Multiple sequence alignment - TraesCS3A01G160500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G160500 chr3A 100.000 3643 0 0 1 3643 160505932 160509574 0.000000e+00 6728.0
1 TraesCS3A01G160500 chr3A 93.218 752 49 1 2892 3641 81653606 81654357 0.000000e+00 1105.0
2 TraesCS3A01G160500 chr3D 90.833 2618 120 50 334 2894 141779365 141781919 0.000000e+00 3395.0
3 TraesCS3A01G160500 chr3D 88.040 301 31 3 2595 2892 141789270 141789568 5.790000e-93 351.0
4 TraesCS3A01G160500 chr3D 92.655 177 13 0 162 338 123971341 123971165 4.670000e-64 255.0
5 TraesCS3A01G160500 chr3D 97.143 35 1 0 2285 2319 656405 656371 3.930000e-05 60.2
6 TraesCS3A01G160500 chr3B 89.078 2582 139 75 369 2894 203871393 203873887 0.000000e+00 3073.0
7 TraesCS3A01G160500 chr3B 86.667 60 2 1 2292 2351 777194005 777194058 1.090000e-05 62.1
8 TraesCS3A01G160500 chr6A 94.282 752 41 1 2892 3641 109139607 109140358 0.000000e+00 1149.0
9 TraesCS3A01G160500 chr5A 93.475 751 47 2 2892 3640 680706680 680707430 0.000000e+00 1114.0
10 TraesCS3A01G160500 chr5A 92.667 750 52 3 2894 3641 476453796 476453048 0.000000e+00 1077.0
11 TraesCS3A01G160500 chr5A 92.667 750 51 2 2894 3641 585087900 585087153 0.000000e+00 1077.0
12 TraesCS3A01G160500 chr5A 91.322 749 61 1 2894 3638 390563714 390564462 0.000000e+00 1020.0
13 TraesCS3A01G160500 chr2A 92.866 771 34 1 2892 3641 240481601 240480831 0.000000e+00 1099.0
14 TraesCS3A01G160500 chr2A 91.758 182 13 1 162 341 691637062 691636881 6.040000e-63 252.0
15 TraesCS3A01G160500 chr7A 92.632 760 49 4 2885 3641 79634201 79633446 0.000000e+00 1086.0
16 TraesCS3A01G160500 chr7A 81.818 154 23 4 1 153 112522226 112522077 1.370000e-24 124.0
17 TraesCS3A01G160500 chr7A 84.043 94 9 1 2281 2374 23748944 23748857 6.480000e-13 86.1
18 TraesCS3A01G160500 chr1A 92.165 753 57 1 2891 3641 545760655 545761407 0.000000e+00 1062.0
19 TraesCS3A01G160500 chr1A 94.886 176 9 0 163 338 504587395 504587220 3.580000e-70 276.0
20 TraesCS3A01G160500 chr6B 98.171 164 2 1 1 163 471103405 471103242 5.950000e-73 285.0
21 TraesCS3A01G160500 chr4A 97.561 164 2 2 1 163 8203845 8203683 2.770000e-71 279.0
22 TraesCS3A01G160500 chr4A 94.675 169 9 0 167 335 625473479 625473311 2.790000e-66 263.0
23 TraesCS3A01G160500 chr2D 92.697 178 13 0 162 339 66092906 66093083 1.300000e-64 257.0
24 TraesCS3A01G160500 chr1D 93.182 176 11 1 162 337 427949232 427949058 1.300000e-64 257.0
25 TraesCS3A01G160500 chr6D 92.655 177 13 0 162 338 345168492 345168668 4.670000e-64 255.0
26 TraesCS3A01G160500 chr6D 90.798 163 12 3 1 161 319875235 319875396 7.920000e-52 215.0
27 TraesCS3A01G160500 chr5D 93.103 174 12 0 162 335 85697276 85697103 4.670000e-64 255.0
28 TraesCS3A01G160500 chr1B 95.062 162 6 2 1 161 179805121 179804961 1.680000e-63 254.0
29 TraesCS3A01G160500 chr7D 92.529 174 13 0 162 335 536310292 536310465 2.170000e-62 250.0
30 TraesCS3A01G160500 chr4D 93.548 155 8 2 1 154 308846150 308846303 2.830000e-56 230.0
31 TraesCS3A01G160500 chr4D 89.571 163 14 3 1 161 435979400 435979561 1.710000e-48 204.0
32 TraesCS3A01G160500 chr4D 85.938 64 3 1 2285 2348 481613730 481613673 3.040000e-06 63.9
33 TraesCS3A01G160500 chr7B 94.000 100 5 1 1 100 23975099 23975001 2.270000e-32 150.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G160500 chr3A 160505932 160509574 3642 False 6728 6728 100.000 1 3643 1 chr3A.!!$F2 3642
1 TraesCS3A01G160500 chr3A 81653606 81654357 751 False 1105 1105 93.218 2892 3641 1 chr3A.!!$F1 749
2 TraesCS3A01G160500 chr3D 141779365 141781919 2554 False 3395 3395 90.833 334 2894 1 chr3D.!!$F1 2560
3 TraesCS3A01G160500 chr3B 203871393 203873887 2494 False 3073 3073 89.078 369 2894 1 chr3B.!!$F1 2525
4 TraesCS3A01G160500 chr6A 109139607 109140358 751 False 1149 1149 94.282 2892 3641 1 chr6A.!!$F1 749
5 TraesCS3A01G160500 chr5A 680706680 680707430 750 False 1114 1114 93.475 2892 3640 1 chr5A.!!$F2 748
6 TraesCS3A01G160500 chr5A 476453048 476453796 748 True 1077 1077 92.667 2894 3641 1 chr5A.!!$R1 747
7 TraesCS3A01G160500 chr5A 585087153 585087900 747 True 1077 1077 92.667 2894 3641 1 chr5A.!!$R2 747
8 TraesCS3A01G160500 chr5A 390563714 390564462 748 False 1020 1020 91.322 2894 3638 1 chr5A.!!$F1 744
9 TraesCS3A01G160500 chr2A 240480831 240481601 770 True 1099 1099 92.866 2892 3641 1 chr2A.!!$R1 749
10 TraesCS3A01G160500 chr7A 79633446 79634201 755 True 1086 1086 92.632 2885 3641 1 chr7A.!!$R2 756
11 TraesCS3A01G160500 chr1A 545760655 545761407 752 False 1062 1062 92.165 2891 3641 1 chr1A.!!$F1 750

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
122 123 0.032912 TGTCCCGGGATACTGTAGCA 60.033 55.0 29.73 14.71 43.49 3.49 F
353 354 0.110486 TGAGGAGGTGGTTTCCAAGC 59.890 55.0 0.00 0.00 37.18 4.01 F
981 1041 0.169230 CTCACGGATCGGATCGGATC 59.831 60.0 26.93 26.93 41.67 3.36 F
1920 1982 1.128188 GGAAGGGCTCCATCCGGTAT 61.128 60.0 0.00 0.00 44.67 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1151 1212 0.460109 TCACATCTGCACCCGATTCG 60.460 55.000 0.00 0.0 0.00 3.34 R
1992 2054 1.354506 GTAGTCGGACGGGATGACG 59.645 63.158 1.89 0.0 37.69 4.35 R
2533 2595 0.321210 CCCTGCATCACACGTACCAA 60.321 55.000 0.00 0.0 0.00 3.67 R
2737 2821 0.584876 GTGACAAACAGTACGGGCAC 59.415 55.000 0.00 0.0 0.00 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.916983 AAACAGTGCAAATGCTACAGAA 57.083 36.364 6.97 0.00 42.66 3.02
22 23 4.916983 AACAGTGCAAATGCTACAGAAA 57.083 36.364 6.97 0.00 42.66 2.52
23 24 4.228912 ACAGTGCAAATGCTACAGAAAC 57.771 40.909 6.97 0.00 42.66 2.78
24 25 3.004734 ACAGTGCAAATGCTACAGAAACC 59.995 43.478 6.97 0.00 42.66 3.27
25 26 2.226437 AGTGCAAATGCTACAGAAACCG 59.774 45.455 6.97 0.00 42.66 4.44
26 27 2.225491 GTGCAAATGCTACAGAAACCGA 59.775 45.455 6.97 0.00 42.66 4.69
27 28 2.881513 TGCAAATGCTACAGAAACCGAA 59.118 40.909 6.97 0.00 42.66 4.30
28 29 3.316588 TGCAAATGCTACAGAAACCGAAA 59.683 39.130 6.97 0.00 42.66 3.46
29 30 3.668656 GCAAATGCTACAGAAACCGAAAC 59.331 43.478 0.00 0.00 38.21 2.78
30 31 4.791411 GCAAATGCTACAGAAACCGAAACA 60.791 41.667 0.00 0.00 38.21 2.83
31 32 4.749245 AATGCTACAGAAACCGAAACAG 57.251 40.909 0.00 0.00 0.00 3.16
32 33 3.188159 TGCTACAGAAACCGAAACAGT 57.812 42.857 0.00 0.00 0.00 3.55
33 34 4.325028 TGCTACAGAAACCGAAACAGTA 57.675 40.909 0.00 0.00 0.00 2.74
34 35 4.890088 TGCTACAGAAACCGAAACAGTAT 58.110 39.130 0.00 0.00 0.00 2.12
35 36 6.028146 TGCTACAGAAACCGAAACAGTATA 57.972 37.500 0.00 0.00 0.00 1.47
36 37 6.636705 TGCTACAGAAACCGAAACAGTATAT 58.363 36.000 0.00 0.00 0.00 0.86
37 38 7.101054 TGCTACAGAAACCGAAACAGTATATT 58.899 34.615 0.00 0.00 0.00 1.28
38 39 7.277098 TGCTACAGAAACCGAAACAGTATATTC 59.723 37.037 0.00 0.00 0.00 1.75
39 40 6.980051 ACAGAAACCGAAACAGTATATTCC 57.020 37.500 0.00 0.00 0.00 3.01
40 41 5.579511 ACAGAAACCGAAACAGTATATTCCG 59.420 40.000 0.00 0.00 0.00 4.30
41 42 4.569564 AGAAACCGAAACAGTATATTCCGC 59.430 41.667 0.00 0.00 0.00 5.54
42 43 3.814005 ACCGAAACAGTATATTCCGCT 57.186 42.857 0.00 0.00 0.00 5.52
43 44 4.924305 ACCGAAACAGTATATTCCGCTA 57.076 40.909 0.00 0.00 0.00 4.26
