Multiple sequence alignment - TraesCS3A01G170500
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS3A01G170500
chr3A
100.000
2828
0
0
1
2828
178256480
178253653
0.000000e+00
5223
1
TraesCS3A01G170500
chr3B
90.336
2204
108
28
1
2141
222803237
222805398
0.000000e+00
2793
2
TraesCS3A01G170500
chr3B
83.834
433
49
6
2404
2828
222813577
222813996
2.640000e-105
392
3
TraesCS3A01G170500
chr3D
91.356
2013
77
23
1
1954
152481651
152483625
0.000000e+00
2663
4
TraesCS3A01G170500
chr3D
93.750
848
45
5
1986
2828
152483706
152484550
0.000000e+00
1266
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS3A01G170500
chr3A
178253653
178256480
2827
True
5223.0
5223
100.000
1
2828
1
chr3A.!!$R1
2827
1
TraesCS3A01G170500
chr3B
222803237
222805398
2161
False
2793.0
2793
90.336
1
2141
1
chr3B.!!$F1
2140
2
TraesCS3A01G170500
chr3D
152481651
152484550
2899
False
1964.5
2663
92.553
1
2828
2
chr3D.!!$F1
2827
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
225
227
1.064017
TGTGTGAGGAAAAAGCCCTGT
60.064
47.619
0.00
0.00
33.36
4.00
F
776
787
1.529010
GCGTCACGTGACATAATTGCC
60.529
52.381
39.14
18.66
44.99
4.52
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1411
1464
0.109272
TTGTAAGCCGAGACGAGCAG
60.109
55.0
0.0
0.0
0.00
4.24
R
2345
2504
0.253160
TATGAGTTCCACCAGGGCCT
60.253
55.0
0.0
0.0
36.21
5.19
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
26
27
7.430502
CCTGCTTGATTTATCGATTCAACTTTC
59.569
37.037
1.71
0.00
0.00
2.62
37
39
4.447724
CGATTCAACTTTCGTCAGGAGAAA
59.552
41.667
0.00
0.00
36.34
2.52
42
44
1.623811
CTTTCGTCAGGAGAAAGGGGA
59.376
52.381
9.98
0.00
46.38
4.81
55
57
3.384467
AGAAAGGGGAATGTTGTGTTGTG
59.616
43.478
0.00
0.00
0.00
3.33
84
86
3.552604
GCACAAAGCACCTCGAAATTA
57.447
42.857
0.00
0.00
44.79
1.40
105
107
6.721571
TTAGCTAATTGGTTTCTTCTGTCG
57.278
37.500
0.86
0.00
0.00
4.35
119
121
4.923871
TCTTCTGTCGCAGTTCTTTGATAC
59.076
41.667
6.72
0.00
32.61
2.24
121
123
4.237724
TCTGTCGCAGTTCTTTGATACTG
58.762
43.478
6.72
0.00
43.58
2.74
186
188
5.039920
TGGTTGATCCATTAGACATCCTG
57.960
43.478
0.00
0.00
41.93
3.86
187
189
4.721274
TGGTTGATCCATTAGACATCCTGA
59.279
41.667
0.00
0.00
41.93
3.86
223
225
2.452600
TTGTGTGAGGAAAAAGCCCT
57.547
45.000
0.00
0.00
36.57
5.19
225
227
1.064017
TGTGTGAGGAAAAAGCCCTGT
60.064
47.619
0.00
0.00
33.36
4.00
288
290
6.252995
