>input_sequence_67715
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---ATGACCGGCGGCGTGAACGGCAACGGCGGAGGAGGA------GGCGGCAACGGCGGGGCGTGCGCGGTGTGCAAGCA
CCAGCGGCGCAAGTGCGAGCCCAACTGCGAGCTGGCCGCCTACTTCCCGGCCAACAGGATGAACGACTTCCGCGCGCTGC
ACCTCGTCTTCGGGGTGGCCAACCTCACCAAGCTCATCAAGGCCAACGCCACCGAGGCGGCGCGGCGGCGCGCCGCCGAG
ACGCTGACGTGGGAGGCGCGGTGGCGCGAGCGCGACCCCTCCGAGGGGTGCTACCGCGAGGTCTCCTGCCTCCGCCGCGA
GAACGCTGTGCTGCGCGCCGAGAACGCCGCGCTCAGGCGCCGGGCCAACCAGTGCGCGTGCTGCGCCACCACGTTGCAG-
--CAGCAGCAGCAGCAGCAGATACTGCTCGTCTCGGCTTACAACAACGGCGCCCGGCCCCCCGGCGGCGTGCTGCACGGC
GCCAGCGCCGGGGTCGTGCCCGGCGGCTTCTACAGCGGCAATGCCGGCGCCGTCCGTGCCGCCAATGGCAACGGGGCGAT
GCCCGCGCGGCCTCACGTGTCAGCTCCGGCGCCGCAGACGACGATGGCCGGGTACGCGCAGGGGGATCGCCACCACGCCG
CGTCCGGCGGAGCGAACGGCACCGGCGC---------------AGCTGGTCAGGCGGAGCCCAGGGAGAAGAGCAGCGCG
AGGTAAGTTGAGGACGCTTCTCATTAATTCTTCCGTTGAGGTGGAGGTTTGCATTGCATGGTGGATATATAT--------
GGGCTTCTTCTACGCGTCGTGT-TTTGTAAATGCAGGTGTGACGCTCAGCGCACAGCTAGCTAG----------------
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>chr3A_1_TraesCS3A01G170500
CCTGCTTGATTTATCGATTCAACTTTCGTCAGGAGAA-AGGGGAATGTTGTGTTGTGGAGTTTATGCACAAAGCACCTCG
AAATTAGCTAATTGGTTTCTTCTGTCGCAGTTCTTTGATACTGTAGCCATGCCCATTCTTTGGGTGAATGGATCAAATTT
TATGGTGGTTGATCCATTAGACATCCTGATGAAATAATAGTGTGATTGTGTGAGGAAAAAGCCCTGTTACTTCTGGGTAA
GTGACCACCGAACAAGATATAAAGATGAATGTATTCTTACTTTGGGCCTTTTTTGGCTCGCTAACACATAAGTGAGAAGT
GCGATTGTGCTGTGGGCTCCCAACAGATTATTATCCAAAATTTCTCCTCAACCATGTAGTATGTCGGTGATCCATTGTGA
GAGACTGATAGCAAGTCAGAATGAAACGGTTTGTTTCACCTGATTCTA--TTTTTTGTTATTGAACACATATGCGAGCTG
TGTATTTGTAAACGATTAATCATAATGTTGTGCTGTAC-------AATTGAAGATGGCCTCTCCATTTTTCTGAAGAAGA
CATGTACAACTGATGTCATGTTCTTTTCTGATGATGCATTCTGGAAGGATTGCTGTTCAGGTACAAGATGTACACATCAG
TGCTTTCTTATTTTCTTAGTTTAGTGGATCACACATGTCTCATCTTGCAGTGTTTCCTTGAATAAAAGTGCATTTTTGTA
TTGCATAGAAACTGAAGACACGTGGTGCATGAGTTACTCCATGCACGCGTCACGTGACATAATTGCCTGGTCTGAGAAAT
GAAACTACTACGTGTACTGA--------TTATATGTGT----------------------ACGATGTATCAGTAGAAGTT
TCCATGGGCCTATCTATTTGTTCGGTGAAATCTTCCTGTGAGCAACCTACAAAACCGTAAACCCTACTTCCACCTTACCA
TCTTTGGGAGCGCATATATACGCGTACAATCGTACACACGCATCTCTCTCCTCTCTGCACTGTAGACAGCGCCGGG---C
GACATGACCGGCGGCGTGAACGGCAACGGCGGAGGAGGA------GGCGGCAACGGCGGGGCGTGCGCGGTGTGCAAGCA
CCAGCGGCGCAAGTGCGAGCCCAACTGCGAGCTGGCCGCCTACTTCCCGGCCAACAGGATGAACGACTTCCGCGCGCTGC
ACCTCGTCTTCGGGGTGGCCAACCTCACCAAGCTCATCAAGGCCAACGCCACCGAGGCGGCGCGGCGGCGCGCCGCCGAG
ACGCTGACGTGGGAGGCGCGGTGGCGCGAGCGCGACCCCTCCGAGGGGTGCTACCGCGAGGTCTCCTGCCTCCGCCGCGA
GAACGCTGTGCTGCGCGCCGAGAACGCCGCGCTCAGGCGCCGGGCCAACCAGTGCGCGTGCTGCGCCACCACGTTGCAG-
--CAGCAGCAGCAGCAGCAGATACTGCTCGTCTCGGCTTACAACAACGGCGCCCGGCCCCCCGGCGGCGTGCTGCACGGC
GCCAGCGCCGGGGTCGTGCCCGGCGGCTTCTACAGCGGCAATGCCGGCGCCGTCCGTGCCGCCAATGGCAACGGGGCGAT