44 45 4.614946 ACCGAAACAGTATATTCCGCTAC 58.385 43.478 0.00 0.00 0.00 3.58
45 46 4.098349 ACCGAAACAGTATATTCCGCTACA 59.902 41.667 0.00 0.00 0.00 2.74
46 47 4.680110 CCGAAACAGTATATTCCGCTACAG 59.320 45.833 0.00 0.00 0.00 2.74
47 48 5.279384 CGAAACAGTATATTCCGCTACAGT 58.721 41.667 0.00 0.00 0.00 3.55
48 49 6.432936 CGAAACAGTATATTCCGCTACAGTA 58.567 40.000 0.00 0.00 0.00 2.74
49 50 7.082602 CGAAACAGTATATTCCGCTACAGTAT 58.917 38.462 0.00 0.00 0.00 2.12
50 51 7.060748 CGAAACAGTATATTCCGCTACAGTATG 59.939 40.741 0.00 0.00 46.00 2.39
51 52 5.710984 ACAGTATATTCCGCTACAGTATGC 58.289 41.667 0.00 0.00 42.53 3.14
52 53 5.243060 ACAGTATATTCCGCTACAGTATGCA 59.757 40.000 0.00 0.00 42.53 3.96
53 54 6.156519 CAGTATATTCCGCTACAGTATGCAA 58.843 40.000 0.00 0.00 42.53 4.08
54 55 6.645003 CAGTATATTCCGCTACAGTATGCAAA 59.355 38.462 0.00 0.00 42.53 3.68
55 56 5.924475 ATATTCCGCTACAGTATGCAAAC 57.076 39.130 0.00 0.00 42.53 2.93
56 57 2.753055 TCCGCTACAGTATGCAAACA 57.247 45.000 0.00 0.00 42.53 2.83
57 58 2.616960 TCCGCTACAGTATGCAAACAG 58.383 47.619 0.00 0.00 42.53 3.16
58 59 2.028476 TCCGCTACAGTATGCAAACAGT 60.028 45.455 0.00 0.00 42.53 3.55
59 60 3.193903 TCCGCTACAGTATGCAAACAGTA 59.806 43.478 0.00 0.00 42.53 2.74
60 61 3.930229 CCGCTACAGTATGCAAACAGTAA 59.070 43.478 0.00 0.00 42.53 2.24
61 62 4.570772 CCGCTACAGTATGCAAACAGTAAT 59.429 41.667 0.00 0.00 42.53 1.89
62 63 5.064707 CCGCTACAGTATGCAAACAGTAATT 59.935 40.000 0.00 0.00 42.53 1.40
63 64 6.185399 CGCTACAGTATGCAAACAGTAATTC 58.815 40.000 0.00 0.00 42.53 2.17
64 65 6.487103 GCTACAGTATGCAAACAGTAATTCC 58.513 40.000 0.00 0.00 42.53 3.01
65 66 5.545658 ACAGTATGCAAACAGTAATTCCG 57.454 39.130 0.00 0.00 42.53 4.30
66 67 4.394920 ACAGTATGCAAACAGTAATTCCGG 59.605 41.667 0.00 0.00 42.53 5.14
67 68 2.939460 ATGCAAACAGTAATTCCGGC 57.061 45.000 0.00 0.00 0.00 6.13
68 69 1.904287 TGCAAACAGTAATTCCGGCT 58.096 45.000 0.00 0.00 0.00 5.52
69 70 3.060736 TGCAAACAGTAATTCCGGCTA 57.939 42.857 0.00 0.00 0.00 3.93
70 71 2.745281 TGCAAACAGTAATTCCGGCTAC 59.255 45.455 0.00 0.00 0.00 3.58
71 72 2.745281 GCAAACAGTAATTCCGGCTACA 59.255 45.455 0.00 0.00 0.00 2.74
72 73 3.181510 GCAAACAGTAATTCCGGCTACAG 60.182 47.826 0.00 0.00 0.00 2.74
73 74 3.975168 AACAGTAATTCCGGCTACAGT 57.025 42.857 0.00 0.00 0.00 3.55
74 75 3.975168 ACAGTAATTCCGGCTACAGTT 57.025 42.857 0.00 0.00 0.00 3.16
75 76 3.858247 ACAGTAATTCCGGCTACAGTTC 58.142 45.455 0.00 0.00 0.00 3.01
76 77 3.259876 ACAGTAATTCCGGCTACAGTTCA 59.740 43.478 0.00 0.00 0.00 3.18
77 78 4.081087 ACAGTAATTCCGGCTACAGTTCAT 60.081 41.667 0.00 0.00 0.00 2.57
78 79 4.508124 CAGTAATTCCGGCTACAGTTCATC 59.492 45.833 0.00 0.00 0.00 2.92
79 80 2.622064 ATTCCGGCTACAGTTCATCC 57.378 50.000 0.00 0.00 0.00 3.51
80 81 1.568504 TTCCGGCTACAGTTCATCCT 58.431 50.000 0.00 0.00 0.00 3.24
81 82 0.824109 TCCGGCTACAGTTCATCCTG 59.176 55.000 0.00 0.00 38.45 3.86
82 83 0.811616 CCGGCTACAGTTCATCCTGC 60.812 60.000 0.00 0.00 35.83 4.85
83 84 0.811616 CGGCTACAGTTCATCCTGCC 60.812 60.000 0.00 0.00 35.83 4.85
84 85 0.811616 GGCTACAGTTCATCCTGCCG 60.812 60.000 0.00 0.00 35.83 5.69
85 86 0.108138 GCTACAGTTCATCCTGCCGT 60.108 55.000 0.00 0.00 35.83 5.68
86 87 1.645034 CTACAGTTCATCCTGCCGTG 58.355 55.000 0.00 0.00 35.83 4.94
87 88 0.391130 TACAGTTCATCCTGCCGTGC 60.391 55.000 0.00 0.00 35.83 5.34
88 89 2.045926 AGTTCATCCTGCCGTGCC 60.046 61.111 0.00 0.00 0.00 5.01
89 90 2.045926 GTTCATCCTGCCGTGCCT 60.046 61.111 0.00 0.00 0.00 4.75
90 91 1.675641 GTTCATCCTGCCGTGCCTT 60.676 57.895 0.00 0.00 0.00 4.35
91 92 1.377202 TTCATCCTGCCGTGCCTTC 60.377 57.895 0.00 0.00 0.00 3.46
92 93 1.841302 TTCATCCTGCCGTGCCTTCT 61.841 55.000 0.00 0.00 0.00 2.85
93 94 2.110967 CATCCTGCCGTGCCTTCTG 61.111 63.158 0.00 0.00 0.00 3.02
94 95 2.596851 ATCCTGCCGTGCCTTCTGT 61.597 57.895 0.00 0.00 0.00 3.41
95 96 1.264749 ATCCTGCCGTGCCTTCTGTA 61.265 55.000 0.00 0.00 0.00 2.74
96 97 1.221840 CCTGCCGTGCCTTCTGTAT 59.778 57.895 0.00 0.00 0.00 2.29
97 98 0.392998 CCTGCCGTGCCTTCTGTATT 60.393 55.000 0.00 0.00 0.00 1.89
98 99 1.453155 CTGCCGTGCCTTCTGTATTT 58.547 50.000 0.00 0.00 0.00 1.40
99 100 2.627945 CTGCCGTGCCTTCTGTATTTA 58.372 47.619 0.00 0.00 0.00 1.40
100 101 2.351726 CTGCCGTGCCTTCTGTATTTAC 59.648 50.000 0.00 0.00 0.00 2.01
101 102 2.289756 TGCCGTGCCTTCTGTATTTACA 60.290 45.455 0.00 0.00 34.56 2.41
102 103 2.095372 GCCGTGCCTTCTGTATTTACAC 59.905 50.000 0.00 0.00 31.93 2.90
103 104 3.596214 CCGTGCCTTCTGTATTTACACT 58.404 45.455 0.00 0.00 31.93 3.55
104 105 3.370978 CCGTGCCTTCTGTATTTACACTG 59.629 47.826 0.00 0.00 31.93 3.66
105 106 3.994392 CGTGCCTTCTGTATTTACACTGT 59.006 43.478 0.00 0.00 31.93 3.55
106 107 4.091509 CGTGCCTTCTGTATTTACACTGTC 59.908 45.833 0.00 0.00 31.93 3.51
107 108 4.392138 GTGCCTTCTGTATTTACACTGTCC 59.608 45.833 0.00 0.00 31.93 4.02
108 109 3.939592 GCCTTCTGTATTTACACTGTCCC 59.060 47.826 0.00 0.00 31.93 4.46
109 110 4.181578 CCTTCTGTATTTACACTGTCCCG 58.818 47.826 0.00 0.00 31.93 5.14
110 111 3.880047 TCTGTATTTACACTGTCCCGG 57.120 47.619 0.00 0.00 31.93 5.73
111 112 2.498481 TCTGTATTTACACTGTCCCGGG 59.502 50.000 16.85 16.85 31.93 5.73
112 113 2.498481 CTGTATTTACACTGTCCCGGGA 59.502 50.000 22.63 22.63 31.93 5.14
113 114 3.109151 TGTATTTACACTGTCCCGGGAT 58.891 45.455 29.73 13.34 0.00 3.85
114 115 4.288398 TGTATTTACACTGTCCCGGGATA 58.712 43.478 29.73 24.56 0.00 2.59
115 116 3.832615 ATTTACACTGTCCCGGGATAC 57.167 47.619 29.73 16.72 0.00 2.24
116 117 2.537633 TTACACTGTCCCGGGATACT 57.462 50.000 29.73 10.38 0.00 2.12
117 118 1.771565 TACACTGTCCCGGGATACTG 58.228 55.000 29.73 24.07 45.15 2.74
118 119 0.252103 ACACTGTCCCGGGATACTGT 60.252 55.000 29.73 24.75 43.49 3.55
119 120 1.006281 ACACTGTCCCGGGATACTGTA 59.994 52.381 29.73 8.33 43.49 2.74
120 121 1.681793 CACTGTCCCGGGATACTGTAG 59.318 57.143 29.73 19.09 43.49 2.74
121 122 0.674534 CTGTCCCGGGATACTGTAGC 59.325 60.000 29.73 11.84 43.49 3.58
122 123 0.032912 TGTCCCGGGATACTGTAGCA 60.033 55.000 29.73 14.71 43.49 3.49
123 124 1.339097 GTCCCGGGATACTGTAGCAT 58.661 55.000 29.73 0.00 43.49 3.79
124 125 1.272769 GTCCCGGGATACTGTAGCATC 59.727 57.143 29.73 4.80 43.49 3.91
125 126 0.608640 CCCGGGATACTGTAGCATCC 59.391 60.000 18.48 2.64 43.49 3.51
153 154 2.103143 CGCTGCACGGTAGAGGAG 59.897 66.667 0.00 0.00 38.44 3.69
154 155 2.496817 GCTGCACGGTAGAGGAGG 59.503 66.667 0.00 0.00 0.00 4.30
155 156 2.496817 CTGCACGGTAGAGGAGGC 59.503 66.667 0.00 0.00 0.00 4.70
156 157 3.417275 CTGCACGGTAGAGGAGGCG 62.417 68.421 0.00 0.00 0.00 5.52
157 158 3.450115 GCACGGTAGAGGAGGCGT 61.450 66.667 0.00 0.00 0.00 5.68
158 159 3.003113 GCACGGTAGAGGAGGCGTT 62.003 63.158 0.00 0.00 0.00 4.84
159 160 1.139095 CACGGTAGAGGAGGCGTTC 59.861 63.158 0.00 0.00 0.00 3.95
168 169 3.335737 GGAGGCGTTCCGTTACTAC 57.664 57.895 0.00 0.00 35.91 2.73
169 170 0.813821 GGAGGCGTTCCGTTACTACT 59.186 55.000 0.00 0.00 35.91 2.57
170 171 2.017049 GGAGGCGTTCCGTTACTACTA 58.983 52.381 0.00 0.00 35.91 1.82
171 172 2.032675 GGAGGCGTTCCGTTACTACTAG 59.967 54.545 0.00 0.00 35.91 2.57
172 173 2.680339 GAGGCGTTCCGTTACTACTAGT 59.320 50.000 0.00 0.00 37.47 2.57