TGAATGTATTCTTACTTTGGGCCTT
58.747
36.000
4.53
0.00
37.67
4.35
289
291
6.723977
TGAATGTATTCTTACTTTGGGCCTTT
59.276
34.615
4.53
0.00
37.67
3.11
290
292
7.234577
TGAATGTATTCTTACTTTGGGCCTTTT
59.765
33.333
4.53
0.00
37.67
2.27
355
357
4.202567
GGGCTCCCAACAGATTATTATCCA
60.203
45.833
0.00
0.00
35.81
3.41
374
376
5.726980
TCCAAAATTTCTCCTCAACCATG
57.273
39.130
0.00
0.00
0.00
3.66
375
377
5.147032
TCCAAAATTTCTCCTCAACCATGT
58.853
37.500
0.00
0.00
0.00
3.21
376
378
6.310941
TCCAAAATTTCTCCTCAACCATGTA
58.689
36.000
0.00
0.00
0.00
2.29
409
411
6.215121
GTGATCCATTGTGAGAGACTGATAG
58.785
44.000
0.00
0.00
0.00
2.08
479
483
3.840831
ACACATATGCGAGCTGTGT
57.159
47.368
13.48
13.48
46.37
3.72
580
591
6.543465
ACAACTGATGTCATGTTCTTTTCTGA
59.457
34.615
0.00
0.00
37.96
3.27
697
708
7.202526
TCTTGCAGTGTTTCCTTGAATAAAAG
58.797
34.615
0.00
0.00
0.00
2.27
755
766
2.358957
TGCATGAGTTACTCCATGCAC
58.641
47.619
29.80
15.48
43.09
4.57
776
787
1.529010
GCGTCACGTGACATAATTGCC
60.529
52.381
39.14
18.66
44.99
4.52
784
795
3.609853
GTGACATAATTGCCTGGTCTGA
58.390
45.455
0.00
0.00
0.00
3.27
918
959
4.621510
CGTAAACCCTACTTCCACCTTACC
60.622
50.000
0.00
0.00
0.00
2.85
983
1024
2.573915
TCTCTCTCCTCTCTGCACTGTA
59.426
50.000
0.00
0.00
0.00
2.74
984
1025
2.945008
CTCTCTCCTCTCTGCACTGTAG
59.055
54.545
0.00
0.00
0.00
2.74
985
1026
2.573915
TCTCTCCTCTCTGCACTGTAGA
59.426
50.000
0.00
0.00
0.00
2.59
986
1027
2.682856
CTCTCCTCTCTGCACTGTAGAC
59.317
54.545
0.00
0.00
0.00
2.59
987
1028
2.040412
TCTCCTCTCTGCACTGTAGACA
59.960
50.000
0.00
0.00
0.00
3.41
1411
1464
2.015382
CAGCAGCAGCAGCAGATAC
58.985
57.895
12.92
0.00
45.49
2.24
1777
1853
7.125811
TGGTGGATATATATGGGCTTCTTCTAC
59.874
40.741
0.00
0.00
0.00
2.59
1782
1858
0.179108
ATGGGCTTCTTCTACGCGTC
60.179
55.000
18.63
0.00
0.00
5.19
1791
1868
1.519758
CTTCTACGCGTCGTGTTTTGT
59.480
47.619
18.63
0.00
41.39
2.83
1794
1871
3.111838
TCTACGCGTCGTGTTTTGTAAA
58.888
40.909
18.63
0.00
41.39
2.01
1855
1932
2.903798
CAGTGAGAGAAGATGAAGGCC
58.096
52.381
0.00
0.00
0.00
5.19
1856
1933
1.836802
AGTGAGAGAAGATGAAGGCCC
59.163
52.381
0.00
0.00
0.00
5.80
1857
1934
1.134250
GTGAGAGAAGATGAAGGCCCC
60.134
57.143
0.00
0.00
0.00
5.80
1858
1935
1.207791
GAGAGAAGATGAAGGCCCCA
58.792
55.000
0.00
0.00
0.00
4.96
1859
1936
1.561542
GAGAGAAGATGAAGGCCCCAA
59.438
52.381
0.00
0.00
0.00
4.12
1860
