 2.479560 GCAACCTCTTGTGCGTTTTTCT 60.480 45.455 0.00 0.00 0.00 2.52
1978 2146 1.852280 GCAACCTCTTGTGCGTTTTTC 59.148 47.619 0.00 0.00 0.00 2.29
1979 2147 1.476488 AGCAACCTCTTGTGCGTTTTT 59.524 42.857 0.00 0.00 0.00 1.94
1980 2148 1.102978 AGCAACCTCTTGTGCGTTTT 58.897 45.000 0.00 0.00 0.00 2.43
1981 2149 1.102978 AAGCAACCTCTTGTGCGTTT 58.897 45.000 0.00 0.00 0.00 3.60
1982 2150 1.102978 AAAGCAACCTCTTGTGCGTT 58.897 45.000 0.00 0.00 0.00 4.84
1983 2151 0.381801 CAAAGCAACCTCTTGTGCGT 59.618 50.000 0.00 0.00 0.00 5.24
1984 2152 0.936297 GCAAAGCAACCTCTTGTGCG 60.936 55.000 0.00 0.00 0.00 5.34
1985 2153 0.386838 AGCAAAGCAACCTCTTGTGC 59.613 50.000 0.00 0.00 33.95 4.57
1986 2154 1.866880 GCAGCAAAGCAACCTCTTGTG 60.867 52.381 0.00 0.00 0.00 3.33
1987 2155 0.386838 GCAGCAAAGCAACCTCTTGT 59.613 50.000 0.00 0.00 0.00 3.16
1988 2156 0.319297 GGCAGCAAAGCAACCTCTTG 60.319 55.000 0.00 0.00 35.83 3.02
1989 2157 0.756442 TGGCAGCAAAGCAACCTCTT 60.756 50.000 0.00 0.00 35.83 2.85
1990 2158 0.756442 TTGGCAGCAAAGCAACCTCT 60.756 50.000 0.00 0.00 35.83 3.69
1991 2159 0.319297 CTTGGCAGCAAAGCAACCTC 60.319 55.000 0.00 0.00 35.83 3.85
1992 2160 0.756442 TCTTGGCAGCAAAGCAACCT 60.756 50.000 4.40 0.00 35.83 3.50
1993 2161 0.319405 ATCTTGGCAGCAAAGCAACC 59.681 50.000 4.40 0.00 35.83 3.77
2113 2283 1.402968 GACGAAGCTGTATCCCGTGTA 59.597 52.381 0.00 0.00 33.32 2.90
2254 2424 0.889186 GCGGTGTGGTTCCAGTCATT 60.889 55.000 0.00 0.00 0.00 2.57
2293 2463 2.496899 TCCTGTGAATCAAAGAGGCC 57.503 50.000 1.15 0.00 0.00 5.19
2294 2464 5.047802 TGAAAATCCTGTGAATCAAAGAGGC 60.048 40.000 1.15 0.00 0.00 4.70
2295 2465 6.579666 TGAAAATCCTGTGAATCAAAGAGG 57.420 37.500 1.15 0.05 0.00 3.69
2296 2466 8.876275 TTTTGAAAATCCTGTGAATCAAAGAG 57.124 30.769 1.15 0.00 35.22 2.85
2297 2467 9.263538 CATTTTGAAAATCCTGTGAATCAAAGA 57.736 29.630 1.15 0.00 35.22 2.52
2298 2468 9.263538 TCATTTTGAAAATCCTGTGAATCAAAG 57.736 29.630 0.00 0.00 35.22 2.77
2299 2469 9.610705 TTCATTTTGAAAATCCTGTGAATCAAA 57.389 25.926 0.00 0.00 32.71 2.69
2300 2470 9.610705 TTTCATTTTGAAAATCCTGTGAATCAA 57.389 25.926 0.00 0.00 42.72 2.57
2301 2471 9.263538 CTTTCATTTTGAAAATCCTGTGAATCA 57.736 29.630 0.00 0.00 44.69 2.57
2302 2472 9.480053 TCTTTCATTTTGAAAATCCTGTGAATC 57.520 29.630 0.00 0.00 44.69 2.52
2303 2473 9.835389 TTCTTTCATTTTGAAAATCCTGTGAAT 57.165 25.926 0.00 0.00 44.69 2.57
2304 2474 9.835389 ATTCTTTCATTTTGAAAATCCTGTGAA 57.165 25.926 0.00 0.18 44.69 3.18