173 174 3.871594 GAGGCGTTCCGTTACTACTAGTA 59.128 47.826 1.89 1.89 37.47 1.82
174 175 4.455606 AGGCGTTCCGTTACTACTAGTAT 58.544 43.478 2.33 0.00 37.47 2.12
175 176 4.274459 AGGCGTTCCGTTACTACTAGTATG 59.726 45.833 2.33 0.74 37.47 2.39
176 177 4.273480 GGCGTTCCGTTACTACTAGTATGA 59.727 45.833 2.33 0.00 29.64 2.15
177 178 5.438972 GCGTTCCGTTACTACTAGTATGAG 58.561 45.833 2.33 0.00 29.64 2.90
178 179 5.007136 GCGTTCCGTTACTACTAGTATGAGT 59.993 44.000 2.33 2.42 29.64 3.41
179 180 6.201044 GCGTTCCGTTACTACTAGTATGAGTA 59.799 42.308 2.33 1.37 29.64 2.59
180 181 7.559845 CGTTCCGTTACTACTAGTATGAGTAC 58.440 42.308 2.33 0.00 29.64 2.73
181 182 7.306866 CGTTCCGTTACTACTAGTATGAGTACC 60.307 44.444 2.33 0.00 29.64 3.34
182 183 7.124573 TCCGTTACTACTAGTATGAGTACCA 57.875 40.000 2.33 0.00 29.64 3.25
183 184 7.739825 TCCGTTACTACTAGTATGAGTACCAT 58.260 38.462 2.33 0.00 39.25 3.55
184 185 7.875041 TCCGTTACTACTAGTATGAGTACCATC 59.125 40.741 2.33 0.00 36.71 3.51
185 186 7.658982 CCGTTACTACTAGTATGAGTACCATCA 59.341 40.741 2.33 0.00 36.71 3.07
186 187 8.494347 CGTTACTACTAGTATGAGTACCATCAC 58.506 40.741 2.33 0.00 36.71 3.06
187 188 9.334947 GTTACTACTAGTATGAGTACCATCACA 57.665 37.037 2.33 0.00 36.71 3.58
188 189 7.804843 ACTACTAGTATGAGTACCATCACAC 57.195 40.000 2.33 0.00 36.71 3.82
189 190 7.344134 ACTACTAGTATGAGTACCATCACACA 58.656 38.462 2.33 0.00 36.71 3.72
190 191 7.999545 ACTACTAGTATGAGTACCATCACACAT 59.000 37.037 2.33 0.00 36.71 3.21
191 192 9.503399 CTACTAGTATGAGTACCATCACACATA 57.497 37.037 2.33 0.00 36.71 2.29
192 193 8.941995 ACTAGTATGAGTACCATCACACATAT 57.058 34.615 0.00 0.00 35.42 1.78
193 194 8.797438 ACTAGTATGAGTACCATCACACATATG 58.203 37.037 0.00 0.00 35.42 1.78
194 195 7.839680 AGTATGAGTACCATCACACATATGA 57.160 36.000 10.38 0.00 35.42 2.15
195 196 8.250143 AGTATGAGTACCATCACACATATGAA 57.750 34.615 10.38 0.00 35.42 2.57
196 197 8.363390 AGTATGAGTACCATCACACATATGAAG 58.637 37.037 10.38 4.05 35.42 3.02
197 198 5.917462 TGAGTACCATCACACATATGAAGG 58.083 41.667 10.38 0.00 42.12 3.46
198 199 4.708177 AGTACCATCACACATATGAAGGC 58.292 43.478 10.38 0.00 40.44 4.35
199 200 3.650281 ACCATCACACATATGAAGGCA 57.350 42.857 10.38 0.00 40.44 4.75
200 201 3.966979 ACCATCACACATATGAAGGCAA 58.033 40.909 10.38 0.00 40.44 4.52
201 202 4.343231 ACCATCACACATATGAAGGCAAA 58.657 39.130 10.38 0.00 40.44 3.68
202 203 4.771577 ACCATCACACATATGAAGGCAAAA 59.228 37.500 10.38 0.00 40.44 2.44
203 204 5.422970 ACCATCACACATATGAAGGCAAAAT 59.577 36.000 10.38 0.00 40.44 1.82
204 205 5.751509 CCATCACACATATGAAGGCAAAATG 59.248 40.000 10.38 0.00 31.16 2.32
205 206 5.981088 TCACACATATGAAGGCAAAATGT 57.019 34.783 10.38 0.00 35.99 2.71
206 207 5.712004 TCACACATATGAAGGCAAAATGTG 58.288 37.500 10.38 9.98 46.81 3.21
210 211 7.087409 CACATATGAAGGCAAAATGTGTCTA 57.913 36.000 10.38 0.00 43.11 2.59
211 212 7.709947 CACATATGAAGGCAAAATGTGTCTAT 58.290 34.615 10.38 0.00 43.11 1.98
212 213 8.839343 CACATATGAAGGCAAAATGTGTCTATA 58.161 33.333 10.38 0.00 43.11 1.31
213 214 9.060347 ACATATGAAGGCAAAATGTGTCTATAG 57.940 33.333 10.38 0.00 43.11 1.31
214 215 5.818136 TGAAGGCAAAATGTGTCTATAGC 57.182 39.130 0.00 0.00 43.11 2.97
215 216 4.640201 TGAAGGCAAAATGTGTCTATAGCC 59.360 41.667 0.00 0.00 43.11 3.93
216 217 4.510167 AGGCAAAATGTGTCTATAGCCT 57.490 40.909 0.00 0.00 41.69 4.58
219 220 6.884280 GGCAAAATGTGTCTATAGCCTAAT 57.116 37.500 0.00 0.00 37.89 1.73
220 221 7.979444 GGCAAAATGTGTCTATAGCCTAATA 57.021 36.000 0.00 0.00 37.89 0.98
221 222 8.391075 GGCAAAATGTGTCTATAGCCTAATAA 57.609 34.615 0.00 0.00 37.89 1.40
222 223 8.846211 GGCAAAATGTGTCTATAGCCTAATAAA 58.154 33.333 0.00 0.00 37.89 1.40
236 237 7.839680 AGCCTAATAAATAAAGGGTTCCATG 57.160 36.000 0.00 0.00 37.88 3.66
237 238 7.362234 AGCCTAATAAATAAAGGGTTCCATGT 58.638 34.615 0.00 0.00 37.88 3.21
238 239 7.844269 AGCCTAATAAATAAAGGGTTCCATGTT 59.156 33.333 0.00 0.00 37.88 2.71
239 240 9.138596 GCCTAATAAATAAAGGGTTCCATGTTA 57.861 33.333 0.00 0.00 0.00 2.41
244 245 9.707957 ATAAATAAAGGGTTCCATGTTATCACA 57.292 29.630 0.00 0.00 37.31 3.58
245 246 7.404671 AATAAAGGGTTCCATGTTATCACAC 57.595 36.000 0.00 0.00 35.03 3.82
246 247 4.380843 AAGGGTTCCATGTTATCACACA 57.619 40.909 0.00 0.00 35.03 3.72
247 248 4.591321 AGGGTTCCATGTTATCACACAT 57.409 40.909 0.00 0.00 37.93 3.21
248 249 5.708736 AGGGTTCCATGTTATCACACATA 57.291 39.130 0.00 0.00 35.51 2.29
249 250 6.266131 AGGGTTCCATGTTATCACACATAT 57.734 37.500 0.00 0.00 35.51 1.78
250 251 6.064060 AGGGTTCCATGTTATCACACATATG 58.936 40.000 0.00 0.00 35.51 1.78
251 252 5.827797 GGGTTCCATGTTATCACACATATGT 59.172 40.000 1.41 1.41 40.80 2.29
252 253 6.321181 GGGTTCCATGTTATCACACATATGTT 59.679 38.462 5.37 0.00 36.72 2.71
253 254 7.500892 GGGTTCCATGTTATCACACATATGTTA 59.499 37.037 5.37 0.00 36.72 2.41
254 255 8.342634 GGTTCCATGTTATCACACATATGTTAC 58.657 37.037 5.37 0.00 36.72 2.50
255 256 9.109393 GTTCCATGTTATCACACATATGTTACT 57.891 33.333 5.37 0.00 36.72 2.24
256 257 8.887036 TCCATGTTATCACACATATGTTACTC 57.113 34.615 5.37 0.00 36.72 2.59
257 258 7.931407 TCCATGTTATCACACATATGTTACTCC 59.069 37.037 5.37 0.00 36.72 3.85
258 259 7.173218 CCATGTTATCACACATATGTTACTCCC 59.827 40.741 5.37 0.00 36.72 4.30
259 260 6.588204 TGTTATCACACATATGTTACTCCCC 58.412 40.000 5.37 0.00 36.72 4.81
260 261 6.157123 TGTTATCACACATATGTTACTCCCCA 59.843 38.462 5.37 0.00 36.72 4.96
261 262 4.481368 TCACACATATGTTACTCCCCAC 57.519 45.455 5.37 0.00 36.72 4.61
262 263 4.101114 TCACACATATGTTACTCCCCACT 58.899 43.478 5.37 0.00 36.72 4.00
263 264 5.274015 TCACACATATGTTACTCCCCACTA 58.726 41.667 5.37 0.00 36.72 2.74
264 265 5.903010 TCACACATATGTTACTCCCCACTAT 59.097 40.000 5.37 0.00 36.72 2.12
265 266 7.070629 TCACACATATGTTACTCCCCACTATA 58.929 38.462 5.37 0.00 36.72 1.31
266 267 7.232737 TCACACATATGTTACTCCCCACTATAG 59.767 40.741 5.37 0.00 36.72 1.31
267 268 7.232737 CACACATATGTTACTCCCCACTATAGA 59.767 40.741 5.37 0.00 36.72 1.98
268 269 7.451877 ACACATATGTTACTCCCCACTATAGAG 59.548 40.741 5.37 0.00 34.46 2.43
269 270 7.670140 CACATATGTTACTCCCCACTATAGAGA 59.330 40.741 5.37 0.00 0.00 3.10
270 271 8.402683 ACATATGTTACTCCCCACTATAGAGAT 58.597 37.037 6.78 0.00 0.00 2.75
271 272 9.922477 CATATGTTACTCCCCACTATAGAGATA 57.078 37.037 6.78 0.00 0.00 1.98
274 275 8.515927 TGTTACTCCCCACTATAGAGATAGTA 57.484 38.462 6.78 4.79 45.42 1.82
275 276 8.952602 TGTTACTCCCCACTATAGAGATAGTAA 58.047 37.037 6.78 9.89 45.42 2.24
276 277 9.230122 GTTACTCCCCACTATAGAGATAGTAAC 57.770 40.741 20.08 20.08 45.42 2.50
277 278 6.474630 ACTCCCCACTATAGAGATAGTAACG 58.525 44.000 6.78 0.00 45.42 3.18
278 279 6.044171 ACTCCCCACTATAGAGATAGTAACGT 59.956 42.308 6.78 0.00 45.42 3.99
279 280 7.236432 ACTCCCCACTATAGAGATAGTAACGTA 59.764 40.741 6.78 0.00 45.42 3.57
280 281 7.619050 TCCCCACTATAGAGATAGTAACGTAG 58.381 42.308 6.78 0.00 45.42 3.51
281 282 7.455953 TCCCCACTATAGAGATAGTAACGTAGA 59.544 40.741 6.78 0.00 45.42 2.59
282 283 7.548780 CCCCACTATAGAGATAGTAACGTAGAC 59.451 44.444 6.78 0.00 45.42 2.59
283 284 8.313292 CCCACTATAGAGATAGTAACGTAGACT 58.687 40.741 6.78 8.02 45.42 3.24