1937
1.995542
AGAGAAGATGAAGGCCCCAAA
59.004
47.619
0.00
0.00
0.00
3.28
1861
1938
2.095461
GAGAAGATGAAGGCCCCAAAC
58.905
52.381
0.00
0.00
0.00
2.93
1862
1939
1.186200
GAAGATGAAGGCCCCAAACC
58.814
55.000
0.00
0.00
0.00
3.27
1863
1940
0.252239
AAGATGAAGGCCCCAAACCC
60.252
55.000
0.00
0.00
0.00
4.11
1864
1941
1.149133
AGATGAAGGCCCCAAACCCT
61.149
55.000
0.00
0.00
0.00
4.34
1865
1942
0.629058
GATGAAGGCCCCAAACCCTA
59.371
55.000
0.00
0.00
0.00
3.53
1866
1943
0.631212
ATGAAGGCCCCAAACCCTAG
59.369
55.000
0.00
0.00
0.00
3.02
1867
1944
1.306633
GAAGGCCCCAAACCCTAGG
59.693
63.158
0.06
0.06
0.00
3.02
1868
1945
2.856039
GAAGGCCCCAAACCCTAGGC
62.856
65.000
2.05
0.00
44.99
3.93
1869
1946
3.347590
GGCCCCAAACCCTAGGCT
61.348
66.667
2.05
0.00
45.07
4.58
1870
1947
2.043953
GCCCCAAACCCTAGGCTG
60.044
66.667
2.05
0.00
42.34
4.85
1871
1948
2.612493
GCCCCAAACCCTAGGCTGA
61.612
63.158
2.05
0.00
42.34
4.26
1872
1949
1.303282
CCCCAAACCCTAGGCTGAC
59.697
63.158
2.05
0.00
0.00
3.51
1873
1950
1.208165
CCCCAAACCCTAGGCTGACT
61.208
60.000
2.05
0.00
0.00
3.41
1874
1951
1.580059
CCCAAACCCTAGGCTGACTA
58.420
55.000
2.05
0.00
0.00
2.59
1875
1952
1.209747
CCCAAACCCTAGGCTGACTAC
59.790
57.143
2.05
0.00
0.00
2.73
1893
1970
7.259290
TGACTACAGAAATTCAACTGTTTCC
57.741
36.000
14.72
7.72
43.52
3.13
2176
2331
6.595716
AGAACCTCAGTTGCATTCAGTATTAC
59.404
38.462
0.00
0.00
35.94
1.89
2211
2366
3.119459
AGCACATGAACTGGAGTAGTACG
60.119
47.826
0.00
0.00
39.18
3.67
2236
2394
6.595682
CCTCACAAGTCACAAATATAGGGAT
58.404
40.000
0.00
0.00
0.00
3.85
2252
2410
9.762381
AATATAGGGATTAAAAACACAGGAACA
57.238
29.630
0.00
0.00
0.00
3.18
2254
2412
5.454966
AGGGATTAAAAACACAGGAACAGT
58.545
37.500
0.00
0.00
0.00
3.55
2255
2413
5.897250
AGGGATTAAAAACACAGGAACAGTT
59.103
36.000
0.00
0.00
0.00
3.16
2276
2435
1.359474
AGAGTAGCTTGGAGGGACAGA
59.641
52.381
0.00
0.00
0.00
3.41
2283
2442
2.260822
CTTGGAGGGACAGAAGGAGAA
58.739
52.381
0.00
0.00
0.00
2.87
2286
2445
0.174617
GAGGGACAGAAGGAGAAGCG
59.825
60.000
0.00
0.00
0.00
4.68
2291
2450
0.394565
ACAGAAGGAGAAGCGTTGCT
59.605
50.000
0.00
0.00
42.56
3.91
2319
2478
6.828502
TGTATTGCTACTCGATGAAATCAC
57.171
37.500
0.00
0.00
45.97
3.06
2326
2485
7.142021
TGCTACTCGATGAAATCACTAAGATC
58.858
38.462
0.00
0.00
45.97
2.75
2337
2496
9.521503
TGAAATCACTAAGATCATCTAAACTCG
57.478
33.333
0.00
0.00
35.39