GCCCGCGCGGCCTCACGTGTCAGCTCCGGCGCCGCAGACGACGATGGCCGGGTACGCGCAGGGGGATCGCCACCACGCCG
CGTCCGGCGGAGCGAACGGCACCGGCGC---------------AGCTGGTCAGGCGGAGCCCAGGGAGAAGAGCAGCGCG
AGGTAAGTTGAGGACGCTTCTCATTAATTCTTCCGTTGAGGTGGAGGTTTGCATTGCATGGTGGATATATAT--------
GGGCTTCTTCTACGCGTCGTGT-TTTGTAAATGCAGGTGTGACGCTCAGCGCACAGCTAGCTAGCAGTGGGCAGTGAGAG
AAGATGAAGGCCCCAAACCCTAGGCTGACTACAGAAATTCAACTGTTTCCTATGAAATTCATGTCCTAAGTAGGAACAAG
CCCT---AAGTATTGGTTTTGGAATAAAAAGTAGGT---------TTAC-------------------------------
----------------------TTCATCTTTTTTTTTGTGTGTGTGTTTCTCTTCTGCT----------TGAGCAGGATA
TCTAAAGTTCAAAGTGTAAAAACTCAGCTTTGTATAACTGGTGATT---CATTTAATTAGAAGCCAGAAGATGATACATG
CATTTTAGAGATTATTTCAAGCTATGCTTGTTGATTTAAGCAGCTGGTCATCCTGCTGCAAATCTAGAACCTCAGTTGCA
TTCAGTATTACCCATTCAGGAAAAGCACATGAACTGGAGTAGTACGCCTCACAAGTCACAAATA---TAGGGATTAAAAA
CACAGGAACAGTTAGAGTAGCTT-GGAGGGACAGAAGGAGAAGCGTTGCTTTGATGTATTGCTACTCGATGAAATCACTA
AGATCATCTAAACTCGTGAGTACAGGCCCTGGTGGAACTCATAAAGATTTCTCGCTAAGTGTGACCGAGGGAAGACTAAT
GATTACACAAATTCTATGTTGCCACAAACTGGAGATGACTCACAATAGAAAAGCGCTCAGACCGGTTGGATCAAACTCAG
AGTGCATGACAAGGGTCATGGTTCATTCAAATCAACAATGACACAAATAAATGTGTCCGGTATTTTCTCAAGTAGTATCA
AATATCAGCATGCGGATGGTGATGCATGTTATATTCGATATTTCTAATAGGAACAAAATATTAGGATTCCTTGTGCTACA
ACCTCAAAAAGAAACTGAAAATTCTACGCTGAAGCCATATAACTCAGATGTTCACCAAAACCAAGCGGGATACTGCGGGA
ACAGCCATACGGATTTAACGAGTCTCATCGGGTACTGCTGCTTCACCCTCTCTTACCAAACCAGCATCACCATTGCTAAT
CAAGAGGAACCAAGATAAATATATCA
>chr3B_1
CCTGCTTGATTTGTCGATTCAACTTTGGTCAGGAGAA-GGGGC-ATGTTGTGTTGTTGAGCTTATGCACAAAGCACCTTG
AAATCGGCTAATTGGTTTATTCTGTCACAGTTCTTTGATATTATAGCCATGCCCATTCGTTGGGTGAATGGATCAAATTT
TATGGTGGTTGATCCATTAGACATCC---TGAAATAATAGTGTGATTGTGTGAGGAAAAAGCCCAGGTACTTCTGGGTAA
GTGACCACAGAACAAGATATAAAGATGAATGTGTTCTTACTTTGGGCCT---TTGGCTCGCTAACACATAAGTGAGAAGT
ATGATTGTGCTGTGGGCTCCCAACAGATTATTATCCGAAATTTCTCCTCAACC-------ATGTCGGTGATCCATTGTGA
GAGACTGATACCAAGTCAGAATGAAACGGTTTGTTTCACCTGATTTTTTTTTTTTTTTTGCTGAGCACATATGTGAGCTC
CGGATTTGTAAGCGATTAATCATAATGTTGTGCTGTAC-------AATTGAAGATGGCCTCTCCATTTTTCTGAAGAAGA
CAT--ACAACTGATGCCATGTTCTTTTCTGCTGATGCATTCTGGAAGGATTTCTGTTCAGGTACAAGATGTACACATCAG
TGCTTTCTTATTTTCTTAGTTTAGTGGATCACACATGTCTCATCTTGCAGTGTTTCCTTGAATAAAAATGCATTTTTGTA
TTGCATAGAAACTGAAGACACGTGGTGCATGCGTCACTCCATGCATGCGTCACGTGACATAATTGCATGGTCTGTGAAAT
GAAACTACTACGTGTACTGA--------TTATATGTGTGTATGT----------TTTTGTACGATGTATCAGTAGAAGTT
TCCATGGGCCTATCTATTTGTTCGGTGAAATCTTCCTGTGAGCAACCTACAAAACCGTAAACCCTACTTCCACCTTACTA
TCTTTGGGAGCGCATATATACGCGTAGAATCGTACACACGCATCTCTCTCCTCTCTGCACTG---TGCGTAGCCCGGACC
GACATGACCGGCGGCGTGAACGGCAACGGCGGAGGCGGGGGTGGGGGCGGCGGCGGCGGGGCGTGCGCGGTGTGCAAGCA
CCAGCGTCGCAAGTGCGAGCCCAACTGCGAGCTGGCCGCCTACTTCCCGGCCAACAGGATGAACGACTTCCGCGCGCTGC
