Multiple sequence alignment - TraesCS3A01G214000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G214000 chr3A 100.000 3992 0 0 1 3992 388099107 388095116 0.000000e+00 7372.0
1 TraesCS3A01G214000 chr3A 92.408 382 26 2 1 379 388254730 388254349 3.510000e-150 542.0
2 TraesCS3A01G214000 chr3A 93.011 372 23 3 1 371 604391300 604390931 1.260000e-149 540.0
3 TraesCS3A01G214000 chr3A 87.730 163 7 2 3531 3688 388095487 388095333 1.140000e-40 178.0
4 TraesCS3A01G214000 chr3A 87.730 163 7 2 3621 3775 388095577 388095420 1.140000e-40 178.0
5 TraesCS3A01G214000 chr3D 97.533 3121 45 3 902 3990 293813156 293810036 0.000000e+00 5308.0
6 TraesCS3A01G214000 chr3D 89.960 249 22 1 380 625 293814837 293814589 6.440000e-83 318.0
7 TraesCS3A01G214000 chr3D 90.798 163 7 3 3621 3775 293810524 293810362 1.120000e-50 211.0
8 TraesCS3A01G214000 chr3D 87.117 163 8 2 3531 3688 293810429 293810275 5.300000e-39 172.0
9 TraesCS3A01G214000 chr3D 93.258 89 2 3 774 860 293813238 293813152 1.160000e-25 128.0
10 TraesCS3A01G214000 chr3B 96.898 3063 59 7 727 3760 387436963 387433908 0.000000e+00 5097.0
11 TraesCS3A01G214000 chr3B 90.987 233 16 3 380 609 387437402 387437172 3.870000e-80 309.0
12 TraesCS3A01G214000 chr3B 88.344 163 11 1 3621 3775 387434142 387433980 5.270000e-44 189.0
13 TraesCS3A01G214000 chr3B 84.459 148 10 2 3531 3673 387434047 387433908 2.500000e-27 134.0
14 TraesCS3A01G214000 chr3B 88.073 109 8 5 638 742 387437184 387437077 1.510000e-24 124.0
15 TraesCS3A01G214000 chr3B 82.353 102 10 5 3431 3532 636436089 636436182 9.190000e-12 82.4
16 TraesCS3A01G214000 chr7A 92.328 378 24 5 4 380 505583001 505582628 2.110000e-147 532.0
17 TraesCS3A01G214000 chr4A 91.601 381 29 3 1 379 44527341 44526962 1.270000e-144 523.0
18 TraesCS3A01G214000 chr4A 91.339 381 30 3 1 380 101180836 101180458 5.910000e-143 518.0
19 TraesCS3A01G214000 chr4A 91.316 380 30 3 1 379 61786840 61787217 2.130000e-142 516.0
20 TraesCS3A01G214000 chr4A 90.476 105 9 1 3428 3532 727051492 727051389 1.930000e-28 137.0
21 TraesCS3A01G214000 chr4A 100.000 31 0 0 3430 3460 688614729 688614759 1.550000e-04 58.4
22 TraesCS3A01G214000 chr5A 91.316 380 31 2 1 379 133925494 133925116 5.910000e-143 518.0
23 TraesCS3A01G214000 chr2A 91.339 381 30 3 1 379 676148606 676148985 5.910000e-143 518.0
24 TraesCS3A01G214000 chr2A 89.286 84 8 1 3449 3532 691607484 691607402 1.960000e-18 104.0
25 TraesCS3A01G214000 chr1A 91.339 381 27 4 1 379 133506502 133506878 2.130000e-142 516.0
26 TraesCS3A01G214000 chr2D 91.262 103 8 1 3430 3532 568192397 568192296 5.380000e-29 139.0
27 TraesCS3A01G214000 chr1D 84.615 104 8 5 3429 3532 256204827 256204922 3.280000e-16 97.1
28 TraesCS3A01G214000 chrUn 96.774 31 1 0 3430 3460 7178537 7178507 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G214000 chr3A 388095116 388099107 3991 True 2576.0 7372 91.8200 1 3992 3 chr3A.!!$R3 3991
1 TraesCS3A01G214000 chr3D 293810036 293814837 4801 True 1227.4 5308 91.7332 380 3990 5 chr3D.!!$R1 3610
2 TraesCS3A01G214000 chr3B 387433908 387437402 3494 True 1170.6 5097 89.7522 380 3775 5 chr3B.!!$R1 3395

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
127 128 0.031043 TTCTTCCGCTCACGAAACGA 59.969 50.000 0.00 0.0 43.93 3.85 F
372 373 0.106918 TGGAATGTTACATCCGGGGC 60.107 55.000 0.00 0.0 38.63 5.80 F
373 374 0.106918 GGAATGTTACATCCGGGGCA 60.107 55.000 0.00 0.0 0.00 5.36 F
794 2165 0.724549 GTTATCCACGCGTTCATGCA 59.275 50.000 10.22 0.0 34.15 3.96 F
1614 3006 1.142870 CCATCCCCAACCACATATCGT 59.857 52.381 0.00 0.0 0.00 3.73 F
2142 3534 3.198635 TGTTTGGCAAAATGGGTGAGAAA 59.801 39.130 15.29 0.0 0.00 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1872 3264 0.396695 AGCAATCCATGGCCTCCTTG 60.397 55.000 6.96 6.66 0.00 3.61 R
2142 3534 1.228337 TGCATCTGGTGTGCAGCTT 60.228 52.632 0.00 0.00 46.76 3.74 R
2270 3662 5.064452 CAGGACTCAATGAGCAAGACATAAC 59.936 44.000 10.62 0.00 32.04 1.89 R
2602 3994 0.326595 TCTTTCTGCAATGCCCCGTA 59.673 50.000 1.53 0.00 0.00 4.02 R
2712 4104 1.065854 TCTTTAGCAAGAGCCTCTGCC 60.066 52.381 11.05 0.00 43.56 4.85 R
3909 5333 4.304110 GTTTGACTGTGACCGAATACTGA 58.696 43.478 0.00 0.00 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.747735 TAACCGTTGGGGCATCAAA 57.252 47.368 0.00 0.00 40.62 2.69
19 20 1.249407 TAACCGTTGGGGCATCAAAC 58.751 50.000 0.00 0.00 40.62 2.93
20 21 1.801309 AACCGTTGGGGCATCAAACG 61.801 55.000 10.75 10.75 40.62 3.60
21 22 1.969064 CCGTTGGGGCATCAAACGA 60.969 57.895 17.09 0.00 0.00 3.85
22 23 1.209127 CGTTGGGGCATCAAACGAC 59.791 57.895 11.93 0.00 0.00 4.34
23 24 1.584495 GTTGGGGCATCAAACGACC 59.416 57.895 0.00 0.00 0.00 4.79
24 25 0.893727 GTTGGGGCATCAAACGACCT 60.894 55.000 0.00 0.00 0.00 3.85
25 26 0.608035 TTGGGGCATCAAACGACCTC 60.608 55.000 0.00 0.00 0.00 3.85
26 27 1.749258 GGGGCATCAAACGACCTCC 60.749 63.158 0.00 0.00 0.00 4.30
27 28 1.002624 GGGCATCAAACGACCTCCA 60.003 57.895 0.00 0.00 0.00 3.86
28 29 0.608035 GGGCATCAAACGACCTCCAA 60.608 55.000 0.00 0.00 0.00 3.53
29 30 1.243902 GGCATCAAACGACCTCCAAA 58.756 50.000 0.00 0.00 0.00 3.28
30 31 1.818674 GGCATCAAACGACCTCCAAAT 59.181 47.619 0.00 0.00 0.00 2.32
31 32 2.415893 GGCATCAAACGACCTCCAAATG 60.416 50.000 0.00 0.00 0.00 2.32
32 33 2.415893 GCATCAAACGACCTCCAAATGG 60.416 50.000 0.00 0.00 0.00 3.16
33 34 2.940994 TCAAACGACCTCCAAATGGA 57.059 45.000 1.53 1.53 43.08 3.41
34 35 3.216187 TCAAACGACCTCCAAATGGAA 57.784 42.857 3.35 0.00 44.91 3.53
35 36 2.882137 TCAAACGACCTCCAAATGGAAC 59.118 45.455 3.35 0.00 44.91 3.62
36 37 1.519408 AACGACCTCCAAATGGAACG 58.481 50.000 16.18 16.18 44.91 3.95
37 38 0.682852 ACGACCTCCAAATGGAACGA 59.317 50.000 21.26 0.00 44.91 3.85
38 39 1.071071 ACGACCTCCAAATGGAACGAA 59.929 47.619 21.26 0.00 44.91 3.85
39 40 1.732259 CGACCTCCAAATGGAACGAAG 59.268 52.381 14.00 0.00 44.91 3.79
51 52 4.043168 ACGAAGTTTGACAGGCGG 57.957 55.556 0.00 0.00 37.78 6.13
52 53 2.251642 ACGAAGTTTGACAGGCGGC 61.252 57.895 0.00 0.00 37.78 6.53
53 54 2.954611 GAAGTTTGACAGGCGGCC 59.045 61.111 12.11 12.11 0.00 6.13
54 55 1.600916 GAAGTTTGACAGGCGGCCT 60.601 57.895 17.69 17.69 0.00 5.19
55 56 0.321298 GAAGTTTGACAGGCGGCCTA 60.321 55.000 23.37 2.94 29.64 3.93
56 57 0.328258 AAGTTTGACAGGCGGCCTAT 59.672 50.000 23.37 11.55 29.64 2.57
57 58 0.107654 AGTTTGACAGGCGGCCTATC 60.108 55.000 23.37 21.72 29.64 2.08
58 59 1.153449 TTTGACAGGCGGCCTATCG 60.153 57.895 23.37 12.47 27.91 2.92
59 60 1.609635 TTTGACAGGCGGCCTATCGA 61.610 55.000 23.37 18.03 27.91 3.59
60 61 1.399744 TTGACAGGCGGCCTATCGAT 61.400 55.000 23.37 2.16 27.91 3.59
61 62 1.373497 GACAGGCGGCCTATCGATG 60.373 63.158 23.37 11.80 29.64 3.84
62 63 1.806461 GACAGGCGGCCTATCGATGA 61.806 60.000 23.37 0.00 29.64 2.92
63 64 1.188219 ACAGGCGGCCTATCGATGAT 61.188 55.000 23.37 0.00 29.64 2.45
64 65 0.738762 CAGGCGGCCTATCGATGATG 60.739 60.000 23.37 2.62 29.64 3.07
65 66 1.188219 AGGCGGCCTATCGATGATGT 61.188 55.000 22.47 0.00 28.47 3.06
66 67 0.530744 GGCGGCCTATCGATGATGTA 59.469 55.000 12.87 0.00 0.00 2.29