4.18
2345
2504
7.392494
AAGATCATCTAAACTCGTGAGTACA
57.608
36.000
2.42
0.00
41.58
2.90
2356
2515
1.918293
TGAGTACAGGCCCTGGTGG
60.918
63.158
16.70
0.00
35.51
4.61
2361
2520
1.198759
TACAGGCCCTGGTGGAACTC
61.199
60.000
16.70
0.00
35.51
3.01
2375
2534
5.874810
TGGTGGAACTCATAAAGATTTCTCG
59.125
40.000
0.00
0.00
36.47
4.04
2377
2536
5.582665
GTGGAACTCATAAAGATTTCTCGCT
59.417
40.000
0.00
0.00
36.47
4.93
2380
2539
7.492669
TGGAACTCATAAAGATTTCTCGCTAAG
59.507
37.037
0.00
0.00
36.47
2.18
2391
2550
0.179161
CTCGCTAAGTGTGACCGAGG
60.179
60.000
0.00
0.00
41.04
4.63
2392
2551
1.153823
CGCTAAGTGTGACCGAGGG
60.154
63.158
0.00
0.00
0.00
4.30
2395
2554
1.404315
GCTAAGTGTGACCGAGGGAAG
60.404
57.143
0.00
0.00
0.00
3.46
2399
2558
1.075050
AGTGTGACCGAGGGAAGACTA
59.925
52.381
0.00
0.00
0.00
2.59
2404
2563
3.385111
GTGACCGAGGGAAGACTAATGAT
59.615
47.826
0.00
0.00
0.00
2.45
2405
2564
4.030913
TGACCGAGGGAAGACTAATGATT
58.969
43.478
0.00
0.00
0.00
2.57
2406
2565
5.068723
GTGACCGAGGGAAGACTAATGATTA
59.931
44.000
0.00
0.00
0.00
1.75
2445
2604
3.494924
CCACAAACTGGAGATGACTCACA
60.495
47.826
0.00
0.00
43.95
3.58
2450
2609
6.014242
ACAAACTGGAGATGACTCACAATAGA
60.014
38.462
0.00
0.00
44.22
1.98
2479
2638
2.076863
CAGACCGGTTGGATCAAACTC
58.923
52.381
9.42
3.04
39.21
3.01
2581
2740
2.555325
CAAATATCAGCATGCGGATGGT
59.445
45.455
34.46
23.16
41.09
3.55
2651
2810
4.274147
TCCTTGTGCTACAACCTCAAAAA
58.726
39.130
0.00
0.00
33.96
1.94
2669
2828
8.958043
CCTCAAAAAGAAACTGAAAATTCTACG
58.042
33.333
0.00
0.00
34.90
3.51
2672
2831
7.914537
AAAAGAAACTGAAAATTCTACGCTG
57.085
32.000
0.00
0.00
34.90
5.18
2708
2867
2.034558
AGATGTTCACCAAAACCAAGCG
59.965
45.455
0.00
0.00
0.00
4.68
2731
2890
0.177141
TACTGCGGGAACAGCCATAC
59.823
55.000
0.00
0.00
41.60
2.39
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
26
27
1.279271
ACATTCCCCTTTCTCCTGACG
59.721
52.381
0.00
0.00
0.00
4.35
37
39
1.216678
TCCACAACACAACATTCCCCT
59.783
47.619
0.00
0.00
0.00
4.79
42
44
5.163468
TGCATAAACTCCACAACACAACATT
60.163
36.000
0.00
0.00
0.00
2.71
84
86
3.437049
GCGACAGAAGAAACCAATTAGCT
59.563
43.478
0.00
0.00
0.00
3.32
105
107
4.253685
TGGCTACAGTATCAAAGAACTGC
58.746
43.478
2.52
0.00
45.65
4.40
119
121
2.062971
AAGAATGGGCATGGCTACAG
57.937
50.000
19.78
0.00
0.00
2.74
121
123
1.410153
CCAAAGAATGGGCATGGCTAC
59.590
52.381
19.78
3.75