296 297 7.993101 AGTAACGTAGACTAATAACATGAGCA 58.007 34.615 0.00 0.00 0.00 4.26
297 298 8.630917 AGTAACGTAGACTAATAACATGAGCAT 58.369 33.333 0.00 0.00 0.00 3.79
298 299 7.700322 AACGTAGACTAATAACATGAGCATG 57.300 36.000 8.82 8.82 44.15 4.06
311 312 5.919272 CATGAGCATGTTACTAGTCCATG 57.081 43.478 22.27 22.27 39.13 3.66
312 313 5.363101 CATGAGCATGTTACTAGTCCATGT 58.637 41.667 24.95 16.77 38.53 3.21
313 314 5.420725 TGAGCATGTTACTAGTCCATGTT 57.579 39.130 24.95 21.91 38.53 2.71
314 315 6.538945 TGAGCATGTTACTAGTCCATGTTA 57.461 37.500 24.95 14.95 38.53 2.41
315 316 6.338146 TGAGCATGTTACTAGTCCATGTTAC 58.662 40.000 24.95 19.04 38.53 2.50
316 317 6.154534 TGAGCATGTTACTAGTCCATGTTACT 59.845 38.462 24.95 17.92 38.53 2.24
317 318 7.340999 TGAGCATGTTACTAGTCCATGTTACTA 59.659 37.037 24.95 13.46 38.53 1.82
318 319 7.490000 AGCATGTTACTAGTCCATGTTACTAC 58.510 38.462 24.95 14.02 38.53 2.73
319 320 6.700520 GCATGTTACTAGTCCATGTTACTACC 59.299 42.308 24.95 11.36 38.53 3.18
320 321 6.780457 TGTTACTAGTCCATGTTACTACCC 57.220 41.667 0.00 0.00 0.00 3.69
321 322 6.255287 TGTTACTAGTCCATGTTACTACCCA 58.745 40.000 0.00 0.00 0.00 4.51
322 323 6.899075 TGTTACTAGTCCATGTTACTACCCAT 59.101 38.462 0.00 0.00 0.00 4.00
323 324 7.400915 TGTTACTAGTCCATGTTACTACCCATT 59.599 37.037 0.00 0.00 0.00 3.16
324 325 6.235231 ACTAGTCCATGTTACTACCCATTG 57.765 41.667 0.00 0.00 0.00 2.82
325 326 5.724854 ACTAGTCCATGTTACTACCCATTGT 59.275 40.000 0.00 0.00 0.00 2.71
326 327 4.843728 AGTCCATGTTACTACCCATTGTG 58.156 43.478 0.00 0.00 0.00 3.33
327 328 3.945285 GTCCATGTTACTACCCATTGTGG 59.055 47.826 0.00 0.00 37.25 4.17
328 329 2.687935 CCATGTTACTACCCATTGTGGC 59.312 50.000 0.00 0.00 35.79 5.01
329 330 3.620488 CATGTTACTACCCATTGTGGCT 58.380 45.455 0.00 0.00 35.79 4.75
330 331 4.384757 CCATGTTACTACCCATTGTGGCTA 60.385 45.833 0.00 0.00 35.79 3.93
331 332 4.481368 TGTTACTACCCATTGTGGCTAG 57.519 45.455 0.00 0.00 35.79 3.42
332 333 3.841845 TGTTACTACCCATTGTGGCTAGT 59.158 43.478 8.55 8.55 35.79 2.57
340 341 2.158986 CCATTGTGGCTAGTCTGAGGAG 60.159 54.545 0.00 0.00 0.00 3.69
341 342 1.561643 TTGTGGCTAGTCTGAGGAGG 58.438 55.000 0.00 0.00 0.00 4.30
351 352 1.420138 GTCTGAGGAGGTGGTTTCCAA 59.580 52.381 0.00 0.00 37.18 3.53
353 354 0.110486 TGAGGAGGTGGTTTCCAAGC 59.890 55.000 0.00 0.00 37.18 4.01
357 358 1.285078 GGAGGTGGTTTCCAAGCCTAT 59.715 52.381 0.00 0.00 31.29 2.57
358 359 2.644676 GAGGTGGTTTCCAAGCCTATC 58.355 52.381 0.00 0.00 31.29 2.08
361 362 3.785887 AGGTGGTTTCCAAGCCTATCATA 59.214 43.478 0.00 0.00 34.18 2.15
366 370 3.857157 TTCCAAGCCTATCATACACCC 57.143 47.619 0.00 0.00 0.00 4.61
404 408 1.548973 CTAATTCGCTACGCCGCCTG 61.549 60.000 0.00 0.00 0.00 4.85
435 448 0.702902 GCTCCCATCCATCCATCCAT 59.297 55.000 0.00 0.00 0.00 3.41
436 449 1.918262 GCTCCCATCCATCCATCCATA 59.082 52.381 0.00 0.00 0.00 2.74
446 459 2.759839 TCCATCCATACTCCACGGTA 57.240 50.000 0.00 0.00 0.00 4.02
476 489 4.657824 CGTGCCGTCCTCGTGGTT 62.658 66.667 2.99 0.00 35.01 3.67
507 520 1.971357 GATACACATCCACCGATCCCT 59.029 52.381 0.00 0.00 0.00 4.20
534 548 2.259204 CGAGTGGGCCGTCGTTTA 59.741 61.111 17.50 0.00 0.00 2.01
537 551 1.702491 GAGTGGGCCGTCGTTTATGC 61.702 60.000 0.00 0.00 0.00 3.14
540 554 1.153429 GGGCCGTCGTTTATGCTCT 60.153 57.895 0.00 0.00 0.00 4.09
541 555 1.152383 GGGCCGTCGTTTATGCTCTC 61.152 60.000 0.00 0.00 0.00 3.20
542 556 0.179108 GGCCGTCGTTTATGCTCTCT 60.179 55.000 0.00 0.00 0.00 3.10
543 557 1.641577 GCCGTCGTTTATGCTCTCTT 58.358 50.000 0.00 0.00 0.00 2.85
544 558 1.588861 GCCGTCGTTTATGCTCTCTTC 59.411 52.381 0.00 0.00 0.00 2.87
545 559 2.194271 CCGTCGTTTATGCTCTCTTCC 58.806 52.381 0.00 0.00 0.00 3.46
546 560 1.846782 CGTCGTTTATGCTCTCTTCCG 59.153 52.381 0.00 0.00 0.00 4.30
547 561 2.194271 GTCGTTTATGCTCTCTTCCGG 58.806 52.381 0.00 0.00 0.00 5.14
603 617 3.181290 GCCGTTACCACCGCGTAC 61.181 66.667 4.92 0.00 0.00 3.67
612 626 0.797249 CCACCGCGTACGAGAAAGAG 60.797 60.000 21.65 4.99 43.93 2.85
632 646 4.955089 GATCTGACCGATCGGCTC 57.045 61.111 33.62 26.84 39.22 4.70
633 647 1.287503 GATCTGACCGATCGGCTCC 59.712 63.158 33.62 22.11 39.22 4.70
634 648 2.465097 GATCTGACCGATCGGCTCCG 62.465 65.000 33.62 23.19 39.22 4.63
763 801 2.357034 TGAAGTTGTCGCGCTCCC 60.357 61.111 5.56 0.00 0.00 4.30
925 985 3.199677 CTGCTACTACACTCGAGCTACT 58.800 50.000 13.61 0.00 35.89 2.57
926 986 3.196463 TGCTACTACACTCGAGCTACTC 58.804 50.000 13.61 0.00 35.89 2.59
927 987 3.118702 TGCTACTACACTCGAGCTACTCT 60.119 47.826 13.61 0.00 35.89 3.24
929 989 4.025480 GCTACTACACTCGAGCTACTCTTC 60.025 50.000 13.61 0.00 32.04 2.87
930 990 4.210724 ACTACACTCGAGCTACTCTTCT 57.789 45.455 13.61 0.00 0.00 2.85
931 991 3.936453 ACTACACTCGAGCTACTCTTCTG 59.064 47.826 13.61 2.10 0.00 3.02
932 992 1.470890 ACACTCGAGCTACTCTTCTGC 59.529 52.381 13.61 0.00 0.00 4.26
934 994 1.098869 CTCGAGCTACTCTTCTGCCA 58.901 55.000 0.00 0.00 0.00 4.92
936 996 0.814457 CGAGCTACTCTTCTGCCACT 59.186 55.000 0.00 0.00 0.00 4.00
937 997 1.202245 CGAGCTACTCTTCTGCCACTC 60.202 57.143 0.00 0.00 0.00 3.51
938 998 2.099405 GAGCTACTCTTCTGCCACTCT 58.901 52.381 0.00 0.00 0.00 3.24
977 1037 0.945099 TTCTCTCACGGATCGGATCG 59.055 55.000 11.62 9.49 0.00 3.69
978 1038 0.885150 TCTCTCACGGATCGGATCGG 60.885 60.000 20.14 20.14 35.90 4.18
979 1039 0.885150 CTCTCACGGATCGGATCGGA 60.885 60.000 26.28 15.72 34.17 4.55
980 1040 0.250770 TCTCACGGATCGGATCGGAT 60.251 55.000 26.28 15.03 34.17 4.18
981 1041 0.169230 CTCACGGATCGGATCGGATC 59.831 60.000 26.93 26.93 41.67 3.36
1003 1063 5.145564 TCAGATCAGATCAGATCACCATGA 58.854 41.667 24.89 17.81 45.39 3.07
1009 1069 1.870064 TCAGATCACCATGAGCTCCA 58.130 50.000 12.15 0.00 39.11 3.86
1017 1077 1.202758 ACCATGAGCTCCAACGTTCAA 60.203 47.619 12.15 0.00 0.00 2.69
1022 1082 1.166531 AGCTCCAACGTTCAAGGTGC 61.167 55.000 17.67 17.67 41.04 5.01
1054 1114 1.372087 GATCCTGAGGTTTGCTGCGG 61.372 60.000 0.00 0.00 0.00 5.69
1055 1115 2.129555 ATCCTGAGGTTTGCTGCGGT 62.130 55.000 0.00 0.00 0.00 5.68
1082 1142 2.079088 TTGTTGGGCTGGCTCATGGA 62.079 55.000 0.00 0.00 0.00 3.41
1135 1196 1.338020 GTTTTTGCTGTCAGGTGAGGG 59.662 52.381 1.14 0.00 0.00 4.30
1151 1212 1.895966 GGGTGAAGTCCCCGTCTAC 59.104 63.158 0.00 0.00 41.54 2.59
1199 1260 2.243221 CTCCCCCTCCTCAATTTGTGAT 59.757 50.000 0.12 0.00 35.07 3.06
1205 1266 4.133078 CCTCCTCAATTTGTGATAGAGCC 58.867 47.826 0.12 0.00 36.14 4.70
1210 1271 4.334552 TCAATTTGTGATAGAGCCAAGCA 58.665 39.130 0.00 0.00 0.00 3.91
1440 1502 6.566197 TTTTGTGGTTTCTTTGCACAAATT 57.434 29.167 2.39 0.00 42.72 1.82
1468 1530 4.988708 AATGCAAAACAGCCAAAATACG 57.011 36.364 0.00 0.00 0.00 3.06
1473 1535 4.615541 GCAAAACAGCCAAAATACGACTAC 59.384 41.667 0.00 0.00 0.00 2.73
1488 1550 5.416271 ACGACTACTATGTTGGACCAATT 57.584 39.130 10.83 4.06 0.00 2.32
1493 1555 7.222224 CGACTACTATGTTGGACCAATTAAGTC 59.778 40.741 10.83 14.92 0.00 3.01
1523 1585 6.551227 TCAGCTATGAGCCTATGACTCTTTTA 59.449 38.462 0.00 0.00 43.77 1.52
1776 1838 3.382832 CTCCTCGACGGCCACCTT 61.383 66.667 2.24 0.00 0.00 3.50
1920 1982 1.128188 GGAAGGGCTCCATCCGGTAT 61.128 60.000 0.00 0.00 44.67 2.73