ACCTCGTCTTCGGGGTGGCCAACCTCACCAAGCTCATCAAGGCCAACGCCACCGAGGCGGCGCGCCGCCGCGCCGCCGAG
ACGCTGACGTGGGAGGCGCGGTGGCGCGAGCGCGACCCCTCCGAGGGGTGCTACCGCGAGGTCTCCTGCCTCCGCCGCGA
GAACGCCGTGCTGCGCGCCGAGAACGCCGCGCTCAGGCGCCGGGCCGACCAGTGCGCGTGCTGCGCCACCACGTTGCACC
ACCAGCAGCAGCAGCAGCAGATATTGCTCGTCTCGGCTTACAACAACGGCGCCCGGCCCCCCGGCGGCGTGCTGCACGGC
GCCAGCACCGGGGTCGTGCCCGGCGGCTTCTACAGCGGCAATGCCGGCGCCGTCCGTGCTGCCAATGGCAACGGGCCGAT
GCCCGCGCGGCCTCACGTGTCAGCTCCGGCGCCGCAAACGACGATGGCCGGGTACGCGCAGGGCGACCGGCACCACGCCG
CGTCCGGCGGAGCGAACGGCGCCGGCGCGCCGAGGCCCGGGGCAGCTGGTCAGGCGGAGCCCAGAGAGAAGAGCAGCGCG
AGGTAAGATGAGGACGCTTCTCATTAATTCTTCCGTTGAGGTGTAGGTTTGCATTGCATGGTGGATATATATATATATAT
GGGCTTCTTCTATGCGTTGTGTGTTTGCAACTGCAGGTGTGACGCTCAGCGCACGGCTAGCTAGCAGTGGGCTATGGGAG
AAGATGAAGGC---------------------TGAAATTCAACTGTTTCTTACGAAATTCATGTACTAATTAGGAACGAG
CCCTACCAAGTATTGCTTCTGGAATAAAAAAAATAGGTTTCGCTGTTGC-------------------------------
----------------------TTCATCTTTTTTGTGC------------TTTTCTTCTGCCTGAGCAGTGAGCAGGATG
TCGAAAGTTC--AGTGTAAAACCCCAGCTTTGTATAACTGGTGATTTTTCATTTAATTAGAAGCTAGAAGATGACCCATG
CATCTTAGAGAATGTTCTAAGCCATGCTTGTTGATTTAAGCAGCTGGTCATCCTG-------------------------
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>chr3D_1
CCTGCTTGATTTATCGATTCAACTTTGGTCAGGAGAAAGGGGG-ATGTTGTGTTGTTGAGTTTATGCACAAAGCACCTCA
CAATTGGCTAATTGGTTTCTTCTGTCACAGTTCTTTGATATTATAGCCATGCCCATTCTTTGGGTGAATGGATCAAATTT
TATGGTGGTTGATCCATTAGACATCC---TGAAATAATAGAGTGATTGTGTGAGGAAAAAGCCCGGGTACTTTTGGGTAA
GTGACCGCAGAACAAGATATAAAGATGAATGTATTCTTACTTTGGGCCT---TTGGCTCGCTAACACATAAGTGAGAAGT
ATGATTGTGCTGTGGGCTCCCAACAGATTATTATCCGAAATTTCTCCTCAACCAT---GTATGTCGGTGGTCCATTGTGA
GAGACTGATACCAAGGCAGAATGAAACGGTTTGTTTCACCTGATTCTA--TTTTTTTTTGCTGAACACATATGTGAGCCG
TGGACTTGTAAACGATTAATCATAATGTTGTGTTGTACGGAGTATAATTGAAGATGGCCTCTCCATTTTTCTGAAGAAGA
CATGTACAACTGATGTCATGTTCTTTTCTGCTGATGCATTCTGGAAGGATTGCTGTTCAGGTACAAGATGTACACATCAG
TGCTTTCTTATTTTCTTAGTTTAGTGGATCACACATGTCTCATCTTGCAGTGTTTCCTTGAATAAAAATGCATTTTTGTA
TTGCATAGAAACTGAAGACACGTGTTGCATGAGTTACTCCATGCATGCGTCACGTGACATAATTGCATGGTCTGTGAAAT
GAAACTACTACGTGTACTGAACTACTGATTATATGTGTGGTTTTGCGCGTATGCTTTTGTACAATGTATCAGTAGAAGTT
TCCATGGGCCTATCTATTTGTTCGGTGAAATCTTCCTGTGAGCAACCTACAAAACCGCAAACCCTACTTCCACCTTACTA
TCTTTGGGAGCGCATATATACGCGTAGAATCGTACACACGCATCTCTCTCCTCTCTACACTGTGTTGCGTAGCCCGGACC
GACATGACCGGCGGCGTGAACGGCAACGGCGGAGGCGGTGGG------GGCGGCGGCGGGGCGTGCGCGGTGTGCAAGCA
CCAGCGGCGCAAGTGCGAGCCCAACTGCGAGCTGGCCGCCTACTTCCCGGCCAACAGGATGAACGACTTCCGCGCGCTGC
ACCTCGTCTTCGGGGTGGCCAACCTCACCAAGCTCATCAAGGCCAACGCCACCGAGGCGGCGCGCCGCCGCGCCGCCGAG
ACGCTGACGTGGGAGGCGCGGTGGCGCGAGCGCGACCCCTCCGAGGGGTGCTACCGCGAGGTCTCCTGCCTCCGCCGCGA
GAACGCCGTGCTGCGCGCCGAGAACGCCGCGCTCAGGCGCCGGGCCGACCAGTGCGCGTGCTGTGTCACCACGTTG----