46.27
3.58
185
187
9.447157
TCACACAATCACACTATTATTTCATCA
57.553
29.630
0.00
0.00
0.00
3.07
186
188
9.926751
CTCACACAATCACACTATTATTTCATC
57.073
33.333
0.00
0.00
0.00
2.92
187
189
8.896744
CCTCACACAATCACACTATTATTTCAT
58.103
33.333
0.00
0.00
0.00
2.57
223
225
4.612264
GGTCACTTACCCAGAAGTAACA
57.388
45.455
0.00
0.00
43.16
2.41
288
290
4.517453
ACTTATGTGTTAGCGAGCCAAAAA
59.483
37.500
0.00
0.00
0.00
1.94
289
291
4.069304
ACTTATGTGTTAGCGAGCCAAAA
58.931
39.130
0.00
0.00
0.00
2.44
290
292
3.435327
CACTTATGTGTTAGCGAGCCAAA
59.565
43.478
0.62
0.00
39.24
3.28
355
357
8.960591
CATACTACATGGTTGAGGAGAAATTTT
58.039
33.333
0.00
0.00
0.00
1.82
374
376
4.745125
CACAATGGATCACCGACATACTAC
59.255
45.833
0.00
0.00
39.42
2.73
375
377
4.647399
TCACAATGGATCACCGACATACTA
59.353
41.667
0.00
0.00
39.42
1.82
376
378
3.450817
TCACAATGGATCACCGACATACT
59.549
43.478
0.00
0.00
39.42
2.12
409
411
3.626028
AACCGTTTCATTCTGACTTGC
57.374
42.857
0.00
0.00
0.00
4.01
453
457
5.200454
CAGCTCGCATATGTGTTCAATAAC
58.800
41.667
15.62
0.00
36.07
1.89
456
460
3.064408
CACAGCTCGCATATGTGTTCAAT
59.936
43.478
15.62
0.00
39.54
2.57
457
461
2.416202
CACAGCTCGCATATGTGTTCAA
59.584
45.455
15.62
0.00
39.54
2.69
470
474
4.896562
TCGTTTACAAATACACAGCTCG
57.103
40.909
0.00
0.00
0.00
5.03
580
591
3.321111
GCAATCCTTCCAGAATGCATCAT
59.679
43.478
0.00
0.00
41.42
2.45
776
787
6.528423
CGTAGTAGTTTCATTTCTCAGACCAG
59.472
42.308
0.00
0.00
0.00
4.00
784
795
7.879070
TCAGTACACGTAGTAGTTTCATTTCT
58.121
34.615
0.00
0.00
41.61
2.52
918
959
4.268644
CGTATATATGCGCTCCCAAAGATG
59.731
45.833
9.73
0.00
0.00
2.90
1411
1464
0.109272
TTGTAAGCCGAGACGAGCAG
60.109
55.000
0.00
0.00
0.00
4.24
1777
1853
1.377505
GCATTTACAAAACACGACGCG
59.622
47.619
3.53
3.53
0.00
6.01
1782
1858
3.485378
CACACCTGCATTTACAAAACACG
59.515
43.478
0.00
0.00
0.00
4.49
1791
1868
1.270571
TGAGCGTCACACCTGCATTTA
60.271
47.619
0.00
0.00
0.00
1.40
1794
1871
1.375140
CTGAGCGTCACACCTGCAT
60.375
57.895
0.00
0.00
0.00
3.96
1836
1913
1.836802
GGGCCTTCATCTTCTCTCACT
59.163
52.381
0.84
0.00
0.00
3.41
1837
1914
1.134250
GGGGCCTTCATCTTCTCTCAC
60.134
57.143
0.84
0.00
0.00
3.51
1840
1917
1.673767
TTGGGGCCTTCATCTTCTCT
58.326
50.000
0.84
0.00
0.00
3.10
1855
1932
1.209747
GTAGTCAGCCTAGGGTTTGGG
59.790
57.143
11.77
0.00
0.00
4.12
1856
1933
1.906574
TGTAGTCAGCCTAGGGTTTGG
59.093
52.381