2100 2162 3.679980 CCATGAAGAACGTCAACTACCTG 59.320 47.826 0.00 0.00 0.00 4.00
2481 2543 6.169419 CTGTCAAAGCTGATCGATTGTTTA 57.831 37.500 0.00 0.00 33.05 2.01
2502 2564 2.401583 TGGAACAAGATAGCATGCGT 57.598 45.000 13.01 5.03 31.92 5.24
2530 2592 1.948145 TCGTTGCGTTTGGTTGGTTAT 59.052 42.857 0.00 0.00 0.00 1.89
2531 2593 3.136763 TCGTTGCGTTTGGTTGGTTATA 58.863 40.909 0.00 0.00 0.00 0.98
2532 2594 3.562973 TCGTTGCGTTTGGTTGGTTATAA 59.437 39.130 0.00 0.00 0.00 0.98
2533 2595 4.215827 TCGTTGCGTTTGGTTGGTTATAAT 59.784 37.500 0.00 0.00 0.00 1.28
2534 2596 4.918583 CGTTGCGTTTGGTTGGTTATAATT 59.081 37.500 0.00 0.00 0.00 1.40
2536 2598 4.810790 TGCGTTTGGTTGGTTATAATTGG 58.189 39.130 0.00 0.00 0.00 3.16
2538 2600 5.475909 TGCGTTTGGTTGGTTATAATTGGTA 59.524 36.000 0.00 0.00 0.00 3.25
2644 2724 1.327460 CGCCGTTCCATACAAGTGATG 59.673 52.381 0.00 0.00 0.00 3.07
2647 2727 2.746904 CCGTTCCATACAAGTGATGCAA 59.253 45.455 0.00 0.00 0.00 4.08
2658 2738 0.259938 GTGATGCAAGGGAGGGGAAT 59.740 55.000 0.00 0.00 0.00 3.01
2662 2742 1.755783 GCAAGGGAGGGGAATGCTG 60.756 63.158 0.00 0.00 34.29 4.41
2737 2821 3.401243 GAGCCGAGCCGCAATTTGG 62.401 63.158 0.00 0.00 0.00 3.28
2848 2938 1.706287 GATCTTGGGTCTTTCGCGGC 61.706 60.000 6.13 0.00 0.00 6.53
2855 2946 1.582610 GGTCTTTCGCGGCATTGGAA 61.583 55.000 6.13 0.00 0.00 3.53
2865 2956 2.478539 GCGGCATTGGAAGAGAAATGAC 60.479 50.000 0.00 0.00 38.26 3.06
2872 2970 6.127925 GCATTGGAAGAGAAATGACACACATA 60.128 38.462 0.00 0.00 38.38 2.29
3057 3176 2.822255 GGCGCGGTAGATTTGGCA 60.822 61.111 8.83 0.00 0.00 4.92
3117 3240 2.967076 CGCACAGAACAGCCACGT 60.967 61.111 0.00 0.00 0.00 4.49
3133 3256 4.154347 GTGCCCTCCTCCTCGCTG 62.154 72.222 0.00 0.00 0.00 5.18
3157 3280 3.112075 CGCTTCGCCGCTTTCTGA 61.112 61.111 0.00 0.00 0.00 3.27
3178 3301 4.408821 ACCATCGCGCCACCATGT 62.409 61.111 0.00 0.00 0.00 3.21
3210 3333 2.668550 GGTGCTTCGGGCTTTCGT 60.669 61.111 3.33 0.00 42.39 3.85
3366 3489 1.265095 CCCCGATCGCAGATGAATTTG 59.735 52.381 10.32 0.00 45.12 2.32
3435 3558 1.067669 CGTCTCATCACGGACATGGAT 59.932 52.381 0.00 0.00 36.07 3.41
3447 3570 1.227645 CATGGATCGTGCCGACCAT 60.228 57.895 17.35 17.35 43.09 3.55
3537 3663 3.432588 CCAGAGGACGTCGACGCT 61.433 66.667 35.92 25.81 44.43 5.07
3641 3767 2.178521 GTGCGACATCGTCTCCGT 59.821 61.111 2.85 0.00 42.22 4.69
3642 3768 1.022982 AGTGCGACATCGTCTCCGTA 61.023 55.000 2.85 0.00 42.22 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.916983 TTCTGTAGCATTTGCACTGTTT 57.083 36.364 5.20 0.00 45.16 2.83
2 3 3.004734 GGTTTCTGTAGCATTTGCACTGT 59.995 43.478 5.20 0.00 45.16 3.55
4 5 2.226437 CGGTTTCTGTAGCATTTGCACT 59.774 45.455 5.20 0.00 45.16 4.40
7 8 3.552604 TTCGGTTTCTGTAGCATTTGC 57.447 42.857 0.00 0.00 42.49 3.68
8 9 4.854399 TGTTTCGGTTTCTGTAGCATTTG 58.146 39.130 0.00 0.00 0.00 2.32
9 10 4.578928 ACTGTTTCGGTTTCTGTAGCATTT 59.421 37.500 0.00 0.00 0.00 2.32
10 11 4.134563 ACTGTTTCGGTTTCTGTAGCATT 58.865 39.130 0.00 0.00 0.00 3.56
11 12 3.740115 ACTGTTTCGGTTTCTGTAGCAT 58.260 40.909 0.00 0.00 0.00 3.79
12 13 3.188159 ACTGTTTCGGTTTCTGTAGCA 57.812 42.857 0.00 0.00 0.00 3.49
13 14 7.254353 GGAATATACTGTTTCGGTTTCTGTAGC 60.254 40.741 0.00 0.00 0.00 3.58
14 15 7.043590 CGGAATATACTGTTTCGGTTTCTGTAG 60.044 40.741 0.00 0.00 0.00 2.74
15 16 6.753279 CGGAATATACTGTTTCGGTTTCTGTA 59.247 38.462 0.00 0.00 0.00 2.74
16 17 5.579511 CGGAATATACTGTTTCGGTTTCTGT 59.420 40.000 0.00 0.00 0.00 3.41
17 18 5.501897 GCGGAATATACTGTTTCGGTTTCTG 60.502 44.000 0.00 0.00 0.00 3.02
18 19 4.569564 GCGGAATATACTGTTTCGGTTTCT 59.430 41.667 0.00 0.00 0.00 2.52
19 20 4.569564 AGCGGAATATACTGTTTCGGTTTC 59.430 41.667 0.00 0.00 0.00 2.78
20 21 4.510571 AGCGGAATATACTGTTTCGGTTT 58.489 39.130 0.00 0.00 0.00 3.27
21 22 4.133013 AGCGGAATATACTGTTTCGGTT 57.867 40.909 0.00 0.00 0.00 4.44
22 23 3.814005 AGCGGAATATACTGTTTCGGT 57.186 42.857 0.00 0.00 0.00 4.69
23 24 4.613944 TGTAGCGGAATATACTGTTTCGG 58.386 43.478 0.00 0.00 0.00 4.30
24 25 5.279384 ACTGTAGCGGAATATACTGTTTCG 58.721 41.667 0.00 0.00 32.23 3.46
25 26 7.148787 GCATACTGTAGCGGAATATACTGTTTC 60.149 40.741 0.00 0.00 36.11 2.78
26 27 6.645415 GCATACTGTAGCGGAATATACTGTTT 59.355 38.462 0.00 0.00 36.11 2.83
27 28 6.157211 GCATACTGTAGCGGAATATACTGTT 58.843 40.000 0.00 0.00 36.11 3.16
28 29 5.243060 TGCATACTGTAGCGGAATATACTGT 59.757 40.000 0.00 0.00 37.66 3.55
29 30 5.709966 TGCATACTGTAGCGGAATATACTG 58.290 41.667 0.00 0.00 0.00 2.74
30 31 5.977489 TGCATACTGTAGCGGAATATACT 57.023 39.130 0.00 0.00 0.00 2.12
31 32 6.422701 TGTTTGCATACTGTAGCGGAATATAC 59.577 38.462 8.78 0.00 0.00 1.47
32 33 6.517605 TGTTTGCATACTGTAGCGGAATATA 58.482 36.000 8.78 0.00 0.00 0.86
33 34 5.364778 TGTTTGCATACTGTAGCGGAATAT 58.635 37.500 8.78 0.00 0.00 1.28
34 35 4.760878 TGTTTGCATACTGTAGCGGAATA 58.239 39.130 8.78 0.00 0.00 1.75
35 36 3.605634 TGTTTGCATACTGTAGCGGAAT 58.394 40.909 8.78 0.00 0.00 3.01
36 37 3.000041 CTGTTTGCATACTGTAGCGGAA 59.000 45.455 8.78 0.00 0.00 4.30
37 38 2.028476 ACTGTTTGCATACTGTAGCGGA 60.028 45.455 16.10 0.00 0.00 5.54
38 39 2.346803 ACTGTTTGCATACTGTAGCGG 58.653 47.619 16.10 0.00 0.00 5.52
39 40 5.718649 ATTACTGTTTGCATACTGTAGCG 57.281 39.130 20.31 2.96 35.03 4.26
40 41 6.487103 GGAATTACTGTTTGCATACTGTAGC 58.513 40.000 20.31 15.43 35.03 3.58
41 42 6.238103 CCGGAATTACTGTTTGCATACTGTAG 60.238 42.308 20.31 12.27 35.03 2.74
42 43 5.583061 CCGGAATTACTGTTTGCATACTGTA 59.417 40.000 18.41 18.41 33.15 2.74
43 44 4.394920 CCGGAATTACTGTTTGCATACTGT 59.605 41.667 20.11 20.11 34.96 3.55
44 45 4.730613 GCCGGAATTACTGTTTGCATACTG 60.731 45.833 5.05 11.61 0.00 2.74
45 46 3.377172 GCCGGAATTACTGTTTGCATACT 59.623 43.478 5.05 0.00 0.00 2.12
46 47 3.377172 AGCCGGAATTACTGTTTGCATAC 59.623 43.478 5.05 0.00 0.00 2.39
47 48 3.616219 AGCCGGAATTACTGTTTGCATA 58.384 40.909 5.05 0.00 0.00 3.14
48 49 2.446435 AGCCGGAATTACTGTTTGCAT 58.554 42.857 5.05 0.00 0.00 3.96
49 50 1.904287 AGCCGGAATTACTGTTTGCA 58.096 45.000 5.05 0.00 0.00 4.08
50 51 2.745281 TGTAGCCGGAATTACTGTTTGC 59.255 45.455 5.05 0.00 0.00 3.68
51 52 4.000988 ACTGTAGCCGGAATTACTGTTTG 58.999 43.478 5.05 0.00 30.76 2.93
52 53 4.281898 ACTGTAGCCGGAATTACTGTTT 57.718 40.909 5.05 0.00 30.76 2.83
53 54 3.975168 ACTGTAGCCGGAATTACTGTT 57.025 42.857 5.05 0.00 30.76 3.16
54 55 3.259876 TGAACTGTAGCCGGAATTACTGT 59.740 43.478 5.05 11.37 34.66 3.55
55 56 3.857052 TGAACTGTAGCCGGAATTACTG 58.143 45.455 5.05 10.72 0.00 2.74
56 57 4.443034 GGATGAACTGTAGCCGGAATTACT 60.443 45.833 5.05 0.00 0.00 2.24
57 58 3.808174 GGATGAACTGTAGCCGGAATTAC 59.192 47.826 5.05 4.84 0.00 1.89
58 59 3.709653 AGGATGAACTGTAGCCGGAATTA 59.290 43.478 5.05 0.00 0.00 1.40
59 60 2.505819 AGGATGAACTGTAGCCGGAATT 59.494 45.455 5.05 0.00 0.00 2.17
60 61 2.119495 AGGATGAACTGTAGCCGGAAT 58.881 47.619 5.05 0.00 0.00 3.01
61 62 1.207089 CAGGATGAACTGTAGCCGGAA 59.793 52.381 5.05 0.00 39.69 4.30
62 63 0.824109 CAGGATGAACTGTAGCCGGA 59.176 55.000 5.05 0.00 39.69 5.14
63 64 0.811616 GCAGGATGAACTGTAGCCGG 60.812 60.000 0.00 0.00 39.69 6.13
64 65 0.811616 GGCAGGATGAACTGTAGCCG 60.812 60.000 0.00 0.00 39.69 5.52