67 68 1.469940 GGCGGCCTATCGATGATGTAG 60.470 57.143 12.87 0.00 0.00 2.74
68 69 1.914634 CGGCCTATCGATGATGTAGC 58.085 55.000 8.54 1.61 0.00 3.58
69 70 1.202348 CGGCCTATCGATGATGTAGCA 59.798 52.381 8.54 0.00 0.00 3.49
70 71 2.352715 CGGCCTATCGATGATGTAGCAA 60.353 50.000 8.54 0.00 0.00 3.91
71 72 3.257393 GGCCTATCGATGATGTAGCAAG 58.743 50.000 8.54 0.00 0.00 4.01
72 73 3.257393 GCCTATCGATGATGTAGCAAGG 58.743 50.000 8.54 4.39 0.00 3.61
73 74 3.257393 CCTATCGATGATGTAGCAAGGC 58.743 50.000 8.54 0.00 0.00 4.35
74 75 2.175878 ATCGATGATGTAGCAAGGCC 57.824 50.000 0.00 0.00 0.00 5.19
75 76 0.829990 TCGATGATGTAGCAAGGCCA 59.170 50.000 5.01 0.00 0.00 5.36
76 77 0.940126 CGATGATGTAGCAAGGCCAC 59.060 55.000 5.01 0.00 0.00 5.01
77 78 1.473965 CGATGATGTAGCAAGGCCACT 60.474 52.381 5.01 1.03 0.00 4.00
78 79 2.216898 GATGATGTAGCAAGGCCACTC 58.783 52.381 5.01 0.00 0.00 3.51
79 80 0.983467 TGATGTAGCAAGGCCACTCA 59.017 50.000 5.01 0.59 0.00 3.41
80 81 1.350684 TGATGTAGCAAGGCCACTCAA 59.649 47.619 5.01 0.00 0.00 3.02
81 82 1.740025 GATGTAGCAAGGCCACTCAAC 59.260 52.381 5.01 0.00 0.00 3.18
82 83 0.472044 TGTAGCAAGGCCACTCAACA 59.528 50.000 5.01 0.04 0.00 3.33
83 84 1.133945 TGTAGCAAGGCCACTCAACAA 60.134 47.619 5.01 0.00 0.00 2.83
84 85 1.953686 GTAGCAAGGCCACTCAACAAA 59.046 47.619 5.01 0.00 0.00 2.83
85 86 1.708341 AGCAAGGCCACTCAACAAAT 58.292 45.000 5.01 0.00 0.00 2.32
86 87 1.615392 AGCAAGGCCACTCAACAAATC 59.385 47.619 5.01 0.00 0.00 2.17
87 88 1.615392 GCAAGGCCACTCAACAAATCT 59.385 47.619 5.01 0.00 0.00 2.40
88 89 2.036346 GCAAGGCCACTCAACAAATCTT 59.964 45.455 5.01 0.00 0.00 2.40
89 90 3.645884 CAAGGCCACTCAACAAATCTTG 58.354 45.455 5.01 0.00 0.00 3.02
90 91 2.242043 AGGCCACTCAACAAATCTTGG 58.758 47.619 5.01 0.00 34.12 3.61
91 92 2.070262 GCCACTCAACAAATCTTGGC 57.930 50.000 0.00 0.00 42.57 4.52
92 93 1.337167 GCCACTCAACAAATCTTGGCC 60.337 52.381 0.00 0.00 43.14 5.36
93 94 1.273327 CCACTCAACAAATCTTGGCCC 59.727 52.381 0.00 0.00 34.12 5.80
94 95 2.242043 CACTCAACAAATCTTGGCCCT 58.758 47.619 0.00 0.00 34.12 5.19
95 96 2.629617 CACTCAACAAATCTTGGCCCTT 59.370 45.455 0.00 0.00 34.12 3.95
96 97 2.893489 ACTCAACAAATCTTGGCCCTTC 59.107 45.455 0.00 0.00 34.12 3.46
97 98 2.232208 CTCAACAAATCTTGGCCCTTCC 59.768 50.000 0.00 0.00 34.12 3.46
98 99 1.067635 CAACAAATCTTGGCCCTTCCG 60.068 52.381 0.00 0.00 37.80 4.30
99 100 0.404040 ACAAATCTTGGCCCTTCCGA 59.596 50.000 0.00 0.00 37.80 4.55
100 101 1.005924 ACAAATCTTGGCCCTTCCGAT 59.994 47.619 0.00 0.00 37.80 4.18
101 102 2.241176 ACAAATCTTGGCCCTTCCGATA 59.759 45.455 0.00 0.00 37.80 2.92
102 103 3.287222 CAAATCTTGGCCCTTCCGATAA 58.713 45.455 0.00 0.00 37.80 1.75
103 104 2.640316 ATCTTGGCCCTTCCGATAAC 57.360 50.000 0.00 0.00 37.80 1.89
104 105 0.177141 TCTTGGCCCTTCCGATAACG 59.823 55.000 0.00 0.00 37.80 3.18
105 106 0.107848 CTTGGCCCTTCCGATAACGT 60.108 55.000 0.00 0.00 37.80 3.99
106 107 0.325602 TTGGCCCTTCCGATAACGTT 59.674 50.000 5.88 5.88 37.80 3.99
107 108 0.325602 TGGCCCTTCCGATAACGTTT 59.674 50.000 5.91 0.00 37.80 3.60
108 109 1.271488 TGGCCCTTCCGATAACGTTTT 60.271 47.619 5.91 0.00 37.80 2.43
109 110 1.814394 GGCCCTTCCGATAACGTTTTT 59.186 47.619 5.91 0.00 37.88 1.94
110 111 2.159476 GGCCCTTCCGATAACGTTTTTC 60.159 50.000 5.91 3.35 37.88 2.29
111 112 2.745821 GCCCTTCCGATAACGTTTTTCT 59.254 45.455 5.91 0.00 37.88 2.52
112 113 3.189910 GCCCTTCCGATAACGTTTTTCTT 59.810 43.478 5.91 0.00 37.88 2.52
113 114 4.670992 GCCCTTCCGATAACGTTTTTCTTC 60.671 45.833 5.91 0.00 37.88 2.87
114 115 4.142752 CCCTTCCGATAACGTTTTTCTTCC 60.143 45.833 5.91 0.00 37.88 3.46
115 116 4.435121 CCTTCCGATAACGTTTTTCTTCCG 60.435 45.833 5.91 0.00 37.88 4.30
116 117 2.412770 TCCGATAACGTTTTTCTTCCGC 59.587 45.455 5.91 0.00 37.88 5.54
117 118 2.414138 CCGATAACGTTTTTCTTCCGCT 59.586 45.455 5.91 0.00 37.88 5.52
118 119 3.483085 CCGATAACGTTTTTCTTCCGCTC 60.483 47.826 5.91 0.00 37.88 5.03
119 120 3.122278 CGATAACGTTTTTCTTCCGCTCA 59.878 43.478 5.91 0.00 34.56 4.26
120 121 2.750301 AACGTTTTTCTTCCGCTCAC 57.250 45.000 0.00 0.00 0.00 3.51
121 122 0.580104 ACGTTTTTCTTCCGCTCACG 59.420 50.000 0.00 0.00 39.67 4.35
122 123 0.856641 CGTTTTTCTTCCGCTCACGA 59.143 50.000 0.00 0.00 43.93 4.35
123 124 1.259507 CGTTTTTCTTCCGCTCACGAA 59.740 47.619 0.00 0.00 43.93 3.85
124 125 2.285950 CGTTTTTCTTCCGCTCACGAAA 60.286 45.455 0.00 0.00 43.93 3.46
125 126 3.033873 GTTTTTCTTCCGCTCACGAAAC 58.966 45.455 0.00 0.00 43.93 2.78
126 127 0.856641 TTTCTTCCGCTCACGAAACG 59.143 50.000 0.00 0.00 43.93 3.60
127 128 0.031043 TTCTTCCGCTCACGAAACGA 59.969 50.000 0.00 0.00 43.93 3.85
128 129 0.386858 TCTTCCGCTCACGAAACGAG 60.387 55.000 0.00 0.00 43.93 4.18
129 130 0.386858 CTTCCGCTCACGAAACGAGA 60.387 55.000 0.00 0.00 43.93 4.04
130 131 0.242825 TTCCGCTCACGAAACGAGAT 59.757 50.000 0.00 0.00 43.93 2.75
131 132 0.242825 TCCGCTCACGAAACGAGATT 59.757 50.000 0.00 0.00 43.93 2.40
132 133 1.068474 CCGCTCACGAAACGAGATTT 58.932 50.000 0.00 0.00 43.93 2.17
133 134 1.201812 CCGCTCACGAAACGAGATTTG 60.202 52.381 0.00 0.00 43.93 2.32
134 135 1.719246 CGCTCACGAAACGAGATTTGA 59.281 47.619 0.00 0.00 43.93 2.69
135 136 2.222376 CGCTCACGAAACGAGATTTGAG 60.222 50.000 0.00 0.00 43.93 3.02
136 137 2.987149 GCTCACGAAACGAGATTTGAGA 59.013 45.455 11.00 1.75 31.84 3.27
137 138 3.060098 GCTCACGAAACGAGATTTGAGAG 59.940 47.826 11.00 9.86 31.84 3.20
138 139 3.575630 TCACGAAACGAGATTTGAGAGG 58.424 45.455 0.00 0.00 0.00 3.69
139 140 3.005472 TCACGAAACGAGATTTGAGAGGT 59.995 43.478 0.00 0.00 0.00 3.85
140 141 3.121944 CACGAAACGAGATTTGAGAGGTG 59.878 47.826 0.00 0.00 0.00 4.00
141 142 2.092838 CGAAACGAGATTTGAGAGGTGC 59.907 50.000 0.00 0.00 0.00 5.01
142 143 2.839486 AACGAGATTTGAGAGGTGCA 57.161 45.000 0.00 0.00 0.00 4.57
143 144 2.839486 ACGAGATTTGAGAGGTGCAA 57.161 45.000 0.00 0.00 0.00 4.08
144 145 2.417719 ACGAGATTTGAGAGGTGCAAC 58.582 47.619 0.00 0.00 0.00 4.17
145 146 1.391485 CGAGATTTGAGAGGTGCAACG 59.609 52.381 0.00 0.00 38.12 4.10
146 147 1.734465 GAGATTTGAGAGGTGCAACGG 59.266 52.381 0.00 0.00 38.12 4.44
147 148 0.804989 GATTTGAGAGGTGCAACGGG 59.195 55.000 0.00 0.00 38.12 5.28
148 149 0.110486 ATTTGAGAGGTGCAACGGGT 59.890 50.000 0.00 0.00 38.12 5.28
149 150 0.817634 TTTGAGAGGTGCAACGGGTG 60.818 55.000 0.00 0.00 38.12 4.61
159 160 3.477504 CAACGGGTGCATTTGTGAG 57.522 52.632 0.00 0.00 0.00 3.51
160 161 0.667993 CAACGGGTGCATTTGTGAGT 59.332 50.000 0.00 0.00 0.00 3.41
161 162 0.667993 AACGGGTGCATTTGTGAGTG 59.332 50.000 0.00 0.00 0.00 3.51
162 163 0.465460 ACGGGTGCATTTGTGAGTGT 60.465 50.000 0.00 0.00 0.00 3.55
163 164 0.238289 CGGGTGCATTTGTGAGTGTC 59.762 55.000 0.00 0.00 0.00 3.67
164 165 0.238289 GGGTGCATTTGTGAGTGTCG 59.762 55.000 0.00 0.00 0.00 4.35
165 166 0.238289 GGTGCATTTGTGAGTGTCGG 59.762 55.000 0.00 0.00 0.00 4.79
166 167 1.225855 GTGCATTTGTGAGTGTCGGA 58.774 50.000 0.00 0.00 0.00 4.55
167 168 1.806542 GTGCATTTGTGAGTGTCGGAT 59.193 47.619 0.00 0.00 0.00 4.18
168 169 2.226437 GTGCATTTGTGAGTGTCGGATT 59.774 45.455 0.00 0.00 0.00 3.01