2307 2477 9.933723 CCTATTCTTTCATTTTGAAAATCCTGT 57.066 29.630 0.00 0.00 44.69 4.00
2315 2485 9.260002 GCACTTTTCCTATTCTTTCATTTTGAA 57.740 29.630 0.00 0.00 34.03 2.69
2316 2486 8.420222 TGCACTTTTCCTATTCTTTCATTTTGA 58.580 29.630 0.00 0.00 0.00 2.69
2317 2487 8.592105 TGCACTTTTCCTATTCTTTCATTTTG 57.408 30.769 0.00 0.00 0.00 2.44
2318 2488 7.874528 CCTGCACTTTTCCTATTCTTTCATTTT 59.125 33.333 0.00 0.00 0.00 1.82
2319 2489 7.233348 TCCTGCACTTTTCCTATTCTTTCATTT 59.767 33.333 0.00 0.00 0.00 2.32
2320 2490 6.721208 TCCTGCACTTTTCCTATTCTTTCATT 59.279 34.615 0.00 0.00 0.00 2.57
2321 2491 6.248433 TCCTGCACTTTTCCTATTCTTTCAT 58.752 36.000 0.00 0.00 0.00 2.57
2322 2492 5.630121 TCCTGCACTTTTCCTATTCTTTCA 58.370 37.500 0.00 0.00 0.00 2.69
2323 2493 6.575162 TTCCTGCACTTTTCCTATTCTTTC 57.425 37.500 0.00 0.00 0.00 2.62
2324 2494 7.340487 CCTATTCCTGCACTTTTCCTATTCTTT 59.660 37.037 0.00 0.00 0.00 2.52
2325 2495 6.830838 CCTATTCCTGCACTTTTCCTATTCTT 59.169 38.462 0.00 0.00 0.00 2.52
2326 2496 6.360618 CCTATTCCTGCACTTTTCCTATTCT 58.639 40.000 0.00 0.00 0.00 2.40
2327 2497 5.532779 CCCTATTCCTGCACTTTTCCTATTC 59.467 44.000 0.00 0.00 0.00 1.75
2328 2498 5.044105 ACCCTATTCCTGCACTTTTCCTATT 60.044 40.000 0.00 0.00 0.00 1.73
2329 2499 4.478686 ACCCTATTCCTGCACTTTTCCTAT 59.521 41.667 0.00 0.00 0.00 2.57
2330 2500 3.850173 ACCCTATTCCTGCACTTTTCCTA 59.150 43.478 0.00 0.00 0.00 2.94
2331 2501 2.649816 ACCCTATTCCTGCACTTTTCCT 59.350 45.455 0.00 0.00 0.00 3.36
2332 2502 2.755103 CACCCTATTCCTGCACTTTTCC 59.245 50.000 0.00 0.00 0.00 3.13
2333 2503 3.440522 GTCACCCTATTCCTGCACTTTTC 59.559 47.826 0.00 0.00 0.00 2.29
2334 2504 3.181434 TGTCACCCTATTCCTGCACTTTT 60.181 43.478 0.00 0.00 0.00 2.27
2335 2505 2.375174 TGTCACCCTATTCCTGCACTTT 59.625 45.455 0.00 0.00 0.00 2.66
2336 2506 1.985159 TGTCACCCTATTCCTGCACTT 59.015 47.619 0.00 0.00 0.00 3.16
2337 2507 1.656587 TGTCACCCTATTCCTGCACT 58.343 50.000 0.00 0.00 0.00 4.40
2338 2508 2.292267 CATGTCACCCTATTCCTGCAC 58.708 52.381 0.00 0.00 0.00 4.57
2339 2509 1.915489 ACATGTCACCCTATTCCTGCA 59.085 47.619 0.00 0.00 0.00 4.41
2340 2510 2.565841 GACATGTCACCCTATTCCTGC 58.434 52.381 21.07 0.00 0.00 4.85
2341 2511 2.158755 GGGACATGTCACCCTATTCCTG 60.159 54.545 26.47 0.00 42.56 3.86
2342 2512 2.127708 GGGACATGTCACCCTATTCCT 58.872 52.381 26.47 0.00 42.56 3.36
2343 2513 1.843851 TGGGACATGTCACCCTATTCC 59.156 52.381 25.06 14.90 45.74 3.01