--CAGCAGCAGCAGCAGCAGATATTGCTCGTCTCGGCTTACAACAACGGCGCCCGGCCCCCCGGCGGCGTGCTGCACGGG
GCCAGCGCCGGAGTCGTGCCCGGCGGCTTCTACAGCGGCAATGCCGGCGCCGTCCGCGCCGCCAATGGCAACGGGGCGAT
GCCCGCGCGCCCTCACGTGTCAGCTCCGGCGCCGCAGACGACGATGGTCGGATGCGCGCAGGGCGACCGGCACCACGCCG
CGTCCGGCGGAGCGAACGGCGCCGGCGCGCCGAGGCCCGGGGCAGCTGGTCAGGCGGAGCCCAGGGAGAAGAGCAGCGCG
AGGTAAGTTGAGGACGCTTCTCATT----CTTCCGTTGAGGTGGAGGTTTGCATTGCATGGTGGATATA------TATAT
GGGCTTCTTCTATGCGTTGTGTTTTTGCAACTGCAGGTGTGACGCTCAGCGCACAGCTAGCTAGCAGTGGGCTATGGGAG
AAGATGAAGGC---------------------AGAAATTCAACCGTTTCATATGAAATTCATGTCCTAAGTAGGAAAAAG
CCCT---AAGTGTTGGTTTTGGAATAAAAAGTACTCCCTCCGTCCCATAATATAATAGTGTCAAAAACGTTCTTATATTA
TGGGACGAAGGGAATACTAGCTTTACTCTTTTTTTTCT------------TCTTCTGCT----------TGAGCAGGACA
TCTAAAGTTCAAAGTGTAAAAACTCAGCTTTGTATAACTGGTGATT---CATTTAATTAGAAGCCAGAAGATGATTCATG
CAGTTTAGAGAC--TTTCAAGCTATACTTGTTGATTTAAGCAGCTGGTCATCCTGCTGCAAATCTAGAACCTCAGTTGCA
TTCAGTATTATCCATTCAGGAAAAGCACATGAACTGGAGTAGTACACCTCACAAGTCACAAATACTATAGGGACTAAAAA
CACAGGAACGGAGAGAGTAGCTTTGGAGGGACAGGAGGAGAGGCATTGCCTTAATGTATTGCTACTCGATGAAATCAATA
AGATTATCTAAACTCCTGAGTACGGGCCCTGGTGAAACTGATAAAGATTTCTCCCCAAATGTGACCGAGAAAAAACTTAT
GAGCGCACAAATTCTATGTCGGCACAAACTGGAGATGACTCACGATAGCAAAGCGCTCAGACCGGTTGGATCAAACTGAG
AGTGCATGACAAGGGTCATGGTTCATTCAAATCAACAATGACACAAATAAATGTGTCCAATATTTTCTCAAGTAGTATCA
AATATCAGCATGCGGATGGAGATGCATGTTATATTCGATATTTCTAATAGGAACAGAATATTAGGATTCCTTGTGCTACA
ACCTCAAAA-GAAACTGAAAATTCTACACTCAAGCCATATAACTCAGATGTTCACCAAAACCAAGCAGGATACTGCGGGA
ACAGCCATAGGGATTTAACGAGTCTCATCGGGTACTGCTGCTTCACCCTCTCTTACCAAACCAGCATCACCATTGCTAAT
CAAGAGGAACCAAGATAAATATATCA
>SNPs
--------------------------S-----------S----S------------S-----------------------
-----S--------------------S-------------S-S-------------------------------------
--------------------------SSS-----------------------------------S-S-------------
--------S----------------------------------------SSS----------------------------
SS----------------------------------S------------------SSS----------------------
----------S---------------------------------------------S--SS------------S------
--S-----------------------------------------------------------------------------
------------------------------S-------------------------------------------------
-------------------------------------------------------------------S------------
---------------------------------------------S--------------------S-------S-----
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------------------------------------------------------------------------------S-
--------------------------S------------------------------------SSSSS-SSS-SS-----
