Multiple sequence alignment - TraesCS3A01G164400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G164400 chr3A 100.000 2858 0 0 1 2858 169292005 169289148 0.000000e+00 5278.0
1 TraesCS3A01G164400 chr3A 93.518 941 55 5 1920 2858 514094330 514093394 0.000000e+00 1395.0
2 TraesCS3A01G164400 chr3A 91.509 954 69 9 1914 2858 714398442 714397492 0.000000e+00 1303.0
3 TraesCS3A01G164400 chr3A 86.758 438 35 9 36 467 19525241 19524821 1.550000e-127 466.0
4 TraesCS3A01G164400 chr3B 95.190 1393 61 4 529 1916 235878635 235880026 0.000000e+00 2196.0
5 TraesCS3A01G164400 chr3B 100.000 29 0 0 176 204 752656504 752656532 1.000000e-03 54.7
6 TraesCS3A01G164400 chr3D 92.713 1441 64 13 489 1916 158449723 158451135 0.000000e+00 2041.0
7 TraesCS3A01G164400 chr3D 90.433 439 35 6 39 473 164539761 164540196 3.190000e-159 571.0
8 TraesCS3A01G164400 chr4D 93.045 949 57 6 1916 2858 223628643 223627698 0.000000e+00 1378.0
9 TraesCS3A01G164400 chr5D 92.373 944 66 5 1914 2855 438813378 438814317 0.000000e+00 1339.0
10 TraesCS3A01G164400 chr5D 89.545 440 41 5 38 472 541524003 541523564 1.160000e-153 553.0
11 TraesCS3A01G164400 chr5D 87.900 438 45 8 37 469 489252522 489252956 2.540000e-140 508.0
12 TraesCS3A01G164400 chr2D 92.161 944 68 4 1915 2854 326408182 326409123 0.000000e+00 1328.0
13 TraesCS3A01G164400 chr2D 92.161 944 64 5 1920 2858 470671024 470670086 0.000000e+00 1325.0
14 TraesCS3A01G164400 chr1D 91.605 941 72 7 1921 2858 320408063 320407127 0.000000e+00 1293.0
15 TraesCS3A01G164400 chr7D 90.221 951 83 7 1915 2858 181004478 181003531 0.000000e+00 1232.0
16 TraesCS3A01G164400 chr7D 94.444 36 1 1 105 140 83325594 83325560 1.000000e-03 54.7
17 TraesCS3A01G164400 chr1A 90.095 949 86 6 1916 2858 20253257 20254203 0.000000e+00 1225.0
18 TraesCS3A01G164400 chr5A 88.288 444 43 6 34 469 477543163 477542721 9.070000e-145 523.0
19 TraesCS3A01G164400 chr7A 89.100 422 37 8 36 448 148919767 148919346 1.520000e-142 516.0
20 TraesCS3A01G164400 chr7A 100.000 28 0 0 175 202 603526209 603526182 5.000000e-03 52.8
21 TraesCS3A01G164400 chr2A 89.487 390 31 7 36 420 535238660 535238276 4.280000e-133 484.0
22 TraesCS3A01G164400 chr5B 85.078 449 54 12 34 473 70157572 70157128 2.020000e-121 446.0
23 TraesCS3A01G164400 chr7B 82.921 445 47 10 34 473 19113899 19113479 9.670000e-100 374.0
24 TraesCS3A01G164400 chr2B 80.000 95 9 9 68 157 695894250 695894339 8.550000e-06 62.1
25 TraesCS3A01G164400 chr2B 80.000 95 9 9 68 157 695966955 695967044 8.550000e-06 62.1
26 TraesCS3A01G164400 chr6B 73.656 186 33 11 58 237 58308024 58307849 1.110000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G164400 chr3A 169289148 169292005 2857 True 5278 5278 100.000 1 2858 1 chr3A.!!$R2 2857
1 TraesCS3A01G164400 chr3A 514093394 514094330 936 True 1395 1395 93.518 1920 2858 1 chr3A.!!$R3 938
2 TraesCS3A01G164400 chr3A 714397492 714398442 950 True 1303 1303 91.509 1914 2858 1 chr3A.!!$R4 944
3 TraesCS3A01G164400 chr3B 235878635 235880026 1391 False 2196 2196 95.190 529 1916 1 chr3B.!!$F1 1387
4 TraesCS3A01G164400 chr3D 158449723 158451135 1412 False 2041 2041 92.713 489 1916 1 chr3D.!!$F1 1427
5 TraesCS3A01G164400 chr4D 223627698 223628643 945 True 1378 1378 93.045 1916 2858 1 chr4D.!!$R1 942
6 TraesCS3A01G164400 chr5D 438813378 438814317 939 False 1339 1339 92.373 1914 2855 1 chr5D.!!$F1 941
7 TraesCS3A01G164400 chr2D 326408182 326409123 941 False 1328 1328 92.161 1915 2854 1 chr2D.!!$F1 939
8 TraesCS3A01G164400 chr2D 470670086 470671024 938 True 1325 1325 92.161 1920 2858 1 chr2D.!!$R1 938
9 TraesCS3A01G164400 chr1D 320407127 320408063 936 True 1293 1293 91.605 1921 2858 1 chr1D.!!$R1 937
10 TraesCS3A01G164400 chr7D 181003531 181004478 947 True 1232 1232 90.221 1915 2858 1 chr7D.!!$R2 943
11 TraesCS3A01G164400 chr1A 20253257 20254203 946 False 1225 1225 90.095 1916 2858 1 chr1A.!!$F1 942

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
366 367 0.036732 GATCTGCTGTGTGGGGTTGA 59.963 55.0 0.0 0.0 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2164 2213 0.03601 ATCAACAACCTCCTCGCTGG 60.036 55.0 0.0 0.0 37.1 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 7.865706 AAATACACAACTTCTCAGAACTTGT 57.134 32.000 6.61 6.61 0.00 3.16
28 29 8.958119 AAATACACAACTTCTCAGAACTTGTA 57.042 30.769 10.94 4.33 0.00 2.41
29 30 7.948278 ATACACAACTTCTCAGAACTTGTAC 57.052 36.000 10.94 0.00 0.00 2.90
30 31 5.116882 ACACAACTTCTCAGAACTTGTACC 58.883 41.667 10.94 0.00 0.00 3.34
31 32 4.209288 CACAACTTCTCAGAACTTGTACCG 59.791 45.833 10.94 0.00 0.00 4.02
32 33 4.142004 ACAACTTCTCAGAACTTGTACCGT 60.142 41.667 9.90 0.00 0.00 4.83
33 34 5.068198 ACAACTTCTCAGAACTTGTACCGTA 59.932 40.000 9.90 0.00 0.00 4.02
34 35 5.979288 ACTTCTCAGAACTTGTACCGTAT 57.021 39.130 0.00 0.00 0.00 3.06
35 36 6.342338 ACTTCTCAGAACTTGTACCGTATT 57.658 37.500 0.00 0.00 0.00 1.89
36 37 6.756221 ACTTCTCAGAACTTGTACCGTATTT 58.244 36.000 0.00 0.00 0.00 1.40
37 38 7.215085 ACTTCTCAGAACTTGTACCGTATTTT 58.785 34.615 0.00 0.00 0.00 1.82
38 39 8.362639 ACTTCTCAGAACTTGTACCGTATTTTA 58.637 33.333 0.00 0.00 0.00 1.52
39 40 9.199982 CTTCTCAGAACTTGTACCGTATTTTAA 57.800 33.333 0.00 0.00 0.00 1.52
40 41 9.545105 TTCTCAGAACTTGTACCGTATTTTAAA 57.455 29.630 0.00 0.00 0.00 1.52
41 42 9.545105 TCTCAGAACTTGTACCGTATTTTAAAA 57.455 29.630 2.51 2.51 0.00 1.52
84 85 4.681074 TGGAGTTTCCAAAAATGTTCCC 57.319 40.909 0.00 0.00 45.00 3.97
85 86 3.068873 TGGAGTTTCCAAAAATGTTCCCG 59.931 43.478 0.00 0.00 45.00 5.14
86 87 3.069016 GGAGTTTCCAAAAATGTTCCCGT 59.931 43.478 0.00 0.00 36.28 5.28
87 88 4.442332 GGAGTTTCCAAAAATGTTCCCGTT 60.442 41.667 0.00 0.00 36.28 4.44
88 89 5.092554 AGTTTCCAAAAATGTTCCCGTTT 57.907 34.783 0.00 0.00 0.00 3.60
89 90 6.223351 AGTTTCCAAAAATGTTCCCGTTTA 57.777 33.333 0.00 0.00 0.00 2.01
90 91 6.641474 AGTTTCCAAAAATGTTCCCGTTTAA 58.359 32.000 0.00 0.00 0.00 1.52
91 92 7.104290 AGTTTCCAAAAATGTTCCCGTTTAAA 58.896 30.769 0.00 0.00 0.00 1.52
92 93 7.606839 AGTTTCCAAAAATGTTCCCGTTTAAAA 59.393 29.630 0.00 0.00 0.00 1.52
93 94 7.916914 TTCCAAAAATGTTCCCGTTTAAAAA 57.083 28.000 0.00 0.00 0.00 1.94
94 95 8.507524 TTCCAAAAATGTTCCCGTTTAAAAAT 57.492 26.923 0.00 0.00 0.00 1.82
95 96 7.920738 TCCAAAAATGTTCCCGTTTAAAAATG 58.079 30.769 0.00 0.00 0.00 2.32
96 97 7.553044 TCCAAAAATGTTCCCGTTTAAAAATGT 59.447 29.630 0.00 0.00 0.00 2.71
97 98 8.184848 CCAAAAATGTTCCCGTTTAAAAATGTT 58.815 29.630 0.00 0.00 0.00 2.71
98 99 9.216087 CAAAAATGTTCCCGTTTAAAAATGTTC 57.784 29.630 0.00 0.00 0.00 3.18
99 100 8.494016 AAAATGTTCCCGTTTAAAAATGTTCA 57.506 26.923 0.00 0.00 0.00 3.18
100 101 7.471657 AATGTTCCCGTTTAAAAATGTTCAC 57.528 32.000 0.00 0.00 0.00 3.18
101 102 5.962433 TGTTCCCGTTTAAAAATGTTCACA 58.038 33.333 0.00 0.00 0.00 3.58
102 103 6.395629 TGTTCCCGTTTAAAAATGTTCACAA 58.604 32.000 0.00 0.00 0.00 3.33
103 104 6.872020 TGTTCCCGTTTAAAAATGTTCACAAA 59.128 30.769 0.00 0.00 0.00 2.83
104 105 7.549488 TGTTCCCGTTTAAAAATGTTCACAAAT 59.451 29.630 0.00 0.00 0.00 2.32
105 106 8.391859 GTTCCCGTTTAAAAATGTTCACAAATT 58.608 29.630 0.00 0.00 0.00 1.82
106 107 8.494016 TCCCGTTTAAAAATGTTCACAAATTT 57.506 26.923 0.00 0.00 0.00 1.82
107 108 8.604890 TCCCGTTTAAAAATGTTCACAAATTTC 58.395 29.630 0.00 0.00 0.00 2.17
108 109 8.391106 CCCGTTTAAAAATGTTCACAAATTTCA 58.609 29.630 0.00 0.00 0.00 2.69
109 110 9.760660 CCGTTTAAAAATGTTCACAAATTTCAA 57.239 25.926 0.00 0.00 0.00 2.69
123 124 9.307121 TCACAAATTTCAAATAAATGTTCGTGT 57.693 25.926 0.00 0.00 0.00 4.49