2370 2540 7.885297 TCAAACATTCTTTCAAATCCTGTAGG 58.115 34.615 0.00 0.00 0.00 3.18
2373 2543 8.031277 GCTATCAAACATTCTTTCAAATCCTGT 58.969 33.333 0.00 0.00 0.00 4.00
2374 2544 8.030692 TGCTATCAAACATTCTTTCAAATCCTG 58.969 33.333 0.00 0.00 0.00 3.86
2375 2545 8.125978 TGCTATCAAACATTCTTTCAAATCCT 57.874 30.769 0.00 0.00 0.00 3.24
2376 2546 8.937634 ATGCTATCAAACATTCTTTCAAATCC 57.062 30.769 0.00 0.00 0.00 3.01
2389 2559 9.474920 CCTTTGTTTTTCTAATGCTATCAAACA 57.525 29.630 0.00 0.00 32.31 2.83
2390 2560 9.691362 TCCTTTGTTTTTCTAATGCTATCAAAC 57.309 29.630 0.00 0.00 0.00 2.93
2409 2579 9.807921 TCAAACCTCTTTATAGAATTCCTTTGT 57.192 29.630 0.65 0.00 0.00 2.83
2412 2582 9.454859 CACTCAAACCTCTTTATAGAATTCCTT 57.545 33.333 0.65 0.00 0.00 3.36
2413 2583 8.049721 CCACTCAAACCTCTTTATAGAATTCCT 58.950 37.037 0.65 0.00 0.00 3.36
2414 2584 8.047310 TCCACTCAAACCTCTTTATAGAATTCC 58.953 37.037 0.65 0.00 0.00 3.01
2415 2585 9.620259 ATCCACTCAAACCTCTTTATAGAATTC 57.380 33.333 0.00 0.00 0.00 2.17
2416 2586 9.401058 CATCCACTCAAACCTCTTTATAGAATT 57.599 33.333 0.00 0.00 0.00 2.17
2417 2587 7.995488 CCATCCACTCAAACCTCTTTATAGAAT 59.005 37.037 0.00 0.00 0.00 2.40
2418 2588 7.182026 TCCATCCACTCAAACCTCTTTATAGAA 59.818 37.037 0.00 0.00 0.00 2.10
2419 2589 6.672218 TCCATCCACTCAAACCTCTTTATAGA 59.328 38.462 0.00 0.00 0.00 1.98
2420 2590 6.889198 TCCATCCACTCAAACCTCTTTATAG 58.111 40.000 0.00 0.00 0.00 1.31
2421 2591 6.884472 TCCATCCACTCAAACCTCTTTATA 57.116 37.500 0.00 0.00 0.00 0.98
2422 2592 5.779241 TCCATCCACTCAAACCTCTTTAT 57.221 39.130 0.00 0.00 0.00 1.40
2423 2593 5.576563 TTCCATCCACTCAAACCTCTTTA 57.423 39.130 0.00 0.00 0.00 1.85
2424 2594 4.453480 TTCCATCCACTCAAACCTCTTT 57.547 40.909 0.00 0.00 0.00 2.52
2425 2595 4.453480 TTTCCATCCACTCAAACCTCTT 57.547 40.909 0.00 0.00 0.00 2.85
2426 2596 4.664688 ATTTCCATCCACTCAAACCTCT 57.335 40.909 0.00 0.00 0.00 3.69
2427 2597 5.728637 AAATTTCCATCCACTCAAACCTC 57.271 39.130 0.00 0.00 0.00 3.85
2428 2598 6.101650 GAAAATTTCCATCCACTCAAACCT 57.898 37.500 0.00 0.00 0.00 3.50
2447 2617 9.757227 CCATTTGTACTACATTTTGAAGGAAAA 57.243 29.630 0.00 0.00 37.93 2.29
2448 2618 9.137459 TCCATTTGTACTACATTTTGAAGGAAA 57.863 29.630 0.00 0.00 0.00 3.13
2449 2619 8.698973 TCCATTTGTACTACATTTTGAAGGAA 57.301 30.769 0.00 0.00 0.00 3.36
2450 2620 8.877864 ATCCATTTGTACTACATTTTGAAGGA 57.122 30.769 0.00 0.00 0.00 3.36
2451 2621 8.739039 TGATCCATTTGTACTACATTTTGAAGG 58.261 33.333 0.00 0.00 0.00 3.46