-----------------------------------S--S------------SS---------------------------
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----------------------------------------------------------------S--S------------
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------S---------------------------------------S-------------------------------S-
-----------------------S--------------------------------------------------------
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---------------------------------------------------------------S--S--S----------
--------------------S-----------------------------------------------------------
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------------S----S---------S--S-----------------------------------------SS--S---
-----------SSSSSSSSSSSSSSSSSSSSS-----------------S------------------------------
---------------------------------SSS-----------S--------------------------------
------------------------------------SSSSSSSSSSSSSS------------------------------
---------------------------------------------------------------------------S----
-----------S-S------------------------------------------------------------------
----------S----------------------------------S---------------------------S------
---------S-SS---------------------S------S--S----S--S------------------------S--
----S----------S-------S----------S----S-------------S-S--S----------SS--S---S--
--SSS--------------S-S---------------------S----S----------------------------S--
----------------------------------------------------------SS--------------------
-------------------S-----------------------------------S------------------------
---------S-----------------S--S-----------------------------------S-------------
---------S----------------------------------------------------------------------
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>forward_227
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----------------------------------------------TGTGTGAGGAAAAAGCCCTGT-------------
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>reverse_1464
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-----------------------CTGCTCGTCTCGGCTTACAA-------------------------------------
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>forward_787
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----------------------------------------------GCGTCACGTGACATAATTGCC-------------
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>reverse_2504
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-----------------------AGGCCCTGGTGGAACTCATA-------------------------------------
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