11.77
0.00
0.00
3.28
1857
1934
2.832129
TCTGTAGTCAGCCTAGGGTTTG
59.168
50.000
11.77
0.66
41.10
2.93
1858
1935
3.185880
TCTGTAGTCAGCCTAGGGTTT
57.814
47.619
11.77
2.61
41.10
3.27
1859
1936
2.921834
TCTGTAGTCAGCCTAGGGTT
57.078
50.000
11.77
0.00
41.10
4.11
1860
1937
2.921834
TTCTGTAGTCAGCCTAGGGT
57.078
50.000
7.93
7.93
41.10
4.34
1861
1938
4.162320
TGAATTTCTGTAGTCAGCCTAGGG
59.838
45.833
11.72
0.00
41.10
3.53
1862
1939
5.344743
TGAATTTCTGTAGTCAGCCTAGG
57.655
43.478
3.67
3.67
41.10
3.02
1863
1940
6.312426
CAGTTGAATTTCTGTAGTCAGCCTAG
59.688
42.308
0.00
0.00
41.10
3.02
1864
1941
6.166279
CAGTTGAATTTCTGTAGTCAGCCTA
58.834
40.000
0.00
0.00
41.10
3.93
1865
1942
4.999950
CAGTTGAATTTCTGTAGTCAGCCT
59.000
41.667
0.00
0.00
41.10
4.58
1866
1943
4.757149
ACAGTTGAATTTCTGTAGTCAGCC
59.243
41.667
9.16
0.00
42.13
4.85
1867
1944
5.931441
ACAGTTGAATTTCTGTAGTCAGC
57.069
39.130
9.16
0.00
42.13
4.26
1868
1945
7.227512
AGGAAACAGTTGAATTTCTGTAGTCAG
59.772
37.037
10.64
0.00
42.95
3.51
1869
1946
7.054124
AGGAAACAGTTGAATTTCTGTAGTCA
58.946
34.615
10.64
0.00
42.95
3.41
1870
1947
7.497925
AGGAAACAGTTGAATTTCTGTAGTC
57.502
36.000
10.64
10.69
42.95
2.59
1871
1948
9.003658
CATAGGAAACAGTTGAATTTCTGTAGT
57.996
33.333
10.64
4.69
42.95
2.73
1872
1949
9.219603
TCATAGGAAACAGTTGAATTTCTGTAG
57.780
33.333
10.64
0.00
42.95
2.74
1873
1950
9.567776
TTCATAGGAAACAGTTGAATTTCTGTA
57.432
29.630
10.64
0.00
42.95
2.74
1874
1951
8.463930
TTCATAGGAAACAGTTGAATTTCTGT
57.536
30.769
0.00
6.21
45.21
3.41
1875
1952
9.918630
ATTTCATAGGAAACAGTTGAATTTCTG
57.081
29.630
4.42
5.21
45.22
3.02
1975
2117
2.677836
GCAGAAGAGAAACACACACACA
59.322
45.455
0.00
0.00
0.00
3.72
1976
2118
2.939103
AGCAGAAGAGAAACACACACAC
59.061
45.455
0.00
0.00
0.00
3.82
1977
2119
3.266510
AGCAGAAGAGAAACACACACA
57.733
42.857
0.00
0.00
0.00
3.72
1978
2120
3.623060
TCAAGCAGAAGAGAAACACACAC
59.377
43.478
0.00
0.00
0.00
3.82
1979
2121
3.872696
TCAAGCAGAAGAGAAACACACA
58.127
40.909
0.00
0.00
0.00
3.72
1980
2122
3.303659
GCTCAAGCAGAAGAGAAACACAC
60.304
47.826
0.00
0.00
41.59
3.82
1981
2123
2.874701
GCTCAAGCAGAAGAGAAACACA
59.125
45.455
0.00
0.00
41.59
3.72
1982
2124
3.534524
GCTCAAGCAGAAGAGAAACAC
57.465
47.619
0.00
0.00
41.59
3.32
2081
2236
9.525409
GCTTGAAATAATCTCTAAAATGCATGT
57.475
29.630
0.00
0.00
0.00
3.21
2176
2331
2.827322
TCATGTGCTTTTCCTGAATGGG