169 170 2.483877 TGCATTTGTGAGTGTCGGATTC 59.516 45.455 0.00 0.00 0.00 2.52
170 171 2.159517 GCATTTGTGAGTGTCGGATTCC 60.160 50.000 0.00 0.00 0.00 3.01
187 188 4.762825 CGAAACGGACAACAGGGA 57.237 55.556 0.00 0.00 0.00 4.20
188 189 2.994990 CGAAACGGACAACAGGGAA 58.005 52.632 0.00 0.00 0.00 3.97
189 190 1.301423 CGAAACGGACAACAGGGAAA 58.699 50.000 0.00 0.00 0.00 3.13
190 191 1.671845 CGAAACGGACAACAGGGAAAA 59.328 47.619 0.00 0.00 0.00 2.29
191 192 2.292292 CGAAACGGACAACAGGGAAAAT 59.708 45.455 0.00 0.00 0.00 1.82
192 193 3.638484 GAAACGGACAACAGGGAAAATG 58.362 45.455 0.00 0.00 0.00 2.32
193 194 2.649531 ACGGACAACAGGGAAAATGA 57.350 45.000 0.00 0.00 0.00 2.57
194 195 2.227194 ACGGACAACAGGGAAAATGAC 58.773 47.619 0.00 0.00 0.00 3.06
195 196 1.539827 CGGACAACAGGGAAAATGACC 59.460 52.381 0.00 0.00 0.00 4.02
196 197 1.539827 GGACAACAGGGAAAATGACCG 59.460 52.381 0.00 0.00 0.00 4.79
197 198 1.539827 GACAACAGGGAAAATGACCGG 59.460 52.381 0.00 0.00 0.00 5.28
198 199 1.144093 ACAACAGGGAAAATGACCGGA 59.856 47.619 9.46 0.00 0.00 5.14
199 200 2.225017 ACAACAGGGAAAATGACCGGAT 60.225 45.455 9.46 0.00 0.00 4.18
200 201 3.009695 ACAACAGGGAAAATGACCGGATA 59.990 43.478 9.46 0.00 0.00 2.59
201 202 3.277142 ACAGGGAAAATGACCGGATAC 57.723 47.619 9.46 0.00 0.00 2.24
202 203 2.574369 ACAGGGAAAATGACCGGATACA 59.426 45.455 9.46 5.76 0.00 2.29
203 204 3.202151 ACAGGGAAAATGACCGGATACAT 59.798 43.478 9.46 8.14 0.00 2.29
204 205 3.565482 CAGGGAAAATGACCGGATACATG 59.435 47.826 9.46 0.00 0.00 3.21
205 206 3.458118 AGGGAAAATGACCGGATACATGA 59.542 43.478 9.46 0.00 0.00 3.07
206 207 3.815401 GGGAAAATGACCGGATACATGAG 59.185 47.826 9.46 0.00 0.00 2.90
207 208 4.444306 GGGAAAATGACCGGATACATGAGA 60.444 45.833 9.46 0.00 0.00 3.27
208 209 4.511826 GGAAAATGACCGGATACATGAGAC 59.488 45.833 9.46 4.37 0.00 3.36
209 210 3.371102 AATGACCGGATACATGAGACG 57.629 47.619 9.46 0.00 0.00 4.18
210 211 2.047002 TGACCGGATACATGAGACGA 57.953 50.000 9.46 0.00 0.00 4.20
211 212 2.371306 TGACCGGATACATGAGACGAA 58.629 47.619 9.46 0.00 0.00 3.85
212 213 2.098607 TGACCGGATACATGAGACGAAC 59.901 50.000 9.46 0.00 0.00 3.95
213 214 2.097036 ACCGGATACATGAGACGAACA 58.903 47.619 9.46 0.00 0.00 3.18
214 215 2.159282 ACCGGATACATGAGACGAACAC 60.159 50.000 9.46 0.00 0.00 3.32
215 216 2.109463 CGGATACATGAGACGAACACG 58.891 52.381 0.00 0.00 0.00 4.49
216 217 2.223180 CGGATACATGAGACGAACACGA 60.223 50.000 0.00 0.00 0.00 4.35
217 218 3.729762 CGGATACATGAGACGAACACGAA 60.730 47.826 0.00 0.00 0.00 3.85
218 219 4.360563 GGATACATGAGACGAACACGAAT 58.639 43.478 0.00 0.00 0.00 3.34
219 220 4.207224 GGATACATGAGACGAACACGAATG 59.793 45.833 0.00 0.00 0.00 2.67
220 221 1.726791 ACATGAGACGAACACGAATGC 59.273 47.619 0.00 0.00 0.00 3.56
221 222 1.726248 CATGAGACGAACACGAATGCA 59.274 47.619 0.00 0.00 0.00 3.96
222 223 1.859383 TGAGACGAACACGAATGCAA 58.141 45.000 0.00 0.00 0.00 4.08
223 224 2.205911 TGAGACGAACACGAATGCAAA 58.794 42.857 0.00 0.00 0.00 3.68
224 225 2.805671 TGAGACGAACACGAATGCAAAT 59.194 40.909 0.00 0.00 0.00 2.32
225 226 3.155998 GAGACGAACACGAATGCAAATG 58.844 45.455 0.00 0.00 0.00 2.32
226 227 2.805671 AGACGAACACGAATGCAAATGA 59.194 40.909 0.00 0.00 0.00 2.57
227 228 3.120546 AGACGAACACGAATGCAAATGAG 60.121 43.478 0.00 0.00 0.00 2.90
228 229 2.805671 ACGAACACGAATGCAAATGAGA 59.194 40.909 0.00 0.00 0.00 3.27
229 230 3.436704 ACGAACACGAATGCAAATGAGAT 59.563 39.130 0.00 0.00 0.00 2.75
230 231 3.782369 CGAACACGAATGCAAATGAGATG 59.218 43.478 0.00 0.00 0.00 2.90
231 232 3.141002 ACACGAATGCAAATGAGATGC 57.859 42.857 0.00 0.00 44.08 3.91
240 241 4.301637 GCAAATGAGATGCACATGATGA 57.698 40.909 0.00 0.00 43.29 2.92
241 242 4.042398 GCAAATGAGATGCACATGATGAC 58.958 43.478 0.00 0.00 43.29 3.06
242 243 4.439563 GCAAATGAGATGCACATGATGACA 60.440 41.667 0.00 0.00 43.29 3.58
243 244 5.736207 GCAAATGAGATGCACATGATGACAT 60.736 40.000 0.00 2.24 43.29 3.06
244 245 7.707169 GCAAATGAGATGCACATGATGACATG 61.707 42.308 0.00 8.38 44.71 3.21
245 246 9.747457 GCAAATGAGATGCACATGATGACATGA 62.747 40.741 15.53 0.00 46.99 3.07
257 258 6.901081 ATGATGACATGAGATGAAATGCAT 57.099 33.333 0.00 0.00 36.17 3.96
258 259 6.072112 TGATGACATGAGATGAAATGCATG 57.928 37.500 0.00 0.00 39.95 4.06
259 260 5.825679 TGATGACATGAGATGAAATGCATGA 59.174 36.000 0.00 0.00 37.71 3.07
260 261 5.494632 TGACATGAGATGAAATGCATGAC 57.505 39.130 0.00 0.00 37.71 3.06
261 262 4.944930 TGACATGAGATGAAATGCATGACA 59.055 37.500 0.00 4.07 37.71 3.58
262 263 5.592688 TGACATGAGATGAAATGCATGACAT 59.407 36.000 15.57 15.57 42.30 3.06
263 264 5.831997 ACATGAGATGAAATGCATGACATG 58.168 37.500 19.05 11.27 44.09 3.21
264 265 5.592688 ACATGAGATGAAATGCATGACATGA 59.407 36.000 19.76 4.94 42.82 3.07
265 266 6.096282 ACATGAGATGAAATGCATGACATGAA 59.904 34.615 19.76 9.39 42.82 2.57
266 267 5.886992 TGAGATGAAATGCATGACATGAAC 58.113 37.500 19.76 2.91 39.60 3.18
267 268 5.416326 TGAGATGAAATGCATGACATGAACA 59.584 36.000 19.76 8.78 39.60 3.18
268 269 6.071840 TGAGATGAAATGCATGACATGAACAA 60.072 34.615 19.76 1.60 39.60 2.83
269 270 6.693466 AGATGAAATGCATGACATGAACAAA 58.307 32.000 19.76 0.03 39.60 2.83
270 271 7.156000 AGATGAAATGCATGACATGAACAAAA 58.844 30.769 19.76 0.54 39.60 2.44
271 272 7.822334 AGATGAAATGCATGACATGAACAAAAT 59.178 29.630 19.76 5.35 39.60 1.82
272 273 7.731882 TGAAATGCATGACATGAACAAAATT 57.268 28.000 19.76 5.89 39.60 1.82
273 274 7.798801 TGAAATGCATGACATGAACAAAATTC 58.201 30.769 19.76 13.25 39.60 2.17
274 275 7.441458 TGAAATGCATGACATGAACAAAATTCA 59.559 29.630 19.76 15.12 39.60 2.57
275 276 7.731882 AATGCATGACATGAACAAAATTCAA 57.268 28.000 19.76 0.00 39.60 2.69
276 277 7.731882 ATGCATGACATGAACAAAATTCAAA 57.268 28.000 19.76 0.00 37.70 2.69
277 278 7.549615 TGCATGACATGAACAAAATTCAAAA 57.450 28.000 19.76 0.00 31.55 2.44
278 279 7.408123 TGCATGACATGAACAAAATTCAAAAC 58.592 30.769 19.76 0.00 31.55 2.43
279 280 6.570789 GCATGACATGAACAAAATTCAAAACG 59.429 34.615 19.76 0.00 31.55 3.60
280 281 7.516470 GCATGACATGAACAAAATTCAAAACGA 60.516 33.333 19.76 0.00 31.55 3.85
281 282 7.448588 TGACATGAACAAAATTCAAAACGAG 57.551 32.000 0.00 0.00 31.55 4.18
282 283 6.475076 TGACATGAACAAAATTCAAAACGAGG 59.525 34.615 0.00 0.00 31.55 4.63
283 284 6.568869 ACATGAACAAAATTCAAAACGAGGA 58.431 32.000 0.00 0.00 31.55 3.71
284 285 7.038659 ACATGAACAAAATTCAAAACGAGGAA 58.961 30.769 0.00 0.00 31.55 3.36
285 286 6.879188 TGAACAAAATTCAAAACGAGGAAC 57.121 33.333 0.00 0.00 0.00 3.62
286 287 6.390721 TGAACAAAATTCAAAACGAGGAACA 58.609 32.000 0.00 0.00 0.00 3.18
287 288 6.868864 TGAACAAAATTCAAAACGAGGAACAA 59.131 30.769 0.00 0.00 0.00 2.83
288 289 7.385205 TGAACAAAATTCAAAACGAGGAACAAA 59.615 29.630 0.00 0.00 0.00 2.83
289 290 7.659652 ACAAAATTCAAAACGAGGAACAAAA 57.340 28.000 0.00 0.00 0.00 2.44
290 291 7.514805 ACAAAATTCAAAACGAGGAACAAAAC 58.485 30.769 0.00 0.00 0.00 2.43
291 292 6.656314 AAATTCAAAACGAGGAACAAAACC 57.344 33.333 0.00 0.00 0.00 3.27
292 293 3.786516 TCAAAACGAGGAACAAAACCC 57.213 42.857 0.00 0.00 0.00 4.11