65 66 0.811616 CGGCAGGATGAACTGTAGCC 60.812 60.000 0.00 0.00 39.69 3.93
66 67 0.108138 ACGGCAGGATGAACTGTAGC 60.108 55.000 0.00 0.00 39.69 3.58
67 68 1.645034 CACGGCAGGATGAACTGTAG 58.355 55.000 0.00 0.00 39.69 2.74
68 69 0.391130 GCACGGCAGGATGAACTGTA 60.391 55.000 0.00 0.00 39.69 2.74
69 70 1.672356 GCACGGCAGGATGAACTGT 60.672 57.895 0.00 0.00 39.69 3.55
70 71 2.401766 GGCACGGCAGGATGAACTG 61.402 63.158 0.00 0.00 39.69 3.16
71 72 2.045926 GGCACGGCAGGATGAACT 60.046 61.111 0.00 0.00 39.69 3.01
72 73 1.648467 GAAGGCACGGCAGGATGAAC 61.648 60.000 0.00 0.00 39.69 3.18
73 74 1.377202 GAAGGCACGGCAGGATGAA 60.377 57.895 0.00 0.00 39.69 2.57
74 75 2.268920 GAAGGCACGGCAGGATGA 59.731 61.111 0.00 0.00 39.69 2.92
75 76 2.110967 CAGAAGGCACGGCAGGATG 61.111 63.158 0.00 0.00 40.87 3.51
76 77 1.264749 TACAGAAGGCACGGCAGGAT 61.265 55.000 0.00 0.00 0.00 3.24
77 78 1.264749 ATACAGAAGGCACGGCAGGA 61.265 55.000 0.00 0.00 0.00 3.86
78 79 0.392998 AATACAGAAGGCACGGCAGG 60.393 55.000 0.00 0.00 0.00 4.85
79 80 1.453155 AAATACAGAAGGCACGGCAG 58.547 50.000 0.00 0.00 0.00 4.85
80 81 2.289756 TGTAAATACAGAAGGCACGGCA 60.290 45.455 0.00 0.00 0.00 5.69
81 82 2.095372 GTGTAAATACAGAAGGCACGGC 59.905 50.000 0.00 0.00 36.78 5.68
82 83 3.370978 CAGTGTAAATACAGAAGGCACGG 59.629 47.826 0.00 0.00 36.78 4.94
83 84 3.994392 ACAGTGTAAATACAGAAGGCACG 59.006 43.478 0.00 0.00 36.78 5.34
84 85 4.392138 GGACAGTGTAAATACAGAAGGCAC 59.608 45.833 0.00 0.00 36.78 5.01
85 86 4.564821 GGGACAGTGTAAATACAGAAGGCA 60.565 45.833 0.00 0.00 36.78 4.75
86 87 3.939592 GGGACAGTGTAAATACAGAAGGC 59.060 47.826 0.00 0.00 36.78 4.35
87 88 4.181578 CGGGACAGTGTAAATACAGAAGG 58.818 47.826 0.00 0.00 36.78 3.46
88 89 4.181578 CCGGGACAGTGTAAATACAGAAG 58.818 47.826 0.00 0.00 36.78 2.85
89 90 3.055675 CCCGGGACAGTGTAAATACAGAA 60.056 47.826 18.48 0.00 36.78 3.02
90 91 2.498481 CCCGGGACAGTGTAAATACAGA 59.502 50.000 18.48 0.00 36.78 3.41
91 92 2.498481 TCCCGGGACAGTGTAAATACAG 59.502 50.000 22.63 0.00 36.78 2.74
92 93 2.538222 TCCCGGGACAGTGTAAATACA 58.462 47.619 22.63 0.00 0.00 2.29
93 94 3.832615 ATCCCGGGACAGTGTAAATAC 57.167 47.619 29.69 0.00 0.00 1.89
94 95 4.342951 CAGTATCCCGGGACAGTGTAAATA 59.657 45.833 29.69 8.12 0.00 1.40
95 96 3.134081 CAGTATCCCGGGACAGTGTAAAT 59.866 47.826 29.69 9.34 0.00 1.40
96 97 2.498481 CAGTATCCCGGGACAGTGTAAA 59.502 50.000 29.69 0.00 0.00 2.01
97 98 2.104967 CAGTATCCCGGGACAGTGTAA 58.895 52.381 29.69 0.00 0.00 2.41
98 99 1.006281 ACAGTATCCCGGGACAGTGTA 59.994 52.381 35.78 17.96 33.93 2.90
99 100 0.252103 ACAGTATCCCGGGACAGTGT 60.252 55.000 32.45 32.45 31.15 3.55
100 101 1.681793 CTACAGTATCCCGGGACAGTG 59.318 57.143 31.10 31.10 0.00 3.66
101 102 2.027949 GCTACAGTATCCCGGGACAGT 61.028 57.143 29.69 22.96 0.00 3.55
102 103 0.674534 GCTACAGTATCCCGGGACAG 59.325 60.000 29.69 18.21 0.00 3.51
103 104 0.032912 TGCTACAGTATCCCGGGACA 60.033 55.000 29.69 13.36 0.00 4.02
104 105 1.272769 GATGCTACAGTATCCCGGGAC 59.727 57.143 29.69 15.88 32.06 4.46
105 106 1.629043 GATGCTACAGTATCCCGGGA 58.371 55.000 29.18 29.18 32.06 5.14
111 112 1.337260 CGGCAGGGATGCTACAGTATC 60.337 57.143 0.00 0.00 36.58 2.24
112 113 0.681733 CGGCAGGGATGCTACAGTAT 59.318 55.000 0.00 0.00 34.73 2.12
113 114 0.686441 ACGGCAGGGATGCTACAGTA 60.686 55.000 0.00 0.00 34.73 2.74
114 115 1.990060 ACGGCAGGGATGCTACAGT 60.990 57.895 0.00 0.00 34.73 3.55
115 116 1.522355 CACGGCAGGGATGCTACAG 60.522 63.158 0.00 0.00 34.73 2.74
116 117 2.584064 CACGGCAGGGATGCTACA 59.416 61.111 0.00 0.00 34.73 2.74
117 118 2.897350 GCACGGCAGGGATGCTAC 60.897 66.667 0.00 0.00 36.40 3.58
118 119 4.175337 GGCACGGCAGGGATGCTA 62.175 66.667 0.00 0.00 39.38 3.49
136 137 2.103143 CTCCTCTACCGTGCAGCG 59.897 66.667 0.00 0.00 40.95 5.18
137 138 2.496817 CCTCCTCTACCGTGCAGC 59.503 66.667 0.00 0.00 0.00 5.25
138 139 2.496817 GCCTCCTCTACCGTGCAG 59.503 66.667 0.00 0.00 0.00 4.41
139 140 3.449227 CGCCTCCTCTACCGTGCA 61.449 66.667 0.00 0.00 0.00 4.57
140 141 2.885774 GAACGCCTCCTCTACCGTGC 62.886 65.000 0.00 0.00 33.78 5.34
141 142 1.139095 GAACGCCTCCTCTACCGTG 59.861 63.158 0.00 0.00 33.78 4.94
142 143 2.050934 GGAACGCCTCCTCTACCGT 61.051 63.158 0.00 0.00 41.61 4.83
143 144 2.806237 GGAACGCCTCCTCTACCG 59.194 66.667 0.00 0.00 41.61 4.02
149 150 8.594350 ATACTAGTAGTAACGGAACGCCTCCT 62.594 46.154 13.92 0.00 44.49 3.69
150 151 6.486060 ATACTAGTAGTAACGGAACGCCTCC 61.486 48.000 13.92 0.00 44.49 4.30
151 152 4.513318 ATACTAGTAGTAACGGAACGCCTC 59.487 45.833 13.92 0.00 44.49 4.70
152 153 4.274459 CATACTAGTAGTAACGGAACGCCT 59.726 45.833 13.92 0.00 44.49 5.52
153 154 4.273480 TCATACTAGTAGTAACGGAACGCC 59.727 45.833 13.92 0.00 44.49 5.68
154 155 5.007136 ACTCATACTAGTAGTAACGGAACGC 59.993 44.000 13.92 0.00 44.49 4.84
155 156 6.595772 ACTCATACTAGTAGTAACGGAACG 57.404 41.667 13.92 4.97 45.54 3.95
156 157 7.495934 TGGTACTCATACTAGTAGTAACGGAAC 59.504 40.741 13.92 9.64 36.42 3.62
157 158 7.564793 TGGTACTCATACTAGTAGTAACGGAA 58.435 38.462 13.92 0.00 36.42 4.30
158 159 7.124573 TGGTACTCATACTAGTAGTAACGGA 57.875 40.000 13.92 10.70 36.42 4.69
159 160 7.658982 TGATGGTACTCATACTAGTAGTAACGG 59.341 40.741 13.92 9.03 36.42 4.44
160 161 8.494347 GTGATGGTACTCATACTAGTAGTAACG 58.506 40.741 13.92 8.60 36.42 3.18
161 162 9.334947 TGTGATGGTACTCATACTAGTAGTAAC 57.665 37.037 13.92 11.05 33.89 2.50
162 163 9.334947 GTGTGATGGTACTCATACTAGTAGTAA 57.665 37.037 13.92 0.00 33.89 2.24
163 164 8.488668 TGTGTGATGGTACTCATACTAGTAGTA 58.511 37.037 12.38 12.38 37.92 1.82
164 165 7.344134 TGTGTGATGGTACTCATACTAGTAGT 58.656 38.462 8.85 8.14 37.92 2.73
165 166 7.803279 TGTGTGATGGTACTCATACTAGTAG 57.197 40.000 8.85 0.00 37.92 2.57
167 168 8.797438 CATATGTGTGATGGTACTCATACTAGT 58.203 37.037 11.52 0.00 38.84 2.57
168 169 9.014297 TCATATGTGTGATGGTACTCATACTAG 57.986 37.037 11.52 0.00 38.84 2.57
169 170 8.934023 TCATATGTGTGATGGTACTCATACTA 57.066 34.615 11.52 4.65 38.84 1.82
170 171 7.839680 TCATATGTGTGATGGTACTCATACT 57.160 36.000 11.52 3.11 38.84 2.12
171 172 7.600375 CCTTCATATGTGTGATGGTACTCATAC 59.400 40.741 1.90 5.40 38.84 2.39
172 173 7.670364 CCTTCATATGTGTGATGGTACTCATA 58.330 38.462 1.90 0.00 39.73 2.15
173 174 6.528321 CCTTCATATGTGTGATGGTACTCAT 58.472 40.000 1.90 0.00 38.16 2.90
174 175 5.684813 GCCTTCATATGTGTGATGGTACTCA 60.685 44.000 1.90 0.00 42.43 3.41
175 176 4.752101 GCCTTCATATGTGTGATGGTACTC 59.248 45.833 1.90 0.00 42.43 2.59
176 177 4.164030 TGCCTTCATATGTGTGATGGTACT 59.836 41.667 1.90 0.00 42.43 2.73
177 178 4.450976 TGCCTTCATATGTGTGATGGTAC 58.549 43.478 1.90 0.00 42.43 3.34
178 179 4.769345 TGCCTTCATATGTGTGATGGTA 57.231 40.909 1.90 6.12 42.43 3.25
179 180 3.650281 TGCCTTCATATGTGTGATGGT 57.350 42.857 1.90 0.00 42.43 3.55
180 181 4.987408 TTTGCCTTCATATGTGTGATGG 57.013 40.909 1.90 7.15 43.00 3.51
181 182 6.254804 CACATTTTGCCTTCATATGTGTGATG 59.745 38.462 10.26 5.37 38.91 3.07
182 183 6.071221 ACACATTTTGCCTTCATATGTGTGAT 60.071 34.615 18.61 5.84 46.00 3.06
183 184 5.243507 ACACATTTTGCCTTCATATGTGTGA 59.756 36.000 18.61 0.00 46.00 3.58
184 185 5.472148 ACACATTTTGCCTTCATATGTGTG 58.528 37.500 15.82 12.95 46.00 3.82