124 125 9.913451 CACAAATTTCAAATAAATGTTCGTGTT 57.087 25.926 0.00 0.00 0.00 3.32
137 138 8.873242 AAATGTTCGTGTTTTCAAATTTGTTC 57.127 26.923 17.47 7.63 0.00 3.18
138 139 7.588143 ATGTTCGTGTTTTCAAATTTGTTCA 57.412 28.000 17.47 9.79 0.00 3.18
139 140 7.043454 TGTTCGTGTTTTCAAATTTGTTCAG 57.957 32.000 17.47 5.09 0.00 3.02
140 141 6.090088 TGTTCGTGTTTTCAAATTTGTTCAGG 59.910 34.615 17.47 15.48 0.00 3.86
141 142 5.955488 TCGTGTTTTCAAATTTGTTCAGGA 58.045 33.333 17.47 17.03 0.00 3.86
142 143 6.033341 TCGTGTTTTCAAATTTGTTCAGGAG 58.967 36.000 17.47 6.77 0.00 3.69
143 144 5.804979 CGTGTTTTCAAATTTGTTCAGGAGT 59.195 36.000 17.47 0.00 0.00 3.85
144 145 6.310224 CGTGTTTTCAAATTTGTTCAGGAGTT 59.690 34.615 17.47 0.00 0.00 3.01
145 146 7.148656 CGTGTTTTCAAATTTGTTCAGGAGTTT 60.149 33.333 17.47 0.00 0.00 2.66
146 147 9.145865 GTGTTTTCAAATTTGTTCAGGAGTTTA 57.854 29.630 17.47 0.00 0.00 2.01
147 148 9.712305 TGTTTTCAAATTTGTTCAGGAGTTTAA 57.288 25.926 17.47 0.00 0.00 1.52
157 158 8.925161 TTGTTCAGGAGTTTAAAGAATGTTTG 57.075 30.769 0.00 0.00 0.00 2.93
158 159 6.978080 TGTTCAGGAGTTTAAAGAATGTTTGC 59.022 34.615 0.00 0.00 0.00 3.68
159 160 6.707440 TCAGGAGTTTAAAGAATGTTTGCA 57.293 33.333 0.00 0.00 0.00 4.08
160 161 7.288810 TCAGGAGTTTAAAGAATGTTTGCAT 57.711 32.000 0.00 0.00 36.80 3.96
161 162 7.725251 TCAGGAGTTTAAAGAATGTTTGCATT 58.275 30.769 0.00 0.00 46.99 3.56
162 163 8.203485 TCAGGAGTTTAAAGAATGTTTGCATTT 58.797 29.630 0.00 0.00 44.61 2.32
163 164 8.277713 CAGGAGTTTAAAGAATGTTTGCATTTG 58.722 33.333 0.00 0.00 44.61 2.32
164 165 7.041848 AGGAGTTTAAAGAATGTTTGCATTTGC 60.042 33.333 0.00 0.00 44.61 3.68
165 166 6.958255 AGTTTAAAGAATGTTTGCATTTGCC 58.042 32.000 0.00 0.00 44.61 4.52
166 167 5.938438 TTAAAGAATGTTTGCATTTGCCC 57.062 34.783 0.00 0.00 44.61 5.36
167 168 3.488778 AAGAATGTTTGCATTTGCCCA 57.511 38.095 0.00 0.00 44.61 5.36
168 169 3.488778 AGAATGTTTGCATTTGCCCAA 57.511 38.095 0.00 0.00 44.61 4.12
169 170 4.023726 AGAATGTTTGCATTTGCCCAAT 57.976 36.364 0.00 0.00 44.61 3.16
170 171 4.400120 AGAATGTTTGCATTTGCCCAATT 58.600 34.783 0.00 0.00 44.61 2.32
171 172 4.828387 AGAATGTTTGCATTTGCCCAATTT 59.172 33.333 0.00 0.00 44.61 1.82
172 173 5.302313 AGAATGTTTGCATTTGCCCAATTTT 59.698 32.000 0.00 0.00 44.61 1.82
173 174 4.564940 TGTTTGCATTTGCCCAATTTTC 57.435 36.364 0.00 0.00 41.18 2.29
174 175 4.205587 TGTTTGCATTTGCCCAATTTTCT 58.794 34.783 0.00 0.00 41.18 2.52
175 176 4.643784 TGTTTGCATTTGCCCAATTTTCTT 59.356 33.333 0.00 0.00 41.18 2.52
176 177 5.126707 TGTTTGCATTTGCCCAATTTTCTTT 59.873 32.000 0.00 0.00 41.18 2.52
177 178 5.848833 TTGCATTTGCCCAATTTTCTTTT 57.151 30.435 0.00 0.00 41.18 2.27
178 179 5.184340 TGCATTTGCCCAATTTTCTTTTG 57.816 34.783 0.00 0.00 41.18 2.44
179 180 4.037684 TGCATTTGCCCAATTTTCTTTTGG 59.962 37.500 0.00 0.00 42.73 3.28
180 181 4.277921 GCATTTGCCCAATTTTCTTTTGGA 59.722 37.500 4.06 0.00 45.35 3.53
181 182 5.221204 GCATTTGCCCAATTTTCTTTTGGAA 60.221 36.000 4.06 0.00 45.35 3.53
182 183 6.517027 GCATTTGCCCAATTTTCTTTTGGAAT 60.517 34.615 4.06 0.00 45.35 3.01
183 184 7.435305 CATTTGCCCAATTTTCTTTTGGAATT 58.565 30.769 4.06 0.00 45.35 2.17
184 185 7.415592 TTTGCCCAATTTTCTTTTGGAATTT 57.584 28.000 4.06 0.00 45.35 1.82
185 186 6.631971 TGCCCAATTTTCTTTTGGAATTTC 57.368 33.333 4.06 0.00 45.35 2.17
186 187 6.125029 TGCCCAATTTTCTTTTGGAATTTCA 58.875 32.000 4.06 0.00 45.35 2.69
187 188 6.604795 TGCCCAATTTTCTTTTGGAATTTCAA 59.395 30.769 0.00 0.00 45.35 2.69
188 189 7.123247 TGCCCAATTTTCTTTTGGAATTTCAAA 59.877 29.630 7.87 7.87 45.35 2.69
189 190 7.978414 GCCCAATTTTCTTTTGGAATTTCAAAA 59.022 29.630 20.85 20.85 45.35 2.44
190 191 9.866798 CCCAATTTTCTTTTGGAATTTCAAAAA 57.133 25.926 22.04 10.45 45.35 1.94
198 199 9.460019 TCTTTTGGAATTTCAAAAATTGTTCCT 57.540 25.926 22.04 0.00 43.35 3.36
199 200 9.505995 CTTTTGGAATTTCAAAAATTGTTCCTG 57.494 29.630 22.04 6.82 43.35 3.86
200 201 8.572855 TTTGGAATTTCAAAAATTGTTCCTGT 57.427 26.923 9.56 0.00 36.83 4.00
201 202 8.572855 TTGGAATTTCAAAAATTGTTCCTGTT 57.427 26.923 0.00 0.00 36.83 3.16
202 203 8.572855 TGGAATTTCAAAAATTGTTCCTGTTT 57.427 26.923 2.56 0.00 36.83 2.83
203 204 9.018582 TGGAATTTCAAAAATTGTTCCTGTTTT 57.981 25.926 2.56 0.00 36.83 2.43
204 205 9.288124 GGAATTTCAAAAATTGTTCCTGTTTTG 57.712 29.630 2.56 0.00 40.62 2.44
205 206 9.288124 GAATTTCAAAAATTGTTCCTGTTTTGG 57.712 29.630 2.56 0.00 40.01 3.28
206 207 6.749923 TTCAAAAATTGTTCCTGTTTTGGG 57.250 33.333 7.61 0.00 40.01 4.12
207 208 6.054860 TCAAAAATTGTTCCTGTTTTGGGA 57.945 33.333 7.61 0.00 40.01 4.37
208 209 6.476378 TCAAAAATTGTTCCTGTTTTGGGAA 58.524 32.000 7.61 0.00 40.01 3.97
209 210 6.942576 TCAAAAATTGTTCCTGTTTTGGGAAA 59.057 30.769 7.61 0.00 43.39 3.13
210 211 7.448469 TCAAAAATTGTTCCTGTTTTGGGAAAA 59.552 29.630 7.61 0.00 43.39 2.29
211 212 7.767250 AAAATTGTTCCTGTTTTGGGAAAAA 57.233 28.000 0.00 0.00 43.39 1.94
212 213 7.953005 AAATTGTTCCTGTTTTGGGAAAAAT 57.047 28.000 5.38 5.38 46.74 1.82
214 215 6.749923 TTGTTCCTGTTTTGGGAAAAATTG 57.250 33.333 0.00 0.00 43.39 2.32
215 216 5.810095 TGTTCCTGTTTTGGGAAAAATTGT 58.190 33.333 0.00 0.00 43.39 2.71
216 217 6.241645 TGTTCCTGTTTTGGGAAAAATTGTT 58.758 32.000 0.00 0.00 43.39 2.83
217 218 6.717084 TGTTCCTGTTTTGGGAAAAATTGTTT 59.283 30.769 0.00 0.00 43.39 2.83
218 219 6.749923 TCCTGTTTTGGGAAAAATTGTTTG 57.250 33.333 0.00 0.00 31.13 2.93
219 220 6.241645 TCCTGTTTTGGGAAAAATTGTTTGT 58.758 32.000 0.00 0.00 31.13 2.83
220 221 6.150140 TCCTGTTTTGGGAAAAATTGTTTGTG 59.850 34.615 0.00 0.00 31.13 3.33
221 222 6.150140 CCTGTTTTGGGAAAAATTGTTTGTGA 59.850 34.615 0.00 0.00 31.13 3.58
222 223 7.148103 CCTGTTTTGGGAAAAATTGTTTGTGAT 60.148 33.333 0.00 0.00 31.13 3.06
223 224 8.115490 TGTTTTGGGAAAAATTGTTTGTGATT 57.885 26.923 0.00 0.00 31.13 2.57
224 225 8.579863 TGTTTTGGGAAAAATTGTTTGTGATTT 58.420 25.926 0.00 0.00 31.13 2.17
225 226 9.071221 GTTTTGGGAAAAATTGTTTGTGATTTC 57.929 29.630 0.00 0.00 31.13 2.17
226 227 6.595772 TGGGAAAAATTGTTTGTGATTTCG 57.404 33.333 0.00 0.00 0.00 3.46
227 228 6.341316 TGGGAAAAATTGTTTGTGATTTCGA 58.659 32.000 0.00 0.00 0.00 3.71
228 229 6.818644 TGGGAAAAATTGTTTGTGATTTCGAA 59.181 30.769 0.00 0.00 0.00 3.71
229 230 7.334421 TGGGAAAAATTGTTTGTGATTTCGAAA 59.666 29.630 13.91 13.91 0.00 3.46
230 231 8.178313 GGGAAAAATTGTTTGTGATTTCGAAAA 58.822 29.630 15.66 0.00 0.00 2.29
231 232 9.548208 GGAAAAATTGTTTGTGATTTCGAAAAA 57.452 25.926 15.66 3.50 0.00 1.94
236 237 9.701355 AATTGTTTGTGATTTCGAAAAATGTTC 57.299 25.926 15.66 8.04 35.21 3.18
237 238 7.227992 TGTTTGTGATTTCGAAAAATGTTCC 57.772 32.000 15.66 2.42 35.21 3.62
238 239 7.038659 TGTTTGTGATTTCGAAAAATGTTCCT 58.961 30.769 15.66 0.00 35.21 3.36
239 240 7.009999 TGTTTGTGATTTCGAAAAATGTTCCTG 59.990 33.333 15.66 0.00 35.21 3.86
240 241 4.981674 TGTGATTTCGAAAAATGTTCCTGC 59.018 37.500 15.66 2.11 35.21 4.85
241 242 5.221224 TGTGATTTCGAAAAATGTTCCTGCT 60.221 36.000 15.66 0.00 35.21 4.24
242 243 5.691754 GTGATTTCGAAAAATGTTCCTGCTT 59.308 36.000 15.66 0.00 35.21 3.91
243 244 6.200854 GTGATTTCGAAAAATGTTCCTGCTTT 59.799 34.615 15.66 0.00 35.21 3.51
244 245 6.760770 TGATTTCGAAAAATGTTCCTGCTTTT 59.239 30.769 15.66 0.00 35.21 2.27
245 246 6.582437 TTTCGAAAAATGTTCCTGCTTTTC 57.418 33.333 8.44 0.00 35.42 2.29
246 247 5.514274 TCGAAAAATGTTCCTGCTTTTCT 57.486 34.783 0.00 0.00 36.22 2.52
247 248 6.627395 TCGAAAAATGTTCCTGCTTTTCTA 57.373 33.333 0.00 0.00 36.22 2.10
248 249 7.033530 TCGAAAAATGTTCCTGCTTTTCTAA 57.966 32.000 0.00 0.00 36.22 2.10