293 294 3.090037 TCAAAACGAGGAACAAAACCCA 58.910 40.909 0.00 0.00 0.00 4.51
294 295 3.510360 TCAAAACGAGGAACAAAACCCAA 59.490 39.130 0.00 0.00 0.00 4.12
295 296 3.513680 AAACGAGGAACAAAACCCAAC 57.486 42.857 0.00 0.00 0.00 3.77
296 297 1.395635 ACGAGGAACAAAACCCAACC 58.604 50.000 0.00 0.00 0.00 3.77
297 298 1.341187 ACGAGGAACAAAACCCAACCA 60.341 47.619 0.00 0.00 0.00 3.67
298 299 1.960689 CGAGGAACAAAACCCAACCAT 59.039 47.619 0.00 0.00 0.00 3.55
299 300 2.288152 CGAGGAACAAAACCCAACCATG 60.288 50.000 0.00 0.00 0.00 3.66
300 301 2.962421 GAGGAACAAAACCCAACCATGA 59.038 45.455 0.00 0.00 0.00 3.07
301 302 3.379452 AGGAACAAAACCCAACCATGAA 58.621 40.909 0.00 0.00 0.00 2.57
302 303 3.973305 AGGAACAAAACCCAACCATGAAT 59.027 39.130 0.00 0.00 0.00 2.57
303 304 4.064388 GGAACAAAACCCAACCATGAATG 58.936 43.478 0.00 0.00 0.00 2.67
304 305 4.202305 GGAACAAAACCCAACCATGAATGA 60.202 41.667 0.00 0.00 0.00 2.57
305 306 5.512921 GGAACAAAACCCAACCATGAATGAT 60.513 40.000 0.00 0.00 0.00 2.45
306 307 6.295575 GGAACAAAACCCAACCATGAATGATA 60.296 38.462 0.00 0.00 0.00 2.15
307 308 6.872585 ACAAAACCCAACCATGAATGATAT 57.127 33.333 0.00 0.00 0.00 1.63
308 309 7.969690 ACAAAACCCAACCATGAATGATATA 57.030 32.000 0.00 0.00 0.00 0.86
309 310 8.372877 ACAAAACCCAACCATGAATGATATAA 57.627 30.769 0.00 0.00 0.00 0.98
310 311 8.257306 ACAAAACCCAACCATGAATGATATAAC 58.743 33.333 0.00 0.00 0.00 1.89
311 312 7.969690 AAACCCAACCATGAATGATATAACA 57.030 32.000 0.00 0.00 0.00 2.41
312 313 8.551682 AAACCCAACCATGAATGATATAACAT 57.448 30.769 0.00 0.00 0.00 2.71
313 314 9.653516 AAACCCAACCATGAATGATATAACATA 57.346 29.630 0.00 0.00 0.00 2.29
314 315 9.827198 AACCCAACCATGAATGATATAACATAT 57.173 29.630 0.00 0.00 0.00 1.78
315 316 9.466497 ACCCAACCATGAATGATATAACATATC 57.534 33.333 0.00 0.15 0.00 1.63
316 317 9.465199 CCCAACCATGAATGATATAACATATCA 57.535 33.333 10.44 10.44 38.20 2.15
331 332 6.889301 AACATATCACATAGCCTGAAATGG 57.111 37.500 0.00 0.00 0.00 3.16
342 343 3.749665 CCTGAAATGGCAAAAGTTGGA 57.250 42.857 0.00 0.00 0.00 3.53
343 344 3.656559 CCTGAAATGGCAAAAGTTGGAG 58.343 45.455 0.00 0.00 0.00 3.86
344 345 3.070015 CCTGAAATGGCAAAAGTTGGAGT 59.930 43.478 0.00 0.00 0.00 3.85
345 346 4.443315 CCTGAAATGGCAAAAGTTGGAGTT 60.443 41.667 0.00 0.00 0.00 3.01
346 347 5.221422 CCTGAAATGGCAAAAGTTGGAGTTA 60.221 40.000 0.00 0.00 0.00 2.24
347 348 5.596845 TGAAATGGCAAAAGTTGGAGTTAC 58.403 37.500 0.00 0.00 0.00 2.50
348 349 5.127845 TGAAATGGCAAAAGTTGGAGTTACA 59.872 36.000 0.00 0.00 0.00 2.41
349 350 5.606348 AATGGCAAAAGTTGGAGTTACAA 57.394 34.783 0.00 0.00 0.00 2.41
350 351 5.806654 ATGGCAAAAGTTGGAGTTACAAT 57.193 34.783 0.00 0.00 32.24 2.71
351 352 5.606348 TGGCAAAAGTTGGAGTTACAATT 57.394 34.783 0.00 0.00 32.24 2.32
352 353 6.716934 TGGCAAAAGTTGGAGTTACAATTA 57.283 33.333 0.00 0.00 32.24 1.40
353 354 7.296628 TGGCAAAAGTTGGAGTTACAATTAT 57.703 32.000 0.00 0.00 32.24 1.28
354 355 7.151308 TGGCAAAAGTTGGAGTTACAATTATG 58.849 34.615 0.00 0.00 32.24 1.90
355 356 6.589907 GGCAAAAGTTGGAGTTACAATTATGG 59.410 38.462 0.00 0.00 32.24 2.74
356 357 7.375053 GCAAAAGTTGGAGTTACAATTATGGA 58.625 34.615 0.00 0.00 32.24 3.41
357 358 7.870445 GCAAAAGTTGGAGTTACAATTATGGAA 59.130 33.333 0.00 0.00 32.24 3.53
358 359 9.927668 CAAAAGTTGGAGTTACAATTATGGAAT 57.072 29.630 0.00 0.00 30.36 3.01
359 360 9.927668 AAAAGTTGGAGTTACAATTATGGAATG 57.072 29.630 0.00 0.00 30.36 2.67
360 361 8.650143 AAGTTGGAGTTACAATTATGGAATGT 57.350 30.769 0.00 0.00 30.36 2.71
361 362 8.650143 AGTTGGAGTTACAATTATGGAATGTT 57.350 30.769 0.00 0.00 30.36 2.71
362 363 9.747898 AGTTGGAGTTACAATTATGGAATGTTA 57.252 29.630 0.00 0.00 30.36 2.41
363 364 9.783256 GTTGGAGTTACAATTATGGAATGTTAC 57.217 33.333 0.00 0.00 30.36 2.50
364 365 9.521841 TTGGAGTTACAATTATGGAATGTTACA 57.478 29.630 0.00 0.00 30.36 2.41
365 366 9.693739 TGGAGTTACAATTATGGAATGTTACAT 57.306 29.630 0.00 0.00 35.48 2.29
368 369 8.836413 AGTTACAATTATGGAATGTTACATCCG 58.164 33.333 0.00 0.00 38.63 4.18
369 370 6.633500 ACAATTATGGAATGTTACATCCGG 57.367 37.500 0.00 0.00 38.63 5.14
370 371 5.534654 ACAATTATGGAATGTTACATCCGGG 59.465 40.000 0.00 0.00 38.63 5.73
371 372 2.656947 ATGGAATGTTACATCCGGGG 57.343 50.000 0.00 0.00 38.63 5.73
372 373 0.106918 TGGAATGTTACATCCGGGGC 60.107 55.000 0.00 0.00 38.63 5.80
373 374 0.106918 GGAATGTTACATCCGGGGCA 60.107 55.000 0.00 0.00 0.00 5.36
374 375 1.478654 GGAATGTTACATCCGGGGCAT 60.479 52.381 0.00 0.00 0.00 4.40
375 376 2.306847 GAATGTTACATCCGGGGCATT 58.693 47.619 0.00 3.82 0.00 3.56
376 377 3.482436 GAATGTTACATCCGGGGCATTA 58.518 45.455 0.00 0.00 0.00 1.90
377 378 2.335316 TGTTACATCCGGGGCATTAC 57.665 50.000 0.00 0.00 0.00 1.89
378 379 1.560146 TGTTACATCCGGGGCATTACA 59.440 47.619 0.00 0.00 0.00 2.41
382 383 1.841277 ACATCCGGGGCATTACAGTAA 59.159 47.619 0.00 0.00 0.00 2.24
420 421 1.226746 GGTAGCAAAAGCGACAGTGT 58.773 50.000 0.00 0.00 0.00 3.55
449 450 2.043115 TGAGAAGGTAAGAGAGAGGGCA 59.957 50.000 0.00 0.00 0.00 5.36
473 474 5.078949 TGCTTGGATGAGGAAAATCTGAAA 58.921 37.500 0.00 0.00 0.00 2.69
480 481 5.432885 TGAGGAAAATCTGAAAACGGAAC 57.567 39.130 0.00 0.00 0.00 3.62
503 504 4.755629 CGATAAGTGAGGAGATACGGAAGA 59.244 45.833 0.00 0.00 0.00 2.87
513 514 1.884579 GATACGGAAGAGGCGGACATA 59.115 52.381 0.00 0.00 0.00 2.29
794 2165 0.724549 GTTATCCACGCGTTCATGCA 59.275 50.000 10.22 0.00 34.15 3.96
809 2180 2.028484 GCACGGAAGACACGGACA 59.972 61.111 0.00 0.00 35.23 4.02
810 2181 2.308039 GCACGGAAGACACGGACAC 61.308 63.158 0.00 0.00 35.23 3.67
886 2257 3.528597 AACGGGCTTGTATTCTCTCTC 57.471 47.619 0.00 0.00 0.00 3.20
887 2258 2.741145 ACGGGCTTGTATTCTCTCTCT 58.259 47.619 0.00 0.00 0.00 3.10
888 2259 2.428890 ACGGGCTTGTATTCTCTCTCTG 59.571 50.000 0.00 0.00 0.00 3.35
889 2260 2.690497 CGGGCTTGTATTCTCTCTCTGA 59.310 50.000 0.00 0.00 0.00 3.27
892 2263 4.404073 GGGCTTGTATTCTCTCTCTGAAGA 59.596 45.833 0.00 0.00 0.00 2.87
1251 2643 1.294780 CAACGCTCTCAAGCTCCCT 59.705 57.895 0.00 0.00 46.91 4.20
1410 2802 1.971357 ACCTGCAACACAGTACTAGCT 59.029 47.619 0.00 0.00 45.68 3.32
1422 2814 4.277593 CTAGCTGCGCTCCTCCGG 62.278 72.222 9.73 0.00 40.44 5.14
1602 2994 2.042762 CCTGTCCTCCCATCCCCA 59.957 66.667 0.00 0.00 0.00 4.96
1614 3006 1.142870 CCATCCCCAACCACATATCGT 59.857 52.381 0.00 0.00 0.00 3.73
1872 3264 5.397221 GGGGTACTTTCTAAAGGGTATGGAC 60.397 48.000 7.34 0.00 40.31 4.02
2142 3534 3.198635 TGTTTGGCAAAATGGGTGAGAAA 59.801 39.130 15.29 0.00 0.00 2.52
2270 3662 6.362551 CGTGGTATTAATCCTGACGAATACAG 59.637 42.308 0.00 0.00 36.78 2.74
2322 3714 3.206150 GGTTGATAATGTGGATGACGCT 58.794 45.455 0.00 0.00 0.00 5.07
2491 3883 6.516194 GCCAAACATTGCTAGCTATGAATCAT 60.516 38.462 35.41 16.95 34.27 2.45
2574 3966 9.832445 GGTATTCTTTTGGATGAGAGTATTGTA 57.168 33.333 0.00 0.00 0.00 2.41
2712 4104 1.473080 GCAGCTGAAGAGAAGGCTAGG 60.473 57.143 20.43 0.00 33.43 3.02
3251 4643 8.362639 CCCCTGAAATCACTCAATTTATTATGG 58.637 37.037 0.00 0.00 0.00 2.74
3265 4657 9.797556 CAATTTATTATGGCATATGATCACAGG 57.202 33.333 8.24 0.00 0.00 4.00