59.173
45.455
0.00
0.00
36.20
4.00
2211
2366
4.576463
CCCTATATTTGTGACTTGTGAGGC
59.424
45.833
0.00
0.00
0.00
4.70
2236
2394
9.321562
CTACTCTAACTGTTCCTGTGTTTTTAA
57.678
33.333
0.00
0.00
0.00
1.52
2252
2410
3.245658
TGTCCCTCCAAGCTACTCTAACT
60.246
47.826
0.00
0.00
0.00
2.24
2254
2412
3.011369
TCTGTCCCTCCAAGCTACTCTAA
59.989
47.826
0.00
0.00
0.00
2.10
2255
2413
2.581246
TCTGTCCCTCCAAGCTACTCTA
59.419
50.000
0.00
0.00
0.00
2.43
2283
2442
2.489329
AGCAATACATCAAAGCAACGCT
59.511
40.909
0.00
0.00
42.56
5.07
2286
2445
5.063438
TCGAGTAGCAATACATCAAAGCAAC
59.937
40.000
0.00
0.00
0.00
4.17
2291
2450
7.841915
TTTCATCGAGTAGCAATACATCAAA
57.158
32.000
0.00
0.00
0.00
2.69
2294
2453
7.383572
AGTGATTTCATCGAGTAGCAATACATC
59.616
37.037
0.00
0.00
0.00
3.06
2319
2478
8.613482
TGTACTCACGAGTTTAGATGATCTTAG
58.387
37.037
4.79
0.00
42.54
2.18
2326
2485
4.106197
GCCTGTACTCACGAGTTTAGATG
58.894
47.826
4.79
0.00
42.54
2.90
2337
2496
1.296715
CACCAGGGCCTGTACTCAC
59.703
63.158
30.68
0.00
0.00
3.51
2345
2504
0.253160
TATGAGTTCCACCAGGGCCT
60.253
55.000
0.00
0.00
36.21
5.19
2356
2515
8.324567
CACTTAGCGAGAAATCTTTATGAGTTC
58.675
37.037
0.95
0.95
46.53
3.01
2361
2520
7.394872
GTCACACTTAGCGAGAAATCTTTATG
58.605
38.462
0.00
0.00
0.00
1.90
2375
2534
0.606604
TTCCCTCGGTCACACTTAGC
59.393
55.000
0.00
0.00
0.00
3.09
2377
2536
1.891150
GTCTTCCCTCGGTCACACTTA
59.109
52.381
0.00
0.00
0.00
2.24
2380
2539
1.542492
TAGTCTTCCCTCGGTCACAC
58.458
55.000
0.00
0.00
0.00
3.82
2399
2558
8.530311
TGGCAACATAGAATTTGTGTAATCATT
58.470
29.630
0.00
0.00
46.17
2.57
2445
2604
2.271800
CGGTCTGAGCGCTTTTCTATT
58.728
47.619
13.26
0.00
30.39
1.73
2450
2609
1.227853
AACCGGTCTGAGCGCTTTT
60.228
52.632
22.59
12.32
37.85
2.27
2479
2638
1.271001
TGACCCTTGTCATGCACTCTG
60.271
52.381
0.00
0.00
46.40
3.35
2617
2776
8.903820
GTTGTAGCACAAGGAATCCTAATATTT
58.096
33.333
0.46
0.00
39.00
1.40
2651
2810
6.566753
GCTTCAGCGTAGAATTTTCAGTTTCT
60.567
38.462
0.00
0.00
36.26
2.52
2669
2828
5.303971
ACATCTGAGTTATATGGCTTCAGC
58.696
41.667
0.00
0.00
41.14
4.26
2672
2831
6.203723
GGTGAACATCTGAGTTATATGGCTTC
59.796
42.308
0.00
0.00
0.00
3.86
2708
2867
1.523938
GCTGTTCCCGCAGTATCCC
60.524
63.158
0.00
0.00
38.65
3.85
2731
2890
3.043586
CCGATGAGACTCGTTAAATCCG
58.956
50.000
0.00
0.00
36.93
4.18
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.