2460 2630 9.913310 TTTTCCATATGATCCATTTGTACTACA 57.087 29.630 3.65 0.00 0.00 2.74
2471 2641 9.934784 TCCTTAGAAATTTTTCCATATGATCCA 57.065 29.630 3.65 0.00 37.92 3.41
2475 2645 8.641541 GGCATCCTTAGAAATTTTTCCATATGA 58.358 33.333 3.65 0.00 37.92 2.15
2476 2646 8.423349 TGGCATCCTTAGAAATTTTTCCATATG 58.577 33.333 0.00 0.00 37.92 1.78
2477 2647 8.551682 TGGCATCCTTAGAAATTTTTCCATAT 57.448 30.769 0.00 0.00 37.92 1.78
2478 2648 7.969690 TGGCATCCTTAGAAATTTTTCCATA 57.030 32.000 0.00 0.00 37.92 2.74
2479 2649 6.872585 TGGCATCCTTAGAAATTTTTCCAT 57.127 33.333 0.00 0.00 37.92 3.41
2480 2650 6.678568 TTGGCATCCTTAGAAATTTTTCCA 57.321 33.333 0.00 0.00 37.92 3.53
2481 2651 6.763135 GGATTGGCATCCTTAGAAATTTTTCC 59.237 38.462 8.23 0.00 45.41 3.13
2482 2652 7.776933 GGATTGGCATCCTTAGAAATTTTTC 57.223 36.000 8.23 0.00 45.41 2.29
2496 2666 5.239306 TCGTTTGATTCATAGGATTGGCATC 59.761 40.000 0.00 0.00 0.00 3.91
2497 2667 5.132502 TCGTTTGATTCATAGGATTGGCAT 58.867 37.500 0.00 0.00 0.00 4.40
2498 2668 4.522114 TCGTTTGATTCATAGGATTGGCA 58.478 39.130 0.00 0.00 0.00 4.92
2499 2669 4.576463 ACTCGTTTGATTCATAGGATTGGC 59.424 41.667 0.97 0.00 0.00 4.52
2500 2670 7.657354 TGATACTCGTTTGATTCATAGGATTGG 59.343 37.037 0.97 0.00 0.00 3.16
2501 2671 8.491152 GTGATACTCGTTTGATTCATAGGATTG 58.509 37.037 0.97 0.00 0.00 2.67
2502 2672 8.204160 TGTGATACTCGTTTGATTCATAGGATT 58.796 33.333 0.97 0.00 0.00 3.01
2503 2673 7.726216 TGTGATACTCGTTTGATTCATAGGAT 58.274 34.615 0.97 0.00 0.00 3.24
2504 2674 7.107639 TGTGATACTCGTTTGATTCATAGGA 57.892 36.000 0.00 0.00 0.00 2.94
2505 2675 6.422100 CCTGTGATACTCGTTTGATTCATAGG 59.578 42.308 0.00 0.00 36.56 2.57
2506 2676 7.203218 TCCTGTGATACTCGTTTGATTCATAG 58.797 38.462 0.00 0.00 0.00 2.23
2507 2677 7.107639 TCCTGTGATACTCGTTTGATTCATA 57.892 36.000 0.00 0.00 0.00 2.15
2508 2678 5.977635 TCCTGTGATACTCGTTTGATTCAT 58.022 37.500 0.00 0.00 0.00 2.57
2509 2679 5.400066 TCCTGTGATACTCGTTTGATTCA 57.600 39.130 0.00 0.00 0.00 2.57
2510 2680 6.721571 TTTCCTGTGATACTCGTTTGATTC 57.278 37.500 0.00 0.00 0.00 2.52
2511 2681 7.504924 TTTTTCCTGTGATACTCGTTTGATT 57.495 32.000 0.00 0.00 0.00 2.57
2512 2682 7.687941 ATTTTTCCTGTGATACTCGTTTGAT 57.312 32.000 0.00 0.00 0.00 2.57
2513 2683 7.308348 GGAATTTTTCCTGTGATACTCGTTTGA 60.308 37.037 0.00 0.00 46.57 2.69
2514 2684 6.801862 GGAATTTTTCCTGTGATACTCGTTTG 59.198 38.462 0.00 0.00 46.57 2.93
2515 2685 6.909909 GGAATTTTTCCTGTGATACTCGTTT 58.090 36.000 0.00 0.00 46.57 3.60