3533 4928 9.528018 GAATCAACTCAACCAAAAACTTCATTA 57.472 29.630 0.00 0.00 0.00 1.90
3542 4937 9.313118 CAACCAAAAACTTCATTAAGCTTTACT 57.687 29.630 3.20 0.00 36.05 2.24
3609 5009 4.396166 CCTTCAACTGGACAATATGTGACC 59.604 45.833 0.00 0.00 41.88 4.02
3909 5333 4.593634 ACAAGTACTCCCTAGCTTCTTTGT 59.406 41.667 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.249407 GTTTGATGCCCCAACGGTTA 58.751 50.000 0.00 0.00 0.00 2.85
1 2 1.801309 CGTTTGATGCCCCAACGGTT 61.801 55.000 5.14 0.00 0.00 4.44
2 3 2.265182 CGTTTGATGCCCCAACGGT 61.265 57.895 5.14 0.00 0.00 4.83
3 4 1.969064 TCGTTTGATGCCCCAACGG 60.969 57.895 10.91 0.00 0.00 4.44
4 5 1.209127 GTCGTTTGATGCCCCAACG 59.791 57.895 6.32 6.32 0.00 4.10
5 6 0.893727 AGGTCGTTTGATGCCCCAAC 60.894 55.000 0.00 0.00 0.00 3.77
6 7 0.608035 GAGGTCGTTTGATGCCCCAA 60.608 55.000 0.00 0.00 0.00 4.12
7 8 1.002624 GAGGTCGTTTGATGCCCCA 60.003 57.895 0.00 0.00 0.00 4.96
8 9 1.749258 GGAGGTCGTTTGATGCCCC 60.749 63.158 0.00 0.00 0.00 5.80
9 10 0.608035 TTGGAGGTCGTTTGATGCCC 60.608 55.000 0.00 0.00 0.00 5.36
10 11 1.243902 TTTGGAGGTCGTTTGATGCC 58.756 50.000 0.00 0.00 0.00 4.40
11 12 2.415893 CCATTTGGAGGTCGTTTGATGC 60.416 50.000 0.00 0.00 37.39 3.91
12 13 3.081061 TCCATTTGGAGGTCGTTTGATG 58.919 45.455 0.00 0.00 39.78 3.07
13 14 3.433306 TCCATTTGGAGGTCGTTTGAT 57.567 42.857 0.00 0.00 39.78 2.57
14 15 2.882137 GTTCCATTTGGAGGTCGTTTGA 59.118 45.455 0.00 0.00 46.36 2.69
15 16 2.350388 CGTTCCATTTGGAGGTCGTTTG 60.350 50.000 0.00 0.00 46.36 2.93
16 17 1.877443 CGTTCCATTTGGAGGTCGTTT 59.123 47.619 0.00 0.00 46.36 3.60
17 18 1.071071 TCGTTCCATTTGGAGGTCGTT 59.929 47.619 15.14 0.00 46.36 3.85
18 19 0.682852 TCGTTCCATTTGGAGGTCGT 59.317 50.000 15.14 0.00 46.36 4.34
19 20 1.732259 CTTCGTTCCATTTGGAGGTCG 59.268 52.381 0.00 6.92 46.36 4.79
20 21 2.779506 ACTTCGTTCCATTTGGAGGTC 58.220 47.619 0.00 0.00 46.36 3.85
21 22 2.951229 ACTTCGTTCCATTTGGAGGT 57.049 45.000 0.00 0.00 46.36 3.85
22 23 3.568007 TCAAACTTCGTTCCATTTGGAGG 59.432 43.478 0.00 0.00 46.36 4.30
23 24 4.036262 TGTCAAACTTCGTTCCATTTGGAG 59.964 41.667 0.00 0.00 46.36 3.86
24 25 3.948473 TGTCAAACTTCGTTCCATTTGGA 59.052 39.130 0.00 0.00 43.73 3.53
25 26 4.290155 CTGTCAAACTTCGTTCCATTTGG 58.710 43.478 0.00 0.00 33.72 3.28
26 27 4.290155 CCTGTCAAACTTCGTTCCATTTG 58.710 43.478 0.00 0.00 34.11 2.32
27 28 3.243401 GCCTGTCAAACTTCGTTCCATTT 60.243 43.478 0.00 0.00 0.00 2.32
28 29 2.293399 GCCTGTCAAACTTCGTTCCATT 59.707 45.455 0.00 0.00 0.00 3.16
29 30 1.880027 GCCTGTCAAACTTCGTTCCAT 59.120 47.619 0.00 0.00 0.00 3.41
30 31 1.305201 GCCTGTCAAACTTCGTTCCA 58.695 50.000 0.00 0.00 0.00 3.53
31 32 0.234884 CGCCTGTCAAACTTCGTTCC 59.765 55.000 0.00 0.00 0.00 3.62
32 33 0.234884 CCGCCTGTCAAACTTCGTTC 59.765 55.000 0.00 0.00 0.00 3.95
33 34 1.782028 GCCGCCTGTCAAACTTCGTT 61.782 55.000 0.00 0.00 0.00 3.85
34 35 2.251642 GCCGCCTGTCAAACTTCGT 61.252 57.895 0.00 0.00 0.00 3.85
35 36 2.556287 GCCGCCTGTCAAACTTCG 59.444 61.111 0.00 0.00 0.00 3.79
36 37 0.321298 TAGGCCGCCTGTCAAACTTC 60.321 55.000 22.95 0.00 34.61 3.01
37 38 0.328258 ATAGGCCGCCTGTCAAACTT 59.672 50.000 22.95 0.00 34.61 2.66
38 39 0.107654 GATAGGCCGCCTGTCAAACT 60.108 55.000 26.59 0.12 40.73 2.66
39 40 1.429148 CGATAGGCCGCCTGTCAAAC 61.429 60.000 29.34 9.25 41.02 2.93
40 41 1.153449 CGATAGGCCGCCTGTCAAA 60.153 57.895 29.34 8.98 41.02 2.69
41 42 1.399744 ATCGATAGGCCGCCTGTCAA 61.400 55.000 29.34 16.89 41.02 3.18
42 43 1.832608 ATCGATAGGCCGCCTGTCA 60.833 57.895 29.34 19.19 41.02 3.58
43 44 1.373497 CATCGATAGGCCGCCTGTC 60.373 63.158 22.90 22.90 38.21 3.51
44 45 1.188219 ATCATCGATAGGCCGCCTGT 61.188 55.000 22.95 16.19 34.61 4.00
45 46 0.738762 CATCATCGATAGGCCGCCTG 60.739 60.000 22.95 5.48 34.61 4.85
46 47 1.188219 ACATCATCGATAGGCCGCCT 61.188 55.000 18.05 18.05 37.71 5.52
47 48 0.530744 TACATCATCGATAGGCCGCC 59.469 55.000 0.00 0.00 0.00 6.13
48 49 1.914634 CTACATCATCGATAGGCCGC 58.085 55.000 0.00 0.00 0.00 6.53
49 50 1.202348 TGCTACATCATCGATAGGCCG 59.798 52.381 0.00 0.00 0.00 6.13
50 51 3.257393 CTTGCTACATCATCGATAGGCC 58.743 50.000 0.00 0.00 0.00 5.19
51 52 3.257393 CCTTGCTACATCATCGATAGGC 58.743 50.000 0.00 0.00 0.00 3.93
52 53 3.257393 GCCTTGCTACATCATCGATAGG 58.743 50.000 0.00 0.00 0.00 2.57
53 54 3.257393 GGCCTTGCTACATCATCGATAG 58.743 50.000 0.00 0.00 0.00 2.08
54 55 2.632512 TGGCCTTGCTACATCATCGATA 59.367 45.455 3.32 0.00 0.00 2.92
55 56 1.417517 TGGCCTTGCTACATCATCGAT 59.582 47.619 3.32 0.00 0.00 3.59
56 57 0.829990 TGGCCTTGCTACATCATCGA 59.170 50.000 3.32 0.00 0.00 3.59
57 58 0.940126 GTGGCCTTGCTACATCATCG 59.060 55.000 3.32 0.00 39.80 3.84
58 59 2.216898 GAGTGGCCTTGCTACATCATC 58.783 52.381 3.32 0.00 42.47 2.92
59 60 1.561076 TGAGTGGCCTTGCTACATCAT 59.439 47.619 3.32 0.00 42.47 2.45
60 61 0.983467 TGAGTGGCCTTGCTACATCA 59.017 50.000 3.32 3.66 42.47 3.07
61 62 1.740025 GTTGAGTGGCCTTGCTACATC 59.260 52.381 3.32 1.36 42.47 3.06
62 63 1.073763 TGTTGAGTGGCCTTGCTACAT 59.926 47.619 3.32 0.00 42.47 2.29
63 64 0.472044 TGTTGAGTGGCCTTGCTACA 59.528 50.000 3.32 3.41 42.47 2.74
64 65 1.604604 TTGTTGAGTGGCCTTGCTAC 58.395 50.000 3.32 0.58 40.33 3.58
65 66 2.356665 TTTGTTGAGTGGCCTTGCTA 57.643 45.000 3.32 0.00 0.00 3.49
66 67 1.615392 GATTTGTTGAGTGGCCTTGCT 59.385 47.619 3.32 0.00 0.00 3.91
67 68 1.615392 AGATTTGTTGAGTGGCCTTGC 59.385 47.619 3.32 0.00 0.00 4.01
68 69 3.553508 CCAAGATTTGTTGAGTGGCCTTG 60.554 47.826 3.32 0.00 0.00 3.61
69 70 2.629617 CCAAGATTTGTTGAGTGGCCTT 59.370 45.455 3.32 0.00 0.00 4.35
70 71 2.242043 CCAAGATTTGTTGAGTGGCCT 58.758 47.619 3.32 0.00 0.00 5.19
71 72 1.337167 GCCAAGATTTGTTGAGTGGCC 60.337 52.381 0.00 0.00 44.65 5.36
72 73 2.070262 GCCAAGATTTGTTGAGTGGC 57.930 50.000 0.00 0.00 44.23 5.01
73 74 1.273327 GGGCCAAGATTTGTTGAGTGG 59.727 52.381 4.39 0.00 0.00 4.00
74 75 2.242043 AGGGCCAAGATTTGTTGAGTG 58.758 47.619 6.18 0.00 0.00 3.51
75 76 2.683211 AGGGCCAAGATTTGTTGAGT 57.317 45.000 6.18 0.00 0.00 3.41
76 77 2.232208 GGAAGGGCCAAGATTTGTTGAG 59.768 50.000 6.18 0.00 36.34 3.02
77 78 2.247358 GGAAGGGCCAAGATTTGTTGA 58.753 47.619 6.18 0.00 36.34 3.18
78 79 1.067635 CGGAAGGGCCAAGATTTGTTG 60.068 52.381 6.18 0.00 35.94 3.33
79 80 1.203001 TCGGAAGGGCCAAGATTTGTT 60.203 47.619 6.18 0.00 35.94 2.83
80 81 0.404040 TCGGAAGGGCCAAGATTTGT 59.596 50.000 6.18 0.00 35.94 2.83
81 82 1.767759 ATCGGAAGGGCCAAGATTTG 58.232 50.000 6.18 0.00 35.94 2.32
82 83 3.288092 GTTATCGGAAGGGCCAAGATTT 58.712 45.455 6.18 0.00 35.94 2.17
83 84 2.745152 CGTTATCGGAAGGGCCAAGATT 60.745 50.000 6.18 0.00 35.94 2.40
84 85 1.202651 CGTTATCGGAAGGGCCAAGAT 60.203 52.381 6.18 7.28 35.94 2.40
85 86 0.177141 CGTTATCGGAAGGGCCAAGA 59.823 55.000 6.18 0.00 35.94 3.02
86 87 0.107848 ACGTTATCGGAAGGGCCAAG 60.108 55.000 6.18 0.00 41.85 3.61
87 88 0.325602 AACGTTATCGGAAGGGCCAA 59.674 50.000 6.18 0.00 41.85 4.52
88 89 0.325602 AAACGTTATCGGAAGGGCCA 59.674 50.000 6.18 0.00 41.85 5.36
89 90 1.456296 AAAACGTTATCGGAAGGGCC 58.544 50.000 0.00 0.00 41.85 5.80