185 186 5.726980 ACACATTTTGCCTTCATATGTGT 57.273 34.783 12.02 12.02 44.69 3.72
186 187 5.957798 AGACACATTTTGCCTTCATATGTG 58.042 37.500 10.89 10.89 43.61 3.21
187 188 7.886629 ATAGACACATTTTGCCTTCATATGT 57.113 32.000 1.90 0.00 31.88 2.29
188 189 8.019669 GCTATAGACACATTTTGCCTTCATATG 58.980 37.037 3.21 0.00 0.00 1.78
189 190 7.175641 GGCTATAGACACATTTTGCCTTCATAT 59.824 37.037 3.21 0.00 36.52 1.78
190 191 6.486657 GGCTATAGACACATTTTGCCTTCATA 59.513 38.462 3.21 0.00 36.52 2.15
191 192 5.300286 GGCTATAGACACATTTTGCCTTCAT 59.700 40.000 3.21 0.00 36.52 2.57
192 193 4.640201 GGCTATAGACACATTTTGCCTTCA 59.360 41.667 3.21 0.00 36.52 3.02
193 194 4.884164 AGGCTATAGACACATTTTGCCTTC 59.116 41.667 8.68 0.00 46.04 3.46
194 195 4.860022 AGGCTATAGACACATTTTGCCTT 58.140 39.130 8.68 0.00 46.04 4.35
195 196 4.510167 AGGCTATAGACACATTTTGCCT 57.490 40.909 8.68 0.00 43.81 4.75
196 197 6.884280 ATTAGGCTATAGACACATTTTGCC 57.116 37.500 8.68 0.00 39.40 4.52
210 211 9.533831 CATGGAACCCTTTATTTATTAGGCTAT 57.466 33.333 0.00 0.00 0.00 2.97
211 212 8.507761 ACATGGAACCCTTTATTTATTAGGCTA 58.492 33.333 0.00 0.00 0.00 3.93
212 213 7.362234 ACATGGAACCCTTTATTTATTAGGCT 58.638 34.615 0.00 0.00 0.00 4.58
213 214 7.597288 ACATGGAACCCTTTATTTATTAGGC 57.403 36.000 0.00 0.00 0.00 3.93
218 219 9.707957 TGTGATAACATGGAACCCTTTATTTAT 57.292 29.630 0.00 0.00 0.00 1.40
219 220 8.962679 GTGTGATAACATGGAACCCTTTATTTA 58.037 33.333 0.00 0.00 0.00 1.40
220 221 7.453126 TGTGTGATAACATGGAACCCTTTATTT 59.547 33.333 0.00 0.00 0.00 1.40
221 222 6.951198 TGTGTGATAACATGGAACCCTTTATT 59.049 34.615 0.00 0.00 0.00 1.40
222 223 6.489603 TGTGTGATAACATGGAACCCTTTAT 58.510 36.000 0.00 0.00 0.00 1.40
223 224 5.882040 TGTGTGATAACATGGAACCCTTTA 58.118 37.500 0.00 0.00 0.00 1.85
224 225 4.735369 TGTGTGATAACATGGAACCCTTT 58.265 39.130 0.00 0.00 0.00 3.11
225 226 4.380843 TGTGTGATAACATGGAACCCTT 57.619 40.909 0.00 0.00 0.00 3.95
226 227 4.591321 ATGTGTGATAACATGGAACCCT 57.409 40.909 0.00 0.00 39.32 4.34
227 228 5.827797 ACATATGTGTGATAACATGGAACCC 59.172 40.000 7.78 0.00 40.93 4.11
228 229 6.942532 ACATATGTGTGATAACATGGAACC 57.057 37.500 7.78 0.00 40.93 3.62
229 230 9.109393 AGTAACATATGTGTGATAACATGGAAC 57.891 33.333 9.63 0.00 40.93 3.62
230 231 9.325198 GAGTAACATATGTGTGATAACATGGAA 57.675 33.333 9.63 0.00 40.93 3.53
231 232 7.931407 GGAGTAACATATGTGTGATAACATGGA 59.069 37.037 9.63 0.00 40.93 3.41
232 233 7.173218 GGGAGTAACATATGTGTGATAACATGG 59.827 40.741 9.63 0.00 40.93 3.66
233 234 7.173218 GGGGAGTAACATATGTGTGATAACATG 59.827 40.741 9.63 0.00 40.93 3.21
234 235 7.147391 TGGGGAGTAACATATGTGTGATAACAT 60.147 37.037 9.63 0.00 43.21 2.71
235 236 6.157123 TGGGGAGTAACATATGTGTGATAACA 59.843 38.462 9.63 2.24 38.92 2.41
236 237 6.482308 GTGGGGAGTAACATATGTGTGATAAC 59.518 42.308 9.63 1.91 38.92 1.89
237 238 6.385759 AGTGGGGAGTAACATATGTGTGATAA 59.614 38.462 9.63 0.00 38.92 1.75
238 239 5.903010 AGTGGGGAGTAACATATGTGTGATA 59.097 40.000 9.63 0.00 38.92 2.15
239 240 4.721776 AGTGGGGAGTAACATATGTGTGAT 59.278 41.667 9.63 0.00 38.92 3.06
240 241 4.101114 AGTGGGGAGTAACATATGTGTGA 58.899 43.478 9.63 0.00 38.92 3.58
241 242 4.487714 AGTGGGGAGTAACATATGTGTG 57.512 45.455 9.63 0.00 38.92 3.82
242 243 7.302948 TCTATAGTGGGGAGTAACATATGTGT 58.697 38.462 9.63 2.63 41.28 3.72
243 244 7.670140 TCTCTATAGTGGGGAGTAACATATGTG 59.330 40.741 9.63 0.00 0.00 3.21
244 245 7.766628 TCTCTATAGTGGGGAGTAACATATGT 58.233 38.462 1.41 1.41 0.00 2.29
245 246 8.830915 ATCTCTATAGTGGGGAGTAACATATG 57.169 38.462 0.00 0.00 0.00 1.78
247 248 9.125255 ACTATCTCTATAGTGGGGAGTAACATA 57.875 37.037 0.00 0.00 45.34 2.29
248 249 8.002431 ACTATCTCTATAGTGGGGAGTAACAT 57.998 38.462 0.00 0.00 45.34 2.71
249 250 7.403837 ACTATCTCTATAGTGGGGAGTAACA 57.596 40.000 0.00 0.00 45.34 2.41
250 251 9.230122 GTTACTATCTCTATAGTGGGGAGTAAC 57.770 40.741 21.95 21.95 46.28 2.50
251 252 8.099537 CGTTACTATCTCTATAGTGGGGAGTAA 58.900 40.741 8.04 13.88 46.28 2.24
252 253 7.236432 ACGTTACTATCTCTATAGTGGGGAGTA 59.764 40.741 8.04 4.08 46.28 2.59
253 254 6.044171 ACGTTACTATCTCTATAGTGGGGAGT 59.956 42.308 8.04 4.92 46.28 3.85
254 255 6.474630 ACGTTACTATCTCTATAGTGGGGAG 58.525 44.000 8.04 0.00 46.28 4.30
255 256 6.445451 ACGTTACTATCTCTATAGTGGGGA 57.555 41.667 8.04 0.00 46.28 4.81
256 257 7.548780 GTCTACGTTACTATCTCTATAGTGGGG 59.451 44.444 0.00 1.02 46.28 4.96
257 258 8.313292 AGTCTACGTTACTATCTCTATAGTGGG 58.687 40.741 0.00 1.30 46.28 4.61
270 271 9.112725 TGCTCATGTTATTAGTCTACGTTACTA 57.887 33.333 0.00 0.00 0.00 1.82
271 272 7.993101 TGCTCATGTTATTAGTCTACGTTACT 58.007 34.615 0.00 0.02 0.00 2.24
272 273 8.691727 CATGCTCATGTTATTAGTCTACGTTAC 58.308 37.037 0.00 0.00 34.23 2.50
273 274 8.797266 CATGCTCATGTTATTAGTCTACGTTA 57.203 34.615 0.00 0.00 34.23 3.18
274 275 7.700322 CATGCTCATGTTATTAGTCTACGTT 57.300 36.000 0.00 0.00 34.23 3.99
289 290 5.363101 ACATGGACTAGTAACATGCTCATG 58.637 41.667 27.35 17.70 44.32 3.07
290 291 5.620738 ACATGGACTAGTAACATGCTCAT 57.379 39.130 27.35 13.76 44.32 2.90
291 292 5.420725 AACATGGACTAGTAACATGCTCA 57.579 39.130 27.35 6.90 44.32 4.26
292 293 6.574350 AGTAACATGGACTAGTAACATGCTC 58.426 40.000 27.35 20.35 44.32 4.26
293 294 6.546428 AGTAACATGGACTAGTAACATGCT 57.454 37.500 27.35 21.68 44.32 3.79
294 295 6.700520 GGTAGTAACATGGACTAGTAACATGC 59.299 42.308 27.35 17.32 44.32 4.06
295 296 7.147794 TGGGTAGTAACATGGACTAGTAACATG 60.148 40.741 26.45 26.45 45.56 3.21
296 297 6.899075 TGGGTAGTAACATGGACTAGTAACAT 59.101 38.462 9.37 0.54 30.08 2.71
297 298 6.255287 TGGGTAGTAACATGGACTAGTAACA 58.745 40.000 9.37 0.00 30.08 2.41
298 299 6.780457 TGGGTAGTAACATGGACTAGTAAC 57.220 41.667 9.37 0.00 30.08 2.50
299 300 7.400915 ACAATGGGTAGTAACATGGACTAGTAA 59.599 37.037 9.37 0.00 30.08 2.24
300 301 6.899075 ACAATGGGTAGTAACATGGACTAGTA 59.101 38.462 9.37 1.87 30.08 1.82
301 302 5.724854 ACAATGGGTAGTAACATGGACTAGT 59.275 40.000 9.37 0.00 30.08 2.57
302 303 6.049149 CACAATGGGTAGTAACATGGACTAG 58.951 44.000 9.37 0.00 30.08 2.57
303 304 5.104693 CCACAATGGGTAGTAACATGGACTA 60.105 44.000 0.00 1.43 32.67 2.59
304 305 4.324254 CCACAATGGGTAGTAACATGGACT 60.324 45.833 7.58 7.58 32.67 3.85
305 306 3.945285 CCACAATGGGTAGTAACATGGAC 59.055 47.826 0.00 0.00 32.67 4.02
306 307 3.623703 GCCACAATGGGTAGTAACATGGA 60.624 47.826 0.00 0.00 38.19 3.41
307 308 2.687935 GCCACAATGGGTAGTAACATGG 59.312 50.000 0.00 0.00 38.19 3.66
318 319 1.134280 CCTCAGACTAGCCACAATGGG 60.134 57.143 0.00 0.00 38.19 4.00
319 320 1.833630 TCCTCAGACTAGCCACAATGG 59.166 52.381 0.00 0.00 41.55 3.16
320 321 2.158986 CCTCCTCAGACTAGCCACAATG 60.159 54.545 0.00 0.00 0.00 2.82
321 322 2.114616 CCTCCTCAGACTAGCCACAAT 58.885 52.381 0.00 0.00 0.00 2.71
322 323 1.203187 ACCTCCTCAGACTAGCCACAA 60.203 52.381 0.00 0.00 0.00 3.33
323 324 0.409876 ACCTCCTCAGACTAGCCACA 59.590 55.000 0.00 0.00 0.00 4.17
324 325 0.820871 CACCTCCTCAGACTAGCCAC 59.179 60.000 0.00 0.00 0.00 5.01
325 326 0.324738 CCACCTCCTCAGACTAGCCA 60.325 60.000 0.00 0.00 0.00 4.75
326 327 0.324830 ACCACCTCCTCAGACTAGCC 60.325 60.000 0.00 0.00 0.00 3.93