249 250 7.484975 TCGAAAAATGTTCCTGCTTTTCTAAA 58.515 30.769 0.00 0.00 36.22 1.85
250 251 7.976734 TCGAAAAATGTTCCTGCTTTTCTAAAA 59.023 29.630 0.00 0.00 36.22 1.52
251 252 8.268738 CGAAAAATGTTCCTGCTTTTCTAAAAG 58.731 33.333 10.23 10.23 46.25 2.27
252 253 9.313118 GAAAAATGTTCCTGCTTTTCTAAAAGA 57.687 29.630 17.25 4.04 46.39 2.52
253 254 9.665719 AAAAATGTTCCTGCTTTTCTAAAAGAA 57.334 25.926 17.25 7.43 46.39 2.52
254 255 9.665719 AAAATGTTCCTGCTTTTCTAAAAGAAA 57.334 25.926 17.25 2.74 46.39 2.52
255 256 9.836864 AAATGTTCCTGCTTTTCTAAAAGAAAT 57.163 25.926 17.25 0.00 46.39 2.17
256 257 9.481340 AATGTTCCTGCTTTTCTAAAAGAAATC 57.519 29.630 17.25 2.30 46.39 2.17
257 258 8.006298 TGTTCCTGCTTTTCTAAAAGAAATCA 57.994 30.769 17.25 6.26 46.39 2.57
258 259 8.641541 TGTTCCTGCTTTTCTAAAAGAAATCAT 58.358 29.630 17.25 0.00 46.39 2.45
259 260 9.481340 GTTCCTGCTTTTCTAAAAGAAATCATT 57.519 29.630 17.25 0.00 46.39 2.57
284 285 8.525290 TTTTTAAGCAATTCCCCAATTTGAAA 57.475 26.923 0.00 0.00 28.97 2.69
285 286 8.525290 TTTTAAGCAATTCCCCAATTTGAAAA 57.475 26.923 0.00 0.00 28.97 2.29
286 287 7.742556 TTAAGCAATTCCCCAATTTGAAAAG 57.257 32.000 0.00 0.00 28.97 2.27
287 288 5.308976 AGCAATTCCCCAATTTGAAAAGT 57.691 34.783 0.00 0.00 28.97 2.66
288 289 5.065235 AGCAATTCCCCAATTTGAAAAGTG 58.935 37.500 0.00 0.00 34.07 3.16
289 290 4.821260 GCAATTCCCCAATTTGAAAAGTGT 59.179 37.500 0.00 0.00 32.52 3.55
290 291 5.299028 GCAATTCCCCAATTTGAAAAGTGTT 59.701 36.000 0.00 0.00 32.52 3.32
291 292 6.183360 GCAATTCCCCAATTTGAAAAGTGTTT 60.183 34.615 0.00 0.00 32.52 2.83
292 293 6.940831 ATTCCCCAATTTGAAAAGTGTTTG 57.059 33.333 0.00 0.00 32.52 2.93
293 294 4.195416 TCCCCAATTTGAAAAGTGTTTGC 58.805 39.130 0.00 0.00 32.52 3.68
294 295 3.944015 CCCCAATTTGAAAAGTGTTTGCA 59.056 39.130 0.00 0.00 32.52 4.08
295 296 4.579753 CCCCAATTTGAAAAGTGTTTGCAT 59.420 37.500 0.00 0.00 32.52 3.96
296 297 5.067544 CCCCAATTTGAAAAGTGTTTGCATT 59.932 36.000 0.00 0.00 32.52 3.56
297 298 6.200808 CCCAATTTGAAAAGTGTTTGCATTC 58.799 36.000 0.00 0.00 32.52 2.67
298 299 6.183360 CCCAATTTGAAAAGTGTTTGCATTCA 60.183 34.615 0.00 0.00 32.52 2.57
299 300 6.908284 CCAATTTGAAAAGTGTTTGCATTCAG 59.092 34.615 0.00 0.00 32.52 3.02
300 301 7.201626 CCAATTTGAAAAGTGTTTGCATTCAGA 60.202 33.333 0.00 0.00 32.52 3.27
301 302 7.846644 ATTTGAAAAGTGTTTGCATTCAGAA 57.153 28.000 0.00 0.00 32.21 3.02
302 303 7.664082 TTTGAAAAGTGTTTGCATTCAGAAA 57.336 28.000 0.00 0.00 32.21 2.52
303 304 7.664082 TTGAAAAGTGTTTGCATTCAGAAAA 57.336 28.000 0.00 0.00 32.21 2.29
304 305 7.059448 TGAAAAGTGTTTGCATTCAGAAAAC 57.941 32.000 0.00 0.00 44.68 2.43
308 309 4.734398 TGTTTGCATTCAGAAAACACCT 57.266 36.364 0.00 0.00 46.46 4.00
309 310 5.843673 TGTTTGCATTCAGAAAACACCTA 57.156 34.783 0.00 0.00 46.46 3.08
310 311 5.830912 TGTTTGCATTCAGAAAACACCTAG 58.169 37.500 0.00 0.00 46.46 3.02
311 312 5.359576 TGTTTGCATTCAGAAAACACCTAGT 59.640 36.000 0.00 0.00 46.46 2.57
312 313 6.127479 TGTTTGCATTCAGAAAACACCTAGTT 60.127 34.615 0.00 0.00 46.46 2.24
313 314 7.578571 TGTTTGCATTCAGAAAACACCTAGTTT 60.579 33.333 0.00 0.00 46.46 2.66
347 348 9.405587 TCTTTTAAAATGCTGAAAGTAATTCGG 57.594 29.630 0.09 0.00 45.64 4.30
348 349 9.405587 CTTTTAAAATGCTGAAAGTAATTCGGA 57.594 29.630 0.09 0.00 45.72 4.55
349 350 9.921637 TTTTAAAATGCTGAAAGTAATTCGGAT 57.078 25.926 0.00 0.00 45.72 4.18
350 351 9.567848 TTTAAAATGCTGAAAGTAATTCGGATC 57.432 29.630 1.33 0.00 45.72 3.36
351 352 7.396540 AAAATGCTGAAAGTAATTCGGATCT 57.603 32.000 1.33 0.00 45.72 2.75
352 353 5.998454 ATGCTGAAAGTAATTCGGATCTG 57.002 39.130 0.00 0.00 45.72 2.90
353 354 3.623060 TGCTGAAAGTAATTCGGATCTGC 59.377 43.478 0.00 1.16 45.72 4.26
354 355 3.873952 GCTGAAAGTAATTCGGATCTGCT 59.126 43.478 0.00 0.00 45.72 4.24
355 356 4.260538 GCTGAAAGTAATTCGGATCTGCTG 60.261 45.833 0.00 0.00 45.72 4.41
356 357 4.832248 TGAAAGTAATTCGGATCTGCTGT 58.168 39.130 0.00 0.00 41.18 4.40
357 358 4.631377 TGAAAGTAATTCGGATCTGCTGTG 59.369 41.667 0.00 0.00 41.18 3.66
358 359 3.895232 AGTAATTCGGATCTGCTGTGT 57.105 42.857 0.00 0.00 0.00 3.72
359 360 3.525537 AGTAATTCGGATCTGCTGTGTG 58.474 45.455 0.00 0.00 0.00 3.82
360 361 1.742761 AATTCGGATCTGCTGTGTGG 58.257 50.000 0.00 0.00 0.00 4.17
361 362 0.107508 ATTCGGATCTGCTGTGTGGG 60.108 55.000 0.00 0.00 0.00 4.61
362 363 2.124983 CGGATCTGCTGTGTGGGG 60.125 66.667 0.00 0.00 0.00 4.96
363 364 2.959484 CGGATCTGCTGTGTGGGGT 61.959 63.158 0.00 0.00 0.00 4.95
364 365 1.380302 GGATCTGCTGTGTGGGGTT 59.620 57.895 0.00 0.00 0.00 4.11
365 366 0.962356 GGATCTGCTGTGTGGGGTTG 60.962 60.000 0.00 0.00 0.00 3.77
366 367 0.036732 GATCTGCTGTGTGGGGTTGA 59.963 55.000 0.00 0.00 0.00 3.18
367 368 0.700564 ATCTGCTGTGTGGGGTTGAT 59.299 50.000 0.00 0.00 0.00 2.57
368 369 0.478072 TCTGCTGTGTGGGGTTGATT 59.522 50.000 0.00 0.00 0.00 2.57
369 370 0.883833 CTGCTGTGTGGGGTTGATTC 59.116 55.000 0.00 0.00 0.00 2.52
370 371 0.478072 TGCTGTGTGGGGTTGATTCT 59.522 50.000 0.00 0.00 0.00 2.40
371 372 1.133513 TGCTGTGTGGGGTTGATTCTT 60.134 47.619 0.00 0.00 0.00 2.52
372 373 2.107378 TGCTGTGTGGGGTTGATTCTTA 59.893 45.455 0.00 0.00 0.00 2.10
373 374 3.153919 GCTGTGTGGGGTTGATTCTTAA 58.846 45.455 0.00 0.00 0.00 1.85
374 375 3.572255 GCTGTGTGGGGTTGATTCTTAAA 59.428 43.478 0.00 0.00 0.00 1.52
375 376 4.038642 GCTGTGTGGGGTTGATTCTTAAAA 59.961 41.667 0.00 0.00 0.00 1.52
376 377 5.452636 GCTGTGTGGGGTTGATTCTTAAAAA 60.453 40.000 0.00 0.00 0.00 1.94
377 378 5.908341 TGTGTGGGGTTGATTCTTAAAAAC 58.092 37.500 0.00 0.00 0.00 2.43
378 379 4.979815 GTGTGGGGTTGATTCTTAAAAACG 59.020 41.667 0.00 0.00 0.00 3.60
379 380 4.038162 TGTGGGGTTGATTCTTAAAAACGG 59.962 41.667 0.00 0.00 0.00 4.44
380 381 4.278919 GTGGGGTTGATTCTTAAAAACGGA 59.721 41.667 0.00 0.00 0.00 4.69
381 382 4.278919 TGGGGTTGATTCTTAAAAACGGAC 59.721 41.667 0.00 0.00 0.00 4.79
382 383 4.469552 GGGTTGATTCTTAAAAACGGACG 58.530 43.478 0.00 0.00 0.00 4.79
383 384 3.910170 GGTTGATTCTTAAAAACGGACGC 59.090 43.478 0.00 0.00 0.00 5.19
384 385 4.319984 GGTTGATTCTTAAAAACGGACGCT 60.320 41.667 0.00 0.00 0.00 5.07
385 386 4.398549 TGATTCTTAAAAACGGACGCTG 57.601 40.909 0.00 0.00 0.00 5.18
386 387 2.673976 TTCTTAAAAACGGACGCTGC 57.326 45.000 0.00 0.00 0.00 5.25
387 388 1.584175 TCTTAAAAACGGACGCTGCA 58.416 45.000 0.00 0.00 0.00 4.41
388 389 1.941294 TCTTAAAAACGGACGCTGCAA 59.059 42.857 0.00 0.00 0.00 4.08
389 390 2.355132 TCTTAAAAACGGACGCTGCAAA 59.645 40.909 0.00 0.00 0.00 3.68
390 391 2.108178 TAAAAACGGACGCTGCAAAC 57.892 45.000 0.00 0.00 0.00 2.93
391 392 0.454196 AAAAACGGACGCTGCAAACT 59.546 45.000 0.00 0.00 0.00 2.66
392 393 0.454196 AAAACGGACGCTGCAAACTT 59.546 45.000 0.00 0.00 0.00 2.66
393 394 0.248458 AAACGGACGCTGCAAACTTG 60.248 50.000 0.00 0.00 0.00 3.16
394 395 1.373590 AACGGACGCTGCAAACTTGT 61.374 50.000 0.00 0.00 0.00 3.16
395 396 1.082756 CGGACGCTGCAAACTTGTC 60.083 57.895 0.00 0.00 0.00 3.18
396 397 1.082756 GGACGCTGCAAACTTGTCG 60.083 57.895 0.00 0.00 0.00 4.35
397 398 1.082756 GACGCTGCAAACTTGTCGG 60.083 57.895 0.00 0.00 0.00 4.79
398 399 1.772063 GACGCTGCAAACTTGTCGGT 61.772 55.000 0.00 0.00 0.00 4.69
399 400 0.531090 ACGCTGCAAACTTGTCGGTA 60.531 50.000 0.00 0.00 0.00 4.02
400 401 0.584396 CGCTGCAAACTTGTCGGTAA 59.416 50.000 0.00 0.00 0.00 2.85
401 402 1.659211 CGCTGCAAACTTGTCGGTAAC 60.659 52.381 0.00 0.00 0.00 2.50
415 416 1.836383 GGTAACGCGTGATAGGTCAG 58.164 55.000 14.98 0.00 34.36 3.51
416 417 1.133790 GGTAACGCGTGATAGGTCAGT 59.866 52.381 14.98 0.00 34.36 3.41
417 418 2.448219 GTAACGCGTGATAGGTCAGTC 58.552 52.381 14.98 0.00 34.36 3.51