90 91 2.745821 AGAAAAACGTTATCGGAAGGGC 59.254 45.455 0.00 0.00 41.85 5.19
91 92 4.142752 GGAAGAAAAACGTTATCGGAAGGG 60.143 45.833 0.00 0.00 41.85 3.95
92 93 4.435121 CGGAAGAAAAACGTTATCGGAAGG 60.435 45.833 0.00 0.00 41.85 3.46
93 94 4.634991 CGGAAGAAAAACGTTATCGGAAG 58.365 43.478 0.00 0.00 41.85 3.46
94 95 3.120580 GCGGAAGAAAAACGTTATCGGAA 60.121 43.478 0.00 0.00 41.85 4.30
95 96 2.412770 GCGGAAGAAAAACGTTATCGGA 59.587 45.455 0.00 0.00 41.85 4.55
96 97 2.414138 AGCGGAAGAAAAACGTTATCGG 59.586 45.455 0.00 1.73 41.85 4.18
97 98 3.122278 TGAGCGGAAGAAAAACGTTATCG 59.878 43.478 0.00 0.00 43.34 2.92
98 99 4.392216 GTGAGCGGAAGAAAAACGTTATC 58.608 43.478 0.00 3.34 0.00 1.75
99 100 3.120786 CGTGAGCGGAAGAAAAACGTTAT 60.121 43.478 0.00 0.00 0.00 1.89
100 101 2.219216 CGTGAGCGGAAGAAAAACGTTA 59.781 45.455 0.00 0.00 0.00 3.18
101 102 1.004292 CGTGAGCGGAAGAAAAACGTT 60.004 47.619 0.00 0.00 0.00 3.99
102 103 0.580104 CGTGAGCGGAAGAAAAACGT 59.420 50.000 0.00 0.00 0.00 3.99
103 104 0.856641 TCGTGAGCGGAAGAAAAACG 59.143 50.000 0.00 0.00 38.89 3.60
104 105 3.033873 GTTTCGTGAGCGGAAGAAAAAC 58.966 45.455 1.83 0.00 36.10 2.43
105 106 2.285950 CGTTTCGTGAGCGGAAGAAAAA 60.286 45.455 1.83 0.00 36.10 1.94
106 107 1.259507 CGTTTCGTGAGCGGAAGAAAA 59.740 47.619 1.83 0.00 36.10 2.29
107 108 0.856641 CGTTTCGTGAGCGGAAGAAA 59.143 50.000 0.00 0.00 36.10 2.52
108 109 0.031043 TCGTTTCGTGAGCGGAAGAA 59.969 50.000 0.00 0.00 36.10 2.52
109 110 0.386858 CTCGTTTCGTGAGCGGAAGA 60.387 55.000 0.00 0.00 36.10 2.87
110 111 0.386858 TCTCGTTTCGTGAGCGGAAG 60.387 55.000 0.00 0.00 36.10 3.46
111 112 0.242825 ATCTCGTTTCGTGAGCGGAA 59.757 50.000 0.00 0.00 38.89 4.30
112 113 0.242825 AATCTCGTTTCGTGAGCGGA 59.757 50.000 0.00 0.00 38.89 5.54
113 114 1.068474 AAATCTCGTTTCGTGAGCGG 58.932 50.000 0.00 0.00 38.89 5.52
114 115 1.719246 TCAAATCTCGTTTCGTGAGCG 59.281 47.619 0.00 0.00 33.10 5.03
115 116 2.987149 TCTCAAATCTCGTTTCGTGAGC 59.013 45.455 0.00 0.00 33.10 4.26
116 117 3.610242 CCTCTCAAATCTCGTTTCGTGAG 59.390 47.826 0.00 0.00 33.10 3.51
117 118 3.005472 ACCTCTCAAATCTCGTTTCGTGA 59.995 43.478 0.00 0.00 34.06 4.35
118 119 3.121944 CACCTCTCAAATCTCGTTTCGTG 59.878 47.826 0.00 0.00 0.00 4.35
119 120 3.318017 CACCTCTCAAATCTCGTTTCGT 58.682 45.455 0.00 0.00 0.00 3.85
120 121 2.092838 GCACCTCTCAAATCTCGTTTCG 59.907 50.000 0.00 0.00 0.00 3.46
121 122 3.067106 TGCACCTCTCAAATCTCGTTTC 58.933 45.455 0.00 0.00 0.00 2.78
122 123 3.126001 TGCACCTCTCAAATCTCGTTT 57.874 42.857 0.00 0.00 0.00 3.60
123 124 2.808543 GTTGCACCTCTCAAATCTCGTT 59.191 45.455 0.00 0.00 0.00 3.85
124 125 2.417719 GTTGCACCTCTCAAATCTCGT 58.582 47.619 0.00 0.00 0.00 4.18
125 126 1.391485 CGTTGCACCTCTCAAATCTCG 59.609 52.381 0.00 0.00 0.00 4.04
126 127 1.734465 CCGTTGCACCTCTCAAATCTC 59.266 52.381 0.00 0.00 0.00 2.75
127 128 1.611673 CCCGTTGCACCTCTCAAATCT 60.612 52.381 0.00 0.00 0.00 2.40
128 129 0.804989 CCCGTTGCACCTCTCAAATC 59.195 55.000 0.00 0.00 0.00 2.17
129 130 0.110486 ACCCGTTGCACCTCTCAAAT 59.890 50.000 0.00 0.00 0.00 2.32
130 131 0.817634 CACCCGTTGCACCTCTCAAA 60.818 55.000 0.00 0.00 0.00 2.69
131 132 1.227823 CACCCGTTGCACCTCTCAA 60.228 57.895 0.00 0.00 0.00 3.02
132 133 2.425592 CACCCGTTGCACCTCTCA 59.574 61.111 0.00 0.00 0.00 3.27
141 142 0.667993 ACTCACAAATGCACCCGTTG 59.332 50.000 0.00 0.00 0.00 4.10
142 143 0.667993 CACTCACAAATGCACCCGTT 59.332 50.000 0.00 0.00 0.00 4.44
143 144 0.465460 ACACTCACAAATGCACCCGT 60.465 50.000 0.00 0.00 0.00 5.28
144 145 0.238289 GACACTCACAAATGCACCCG 59.762 55.000 0.00 0.00 0.00 5.28
145 146 0.238289 CGACACTCACAAATGCACCC 59.762 55.000 0.00 0.00 0.00 4.61
146 147 0.238289 CCGACACTCACAAATGCACC 59.762 55.000 0.00 0.00 0.00 5.01
147 148 1.225855 TCCGACACTCACAAATGCAC 58.774 50.000 0.00 0.00 0.00 4.57
148 149 2.183478 ATCCGACACTCACAAATGCA 57.817 45.000 0.00 0.00 0.00 3.96
149 150 2.159517 GGAATCCGACACTCACAAATGC 60.160 50.000 0.00 0.00 0.00 3.56
150 151 3.747099 GGAATCCGACACTCACAAATG 57.253 47.619 0.00 0.00 0.00 2.32
170 171 1.301423 TTTCCCTGTTGTCCGTTTCG 58.699 50.000 0.00 0.00 0.00 3.46
171 172 3.316868 TCATTTTCCCTGTTGTCCGTTTC 59.683 43.478 0.00 0.00 0.00 2.78
172 173 3.067601 GTCATTTTCCCTGTTGTCCGTTT 59.932 43.478 0.00 0.00 0.00 3.60
173 174 2.621526 GTCATTTTCCCTGTTGTCCGTT 59.378 45.455 0.00 0.00 0.00 4.44
174 175 2.227194 GTCATTTTCCCTGTTGTCCGT 58.773 47.619 0.00 0.00 0.00 4.69
175 176 1.539827 GGTCATTTTCCCTGTTGTCCG 59.460 52.381 0.00 0.00 0.00 4.79
176 177 1.539827 CGGTCATTTTCCCTGTTGTCC 59.460 52.381 0.00 0.00 0.00 4.02
177 178 1.539827 CCGGTCATTTTCCCTGTTGTC 59.460 52.381 0.00 0.00 0.00 3.18
178 179 1.144093 TCCGGTCATTTTCCCTGTTGT 59.856 47.619 0.00 0.00 0.00 3.32
179 180 1.904287 TCCGGTCATTTTCCCTGTTG 58.096 50.000 0.00 0.00 0.00 3.33
180 181 2.899303 ATCCGGTCATTTTCCCTGTT 57.101 45.000 0.00 0.00 0.00 3.16
181 182 2.574369 TGTATCCGGTCATTTTCCCTGT 59.426 45.455 0.00 0.00 0.00 4.00
182 183 3.275617 TGTATCCGGTCATTTTCCCTG 57.724 47.619 0.00 0.00 0.00 4.45
183 184 3.458118 TCATGTATCCGGTCATTTTCCCT 59.542 43.478 0.00 0.00 0.00 4.20
184 185 3.815401 CTCATGTATCCGGTCATTTTCCC 59.185 47.826 0.00 0.00 0.00 3.97
185 186 4.511826 GTCTCATGTATCCGGTCATTTTCC 59.488 45.833 0.00 0.00 0.00 3.13
186 187 4.209288 CGTCTCATGTATCCGGTCATTTTC 59.791 45.833 0.00 0.00 0.00 2.29
187 188 4.119862 CGTCTCATGTATCCGGTCATTTT 58.880 43.478 0.00 0.00 0.00 1.82
188 189 3.383505 TCGTCTCATGTATCCGGTCATTT 59.616 43.478 0.00 0.00 0.00 2.32
189 190 2.956333 TCGTCTCATGTATCCGGTCATT 59.044 45.455 0.00 0.00 0.00 2.57
190 191 2.583143 TCGTCTCATGTATCCGGTCAT 58.417 47.619 0.00 2.41 0.00 3.06
191 192 2.047002 TCGTCTCATGTATCCGGTCA 57.953 50.000 0.00 0.00 0.00 4.02
192 193 2.098607 TGTTCGTCTCATGTATCCGGTC 59.901 50.000 0.00 0.00 0.00 4.79
193 194 2.097036 TGTTCGTCTCATGTATCCGGT 58.903 47.619 0.00 0.00 0.00 5.28
194 195 2.460918 GTGTTCGTCTCATGTATCCGG 58.539 52.381 0.00 0.00 0.00 5.14
195 196 2.109463 CGTGTTCGTCTCATGTATCCG 58.891 52.381 0.00 0.00 0.00 4.18
196 197 3.416119 TCGTGTTCGTCTCATGTATCC 57.584 47.619 0.00 0.00 38.33 2.59
197 198 4.317418 GCATTCGTGTTCGTCTCATGTATC 60.317 45.833 0.00 0.00 38.33 2.24
198 199 3.551890 GCATTCGTGTTCGTCTCATGTAT 59.448 43.478 0.00 0.00 38.33 2.29
199 200 2.921121 GCATTCGTGTTCGTCTCATGTA 59.079 45.455 0.00 0.00 38.33 2.29
200 201 1.726791 GCATTCGTGTTCGTCTCATGT 59.273 47.619 0.00 0.00 38.33 3.21
201 202 1.726248 TGCATTCGTGTTCGTCTCATG 59.274 47.619 0.00 0.00 38.33 3.07
202 203 2.078849 TGCATTCGTGTTCGTCTCAT 57.921 45.000 0.00 0.00 38.33 2.90
203 204 1.859383 TTGCATTCGTGTTCGTCTCA 58.141 45.000 0.00 0.00 38.33 3.27
204 205 2.941891 TTTGCATTCGTGTTCGTCTC 57.058 45.000 0.00 0.00 38.33 3.36
205 206 2.805671 TCATTTGCATTCGTGTTCGTCT 59.194 40.909 0.00 0.00 38.33 4.18
206 207 3.120683 TCTCATTTGCATTCGTGTTCGTC 60.121 43.478 0.00 0.00 38.33 4.20
207 208 2.805671 TCTCATTTGCATTCGTGTTCGT 59.194 40.909 0.00 0.00 38.33 3.85
208 209 3.454042 TCTCATTTGCATTCGTGTTCG 57.546 42.857 0.00 0.00 38.55 3.95