2516 2686 6.496338 GGAATTTTTCCTGTGATACTCGTT 57.504 37.500 0.00 0.00 46.57 3.85
2544 2714 9.875691 GCATAGGATTTTTGAAGGATTTAAACT 57.124 29.630 0.00 0.00 33.04 2.66
2545 2715 9.651913 TGCATAGGATTTTTGAAGGATTTAAAC 57.348 29.630 0.00 0.00 33.04 2.01
2549 2719 9.387257 GAATTGCATAGGATTTTTGAAGGATTT 57.613 29.630 0.00 0.00 0.00 2.17
2550 2720 8.765517 AGAATTGCATAGGATTTTTGAAGGATT 58.234 29.630 0.00 0.00 0.00 3.01
2551 2721 8.315220 AGAATTGCATAGGATTTTTGAAGGAT 57.685 30.769 0.00 0.00 0.00 3.24
2552 2722 7.722949 AGAATTGCATAGGATTTTTGAAGGA 57.277 32.000 0.00 0.00 0.00 3.36
2553 2723 8.782339 AAAGAATTGCATAGGATTTTTGAAGG 57.218 30.769 0.00 0.00 0.00 3.46
2555 2725 9.775854 TCAAAAGAATTGCATAGGATTTTTGAA 57.224 25.926 15.65 6.14 39.14 2.69
2556 2726 9.775854 TTCAAAAGAATTGCATAGGATTTTTGA 57.224 25.926 14.73 14.73 39.86 2.69
2559 2729 9.947433 TGATTCAAAAGAATTGCATAGGATTTT 57.053 25.926 0.00 0.00 0.00 1.82
2560 2730 9.947433 TTGATTCAAAAGAATTGCATAGGATTT 57.053 25.926 0.00 0.00 0.00 2.17
2561 2731 9.947433 TTTGATTCAAAAGAATTGCATAGGATT 57.053 25.926 9.36 0.00 29.89 3.01
2562 2732 9.595823 CTTTGATTCAAAAGAATTGCATAGGAT 57.404 29.630 12.62 0.00 39.12 3.24
2563 2733 8.036575 CCTTTGATTCAAAAGAATTGCATAGGA 58.963 33.333 12.62 0.00 39.12 2.94
2564 2734 8.036575 TCCTTTGATTCAAAAGAATTGCATAGG 58.963 33.333 12.62 6.23 39.12 2.57
2565 2735 8.991243 TCCTTTGATTCAAAAGAATTGCATAG 57.009 30.769 12.62 0.00 39.12 2.23
2566 2736 9.206870 GTTCCTTTGATTCAAAAGAATTGCATA 57.793 29.630 20.47 0.86 36.57 3.14
2567 2737 7.173735 GGTTCCTTTGATTCAAAAGAATTGCAT 59.826 33.333 20.47 0.00 36.57 3.96
2568 2738 6.482973 GGTTCCTTTGATTCAAAAGAATTGCA 59.517 34.615 20.47 2.02 36.57 4.08
2569 2739 6.073058 GGGTTCCTTTGATTCAAAAGAATTGC 60.073 38.462 20.47 11.42 36.57 3.56
2570 2740 7.219322 AGGGTTCCTTTGATTCAAAAGAATTG 58.781 34.615 20.47 6.63 36.57 2.32
2571 2741 7.379059 AGGGTTCCTTTGATTCAAAAGAATT 57.621 32.000 20.47 10.71 36.57 2.17
2572 2742 7.379059 AAGGGTTCCTTTGATTCAAAAGAAT 57.621 32.000 20.47 7.51 41.69 2.40
2573 2743 6.806668 AAGGGTTCCTTTGATTCAAAAGAA 57.193 33.333 15.84 15.84 41.69 2.52
2574 2744 7.066781 ACTAAGGGTTCCTTTGATTCAAAAGA 58.933 34.615 12.62 9.43 41.69 2.52
2575 2745 7.231519 AGACTAAGGGTTCCTTTGATTCAAAAG 59.768 37.037 12.62 7.27 41.69 2.27
2576 2746 7.066781 AGACTAAGGGTTCCTTTGATTCAAAA 58.933 34.615 12.62 0.00 41.69 2.44
2577 2747 6.610830 AGACTAAGGGTTCCTTTGATTCAAA 58.389 36.000 11.19 11.19 41.69 2.69