418 419 0.179171 AACGCGTGATAGGTCAGTCG 60.179 55.000 14.98 0.00 36.75 4.18
419 420 1.298413 CGCGTGATAGGTCAGTCGG 60.298 63.158 0.00 0.00 34.36 4.79
420 421 1.807886 GCGTGATAGGTCAGTCGGT 59.192 57.895 0.00 0.00 34.36 4.69
421 422 0.525668 GCGTGATAGGTCAGTCGGTG 60.526 60.000 0.00 0.00 34.36 4.94
422 423 0.100682 CGTGATAGGTCAGTCGGTGG 59.899 60.000 0.00 0.00 34.36 4.61
423 424 0.179108 GTGATAGGTCAGTCGGTGGC 60.179 60.000 0.00 0.00 34.36 5.01
438 439 4.221422 GGCCGCGCCTGATCTGTA 62.221 66.667 0.00 0.00 46.69 2.74
439 440 2.029666 GCCGCGCCTGATCTGTAT 59.970 61.111 0.00 0.00 0.00 2.29
440 441 2.024319 GCCGCGCCTGATCTGTATC 61.024 63.158 0.00 0.00 0.00 2.24
441 442 1.363807 CCGCGCCTGATCTGTATCA 59.636 57.895 0.00 0.00 39.87 2.15
442 443 0.037882 CCGCGCCTGATCTGTATCAT 60.038 55.000 0.00 0.00 41.29 2.45
443 444 1.066136 CGCGCCTGATCTGTATCATG 58.934 55.000 0.00 0.00 41.29 3.07
444 445 1.336240 CGCGCCTGATCTGTATCATGA 60.336 52.381 0.00 0.00 41.29 3.07
445 446 2.673326 CGCGCCTGATCTGTATCATGAT 60.673 50.000 13.81 13.81 41.29 2.45
446 447 2.671888 GCGCCTGATCTGTATCATGATG 59.328 50.000 18.72 1.67 41.29 3.07
447 448 3.863780 GCGCCTGATCTGTATCATGATGT 60.864 47.826 18.72 0.00 41.29 3.06
448 449 4.619160 GCGCCTGATCTGTATCATGATGTA 60.619 45.833 18.72 6.04 41.29 2.29
449 450 4.861462 CGCCTGATCTGTATCATGATGTAC 59.139 45.833 18.72 9.90 41.29 2.90
450 451 4.861462 GCCTGATCTGTATCATGATGTACG 59.139 45.833 18.72 6.34 41.29 3.67
451 452 5.335976 GCCTGATCTGTATCATGATGTACGA 60.336 44.000 18.72 10.91 41.29 3.43
452 453 6.320944 CCTGATCTGTATCATGATGTACGAG 58.679 44.000 18.72 9.33 41.29 4.18
453 454 6.259550 TGATCTGTATCATGATGTACGAGG 57.740 41.667 18.72 4.53 37.20 4.63
454 455 5.770162 TGATCTGTATCATGATGTACGAGGT 59.230 40.000 18.72 6.10 37.20 3.85
455 456 6.265422 TGATCTGTATCATGATGTACGAGGTT 59.735 38.462 18.72 0.33 37.20 3.50
456 457 6.073327 TCTGTATCATGATGTACGAGGTTC 57.927 41.667 18.72 0.00 0.00 3.62
457 458 4.855531 TGTATCATGATGTACGAGGTTCG 58.144 43.478 18.72 0.00 46.93 3.95
458 459 2.863401 TCATGATGTACGAGGTTCGG 57.137 50.000 3.37 0.00 45.59 4.30
459 460 2.097036 TCATGATGTACGAGGTTCGGT 58.903 47.619 3.37 0.00 45.59 4.69
460 461 2.494471 TCATGATGTACGAGGTTCGGTT 59.506 45.455 3.37 0.00 45.59 4.44
461 462 2.642139 TGATGTACGAGGTTCGGTTC 57.358 50.000 3.37 0.00 45.59 3.62
462 463 1.203052 TGATGTACGAGGTTCGGTTCC 59.797 52.381 3.37 0.00 45.59 3.62
463 464 0.533951 ATGTACGAGGTTCGGTTCCC 59.466 55.000 3.37 0.00 45.59 3.97
464 465 0.827089 TGTACGAGGTTCGGTTCCCA 60.827 55.000 3.37 0.00 45.59 4.37
465 466 0.108945 GTACGAGGTTCGGTTCCCAG 60.109 60.000 3.37 0.00 45.59 4.45
466 467 1.880819 TACGAGGTTCGGTTCCCAGC 61.881 60.000 3.37 0.00 45.59 4.85
467 468 2.943978 CGAGGTTCGGTTCCCAGCT 61.944 63.158 0.00 0.00 36.00 4.24
468 469 1.601419 CGAGGTTCGGTTCCCAGCTA 61.601 60.000 0.00 0.00 36.00 3.32
469 470 0.108281 GAGGTTCGGTTCCCAGCTAC 60.108 60.000 0.00 0.00 0.00 3.58
470 471 1.447314 GGTTCGGTTCCCAGCTACG 60.447 63.158 0.00 0.00 0.00 3.51
471 472 1.291272 GTTCGGTTCCCAGCTACGT 59.709 57.895 0.00 0.00 0.00 3.57
472 473 0.735287 GTTCGGTTCCCAGCTACGTC 60.735 60.000 0.00 0.00 0.00 4.34
473 474 1.880819 TTCGGTTCCCAGCTACGTCC 61.881 60.000 0.00 0.00 0.00 4.79
474 475 2.642254 CGGTTCCCAGCTACGTCCA 61.642 63.158 0.00 0.00 0.00 4.02
475 476 1.218316 GGTTCCCAGCTACGTCCAG 59.782 63.158 0.00 0.00 0.00 3.86
476 477 1.255667 GGTTCCCAGCTACGTCCAGA 61.256 60.000 0.00 0.00 0.00 3.86
477 478 0.173708 GTTCCCAGCTACGTCCAGAG 59.826 60.000 0.00 0.00 0.00 3.35
478 479 0.039180 TTCCCAGCTACGTCCAGAGA 59.961 55.000 0.00 0.00 0.00 3.10
479 480 0.394488 TCCCAGCTACGTCCAGAGAG 60.394 60.000 0.00 0.00 0.00 3.20
480 481 1.435515 CCAGCTACGTCCAGAGAGC 59.564 63.158 0.00 0.00 34.23 4.09
481 482 1.063327 CAGCTACGTCCAGAGAGCG 59.937 63.158 0.00 0.00 37.40 5.03
482 483 2.115911 AGCTACGTCCAGAGAGCGG 61.116 63.158 0.00 0.00 37.40 5.52
483 484 2.409651 CTACGTCCAGAGAGCGGC 59.590 66.667 0.00 0.00 0.00 6.53
484 485 3.456431 CTACGTCCAGAGAGCGGCG 62.456 68.421 0.51 0.51 0.00 6.46
486 487 2.857575 TACGTCCAGAGAGCGGCGTA 62.858 60.000 9.37 0.00 37.43 4.42
487 488 2.835705 CGTCCAGAGAGCGGCGTAT 61.836 63.158 9.37 0.00 0.00 3.06
488 489 1.504647 CGTCCAGAGAGCGGCGTATA 61.505 60.000 9.37 0.00 0.00 1.47
489 490 0.238817 GTCCAGAGAGCGGCGTATAG 59.761 60.000 9.37 0.00 0.00 1.31
490 491 0.889638 TCCAGAGAGCGGCGTATAGG 60.890 60.000 9.37 3.80 0.00 2.57
491 492 0.889638 CCAGAGAGCGGCGTATAGGA 60.890 60.000 9.37 0.00 0.00 2.94
492 493 0.238817 CAGAGAGCGGCGTATAGGAC 59.761 60.000 9.37 0.00 0.00 3.85
511 512 0.650512 CGTCCCACGATTTGATTCGG 59.349 55.000 0.00 0.00 46.05 4.30
512 513 1.734163 GTCCCACGATTTGATTCGGT 58.266 50.000 0.00 0.00 43.33 4.69
514 515 1.014352 CCCACGATTTGATTCGGTCC 58.986 55.000 0.00 0.00 43.33 4.46
515 516 1.406887 CCCACGATTTGATTCGGTCCT 60.407 52.381 0.00 0.00 43.33 3.85
516 517 2.159014 CCCACGATTTGATTCGGTCCTA 60.159 50.000 0.00 0.00 43.33 2.94
559 560 1.486726 CTGGGCCCGATTTTAGAGAGT 59.513 52.381 19.37 0.00 0.00 3.24
603 604 0.178932 GGCCCAACCCTCTTTCCTTT 60.179 55.000 0.00 0.00 0.00 3.11
614 615 0.605589 CTTTCCTTTCGCTTCCCGGT 60.606 55.000 0.00 0.00 37.59 5.28
657 659 7.186268 TGCAAACCCTAATAAGAAACCCTAAT 58.814 34.615 0.00 0.00 0.00 1.73
702 704 4.939368 CACCCCGGCCACGAACAA 62.939 66.667 2.24 0.00 44.60 2.83
703 705 4.636435 ACCCCGGCCACGAACAAG 62.636 66.667 2.24 0.00 44.60 3.16
704 706 4.323477 CCCCGGCCACGAACAAGA 62.323 66.667 2.24 0.00 44.60 3.02
705 707 3.047877 CCCGGCCACGAACAAGAC 61.048 66.667 2.24 0.00 44.60 3.01
706 708 2.280524 CCGGCCACGAACAAGACA 60.281 61.111 2.24 0.00 44.60 3.41
707 709 1.890041 CCGGCCACGAACAAGACAA 60.890 57.895 2.24 0.00 44.60 3.18
708 710 1.278637 CGGCCACGAACAAGACAAC 59.721 57.895 2.24 0.00 44.60 3.32
709 711 1.652563 GGCCACGAACAAGACAACC 59.347 57.895 0.00 0.00 0.00 3.77
710 712 1.278637 GCCACGAACAAGACAACCG 59.721 57.895 0.00 0.00 0.00 4.44
711 713 1.938861 CCACGAACAAGACAACCGG 59.061 57.895 0.00 0.00 0.00 5.28
712 714 1.503818 CCACGAACAAGACAACCGGG 61.504 60.000 6.32 0.00 0.00 5.73
796 817 2.363925 AGGTCTCAGGGTACGGCC 60.364 66.667 0.00 0.00 0.00 6.13
841 862 3.735181 GAAGTATTCACCGTCGGCT 57.265 52.632 12.28 0.00 46.62 5.52
847 868 0.892755 ATTCACCGTCGGCTCTTACA 59.107 50.000 12.28 0.00 0.00 2.41
880 901 3.119101 TCGTTTCTATGAGGAAGGAGTGC 60.119 47.826 0.00 0.00 0.00 4.40
1067 1088 1.451927 GCCATCCCGAGTGCATGAA 60.452 57.895 0.00 0.00 0.00 2.57
1075 1096 1.673923 CCGAGTGCATGAAGAAGAGCA 60.674 52.381 0.00 0.00 34.10 4.26
1085 1106 0.972883 AAGAAGAGCAAGCTCGAGGT 59.027 50.000 12.24 12.24 46.90 3.85
1102 1123 0.034337 GGTGTCGCCTTACCTTCACA 59.966 55.000 0.00 0.00 34.11 3.58
1210 1243 0.898320 CACGGATCACCTCAGGAAGT 59.102 55.000 0.00 0.00 0.00 3.01
1219 1252 0.954452 CCTCAGGAAGTTGTGGCAAC 59.046 55.000 4.02 4.02 0.00 4.17
1230 1263 1.072505 GTGGCAACGGAAAGAGGGA 59.927 57.895 0.00 0.00 42.51 4.20
1280 1313 0.242017 GCTTTTCCTGCGCACAAGAT 59.758 50.000 5.66 0.00 0.00 2.40
1313 1346 1.004679 GGTCGCCGGTGTTTAAGGA 60.005 57.895 16.01 0.00 0.00 3.36
1351 1384 5.211201 CCTTGAGGGAAAATGATATGGGTT 58.789 41.667 0.00 0.00 37.23 4.11
1353 1386 5.205517 TGAGGGAAAATGATATGGGTTGT 57.794 39.130 0.00 0.00 0.00 3.32
1447 1480 5.142639 CCACCATGGATGATCTTTACCAAT 58.857 41.667 21.47 0.00 40.96 3.16
1583 1616 0.757935 ACCGTGGTGACTACACTGGT 60.758 55.000 0.00 0.00 45.32 4.00
1677 1710 6.966751 AGTGGATGATATAATAGCAAGCCAT 58.033 36.000 0.00 0.00 35.86 4.40