209 210 3.545078 GCATCTCATTTGCATTCGTGTTC 59.455 43.478 0.00 0.00 39.90 3.18
210 211 3.057386 TGCATCTCATTTGCATTCGTGTT 60.057 39.130 0.00 0.00 44.73 3.32
211 212 2.488937 TGCATCTCATTTGCATTCGTGT 59.511 40.909 0.00 0.00 44.73 4.49
212 213 3.139603 TGCATCTCATTTGCATTCGTG 57.860 42.857 0.00 0.00 44.73 4.35
218 219 8.076351 ATGTCATCATGTGCATCTCATTTGCA 62.076 38.462 0.00 0.00 39.06 4.08
219 220 4.042398 GTCATCATGTGCATCTCATTTGC 58.958 43.478 0.00 0.00 40.55 3.68
220 221 5.243426 TGTCATCATGTGCATCTCATTTG 57.757 39.130 0.00 0.00 0.00 2.32
221 222 5.831997 CATGTCATCATGTGCATCTCATTT 58.168 37.500 0.00 0.00 44.37 2.32
222 223 5.438761 CATGTCATCATGTGCATCTCATT 57.561 39.130 0.00 0.00 44.37 2.57
232 233 7.735480 CATGCATTTCATCTCATGTCATCATGT 60.735 37.037 0.00 0.00 41.51 3.21
233 234 6.583806 CATGCATTTCATCTCATGTCATCATG 59.416 38.462 0.00 2.27 41.80 3.07
234 235 6.490040 TCATGCATTTCATCTCATGTCATCAT 59.510 34.615 0.00 0.00 37.95 2.45
235 236 5.825679 TCATGCATTTCATCTCATGTCATCA 59.174 36.000 0.00 0.00 37.95 3.07
236 237 6.143496 GTCATGCATTTCATCTCATGTCATC 58.857 40.000 0.00 0.00 37.95 2.92
237 238 5.592688 TGTCATGCATTTCATCTCATGTCAT 59.407 36.000 0.00 0.00 37.95 3.06
238 239 4.944930 TGTCATGCATTTCATCTCATGTCA 59.055 37.500 0.00 0.00 37.95 3.58
239 240 5.494632 TGTCATGCATTTCATCTCATGTC 57.505 39.130 0.00 0.00 37.95 3.06
240 241 5.592688 TCATGTCATGCATTTCATCTCATGT 59.407 36.000 8.03 0.00 40.37 3.21
241 242 6.072112 TCATGTCATGCATTTCATCTCATG 57.928 37.500 8.03 5.04 40.58 3.07
242 243 6.096282 TGTTCATGTCATGCATTTCATCTCAT 59.904 34.615 8.03 0.00 35.19 2.90
243 244 5.416326 TGTTCATGTCATGCATTTCATCTCA 59.584 36.000 8.03 1.72 35.19 3.27
244 245 5.886992 TGTTCATGTCATGCATTTCATCTC 58.113 37.500 8.03 0.00 35.19 2.75
245 246 5.907866 TGTTCATGTCATGCATTTCATCT 57.092 34.783 8.03 0.00 35.19 2.90
246 247 6.954616 TTTGTTCATGTCATGCATTTCATC 57.045 33.333 8.03 0.00 35.19 2.92
247 248 7.915293 ATTTTGTTCATGTCATGCATTTCAT 57.085 28.000 8.03 1.72 35.19 2.57
248 249 7.441458 TGAATTTTGTTCATGTCATGCATTTCA 59.559 29.630 8.03 0.00 35.19 2.69
249 250 7.798801 TGAATTTTGTTCATGTCATGCATTTC 58.201 30.769 8.03 6.27 35.19 2.17
250 251 7.731882 TGAATTTTGTTCATGTCATGCATTT 57.268 28.000 8.03 0.00 35.19 2.32
251 252 7.731882 TTGAATTTTGTTCATGTCATGCATT 57.268 28.000 8.03 0.17 35.19 3.56
252 253 7.731882 TTTGAATTTTGTTCATGTCATGCAT 57.268 28.000 8.03 0.00 38.60 3.96
253 254 7.408123 GTTTTGAATTTTGTTCATGTCATGCA 58.592 30.769 8.03 0.00 0.00 3.96
254 255 6.570789 CGTTTTGAATTTTGTTCATGTCATGC 59.429 34.615 8.03 0.00 0.00 4.06
255 256 7.839493 TCGTTTTGAATTTTGTTCATGTCATG 58.161 30.769 6.47 6.47 0.00 3.07
256 257 7.169645 CCTCGTTTTGAATTTTGTTCATGTCAT 59.830 33.333 0.00 0.00 0.00 3.06
257 258 6.475076 CCTCGTTTTGAATTTTGTTCATGTCA 59.525 34.615 0.00 0.00 0.00 3.58
258 259 6.695278 TCCTCGTTTTGAATTTTGTTCATGTC 59.305 34.615 0.00 0.00 0.00 3.06
259 260 6.568869 TCCTCGTTTTGAATTTTGTTCATGT 58.431 32.000 0.00 0.00 0.00 3.21
260 261 7.009999 TGTTCCTCGTTTTGAATTTTGTTCATG 59.990 33.333 0.00 0.00 0.00 3.07
261 262 7.038659 TGTTCCTCGTTTTGAATTTTGTTCAT 58.961 30.769 0.00 0.00 0.00 2.57
262 263 6.390721 TGTTCCTCGTTTTGAATTTTGTTCA 58.609 32.000 0.00 0.00 0.00 3.18
263 264 6.879188 TGTTCCTCGTTTTGAATTTTGTTC 57.121 33.333 0.00 0.00 0.00 3.18
264 265 7.659652 TTTGTTCCTCGTTTTGAATTTTGTT 57.340 28.000 0.00 0.00 0.00 2.83
265 266 7.360522 GGTTTTGTTCCTCGTTTTGAATTTTGT 60.361 33.333 0.00 0.00 0.00 2.83
266 267 6.958752 GGTTTTGTTCCTCGTTTTGAATTTTG 59.041 34.615 0.00 0.00 0.00 2.44
267 268 6.092944 GGGTTTTGTTCCTCGTTTTGAATTTT 59.907 34.615 0.00 0.00 0.00 1.82
268 269 5.583061 GGGTTTTGTTCCTCGTTTTGAATTT 59.417 36.000 0.00 0.00 0.00 1.82
269 270 5.113383 GGGTTTTGTTCCTCGTTTTGAATT 58.887 37.500 0.00 0.00 0.00 2.17
270 271 4.160626 TGGGTTTTGTTCCTCGTTTTGAAT 59.839 37.500 0.00 0.00 0.00 2.57
271 272 3.510360 TGGGTTTTGTTCCTCGTTTTGAA 59.490 39.130 0.00 0.00 0.00 2.69
272 273 3.090037 TGGGTTTTGTTCCTCGTTTTGA 58.910 40.909 0.00 0.00 0.00 2.69
273 274 3.512033 TGGGTTTTGTTCCTCGTTTTG 57.488 42.857 0.00 0.00 0.00 2.44
274 275 3.368635 GGTTGGGTTTTGTTCCTCGTTTT 60.369 43.478 0.00 0.00 0.00 2.43
275 276 2.166870 GGTTGGGTTTTGTTCCTCGTTT 59.833 45.455 0.00 0.00 0.00 3.60
276 277 1.752498 GGTTGGGTTTTGTTCCTCGTT 59.248 47.619 0.00 0.00 0.00 3.85
277 278 1.341187 TGGTTGGGTTTTGTTCCTCGT 60.341 47.619 0.00 0.00 0.00 4.18
278 279 1.394618 TGGTTGGGTTTTGTTCCTCG 58.605 50.000 0.00 0.00 0.00 4.63
279 280 2.962421 TCATGGTTGGGTTTTGTTCCTC 59.038 45.455 0.00 0.00 0.00 3.71
280 281 3.039252 TCATGGTTGGGTTTTGTTCCT 57.961 42.857 0.00 0.00 0.00 3.36
281 282 3.828875 TTCATGGTTGGGTTTTGTTCC 57.171 42.857 0.00 0.00 0.00 3.62
282 283 4.954875 TCATTCATGGTTGGGTTTTGTTC 58.045 39.130 0.00 0.00 0.00 3.18
283 284 5.565455 ATCATTCATGGTTGGGTTTTGTT 57.435 34.783 0.00 0.00 0.00 2.83
284 285 6.872585 ATATCATTCATGGTTGGGTTTTGT 57.127 33.333 0.00 0.00 0.00 2.83
285 286 8.256605 TGTTATATCATTCATGGTTGGGTTTTG 58.743 33.333 0.00 0.00 0.00 2.44
286 287 8.372877 TGTTATATCATTCATGGTTGGGTTTT 57.627 30.769 0.00 0.00 0.00 2.43
287 288 7.969690 TGTTATATCATTCATGGTTGGGTTT 57.030 32.000 0.00 0.00 0.00 3.27
288 289 9.827198 ATATGTTATATCATTCATGGTTGGGTT 57.173 29.630 1.71 0.00 0.00 4.11
289 290 9.466497 GATATGTTATATCATTCATGGTTGGGT 57.534 33.333 1.71 0.00 0.00 4.51
290 291 9.465199 TGATATGTTATATCATTCATGGTTGGG 57.535 33.333 7.28 0.00 0.00 4.12
305 306 9.671279 CCATTTCAGGCTATGTGATATGTTATA 57.329 33.333 0.00 0.00 33.77 0.98
306 307 8.571461 CCATTTCAGGCTATGTGATATGTTAT 57.429 34.615 0.00 0.00 33.77 1.89
307 308 7.984422 CCATTTCAGGCTATGTGATATGTTA 57.016 36.000 0.00 0.00 33.77 2.41
308 309 6.889301 CCATTTCAGGCTATGTGATATGTT 57.111 37.500 0.00 0.00 33.77 2.71
322 323 3.070015 ACTCCAACTTTTGCCATTTCAGG 59.930 43.478 0.00 0.00 0.00 3.86
323 324 4.326504 ACTCCAACTTTTGCCATTTCAG 57.673 40.909 0.00 0.00 0.00 3.02
324 325 4.751767 AACTCCAACTTTTGCCATTTCA 57.248 36.364 0.00 0.00 0.00 2.69
325 326 5.596845 TGTAACTCCAACTTTTGCCATTTC 58.403 37.500 0.00 0.00 0.00 2.17
326 327 5.606348 TGTAACTCCAACTTTTGCCATTT 57.394 34.783 0.00 0.00 0.00 2.32
327 328 5.606348 TTGTAACTCCAACTTTTGCCATT 57.394 34.783 0.00 0.00 0.00 3.16
328 329 5.806654 ATTGTAACTCCAACTTTTGCCAT 57.193 34.783 0.00 0.00 0.00 4.40
329 330 5.606348 AATTGTAACTCCAACTTTTGCCA 57.394 34.783 0.00 0.00 0.00 4.92
330 331 6.589907 CCATAATTGTAACTCCAACTTTTGCC 59.410 38.462 0.00 0.00 0.00 4.52
331 332 7.375053 TCCATAATTGTAACTCCAACTTTTGC 58.625 34.615 0.00 0.00 0.00 3.68
332 333 9.927668 ATTCCATAATTGTAACTCCAACTTTTG 57.072 29.630 0.00 0.00 0.00 2.44
333 334 9.927668 CATTCCATAATTGTAACTCCAACTTTT 57.072 29.630 0.00 0.00 0.00 2.27
334 335 9.088987 ACATTCCATAATTGTAACTCCAACTTT 57.911 29.630 0.00 0.00 0.00 2.66
335 336 8.650143 ACATTCCATAATTGTAACTCCAACTT 57.350 30.769 0.00 0.00 0.00 2.66
336 337 8.650143 AACATTCCATAATTGTAACTCCAACT 57.350 30.769 0.00 0.00 0.00 3.16
337 338 9.783256 GTAACATTCCATAATTGTAACTCCAAC 57.217 33.333 0.00 0.00 0.00 3.77
338 339 9.521841 TGTAACATTCCATAATTGTAACTCCAA 57.478 29.630 0.00 0.00 0.00 3.53