2578 2748 6.200878 AGACTAAGGGTTCCTTTGATTCAA 57.799 37.500 13.40 0.00 41.69 2.69
2579 2749 5.843019 AGACTAAGGGTTCCTTTGATTCA 57.157 39.130 13.40 0.00 41.69 2.57
2580 2750 5.106118 GCAAGACTAAGGGTTCCTTTGATTC 60.106 44.000 13.40 3.79 41.69 2.52
2581 2751 4.767409 GCAAGACTAAGGGTTCCTTTGATT 59.233 41.667 13.40 6.42 41.69 2.57
2582 2752 4.043435 AGCAAGACTAAGGGTTCCTTTGAT 59.957 41.667 13.40 0.00 41.69 2.57
2583 2753 3.394606 AGCAAGACTAAGGGTTCCTTTGA 59.605 43.478 13.40 0.00 41.69 2.69
2584 2754 3.753797 GAGCAAGACTAAGGGTTCCTTTG 59.246 47.826 4.40 5.64 41.69 2.77
2585 2755 3.244946 GGAGCAAGACTAAGGGTTCCTTT 60.245 47.826 4.40 0.00 41.69 3.11
2586 2756 2.306219 GGAGCAAGACTAAGGGTTCCTT 59.694 50.000 4.51 4.51 46.63 3.36
2587 2757 1.909986 GGAGCAAGACTAAGGGTTCCT 59.090 52.381 0.00 0.00 33.87 3.36
2588 2758 1.405661 CGGAGCAAGACTAAGGGTTCC 60.406 57.143 0.00 0.00 0.00 3.62
2589 2759 2.011540 CGGAGCAAGACTAAGGGTTC 57.988 55.000 0.00 0.00 0.00 3.62
2836 3006 0.529378 CCAAGGCTTGGTCATGAAGC 59.471 55.000 33.43 9.04 45.93 3.86
2888 3060 2.190843 CAACCCACACCACCGACA 59.809 61.111 0.00 0.00 0.00 4.35
3066 3251 0.249155 TCGCGAAACTTTCTGACCGT 60.249 50.000 6.20 0.00 0.00 4.83
3130 3315 8.428186 TTCTAAATAAAGTTCAACGACACACT 57.572 30.769 0.00 0.00 0.00 3.55
3131 3316 7.320560 GCTTCTAAATAAAGTTCAACGACACAC 59.679 37.037 0.00 0.00 0.00 3.82
3207 3392 0.098728 GTGTGCAGCACAACGTTCTT 59.901 50.000 29.84 0.00 46.28 2.52
3313 3504 5.569630 GCCCTGAACTCGGATACATATGAAT 60.570 44.000 10.38 0.00 0.00 2.57
3427 3620 8.023050 AGATTTTGTTCGTCTCTTTACATCAG 57.977 34.615 0.00 0.00 0.00 2.90
3531 3724 2.277008 AAGGACATGTGAGGGGATCT 57.723 50.000 1.15 0.00 0.00 2.75
3564 3765 2.096496 GGGAAAGCGAGTCAATGACATG 59.904 50.000 16.38 8.24 34.60 3.21
3594 3795 3.240134 GACAGTGCGAGGCAAGGGA 62.240 63.158 0.00 0.00 41.47 4.20
3599 3800 4.056125 CCGAGACAGTGCGAGGCA 62.056 66.667 0.00 0.00 35.60 4.75
3609 3810 3.510531 ATATCTAGAGTGGCCGAGACA 57.489 47.619 0.00 0.00 0.00 3.41
3701 3910 4.628766 CCTCTGTGTCACTCATGTACATTG 59.371 45.833 5.37 2.44 0.00 2.82
3703 3912 4.089361 TCCTCTGTGTCACTCATGTACAT 58.911 43.478 1.41 1.41 0.00 2.29
3717 3926 0.252467 ACTCTCCCCCTTCCTCTGTG 60.252 60.000 0.00 0.00 0.00 3.66
3760 3969 9.352191 GTATCCACTAAACTCTTATACTCCTCA 57.648 37.037 0.00 0.00 0.00 3.86
3817 4026 6.032251 GCGTCGTAGCTTATGTAGTTATTAGC 59.968 42.308 0.00 0.00 33.99 3.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.