1729 1762 1.771854 TGGCTTTACTGGAACTGTGGA 59.228 47.619 0.00 0.00 41.61 4.02
1781 1814 3.258622 TCTTCATTTCACATTGGCATGCA 59.741 39.130 21.36 0.00 33.05 3.96
1788 1821 4.532314 TCACATTGGCATGCATGTTAAA 57.468 36.364 26.79 18.28 33.05 1.52
1859 1892 6.925718 TGAATATATCTGAAGCTTCGGTGAAG 59.074 38.462 29.82 17.60 42.03 3.02
1902 1936 5.574830 TGTTTTTCGTTTGTCAAGATGTTGG 59.425 36.000 2.33 0.00 34.09 3.77
2012 2052 4.404715 ACACACACAAAGGTCTAGTACAGT 59.595 41.667 0.00 0.00 0.00 3.55
2027 2067 7.002879 TCTAGTACAGTCAAGTAGTCAAAGGT 58.997 38.462 0.00 0.00 0.00 3.50
2071 2111 6.883744 TCAACAAGCCCTAAAGAAACAAAAT 58.116 32.000 0.00 0.00 0.00 1.82
2085 2126 0.385348 CAAAATAGCACGCACACGCA 60.385 50.000 0.00 0.00 45.53 5.24
2192 2241 0.762418 AGGTTGTTGATGACGTCCCA 59.238 50.000 14.12 8.40 0.00 4.37
2347 2396 4.829492 GGACCTTAATGCAAAGCCATCTAT 59.171 41.667 0.00 0.00 0.00 1.98
2502 2553 1.212935 GGTTAGCATCCTCCACCATGT 59.787 52.381 0.00 0.00 0.00 3.21
2539 2590 1.522900 CCATCCCCAGGTCCATTACT 58.477 55.000 0.00 0.00 0.00 2.24
2555 2606 4.469945 CCATTACTCTTAAGGACCTCCACA 59.530 45.833 1.85 0.00 38.89 4.17
2598 2649 1.918262 TCCATTGCCACAGGAAGATCT 59.082 47.619 0.00 0.00 0.00 2.75
2620 2671 4.785453 CTTCAGGGGCAGGCGGAC 62.785 72.222 0.00 0.00 0.00 4.79
2741 2792 4.612412 GCGTCCGGGGTGACAACA 62.612 66.667 0.00 0.00 34.88 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.739972 ACAAGTTCTGAGAAGTTGTGTATTTTT 58.260 29.630 34.95 16.46 40.95 1.94
2 3 8.281212 ACAAGTTCTGAGAAGTTGTGTATTTT 57.719 30.769 34.95 17.05 40.95 1.82
4 5 7.441458 GGTACAAGTTCTGAGAAGTTGTGTATT 59.559 37.037 38.82 24.19 42.06 1.89
5 6 6.929606 GGTACAAGTTCTGAGAAGTTGTGTAT 59.070 38.462 38.82 24.46 42.06 2.29
7 8 5.116882 GGTACAAGTTCTGAGAAGTTGTGT 58.883 41.667 38.82 26.11 42.06 3.72
8 9 4.209288 CGGTACAAGTTCTGAGAAGTTGTG 59.791 45.833 38.82 26.71 42.06 3.33
10 11 4.369182 ACGGTACAAGTTCTGAGAAGTTG 58.631 43.478 30.91 30.91 36.80 3.16
11 12 4.667519 ACGGTACAAGTTCTGAGAAGTT 57.332 40.909 9.39 9.39 0.00 2.66
12 13 5.979288 ATACGGTACAAGTTCTGAGAAGT 57.021 39.130 0.00 0.00 0.00 3.01
13 14 7.653767 AAAATACGGTACAAGTTCTGAGAAG 57.346 36.000 0.00 0.00 0.00 2.85
14 15 9.545105 TTTAAAATACGGTACAAGTTCTGAGAA 57.455 29.630 0.00 0.00 0.00 2.87
15 16 9.545105 TTTTAAAATACGGTACAAGTTCTGAGA 57.455 29.630 0.00 0.00 0.00 3.27
63 64 3.068873 CGGGAACATTTTTGGAAACTCCA 59.931 43.478 0.00 0.00 46.61 3.86
64 65 3.069016 ACGGGAACATTTTTGGAAACTCC 59.931 43.478 0.00 0.00 36.96 3.85
65 66 4.316205 ACGGGAACATTTTTGGAAACTC 57.684 40.909 0.00 0.00 0.00 3.01
66 67 4.746535 AACGGGAACATTTTTGGAAACT 57.253 36.364 0.00 0.00 0.00 2.66
67 68 6.905544 TTAAACGGGAACATTTTTGGAAAC 57.094 33.333 0.00 0.00 0.00 2.78
68 69 7.916914 TTTTAAACGGGAACATTTTTGGAAA 57.083 28.000 0.00 0.00 0.00 3.13
69 70 7.916914 TTTTTAAACGGGAACATTTTTGGAA 57.083 28.000 0.00 0.00 0.00 3.53
70 71 7.553044 ACATTTTTAAACGGGAACATTTTTGGA 59.447 29.630 0.00 0.00 0.00 3.53
71 72 7.698628 ACATTTTTAAACGGGAACATTTTTGG 58.301 30.769 0.00 0.00 0.00 3.28
72 73 9.216087 GAACATTTTTAAACGGGAACATTTTTG 57.784 29.630 0.00 0.00 0.00 2.44
73 74 8.947115 TGAACATTTTTAAACGGGAACATTTTT 58.053 25.926 0.00 0.00 0.00 1.94
74 75 8.391859 GTGAACATTTTTAAACGGGAACATTTT 58.608 29.630 0.00 0.00 0.00 1.82
75 76 7.549488 TGTGAACATTTTTAAACGGGAACATTT 59.451 29.630 0.00 0.00 0.00 2.32
76 77 7.042335 TGTGAACATTTTTAAACGGGAACATT 58.958 30.769 0.00 0.00 0.00 2.71
77 78 6.574350 TGTGAACATTTTTAAACGGGAACAT 58.426 32.000 0.00 0.00 0.00 2.71
78 79 5.962433 TGTGAACATTTTTAAACGGGAACA 58.038 33.333 0.00 0.00 0.00 3.18
79 80 6.889019 TTGTGAACATTTTTAAACGGGAAC 57.111 33.333 0.00 0.00 0.00 3.62
80 81 8.494016 AATTTGTGAACATTTTTAAACGGGAA 57.506 26.923 0.00 0.00 0.00 3.97
81 82 8.494016 AAATTTGTGAACATTTTTAAACGGGA 57.506 26.923 0.00 0.00 0.00 5.14
82 83 8.391106 TGAAATTTGTGAACATTTTTAAACGGG 58.609 29.630 0.00 0.00 0.00 5.28
83 84 9.760660 TTGAAATTTGTGAACATTTTTAAACGG 57.239 25.926 0.00 0.00 0.00 4.44
97 98 9.307121 ACACGAACATTTATTTGAAATTTGTGA 57.693 25.926 11.80 0.00 0.00 3.58
98 99 9.913451 AACACGAACATTTATTTGAAATTTGTG 57.087 25.926 0.00 1.02 0.00 3.33
111 112 9.959775 GAACAAATTTGAAAACACGAACATTTA 57.040 25.926 24.64 0.00 0.00 1.40
112 113 8.499162 TGAACAAATTTGAAAACACGAACATTT 58.501 25.926 24.64 3.08 0.00 2.32
113 114 8.023050 TGAACAAATTTGAAAACACGAACATT 57.977 26.923 24.64 3.52 0.00 2.71
114 115 7.201513 CCTGAACAAATTTGAAAACACGAACAT 60.202 33.333 24.64 0.00 0.00 2.71
115 116 6.090088 CCTGAACAAATTTGAAAACACGAACA 59.910 34.615 24.64 7.81 0.00 3.18
116 117 6.309251 TCCTGAACAAATTTGAAAACACGAAC 59.691 34.615 24.64 4.22 0.00 3.95
117 118 6.390721 TCCTGAACAAATTTGAAAACACGAA 58.609 32.000 24.64 0.00 0.00 3.85
118 119 5.955488 TCCTGAACAAATTTGAAAACACGA 58.045 33.333 24.64 13.02 0.00 4.35
119 120 5.804979 ACTCCTGAACAAATTTGAAAACACG 59.195 36.000 24.64 9.91 0.00 4.49
120 121 7.595311 AACTCCTGAACAAATTTGAAAACAC 57.405 32.000 24.64 8.98 0.00 3.32
121 122 9.712305 TTAAACTCCTGAACAAATTTGAAAACA 57.288 25.926 24.64 15.33 0.00 2.83
131 132 9.364989 CAAACATTCTTTAAACTCCTGAACAAA 57.635 29.630 0.00 0.00 0.00 2.83
132 133 7.491048 GCAAACATTCTTTAAACTCCTGAACAA 59.509 33.333 0.00 0.00 0.00 2.83
133 134 6.978080 GCAAACATTCTTTAAACTCCTGAACA 59.022 34.615 0.00 0.00 0.00 3.18
134 135 6.978080 TGCAAACATTCTTTAAACTCCTGAAC 59.022 34.615 0.00 0.00 0.00 3.18
135 136 7.106439 TGCAAACATTCTTTAAACTCCTGAA 57.894 32.000 0.00 0.00 0.00 3.02
136 137 6.707440 TGCAAACATTCTTTAAACTCCTGA 57.293 33.333 0.00 0.00 0.00 3.86
137 138 7.951530 AATGCAAACATTCTTTAAACTCCTG 57.048 32.000 0.00 0.00 43.08 3.86
138 139 7.041848 GCAAATGCAAACATTCTTTAAACTCCT 60.042 33.333 0.00 0.00 45.90 3.69
139 140 7.071414 GCAAATGCAAACATTCTTTAAACTCC 58.929 34.615 0.00 0.00 45.90 3.85
140 141 7.071414 GGCAAATGCAAACATTCTTTAAACTC 58.929 34.615 7.80 0.00 45.90 3.01
141 142 6.017192 GGGCAAATGCAAACATTCTTTAAACT 60.017 34.615 7.80 0.00 45.90 2.66
142 143 6.142139 GGGCAAATGCAAACATTCTTTAAAC 58.858 36.000 7.80 0.00 45.90 2.01
143 144 5.824624 TGGGCAAATGCAAACATTCTTTAAA 59.175 32.000 7.80 0.00 45.90 1.52
144 145 5.371526 TGGGCAAATGCAAACATTCTTTAA 58.628 33.333 7.80 0.00 45.90 1.52
145 146 4.965814 TGGGCAAATGCAAACATTCTTTA 58.034 34.783 7.80 0.00 45.90 1.85
146 147 3.818180 TGGGCAAATGCAAACATTCTTT 58.182 36.364 7.80 0.00 45.90 2.52
147 148 3.488778 TGGGCAAATGCAAACATTCTT 57.511 38.095 7.80 0.00 45.90 2.52
148 149 3.488778 TTGGGCAAATGCAAACATTCT 57.511 38.095 7.80 0.00 45.90 2.40
149 150 4.769859 AATTGGGCAAATGCAAACATTC 57.230 36.364 7.80 0.00 45.90 2.67
151 152 4.828387 AGAAAATTGGGCAAATGCAAACAT 59.172 33.333 7.80 0.00 44.36 2.71
152 153 4.205587 AGAAAATTGGGCAAATGCAAACA 58.794 34.783 7.80 0.40 44.36 2.83
153 154 4.834357 AGAAAATTGGGCAAATGCAAAC 57.166 36.364 7.80 0.00 44.36 2.93
154 155 5.848833 AAAGAAAATTGGGCAAATGCAAA 57.151 30.435 7.80 1.66 44.36 3.68
155 156 5.451520 CCAAAAGAAAATTGGGCAAATGCAA 60.452 36.000 7.80 0.00 42.95 4.08
156 157 4.037684 CCAAAAGAAAATTGGGCAAATGCA 59.962 37.500 7.80 0.00 42.95 3.96
157 158 4.277921 TCCAAAAGAAAATTGGGCAAATGC 59.722 37.500 5.54 0.00 45.97 3.56
158 159 6.388435 TTCCAAAAGAAAATTGGGCAAATG 57.612 33.333 5.54 0.00 45.97 2.32
159 160 7.600231 AATTCCAAAAGAAAATTGGGCAAAT 57.400 28.000 5.54 0.00 45.97 2.32
160 161 7.123247 TGAAATTCCAAAAGAAAATTGGGCAAA 59.877 29.630 5.54 0.00 45.97 3.68
161 162 6.604795 TGAAATTCCAAAAGAAAATTGGGCAA 59.395 30.769 5.54 0.00 45.97 4.52
162 163 6.125029 TGAAATTCCAAAAGAAAATTGGGCA 58.875 32.000 5.54 0.00 45.97 5.36