339 340 9.693739 ATGTAACATTCCATAATTGTAACTCCA 57.306 29.630 0.00 0.00 0.00 3.86
342 343 8.836413 CGGATGTAACATTCCATAATTGTAACT 58.164 33.333 0.00 0.00 31.99 2.24
343 344 8.073768 CCGGATGTAACATTCCATAATTGTAAC 58.926 37.037 0.00 0.00 31.99 2.50
344 345 7.229707 CCCGGATGTAACATTCCATAATTGTAA 59.770 37.037 0.73 0.00 31.99 2.41
345 346 6.712998 CCCGGATGTAACATTCCATAATTGTA 59.287 38.462 0.73 0.00 31.99 2.41
346 347 5.534654 CCCGGATGTAACATTCCATAATTGT 59.465 40.000 0.73 0.00 31.99 2.71
347 348 5.048083 CCCCGGATGTAACATTCCATAATTG 60.048 44.000 0.73 0.00 31.99 2.32
348 349 5.076873 CCCCGGATGTAACATTCCATAATT 58.923 41.667 0.73 0.00 31.99 1.40
349 350 4.662278 CCCCGGATGTAACATTCCATAAT 58.338 43.478 0.73 0.00 31.99 1.28
350 351 3.749310 GCCCCGGATGTAACATTCCATAA 60.749 47.826 0.73 0.00 31.99 1.90
351 352 2.224670 GCCCCGGATGTAACATTCCATA 60.225 50.000 0.73 0.00 31.99 2.74
352 353 1.478654 GCCCCGGATGTAACATTCCAT 60.479 52.381 0.73 0.00 31.99 3.41
353 354 0.106918 GCCCCGGATGTAACATTCCA 60.107 55.000 0.73 0.00 31.99 3.53
354 355 0.106918 TGCCCCGGATGTAACATTCC 60.107 55.000 0.73 0.00 0.00 3.01
355 356 1.981256 ATGCCCCGGATGTAACATTC 58.019 50.000 0.73 0.00 0.00 2.67
356 357 2.452600 AATGCCCCGGATGTAACATT 57.547 45.000 0.73 0.18 0.00 2.71
357 358 2.173782 TGTAATGCCCCGGATGTAACAT 59.826 45.455 0.73 0.00 0.00 2.71
358 359 1.560146 TGTAATGCCCCGGATGTAACA 59.440 47.619 0.73 0.00 0.00 2.41
359 360 2.218603 CTGTAATGCCCCGGATGTAAC 58.781 52.381 0.73 0.00 0.00 2.50
360 361 1.841277 ACTGTAATGCCCCGGATGTAA 59.159 47.619 0.73 0.00 0.00 2.41
361 362 1.502690 ACTGTAATGCCCCGGATGTA 58.497 50.000 0.73 0.00 0.00 2.29
362 363 1.502690 TACTGTAATGCCCCGGATGT 58.497 50.000 0.73 0.00 0.00 3.06
363 364 2.631160 TTACTGTAATGCCCCGGATG 57.369 50.000 0.73 0.00 0.00 3.51
364 365 4.164981 TCTATTACTGTAATGCCCCGGAT 58.835 43.478 20.42 0.00 0.00 4.18
365 366 3.576982 CTCTATTACTGTAATGCCCCGGA 59.423 47.826 20.42 9.35 0.00 5.14
366 367 3.306780 CCTCTATTACTGTAATGCCCCGG 60.307 52.174 20.42 10.88 0.00 5.73
367 368 3.323979 ACCTCTATTACTGTAATGCCCCG 59.676 47.826 20.42 8.46 0.00 5.73
368 369 4.102681 ACACCTCTATTACTGTAATGCCCC 59.897 45.833 20.42 0.00 0.00 5.80
369 370 5.291905 ACACCTCTATTACTGTAATGCCC 57.708 43.478 20.42 0.00 0.00 5.36
370 371 6.924060 CACTACACCTCTATTACTGTAATGCC 59.076 42.308 20.42 0.00 0.00 4.40
371 372 7.648510 GTCACTACACCTCTATTACTGTAATGC 59.351 40.741 20.42 0.00 0.00 3.56
372 373 7.856398 CGTCACTACACCTCTATTACTGTAATG 59.144 40.741 20.42 11.74 0.00 1.90
373 374 7.013083 CCGTCACTACACCTCTATTACTGTAAT 59.987 40.741 16.51 16.51 0.00 1.89
374 375 6.317140 CCGTCACTACACCTCTATTACTGTAA 59.683 42.308 2.26 2.26 0.00 2.41
375 376 5.819379 CCGTCACTACACCTCTATTACTGTA 59.181 44.000 0.00 0.00 0.00 2.74
376 377 4.639310 CCGTCACTACACCTCTATTACTGT 59.361 45.833 0.00 0.00 0.00 3.55
377 378 4.639310 ACCGTCACTACACCTCTATTACTG 59.361 45.833 0.00 0.00 0.00 2.74
378 379 4.639310 CACCGTCACTACACCTCTATTACT 59.361 45.833 0.00 0.00 0.00 2.24
382 383 2.291411 ACCACCGTCACTACACCTCTAT 60.291 50.000 0.00 0.00 0.00 1.98
420 421 2.237143 CTCTTACCTTCTCACCATGGCA 59.763 50.000 13.04 0.00 0.00 4.92
449 450 4.863548 TCAGATTTTCCTCATCCAAGCAT 58.136 39.130 0.00 0.00 0.00 3.79
473 474 3.087031 TCTCCTCACTTATCGTTCCGTT 58.913 45.455 0.00 0.00 0.00 4.44
480 481 4.755629 TCTTCCGTATCTCCTCACTTATCG 59.244 45.833 0.00 0.00 0.00 2.92
503 504 2.524394 ATCGGCCTATGTCCGCCT 60.524 61.111 0.00 0.00 46.05 5.52
513 514 1.079681 TAAACGCAACGATCGGCCT 60.080 52.632 20.98 0.98 0.00 5.19
633 637 9.561069 CCCTTGCTAGTTCAAATATATGTTACT 57.439 33.333 0.00 0.00 0.00 2.24
634 638 9.338622 ACCCTTGCTAGTTCAAATATATGTTAC 57.661 33.333 0.00 0.00 0.00 2.50
636 640 9.561069 CTACCCTTGCTAGTTCAAATATATGTT 57.439 33.333 0.00 0.00 0.00 2.71
637 641 8.934697 TCTACCCTTGCTAGTTCAAATATATGT 58.065 33.333 0.00 0.00 0.00 2.29
638 642 9.429359 CTCTACCCTTGCTAGTTCAAATATATG 57.571 37.037 0.00 0.00 0.00 1.78
639 643 8.598041 CCTCTACCCTTGCTAGTTCAAATATAT 58.402 37.037 0.00 0.00 0.00 0.86
640 644 7.567622 ACCTCTACCCTTGCTAGTTCAAATATA 59.432 37.037 0.00 0.00 0.00 0.86
641 645 6.387220 ACCTCTACCCTTGCTAGTTCAAATAT 59.613 38.462 0.00 0.00 0.00 1.28
642 646 5.724854 ACCTCTACCCTTGCTAGTTCAAATA 59.275 40.000 0.00 0.00 0.00 1.40
643 647 4.536489 ACCTCTACCCTTGCTAGTTCAAAT 59.464 41.667 0.00 0.00 0.00 2.32
644 648 3.908103 ACCTCTACCCTTGCTAGTTCAAA 59.092 43.478 0.00 0.00 0.00 2.69
645 649 3.517612 ACCTCTACCCTTGCTAGTTCAA 58.482 45.455 0.00 0.00 0.00 2.69
646 650 3.185880 ACCTCTACCCTTGCTAGTTCA 57.814 47.619 0.00 0.00 0.00 3.18
647 651 3.384146 GGTACCTCTACCCTTGCTAGTTC 59.616 52.174 4.06 0.00 37.08 3.01
648 652 3.372897 GGTACCTCTACCCTTGCTAGTT 58.627 50.000 4.06 0.00 37.08 2.24
649 653 3.029483 GGTACCTCTACCCTTGCTAGT 57.971 52.381 4.06 0.00 37.08 2.57
674 678 1.832366 TGGGGTGCAAATTGATGGATG 59.168 47.619 0.00 0.00 0.00 3.51
733 868 4.442706 CCGGACAATTTGACTAGTAGCAT 58.557 43.478 0.00 0.00 0.00 3.79
794 2165 1.727511 TTCGTGTCCGTGTCTTCCGT 61.728 55.000 0.00 0.00 35.01 4.69
886 2257 4.640789 ACACGATAGGCTAACTCTTCAG 57.359 45.455 0.00 0.00 43.77 3.02
887 2258 4.438336 CGAACACGATAGGCTAACTCTTCA 60.438 45.833 0.00 0.00 43.77 3.02
888 2259 4.036352 CGAACACGATAGGCTAACTCTTC 58.964 47.826 0.00 0.00 43.77 2.87
889 2260 3.693085 TCGAACACGATAGGCTAACTCTT 59.307 43.478 0.00 0.00 43.77 2.85
892 2263 3.015327 AGTCGAACACGATAGGCTAACT 58.985 45.455 0.00 0.00 43.77 2.24
893 2264 3.417690 AGTCGAACACGATAGGCTAAC 57.582 47.619 0.00 0.00 43.77 2.34
894 2265 3.693085 AGAAGTCGAACACGATAGGCTAA 59.307 43.478 0.00 0.00 43.77 3.09
997 2368 2.496341 CTTCGAGAGCGCCATGGA 59.504 61.111 18.40 0.00 37.46 3.41
1602 2994 3.496160 GGGCAAGGATACGATATGTGGTT 60.496 47.826 0.00 0.00 46.39 3.67
1614 3006 2.040884 AGGGAGCGGGCAAGGATA 60.041 61.111 0.00 0.00 0.00 2.59
1872 3264 0.396695 AGCAATCCATGGCCTCCTTG 60.397 55.000 6.96 6.66 0.00 3.61
2142 3534 1.228337 TGCATCTGGTGTGCAGCTT 60.228 52.632 0.00 0.00 46.76 3.74
2270 3662 5.064452 CAGGACTCAATGAGCAAGACATAAC 59.936 44.000 10.62 0.00 32.04 1.89
2322 3714 9.126151 TCAAACATCTTATTGAAGTAACCAACA 57.874 29.630 0.00 0.00 32.89 3.33
2374 3766 6.303839 AGCCACTTATGACTTTGTTAAAGGA 58.696 36.000 6.30 0.00 42.82 3.36
2491 3883 6.614160 CAACATTGATGTATGCTCTCAACAA 58.386 36.000 0.00 0.00 40.80 2.83
2574 3966 7.395489 AGAAGTGCCTTCAATTCATCAGTAAAT 59.605 33.333 14.76 0.00 46.40 1.40
2602 3994 0.326595 TCTTTCTGCAATGCCCCGTA 59.673 50.000 1.53 0.00 0.00 4.02
2604 3996 1.660560 CCTCTTTCTGCAATGCCCCG 61.661 60.000 1.53 0.00 0.00 5.73
2712 4104 1.065854 TCTTTAGCAAGAGCCTCTGCC 60.066 52.381 11.05 0.00 43.56 4.85
3251 4643 8.503458 AATTTATCTAGCCTGTGATCATATGC 57.497 34.615 10.99 10.99 0.00 3.14
3265 4657 8.499403 AGTGTGAAAAGGAGAATTTATCTAGC 57.501 34.615 0.00 0.00 38.96 3.42
3609 5009 7.214467 TGGTAAAGCTCAATTTTGAAGGTAG 57.786 36.000 0.00 0.00 36.64 3.18
3909 5333 4.304110 GTTTGACTGTGACCGAATACTGA 58.696 43.478 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.