327 328 1.562783 AACCACCTCCTCAGACTAGC 58.437 55.000 0.00 0.00 0.00 3.42
328 329 2.498078 GGAAACCACCTCCTCAGACTAG 59.502 54.545 0.00 0.00 0.00 2.57
329 330 2.158219 TGGAAACCACCTCCTCAGACTA 60.158 50.000 0.00 0.00 33.77 2.59
330 331 1.353091 GGAAACCACCTCCTCAGACT 58.647 55.000 0.00 0.00 0.00 3.24
331 332 1.056660 TGGAAACCACCTCCTCAGAC 58.943 55.000 0.00 0.00 33.77 3.51
332 333 1.699634 CTTGGAAACCACCTCCTCAGA 59.300 52.381 0.00 0.00 33.77 3.27
340 341 2.507407 TGATAGGCTTGGAAACCACC 57.493 50.000 0.00 0.00 30.78 4.61
341 342 4.335594 GTGTATGATAGGCTTGGAAACCAC 59.664 45.833 0.00 0.00 30.78 4.16
351 352 3.097614 GGATACGGGTGTATGATAGGCT 58.902 50.000 0.00 0.00 41.37 4.58
404 408 0.035056 ATGGGAGCAACTGTACTGGC 60.035 55.000 4.66 0.00 0.00 4.85
467 480 2.943653 GGCGTTTCAACCACGAGG 59.056 61.111 0.00 0.00 40.20 4.63
472 485 1.374378 TATCGCGGCGTTTCAACCA 60.374 52.632 22.90 0.00 0.00 3.67
476 489 0.738063 ATGTGTATCGCGGCGTTTCA 60.738 50.000 22.90 14.98 0.00 2.69
507 520 3.770040 CCCACTCGCCATCGGACA 61.770 66.667 0.00 0.00 36.13 4.02
534 548 2.188994 GCTGCCGGAAGAGAGCAT 59.811 61.111 15.89 0.00 35.64 3.79
537 551 2.103934 CTCGCTGCCGGAAGAGAG 59.896 66.667 26.64 26.64 37.69 3.20
603 617 3.375610 TCGGTCAGATCTTCTCTTTCTCG 59.624 47.826 0.00 0.00 29.16 4.04
750 788 2.507324 GAGAGGGAGCGCGACAAC 60.507 66.667 12.10 0.00 0.00 3.32
763 801 1.374758 GGCAACGTGGGAGTGAGAG 60.375 63.158 0.00 0.00 0.00 3.20
925 985 4.040936 AGTAGAAGAGAGTGGCAGAAGA 57.959 45.455 0.00 0.00 0.00 2.87
926 986 4.799564 AAGTAGAAGAGAGTGGCAGAAG 57.200 45.455 0.00 0.00 0.00 2.85
927 987 4.800914 GCAAAGTAGAAGAGAGTGGCAGAA 60.801 45.833 0.00 0.00 0.00 3.02
929 989 2.999355 GCAAAGTAGAAGAGAGTGGCAG 59.001 50.000 0.00 0.00 0.00 4.85
930 990 2.289694 GGCAAAGTAGAAGAGAGTGGCA 60.290 50.000 0.00 0.00 0.00 4.92
931 991 2.351455 GGCAAAGTAGAAGAGAGTGGC 58.649 52.381 0.00 0.00 0.00 5.01
932 992 2.028930 ACGGCAAAGTAGAAGAGAGTGG 60.029 50.000 0.00 0.00 0.00 4.00
934 994 2.628657 ACACGGCAAAGTAGAAGAGAGT 59.371 45.455 0.00 0.00 0.00 3.24
936 996 3.321111 AGAACACGGCAAAGTAGAAGAGA 59.679 43.478 0.00 0.00 0.00 3.10
937 997 3.654414 AGAACACGGCAAAGTAGAAGAG 58.346 45.455 0.00 0.00 0.00 2.85
938 998 3.746045 AGAACACGGCAAAGTAGAAGA 57.254 42.857 0.00 0.00 0.00 2.87
979 1039 5.780793 TCATGGTGATCTGATCTGATCTGAT 59.219 40.000 30.92 28.98 46.44 2.90
980 1040 5.145564 TCATGGTGATCTGATCTGATCTGA 58.854 41.667 30.92 25.01 42.30 3.27
981 1041 5.470047 TCATGGTGATCTGATCTGATCTG 57.530 43.478 30.92 23.70 42.30 2.90
1003 1063 1.166531 GCACCTTGAACGTTGGAGCT 61.167 55.000 5.00 0.00 35.20 4.09
1017 1077 2.125512 GATCGGCTCAACGCACCT 60.126 61.111 0.00 0.00 41.67 4.00
1022 1082 0.936764 CAGGATCGATCGGCTCAACG 60.937 60.000 18.81 1.78 0.00 4.10
1054 1114 1.529244 AGCCCAACAACCAGCTCAC 60.529 57.895 0.00 0.00 0.00 3.51
1055 1115 1.529010 CAGCCCAACAACCAGCTCA 60.529 57.895 0.00 0.00 31.93 4.26
1061 1121 1.607467 ATGAGCCAGCCCAACAACC 60.607 57.895 0.00 0.00 0.00 3.77
1082 1142 3.041946 CAGGTAAGCCAGTAGGGAGAAT 58.958 50.000 0.00 0.00 40.01 2.40
1135 1196 0.883833 TTCGTAGACGGGGACTTCAC 59.116 55.000 1.67 0.00 40.29 3.18
1151 1212 0.460109 TCACATCTGCACCCGATTCG 60.460 55.000 0.00 0.00 0.00 3.34
1199 1260 4.895889 TCTAGCTAGATTTGCTTGGCTCTA 59.104 41.667 19.72 0.00 41.46 2.43
1205 1266 6.315891 AGCTTTTCTCTAGCTAGATTTGCTTG 59.684 38.462 23.48 10.37 46.66 4.01
1355 1417 4.019860 TGAAAGGAGAAACAGATCAGGGAG 60.020 45.833 0.00 0.00 0.00 4.30
1361 1423 4.083590 GCACAGTGAAAGGAGAAACAGATC 60.084 45.833 4.15 0.00 0.00 2.75
1432 1494 9.532697 CTGTTTTGCATTTAGATAAATTTGTGC 57.467 29.630 0.00 0.00 33.88 4.57
1440 1502 8.845413 ATTTTGGCTGTTTTGCATTTAGATAA 57.155 26.923 0.00 0.00 34.04 1.75
1468 1530 7.222224 CGACTTAATTGGTCCAACATAGTAGTC 59.778 40.741 6.41 12.02 0.00 2.59
1473 1535 6.986817 AGATCGACTTAATTGGTCCAACATAG 59.013 38.462 6.41 6.78 0.00 2.23
1523 1585 7.148820 GCATATGTTAATCAACGCAAACAAAGT 60.149 33.333 4.29 0.00 37.48 2.66
1776 1838 1.441515 GTGCGTGTCGAGCTCGTAA 60.442 57.895 33.33 20.78 40.80 3.18
1992 2054 1.354506 GTAGTCGGACGGGATGACG 59.645 63.158 1.89 0.00 37.69 4.35
1995 2057 2.025727 GCGTAGTCGGACGGGATG 59.974 66.667 1.89 0.00 43.13 3.51
2100 2162 2.672996 ATGGACAGCACGTTGGGC 60.673 61.111 0.00 0.00 0.00 5.36
2450 2512 2.946762 GCTTTGACAGCGGGTGAC 59.053 61.111 14.98 8.53 39.29 3.67
2460 2522 6.470235 CCAATAAACAATCGATCAGCTTTGAC 59.530 38.462 0.00 0.00 0.00 3.18
2481 2543 3.282021 ACGCATGCTATCTTGTTCCAAT 58.718 40.909 17.13 0.00 0.00 3.16
2491 2553 2.005451 GATCCATGGACGCATGCTATC 58.995 52.381 18.99 12.91 0.00 2.08
2492 2554 1.673923 CGATCCATGGACGCATGCTAT 60.674 52.381 18.99 3.17 0.00 2.97
2494 2556 1.596203 CGATCCATGGACGCATGCT 60.596 57.895 18.99 0.00 0.00 3.79
2502 2564 0.801872 CAAACGCAACGATCCATGGA 59.198 50.000 18.88 18.88 0.00 3.41
2530 2592 3.266636 CCTGCATCACACGTACCAATTA 58.733 45.455 0.00 0.00 0.00 1.40
2531 2593 2.083774 CCTGCATCACACGTACCAATT 58.916 47.619 0.00 0.00 0.00 2.32
2532 2594 1.678728 CCCTGCATCACACGTACCAAT 60.679 52.381 0.00 0.00 0.00 3.16
2533 2595 0.321210 CCCTGCATCACACGTACCAA 60.321 55.000 0.00 0.00 0.00 3.67
2534 2596 1.188871 TCCCTGCATCACACGTACCA 61.189 55.000 0.00 0.00 0.00 3.25
2536 2598 1.359848 CTTCCCTGCATCACACGTAC 58.640 55.000 0.00 0.00 0.00 3.67
2538 2600 1.003355 CCTTCCCTGCATCACACGT 60.003 57.895 0.00 0.00 0.00 4.49
2567 2647 0.529773 GATCGGACAACGCCAGCATA 60.530 55.000 0.00 0.00 43.86 3.14
2577 2657 0.614697 TCCCAGAGCAGATCGGACAA 60.615 55.000 0.00 0.00 0.00 3.18
2644 2724 1.755783 CAGCATTCCCCTCCCTTGC 60.756 63.158 0.00 0.00 0.00 4.01
2647 2727 1.695597 CTCCAGCATTCCCCTCCCT 60.696 63.158 0.00 0.00 0.00 4.20
2658 2738 2.285773 ACACGCCATCTCTCCAGCA 61.286 57.895 0.00 0.00 0.00 4.41
2662 2742 1.153289 ATGCACACGCCATCTCTCC 60.153 57.895 0.00 0.00 37.32 3.71
2694 2778 5.093457 CACACTATCTTGTACACGAACGAT 58.907 41.667 6.11 1.88 0.00 3.73
2699 2783 4.615223 GCTCACACACTATCTTGTACACGA 60.615 45.833 4.33 4.33 0.00 4.35
2737 2821 0.584876 GTGACAAACAGTACGGGCAC 59.415 55.000 0.00 0.00 0.00 5.01
2770 2854 6.439375 ACATACCACAGTTATACAGAACAGGA 59.561 38.462 0.00 0.00 0.00 3.86
2772 2856 7.063426 CACACATACCACAGTTATACAGAACAG 59.937 40.741 0.00 0.00 0.00 3.16
2773 2857 6.871492 CACACATACCACAGTTATACAGAACA 59.129 38.462 0.00 0.00 0.00 3.18
2774 2858 6.872020 ACACACATACCACAGTTATACAGAAC 59.128 38.462 0.00 0.00 0.00 3.01
2775 2859 6.871492 CACACACATACCACAGTTATACAGAA 59.129 38.462 0.00 0.00 0.00 3.02
2776 2860 6.394809 CACACACATACCACAGTTATACAGA 58.605 40.000 0.00 0.00 0.00 3.41
2848 2938 5.694231 TGTGTGTCATTTCTCTTCCAATG 57.306 39.130 0.00 0.00 0.00 2.82
2855 2946 3.262420 GCCGTATGTGTGTCATTTCTCT 58.738 45.455 0.00 0.00 37.91 3.10
2865 2956 4.331137 CGTAAAATTCTGCCGTATGTGTG 58.669 43.478 0.00 0.00 0.00 3.82
2872 2970 1.900245 AACCCGTAAAATTCTGCCGT 58.100 45.000 0.00 0.00 0.00 5.68
3407 3530 4.492160 TGATGAGACGCGGCGGAC 62.492 66.667 27.37 19.10 0.00 4.79
3515 3641 2.989824 CGACGTCCTCTGGGTGGT 60.990 66.667 10.58 0.00 0.00 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.