163 164 6.631971 TGAAATTCCAAAAGAAAATTGGGC 57.368 33.333 5.54 0.00 45.97 5.36
164 165 9.866798 TTTTTGAAATTCCAAAAGAAAATTGGG 57.133 25.926 2.72 0.00 45.97 4.12
172 173 9.460019 AGGAACAATTTTTGAAATTCCAAAAGA 57.540 25.926 2.72 0.00 43.99 2.52
173 174 9.505995 CAGGAACAATTTTTGAAATTCCAAAAG 57.494 29.630 2.72 0.00 43.99 2.27
174 175 9.018582 ACAGGAACAATTTTTGAAATTCCAAAA 57.981 25.926 7.31 7.31 42.30 2.44
175 176 8.572855 ACAGGAACAATTTTTGAAATTCCAAA 57.427 26.923 9.22 0.00 36.38 3.28
176 177 8.572855 AACAGGAACAATTTTTGAAATTCCAA 57.427 26.923 9.22 0.00 36.38 3.53
177 178 8.572855 AAACAGGAACAATTTTTGAAATTCCA 57.427 26.923 9.22 0.00 36.38 3.53
178 179 9.288124 CAAAACAGGAACAATTTTTGAAATTCC 57.712 29.630 0.18 0.18 40.04 3.01
179 180 9.288124 CCAAAACAGGAACAATTTTTGAAATTC 57.712 29.630 7.12 0.00 40.04 2.17
180 181 8.249638 CCCAAAACAGGAACAATTTTTGAAATT 58.750 29.630 7.12 0.00 40.04 1.82
181 182 7.613411 TCCCAAAACAGGAACAATTTTTGAAAT 59.387 29.630 7.12 0.00 40.04 2.17
182 183 6.942576 TCCCAAAACAGGAACAATTTTTGAAA 59.057 30.769 7.12 0.00 40.04 2.69
183 184 6.476378 TCCCAAAACAGGAACAATTTTTGAA 58.524 32.000 7.12 0.00 40.04 2.69
184 185 6.054860 TCCCAAAACAGGAACAATTTTTGA 57.945 33.333 7.12 0.00 40.04 2.69
185 186 6.749923 TTCCCAAAACAGGAACAATTTTTG 57.250 33.333 0.00 0.00 38.49 2.44
186 187 7.767250 TTTTCCCAAAACAGGAACAATTTTT 57.233 28.000 0.00 0.00 43.08 1.94
187 188 7.767250 TTTTTCCCAAAACAGGAACAATTTT 57.233 28.000 0.00 0.00 43.08 1.82
188 189 7.953005 ATTTTTCCCAAAACAGGAACAATTT 57.047 28.000 0.00 0.00 39.59 1.82
189 190 7.395772 ACAATTTTTCCCAAAACAGGAACAATT 59.604 29.630 9.69 9.69 46.91 2.32
190 191 6.889177 ACAATTTTTCCCAAAACAGGAACAAT 59.111 30.769 0.00 0.00 42.72 2.71
191 192 6.241645 ACAATTTTTCCCAAAACAGGAACAA 58.758 32.000 0.00 0.00 43.08 2.83
192 193 5.810095 ACAATTTTTCCCAAAACAGGAACA 58.190 33.333 0.00 0.00 43.08 3.18
193 194 6.751514 AACAATTTTTCCCAAAACAGGAAC 57.248 33.333 0.00 0.00 43.08 3.62
194 195 6.717084 ACAAACAATTTTTCCCAAAACAGGAA 59.283 30.769 0.00 0.00 41.69 3.36
195 196 6.150140 CACAAACAATTTTTCCCAAAACAGGA 59.850 34.615 0.00 0.00 34.63 3.86
196 197 6.150140 TCACAAACAATTTTTCCCAAAACAGG 59.850 34.615 0.00 0.00 34.63 4.00
197 198 7.138692 TCACAAACAATTTTTCCCAAAACAG 57.861 32.000 0.00 0.00 34.63 3.16
198 199 7.693969 ATCACAAACAATTTTTCCCAAAACA 57.306 28.000 0.00 0.00 34.63 2.83
199 200 8.978564 AAATCACAAACAATTTTTCCCAAAAC 57.021 26.923 0.00 0.00 34.63 2.43
200 201 7.965107 CGAAATCACAAACAATTTTTCCCAAAA 59.035 29.630 0.00 0.00 36.30 2.44
201 202 7.334421 TCGAAATCACAAACAATTTTTCCCAAA 59.666 29.630 0.00 0.00 0.00 3.28
202 203 6.818644 TCGAAATCACAAACAATTTTTCCCAA 59.181 30.769 0.00 0.00 0.00 4.12
203 204 6.341316 TCGAAATCACAAACAATTTTTCCCA 58.659 32.000 0.00 0.00 0.00 4.37
204 205 6.836577 TCGAAATCACAAACAATTTTTCCC 57.163 33.333 0.00 0.00 0.00 3.97
205 206 9.548208 TTTTTCGAAATCACAAACAATTTTTCC 57.452 25.926 12.12 0.00 0.00 3.13
210 211 9.701355 GAACATTTTTCGAAATCACAAACAATT 57.299 25.926 12.12 0.00 0.00 2.32
211 212 8.334632 GGAACATTTTTCGAAATCACAAACAAT 58.665 29.630 12.12 2.99 0.00 2.71
212 213 7.547370 AGGAACATTTTTCGAAATCACAAACAA 59.453 29.630 12.12 0.46 0.00 2.83
213 214 7.009999 CAGGAACATTTTTCGAAATCACAAACA 59.990 33.333 12.12 0.00 0.00 2.83
214 215 7.336975 CAGGAACATTTTTCGAAATCACAAAC 58.663 34.615 12.12 1.31 0.00 2.93
215 216 6.019156 GCAGGAACATTTTTCGAAATCACAAA 60.019 34.615 12.12 2.78 0.00 2.83
216 217 5.461737 GCAGGAACATTTTTCGAAATCACAA 59.538 36.000 12.12 3.18 0.00 3.33
217 218 4.981674 GCAGGAACATTTTTCGAAATCACA 59.018 37.500 12.12 0.00 0.00 3.58
218 219 5.222631 AGCAGGAACATTTTTCGAAATCAC 58.777 37.500 12.12 0.94 0.00 3.06
219 220 5.452078 AGCAGGAACATTTTTCGAAATCA 57.548 34.783 12.12 1.90 0.00 2.57
220 221 6.769608 AAAGCAGGAACATTTTTCGAAATC 57.230 33.333 12.12 5.66 0.00 2.17
221 222 6.986231 AGAAAAGCAGGAACATTTTTCGAAAT 59.014 30.769 12.12 0.00 41.81 2.17
222 223 6.337356 AGAAAAGCAGGAACATTTTTCGAAA 58.663 32.000 6.47 6.47 41.81 3.46
223 224 5.901552 AGAAAAGCAGGAACATTTTTCGAA 58.098 33.333 0.00 0.00 41.81 3.71
224 225 5.514274 AGAAAAGCAGGAACATTTTTCGA 57.486 34.783 0.00 0.00 41.81 3.71
225 226 7.692908 TTTAGAAAAGCAGGAACATTTTTCG 57.307 32.000 0.00 0.00 41.81 3.46
226 227 9.313118 TCTTTTAGAAAAGCAGGAACATTTTTC 57.687 29.630 9.45 1.44 43.85 2.29
227 228 9.665719 TTCTTTTAGAAAAGCAGGAACATTTTT 57.334 25.926 9.45 0.00 43.85 1.94
228 229 9.665719 TTTCTTTTAGAAAAGCAGGAACATTTT 57.334 25.926 9.45 0.00 40.89 1.82
229 230 9.836864 ATTTCTTTTAGAAAAGCAGGAACATTT 57.163 25.926 9.45 0.00 46.08 2.32
230 231 9.481340 GATTTCTTTTAGAAAAGCAGGAACATT 57.519 29.630 9.45 0.00 46.08 2.71
231 232 8.641541 TGATTTCTTTTAGAAAAGCAGGAACAT 58.358 29.630 9.45 0.00 46.08 2.71
232 233 8.006298 TGATTTCTTTTAGAAAAGCAGGAACA 57.994 30.769 9.45 3.64 46.08 3.18
233 234 9.481340 AATGATTTCTTTTAGAAAAGCAGGAAC 57.519 29.630 9.45 1.61 46.08 3.62
259 260 8.525290 TTTCAAATTGGGGAATTGCTTAAAAA 57.475 26.923 0.00 0.00 0.00 1.94
260 261 8.525290 TTTTCAAATTGGGGAATTGCTTAAAA 57.475 26.923 0.00 0.00 0.00 1.52
261 262 7.777440 ACTTTTCAAATTGGGGAATTGCTTAAA 59.223 29.630 0.00 0.00 0.00 1.52
262 263 7.228308 CACTTTTCAAATTGGGGAATTGCTTAA 59.772 33.333 0.00 0.00 0.00 1.85
263 264 6.709846 CACTTTTCAAATTGGGGAATTGCTTA 59.290 34.615 0.00 0.00 0.00 3.09
264 265 5.532032 CACTTTTCAAATTGGGGAATTGCTT 59.468 36.000 0.00 0.00 0.00 3.91
265 266 5.065235 CACTTTTCAAATTGGGGAATTGCT 58.935 37.500 0.00 0.00 0.00 3.91
266 267 4.821260 ACACTTTTCAAATTGGGGAATTGC 59.179 37.500 0.00 0.00 0.00 3.56
267 268 6.940831 AACACTTTTCAAATTGGGGAATTG 57.059 33.333 0.00 0.00 0.00 2.32
268 269 6.183360 GCAAACACTTTTCAAATTGGGGAATT 60.183 34.615 0.00 0.00 0.00 2.17
269 270 5.299028 GCAAACACTTTTCAAATTGGGGAAT 59.701 36.000 0.00 0.00 0.00 3.01
270 271 4.637977 GCAAACACTTTTCAAATTGGGGAA 59.362 37.500 0.00 0.00 0.00 3.97
271 272 4.195416 GCAAACACTTTTCAAATTGGGGA 58.805 39.130 0.00 0.00 0.00 4.81
272 273 3.944015 TGCAAACACTTTTCAAATTGGGG 59.056 39.130 0.00 0.00 0.00 4.96
273 274 5.754543 ATGCAAACACTTTTCAAATTGGG 57.245 34.783 0.00 0.00 0.00 4.12
274 275 6.783162 TGAATGCAAACACTTTTCAAATTGG 58.217 32.000 0.00 0.00 0.00 3.16
275 276 7.686519 TCTGAATGCAAACACTTTTCAAATTG 58.313 30.769 0.00 0.00 0.00 2.32
276 277 7.846644 TCTGAATGCAAACACTTTTCAAATT 57.153 28.000 0.00 0.00 0.00 1.82
277 278 7.846644 TTCTGAATGCAAACACTTTTCAAAT 57.153 28.000 0.00 0.00 0.00 2.32
278 279 7.664082 TTTCTGAATGCAAACACTTTTCAAA 57.336 28.000 0.00 0.00 0.00 2.69
279 280 7.172190 TGTTTTCTGAATGCAAACACTTTTCAA 59.828 29.630 0.00 0.00 37.00 2.69
280 281 6.648310 TGTTTTCTGAATGCAAACACTTTTCA 59.352 30.769 0.00 0.00 37.00 2.69
281 282 7.059448 TGTTTTCTGAATGCAAACACTTTTC 57.941 32.000 0.00 0.00 37.00 2.29
287 288 4.734398 AGGTGTTTTCTGAATGCAAACA 57.266 36.364 0.00 2.19 38.93 2.83
288 289 5.831997 ACTAGGTGTTTTCTGAATGCAAAC 58.168 37.500 0.00 0.00 33.47 2.93
289 290 6.463995 AACTAGGTGTTTTCTGAATGCAAA 57.536 33.333 0.00 0.00 34.84 3.68
290 291 6.463995 AAACTAGGTGTTTTCTGAATGCAA 57.536 33.333 0.00 0.00 45.69 4.08
291 292 7.575414 TTAAACTAGGTGTTTTCTGAATGCA 57.425 32.000 0.00 0.00 45.69 3.96
292 293 8.865590 TTTTAAACTAGGTGTTTTCTGAATGC 57.134 30.769 0.00 0.00 45.69 3.56
321 322 9.405587 CCGAATTACTTTCAGCATTTTAAAAGA 57.594 29.630 6.79 0.00 33.66 2.52
322 323 9.405587 TCCGAATTACTTTCAGCATTTTAAAAG 57.594 29.630 6.79 0.60 33.66 2.27
323 324 9.921637 ATCCGAATTACTTTCAGCATTTTAAAA 57.078 25.926 2.51 2.51 33.66 1.52
324 325 9.567848 GATCCGAATTACTTTCAGCATTTTAAA 57.432 29.630 0.00 0.00 33.66 1.52
325 326 8.956426 AGATCCGAATTACTTTCAGCATTTTAA 58.044 29.630 0.00 0.00 33.66 1.52
326 327 8.397906 CAGATCCGAATTACTTTCAGCATTTTA 58.602 33.333 0.00 0.00 33.66 1.52
327 328 7.253422 CAGATCCGAATTACTTTCAGCATTTT 58.747 34.615 0.00 0.00 33.66 1.82
328 329 6.678900 GCAGATCCGAATTACTTTCAGCATTT 60.679 38.462 0.00 0.00 33.66 2.32
329 330 5.220931 GCAGATCCGAATTACTTTCAGCATT 60.221 40.000 0.00 0.00 33.66 3.56
330 331 4.274459 GCAGATCCGAATTACTTTCAGCAT 59.726 41.667 0.00 0.00 33.66 3.79
331 332 3.623060 GCAGATCCGAATTACTTTCAGCA 59.377 43.478 0.00 0.00 33.66 4.41
332 333 3.873952 AGCAGATCCGAATTACTTTCAGC 59.126 43.478 0.00 0.00 33.66 4.26
333 334 4.872691 ACAGCAGATCCGAATTACTTTCAG 59.127 41.667 0.00 0.00 33.66 3.02
334 335 4.631377 CACAGCAGATCCGAATTACTTTCA 59.369 41.667 0.00 0.00 33.66 2.69
335 336 4.631813 ACACAGCAGATCCGAATTACTTTC 59.368 41.667 0.00 0.00 0.00 2.62
336 337 4.393062 CACACAGCAGATCCGAATTACTTT 59.607 41.667 0.00 0.00 0.00 2.66
337 338 3.935203 CACACAGCAGATCCGAATTACTT 59.065 43.478 0.00 0.00 0.00 2.24
338 339 3.525537 CACACAGCAGATCCGAATTACT 58.474 45.455 0.00 0.00 0.00 2.24
339 340 2.609459 CCACACAGCAGATCCGAATTAC 59.391 50.000 0.00 0.00 0.00 1.89
340 341 2.419990 CCCACACAGCAGATCCGAATTA 60.420 50.000 0.00 0.00 0.00 1.40
341 342 1.679944 CCCACACAGCAGATCCGAATT 60.680 52.381 0.00 0.00 0.00 2.17
342 343 0.107508 CCCACACAGCAGATCCGAAT 60.108 55.000 0.00 0.00 0.00 3.34
343 344 1.296392 CCCACACAGCAGATCCGAA 59.704 57.895 0.00 0.00 0.00 4.30
344 345 2.659063 CCCCACACAGCAGATCCGA 61.659 63.158 0.00 0.00 0.00 4.55
345 346 2.124983 CCCCACACAGCAGATCCG 60.125 66.667 0.00 0.00 0.00 4.18
346 347 0.962356 CAACCCCACACAGCAGATCC 60.962 60.000 0.00 0.00 0.00 3.36
347 348 0.036732 TCAACCCCACACAGCAGATC 59.963 55.000 0.00 0.00 0.00 2.75
348 349 0.700564 ATCAACCCCACACAGCAGAT 59.299 50.000 0.00 0.00 0.00 2.90
349 350 0.478072 AATCAACCCCACACAGCAGA 59.522 50.000 0.00 0.00 0.00 4.26
350 351 0.883833 GAATCAACCCCACACAGCAG 59.116 55.000 0.00 0.00 0.00 4.24
351 352 0.478072 AGAATCAACCCCACACAGCA 59.522 50.000 0.00 0.00 0.00 4.41
352 353 1.620822 AAGAATCAACCCCACACAGC 58.379 50.000 0.00 0.00 0.00 4.40
353 354 5.782893 TTTTAAGAATCAACCCCACACAG 57.217 39.130 0.00 0.00 0.00 3.66
354 355 5.450688 CGTTTTTAAGAATCAACCCCACACA 60.451 40.000 0.00 0.00 0.00 3.72
355 356 4.979815 CGTTTTTAAGAATCAACCCCACAC 59.020 41.667 0.00 0.00 0.00 3.82
356 357 4.038162 CCGTTTTTAAGAATCAACCCCACA 59.962 41.667 0.00 0.00 0.00 4.17
357 358 4.278919 TCCGTTTTTAAGAATCAACCCCAC 59.721 41.667 0.00 0.00 0.00 4.61
358 359 4.278919 GTCCGTTTTTAAGAATCAACCCCA 59.721 41.667 0.00 0.00 0.00 4.96
359 360 4.614306 CGTCCGTTTTTAAGAATCAACCCC 60.614 45.833 0.00 0.00 0.00 4.95
360 361 4.469552 CGTCCGTTTTTAAGAATCAACCC 58.530 43.478 0.00 0.00 0.00 4.11
361 362 3.910170 GCGTCCGTTTTTAAGAATCAACC 59.090 43.478 0.00 0.00 0.00 3.77
362 363 4.611366 CAGCGTCCGTTTTTAAGAATCAAC 59.389 41.667 0.00 0.00 0.00 3.18
363 364 4.778904 CAGCGTCCGTTTTTAAGAATCAA 58.221 39.130 0.00 0.00 0.00 2.57
364 365 3.364565 GCAGCGTCCGTTTTTAAGAATCA 60.365 43.478 0.00 0.00 0.00 2.57
365 366 3.161306 GCAGCGTCCGTTTTTAAGAATC 58.839 45.455 0.00 0.00 0.00 2.52
366 367 2.550606 TGCAGCGTCCGTTTTTAAGAAT 59.449 40.909 0.00 0.00 0.00 2.40
367 368 1.941294 TGCAGCGTCCGTTTTTAAGAA 59.059 42.857 0.00 0.00 0.00 2.52
368 369 1.584175 TGCAGCGTCCGTTTTTAAGA 58.416 45.000 0.00 0.00 0.00 2.10
369 370 2.392933 TTGCAGCGTCCGTTTTTAAG 57.607 45.000 0.00 0.00 0.00 1.85
370 371 2.097791 AGTTTGCAGCGTCCGTTTTTAA 59.902 40.909 0.00 0.00 0.00 1.52
371 372 1.671845 AGTTTGCAGCGTCCGTTTTTA 59.328 42.857 0.00 0.00 0.00 1.52
372 373 0.454196 AGTTTGCAGCGTCCGTTTTT 59.546 45.000 0.00 0.00 0.00 1.94
373 374 0.454196 AAGTTTGCAGCGTCCGTTTT 59.546 45.000 0.00 0.00 0.00 2.43
374 375 0.248458 CAAGTTTGCAGCGTCCGTTT 60.248 50.000 0.00 0.00 0.00 3.60
375 376 1.355210 CAAGTTTGCAGCGTCCGTT 59.645 52.632 0.00 0.00 0.00 4.44
376 377 1.772063 GACAAGTTTGCAGCGTCCGT 61.772 55.000 0.00 0.00 0.00 4.69
377 378 1.082756 GACAAGTTTGCAGCGTCCG 60.083 57.895 0.00 0.00 0.00 4.79
378 379 1.082756 CGACAAGTTTGCAGCGTCC 60.083 57.895 0.00 0.00 0.00 4.79
379 380 1.082756 CCGACAAGTTTGCAGCGTC 60.083 57.895 0.00 0.00 0.00 5.19
380 381 0.531090 TACCGACAAGTTTGCAGCGT 60.531 50.000 0.00 0.00 0.00 5.07
381 382 0.584396 TTACCGACAAGTTTGCAGCG 59.416 50.000 0.00 0.00 0.00 5.18
382 383 1.659211 CGTTACCGACAAGTTTGCAGC 60.659 52.381 0.00 0.00 35.63 5.25
383 384 1.659211 GCGTTACCGACAAGTTTGCAG 60.659 52.381 0.00 0.00 35.63 4.41
384 385 0.305313 GCGTTACCGACAAGTTTGCA 59.695 50.000 0.00 0.00 35.63 4.08
385 386 0.720173 CGCGTTACCGACAAGTTTGC 60.720 55.000 0.00 0.00 35.63 3.68
386 387 0.578211 ACGCGTTACCGACAAGTTTG 59.422 50.000 5.58 0.00 35.63 2.93
387 388 0.578211 CACGCGTTACCGACAAGTTT 59.422 50.000 10.22 0.00 35.63 2.66
388 389 0.248990 TCACGCGTTACCGACAAGTT 60.249 50.000 10.22 0.00 35.63 2.66
389 390 0.038892 ATCACGCGTTACCGACAAGT 60.039 50.000 10.22 0.00 35.63 3.16
390 391 1.844357 CTATCACGCGTTACCGACAAG 59.156 52.381 10.22 1.51 35.63 3.16
391 392 1.467883 CCTATCACGCGTTACCGACAA 60.468 52.381 10.22 0.00 35.63 3.18
392 393 0.099259 CCTATCACGCGTTACCGACA 59.901 55.000 10.22 0.00 35.63 4.35
393 394 0.099436 ACCTATCACGCGTTACCGAC 59.901 55.000 10.22 0.00 35.63 4.79
394 395 0.378257 GACCTATCACGCGTTACCGA 59.622 55.000 10.22 3.68 35.63 4.69
395 396 0.099259 TGACCTATCACGCGTTACCG 59.901 55.000 10.22 0.00 37.07 4.02
396 397 1.133790 ACTGACCTATCACGCGTTACC 59.866 52.381 10.22 0.00 0.00 2.85
397 398 2.448219 GACTGACCTATCACGCGTTAC 58.552 52.381 10.22 0.00 0.00 2.50
398 399 1.063027 CGACTGACCTATCACGCGTTA 59.937 52.381 10.22 0.38 0.00 3.18
399 400 0.179171 CGACTGACCTATCACGCGTT 60.179 55.000 10.22 0.00 0.00 4.84
400 401 1.428219 CGACTGACCTATCACGCGT 59.572 57.895 5.58 5.58 0.00 6.01
401 402 1.298413 CCGACTGACCTATCACGCG 60.298 63.158 3.53 3.53 0.00 6.01
402 403 0.525668 CACCGACTGACCTATCACGC 60.526 60.000 0.00 0.00 0.00 5.34
403 404 0.100682 CCACCGACTGACCTATCACG 59.899 60.000 0.00 0.00 0.00 4.35
404 405 0.179108 GCCACCGACTGACCTATCAC 60.179 60.000 0.00 0.00 0.00 3.06
405 406 1.327690 GGCCACCGACTGACCTATCA 61.328 60.000 0.00 0.00 0.00 2.15
406 407 1.442148 GGCCACCGACTGACCTATC 59.558 63.158 0.00 0.00 0.00 2.08
407 408 3.630289 GGCCACCGACTGACCTAT 58.370 61.111 0.00 0.00 0.00 2.57
422 423 2.024319 GATACAGATCAGGCGCGGC 61.024 63.158 27.06 27.06 31.78 6.53
423 424 0.037882 ATGATACAGATCAGGCGCGG 60.038 55.000 8.83 0.00 45.29 6.46
424 425 1.066136 CATGATACAGATCAGGCGCG 58.934 55.000 0.00 0.00 45.29 6.86
425 426 2.445565 TCATGATACAGATCAGGCGC 57.554 50.000 0.00 0.00 45.29 6.53
426 427 3.922910 ACATCATGATACAGATCAGGCG 58.077 45.455 8.15 0.00 45.29 5.52
427 428 4.861462 CGTACATCATGATACAGATCAGGC 59.139 45.833 8.15 0.00 45.29 4.85
428 429 6.259550 TCGTACATCATGATACAGATCAGG 57.740 41.667 8.15 0.00 45.29 3.86
429 430 6.072230 ACCTCGTACATCATGATACAGATCAG 60.072 42.308 8.15 0.00 45.29 2.90
430 431 5.770162 ACCTCGTACATCATGATACAGATCA 59.230 40.000 8.15 0.00 46.13 2.92
431 432 6.260870 ACCTCGTACATCATGATACAGATC 57.739 41.667 8.15 0.00 0.00 2.75
432 433 6.568653 CGAACCTCGTACATCATGATACAGAT 60.569 42.308 8.15 0.00 34.72 2.90
433 434 5.277828 CGAACCTCGTACATCATGATACAGA 60.278 44.000 8.15 5.19 34.72 3.41
434 435 4.912187 CGAACCTCGTACATCATGATACAG 59.088 45.833 8.15 0.00 34.72 2.74
435 436 4.261447 CCGAACCTCGTACATCATGATACA 60.261 45.833 8.15 0.00 38.40 2.29
436 437 4.227538 CCGAACCTCGTACATCATGATAC 58.772 47.826 8.15 3.09 38.40 2.24
437 438 3.887110 ACCGAACCTCGTACATCATGATA 59.113 43.478 8.15 0.00 38.40 2.15
438 439 2.693591 ACCGAACCTCGTACATCATGAT 59.306 45.455 1.18 1.18 38.40 2.45
439 440 2.097036 ACCGAACCTCGTACATCATGA 58.903 47.619 0.00 0.00 38.40 3.07
440 441 2.579207 ACCGAACCTCGTACATCATG 57.421 50.000 0.00 0.00 38.40 3.07
441 442 2.159142 GGAACCGAACCTCGTACATCAT 60.159 50.000 0.00 0.00 38.40 2.45
442 443 1.203052 GGAACCGAACCTCGTACATCA 59.797 52.381 0.00 0.00 38.40 3.07
443 444 1.470458 GGGAACCGAACCTCGTACATC 60.470 57.143 0.00 0.00 40.86 3.06
444 445 0.533951 GGGAACCGAACCTCGTACAT 59.466 55.000 0.00 0.00 40.86 2.29
445 446 1.966762 GGGAACCGAACCTCGTACA 59.033 57.895 0.00 0.00 40.86 2.90
446 447 4.898002 GGGAACCGAACCTCGTAC 57.102 61.111 0.00 0.00 40.86 3.67
458 459 0.173708 CTCTGGACGTAGCTGGGAAC 59.826 60.000 0.00 0.00 0.00 3.62
459 460 0.039180 TCTCTGGACGTAGCTGGGAA 59.961 55.000 0.00 0.00 0.00 3.97
460 461 0.394488 CTCTCTGGACGTAGCTGGGA 60.394 60.000 0.00 0.00 0.00 4.37
461 462 2.010582 GCTCTCTGGACGTAGCTGGG 62.011 65.000 0.00 0.00 32.18 4.45
462 463 1.435515 GCTCTCTGGACGTAGCTGG 59.564 63.158 0.00 0.00 32.18 4.85
463 464 1.063327 CGCTCTCTGGACGTAGCTG 59.937 63.158 0.00 0.00 32.73 4.24
464 465 2.115911 CCGCTCTCTGGACGTAGCT 61.116 63.158 4.40 0.00 32.73 3.32
465 466 2.409651 CCGCTCTCTGGACGTAGC 59.590 66.667 0.00 0.00 0.00 3.58
466 467 2.409651 GCCGCTCTCTGGACGTAG 59.590 66.667 0.00 0.00 0.00 3.51
467 468 2.857575 TACGCCGCTCTCTGGACGTA 62.858 60.000 0.00 0.00 39.06 3.57
469 470 1.504647 TATACGCCGCTCTCTGGACG 61.505 60.000 0.00 0.00 33.96 4.79
470 471 0.238817 CTATACGCCGCTCTCTGGAC 59.761 60.000 0.00 0.00 0.00 4.02
471 472 0.889638 CCTATACGCCGCTCTCTGGA 60.890 60.000 0.00 0.00 0.00 3.86
472 473 0.889638 TCCTATACGCCGCTCTCTGG 60.890 60.000 0.00 0.00 0.00 3.86
473 474 0.238817 GTCCTATACGCCGCTCTCTG 59.761 60.000 0.00 0.00 0.00 3.35
474 475 1.229315 CGTCCTATACGCCGCTCTCT 61.229 60.000 0.00 0.00 46.10 3.10
475 476 1.207085 CGTCCTATACGCCGCTCTC 59.793 63.158 0.00 0.00 46.10 3.20
476 477 3.341848 CGTCCTATACGCCGCTCT 58.658 61.111 0.00 0.00 46.10 4.09
484 485 3.067180 TCAAATCGTGGGACGTCCTATAC 59.933 47.826 32.52 25.23 43.14 1.47
485 486 3.289836 TCAAATCGTGGGACGTCCTATA 58.710 45.455 32.52 19.75 43.14 1.31
486 487 2.104967 TCAAATCGTGGGACGTCCTAT 58.895 47.619 32.52 18.15 43.14 2.57
487 488 1.548081 TCAAATCGTGGGACGTCCTA 58.452 50.000 32.52 25.88 43.14 2.94
488 489 0.902531 ATCAAATCGTGGGACGTCCT 59.097 50.000 32.52 11.20 43.14 3.85
489 490 1.664151 GAATCAAATCGTGGGACGTCC 59.336 52.381 27.04 27.04 43.14 4.79
490 491 1.323534 CGAATCAAATCGTGGGACGTC 59.676 52.381 7.13 7.13 43.14 4.34
491 492 1.355971 CGAATCAAATCGTGGGACGT 58.644 50.000 0.00 0.00 43.14 4.34
492 493 0.650512 CCGAATCAAATCGTGGGACG 59.349 55.000 0.00 0.00 44.19 4.79
493 494 1.664151 GACCGAATCAAATCGTGGGAC 59.336 52.381 0.00 0.00 41.16 4.46
494 495 1.406341 GGACCGAATCAAATCGTGGGA 60.406 52.381 0.00 0.00 41.16 4.37
495 496 1.014352 GGACCGAATCAAATCGTGGG 58.986 55.000 0.00 0.00 41.16 4.61
496 497 2.024176 AGGACCGAATCAAATCGTGG 57.976 50.000 0.00 0.00 41.16 4.94
497 498 3.555956 CCTTAGGACCGAATCAAATCGTG 59.444 47.826 0.00 0.00 41.16 4.35
514 515 4.737855 TCCAAGTCGAATTCCTCCTTAG 57.262 45.455 0.00 0.00 0.00 2.18
515 516 5.396436 GGAATCCAAGTCGAATTCCTCCTTA 60.396 44.000 15.56 0.00 38.14 2.69
516 517 4.518249 GAATCCAAGTCGAATTCCTCCTT 58.482 43.478 0.00 0.00 0.00 3.36
527 528 1.452108 GGCCCAGGAATCCAAGTCG 60.452 63.158 0.61 0.00 0.00 4.18
532 533 1.580066 AAATCGGGCCCAGGAATCCA 61.580 55.000 24.92 0.00 0.00 3.41
603 604 4.011517 GGTTGGACCGGGAAGCGA 62.012 66.667 6.32 0.00 0.00 4.93
614 615 2.042297 TGCATTTGTATGGAGGGTTGGA 59.958 45.455 0.00 0.00 32.15 3.53
657 659 0.545787 TGGCGGGGGAGAAGAGTTTA 60.546 55.000 0.00 0.00 0.00 2.01
692 694 1.278637 CGGTTGTCTTGTTCGTGGC 59.721 57.895 0.00 0.00 0.00 5.01
694 696 1.938861 CCCGGTTGTCTTGTTCGTG 59.061 57.895 0.00 0.00 0.00 4.35
695 697 1.890510 GCCCGGTTGTCTTGTTCGT 60.891 57.895 0.00 0.00 0.00 3.85
696 698 1.440938 TTGCCCGGTTGTCTTGTTCG 61.441 55.000 0.00 0.00 0.00 3.95
697 699 0.030235 GTTGCCCGGTTGTCTTGTTC 59.970 55.000 0.00 0.00 0.00 3.18
698 700 1.720694 CGTTGCCCGGTTGTCTTGTT 61.721 55.000 0.00 0.00 0.00 2.83
699 701 2.184167 CGTTGCCCGGTTGTCTTGT 61.184 57.895 0.00 0.00 0.00 3.16
700 702 2.637025 CGTTGCCCGGTTGTCTTG 59.363 61.111 0.00 0.00 0.00 3.02
841 862 3.678056 ACGAATCTGCCAGTTGTAAGA 57.322 42.857 0.00 0.00 0.00 2.10
847 868 4.832248 TCATAGAAACGAATCTGCCAGTT 58.168 39.130 0.00 0.00 0.00 3.16
880 901 1.983119 TAGCCTCCGGAATGCCCAAG 61.983 60.000 19.17 0.00 34.14 3.61
978 999 4.514577 CGAGGCGGCGTTGATCCT 62.515 66.667 9.37 5.61 0.00 3.24
1061 1082 1.062294 CGAGCTTGCTCTTCTTCATGC 59.938 52.381 18.75 0.00 34.70 4.06
1067 1088 0.246086 CACCTCGAGCTTGCTCTTCT 59.754 55.000 18.75 0.00 0.00 2.85
1085 1106 0.320421 GCTGTGAAGGTAAGGCGACA 60.320 55.000 0.00 0.00 0.00 4.35
1100 1121 0.391661 AATTGTGAGGCGATCGCTGT 60.392 50.000 36.25 25.13 39.31 4.40
1102 1123 0.108186 TCAATTGTGAGGCGATCGCT 60.108 50.000 36.25 23.50 39.31 4.93
1210 1243 0.821711 CCCTCTTTCCGTTGCCACAA 60.822 55.000 0.00 0.00 0.00 3.33
1219 1252 0.108138 ACATCGCTTCCCTCTTTCCG 60.108 55.000 0.00 0.00 0.00 4.30
1313 1346 1.414919 TCAAGGCACCGTACAACTCTT 59.585 47.619 0.00 0.00 0.00 2.85
1351 1384 2.200899 CATGTCGCCGATGATAACACA 58.799 47.619 0.00 0.00 0.00 3.72
1353 1386 1.217001 GCATGTCGCCGATGATAACA 58.783 50.000 0.00 0.00 32.94 2.41
1378 1411 1.040339 AGCAGGGCCTCGAAGACTAG 61.040 60.000 0.95 0.00 0.00 2.57
1379 1412 1.000486 AGCAGGGCCTCGAAGACTA 60.000 57.895 0.95 0.00 0.00 2.59
1604 1637 3.489738 GCAAGCATCAGTCAACTTGTTGT 60.490 43.478 12.44 0.00 41.22 3.32
1677 1710 4.492494 TCTTTTGAGCTCAGCATATCCA 57.508 40.909 17.43 0.00 0.00 3.41
1729 1762 3.173965 TGTAGAGCCTAGTTGCCTTCTT 58.826 45.455 0.00 0.00 0.00 2.52
1788 1821 9.618890 AAACAAGTAGCAAGATATGTATGTGAT 57.381 29.630 0.00 0.00 0.00 3.06
1835 1868 7.115663 GTCTTCACCGAAGCTTCAGATATATTC 59.884 40.741 25.47 4.56 39.29 1.75
1859 1892 9.974750 GAAAAACATTAGCAGAGTAATACTGTC 57.025 33.333 0.00 0.00 37.64 3.51
1918 1952 1.336424 GCGGGGCGAAAATCTTTTTCA 60.336 47.619 11.89 0.00 0.00 2.69
1926 1960 7.690952 TTATAATATAAAGCGGGGCGAAAAT 57.309 32.000 0.00 0.00 0.00 1.82
1927 1961 7.507733 TTTATAATATAAAGCGGGGCGAAAA 57.492 32.000 1.58 0.00 0.00 2.29
2012 2052 6.995686 TCAGCATTAAACCTTTGACTACTTGA 59.004 34.615 0.00 0.00 0.00 3.02
2085 2126 4.479993 GATGCTCTGCCGCACCCT 62.480 66.667 0.00 0.00 43.61 4.34
2164 2213 0.036010 ATCAACAACCTCCTCGCTGG 60.036 55.000 0.00 0.00 37.10 4.85
2192 2241 2.694616 TTAGCCGCCCCCAGGATT 60.695 61.111 0.00 0.00 33.47 3.01
2214 2263 0.179100 GATACTTGCAGCTCTGGCGA 60.179 55.000 0.00 0.00 44.37 5.54
2347 2396 2.504274 CCCCTCGCTACCGCCATAA 61.504 63.158 0.00 0.00 0.00 1.90
2502 2553 2.438254 GATGTGCCCCATGTGCGA 60.438 61.111 0.00 0.00 32.56 5.10
2539 2590 2.158219 TCTGGTGTGGAGGTCCTTAAGA 60.158 50.000 3.36 0.00 36.82 2.10
2598 2649 1.304282 GCCTGCCCCTGAAGATCAA 59.696 57.895 0.00 0.00 0.00 2.57
2620 2671 3.366985 GCCCTTTAGTTTGATTTGGGACG 60.367 47.826 0.00 0.00 35.40 4.79
2738 2789 0.042131 TCCTCCCTATGGACGGTGTT 59.958 55.000 0.00 0.00 35.03 3.32
2741 2792 1.233369 CCTCCTCCCTATGGACGGT 59.767 63.158 0.00 0.00 35.03 4.83
2788 2839 1.140134 TGGCCCTCCTAAAGTTGCCT 61.140 55.000 0.00 0.00 40.17 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.