>input_sequence_46353
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-------------------ATGAGCTCCAACGTTCAAGGTGCGTTGAGCCGATCGATCCTGAGGTTTGCTGCGGTGAGCT
GGTTGTTGGGCTGGCTCATGGA-TTCTCCCTACTGGCTTACCTGATCTTCGATTTGTTTTTGCTGTCAGGTGAGGGTGAA
GTCCCCGTCTACGAATCGGGTGCAGATGTGAGTTCCTTCTCCCCCTCCTCAATTTGTGATAGAGCCAAGCAAATCTAGCT
AGAGAAAAGCTCTTGATCTGCATCGGCCTTTGACGTACTGTGTAGTACATGTCTGACACGCAACTAAAATTGCACGAACT
GCCACCAACTTTTGACGTCGGTATACTTTGTCGGGAG-CTCGCATTATTGATGCCACTCCCTGATCTGTTTCTCCTTTCA
CTGTGCATGATGAGTAGACACACACTATTTATATTTTATTTTGTGGTTTCTTTGCACAAATTTATCTAAATGCAAAACAG
CCAAAATACGACTACTATGTTGGACCAATTAAGTCGATCTCAGCTATGAGCCTATGACTCTTTTACTTTGTTTGCGTTGA
TTAACATATGCTTGCACGATCAAATGATCAATGGCTGTCCATCTCGGCGCGCGTACAGGCCCTGCAGAAGCTGCAAGAGA
AATGGAAGTCCACGGCGGCGCCGTACCCGGCCATGTACTCGAGCTTCTTGGGCGGGATCATCCTGGACCCGGCCATGATG
GCCCTCCCCATCGACGACCACATGGTCCACCGCGGCCACGGCGTCTTCGACACGGCCATGCTCCTCGACGGCCACCTTTA
CGAGCTCGACACGCACCTCGACCGCTTCCTGCGCTCCGCGGCGCAGGCCAAGGTGGGTACCCCGTTCCCGCGCGACACGC
TGCGCAGCATCCTCGTGCAGATGACGGCGGCGTCCGGCTGCCGGAAGGGCTCCATCCGGTATTGGCTCAGCTCCGGCCCC
GGCGACTTCCTGCTCTCCTCCAGCGGCTGCCCCGGCCCGGCCTTCTACGCCGTCGTCATCCCGTCCGACTACGCGCAGTG
CCGCCACGGCGTGCGCGCCGTGACCACGTCGGTGCCCATGAAGCCGCCGCTGTTCGCCACCATGAAGAACGTCAACTACC
TGCCCAACGTGCTGTCCATCATGGACGCGGAGGAGCGCGGCGCGTTCGCGTCCGTGTGGGTGGACGAGCAGGGGTACGTC
GCCGAGGGCCCCATGGTGAACGTCGCCTTCGTCACCCAGGGCGGCGAGCTCGTGCTCCCGGTGTTCGACAAGATCCTCAG
CGGGTGCACCGCCAAGCGGATGCTGGCGCTGGCGCCGAAGCTCGTCGAGGCCGGCCTGCTCAAGGGCGTCAGCACCCAGC
ACATCACCGCCGCCGACGCCAAGCGCTCCGTGGAGATGGCCTTCGTCGGCAGCGGCCTGCCCGTGCTGCCCATCGTCGAG
TGGGACGGCCAGCCCATCGGCGACGGTAAGCGTCACCCGCTGTCAAAGCTGATCGATTGTTTATTGGAACAAGATAGCAT
GCGTCCATGGATCGTTGCGTTTGGTTGGTTATAATTGGTAC--------------GTG----TGATGCAGGGAAGGTGGG
GAAGCTTATGCTGGCGTTGTCCGATCTGCTCTGGGAGGACATGAAGTCCGGGCCGGACAGGGTCGCCGTTCCATACAAGT
GA------------------------------------------------------------------------------
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--------
>chr3A_1_TraesCS3A01G160500
AAACAGTGCAAATGCTACAGAAACCGAAACAGTATATTCCGCTACAGTATGCAAACAGTAATTCCGGCTACAGTTCATCC
TGCCGTGCCTTCTGTATTTACACTGTCCCGGGATACTGTAGCATCCCTGCCGTGCCCGCTGCACGGTAGAGGAGGCGTTC
CGTTACTACTAGTATGAGTACCATCACACATATGAAGGCAAAATGTGTCTATAGCCTAATAAATAAAGGGTTCCATGTTA
TCACACATATGTTACTCCCCACTATAGAGATAGTAACGTAGACTAATAACATGAGCATGTTACTAGTCCATGTTACTACC
CATTGTGGCTAGTCTGAGGAGGTGGTTTCCAAGCCTATCATAC---ACCCGTATCCGCATCCGTATCGCTAATTCGCTAC
GCCGCCTG------CCAGTACAGTTGCTCCCATCCATCCAT---CCATACTCCACGGTAAACGCCGCCACCCGTGCCGTC
CTCGTGGTTGAAACGCCGCGATACACATCCACCGATCCCT-GTCCGATGGCGAGTGGGCCGTCGTTTATGCTCTCTTCCG
GCAGCGAGCGACGGCGAACGCGTCGCACCTCCGGCCATCGCCGTTACCACCGCGTACGAGAAAGAGAAGATCTGACCGAT
CGGCTCCGCAGGGCCGGGCAGTCGGTCGCCACGGCGCTGTCCG------------------------CCCCGGAACAAAC
GCAGAAAACGCGAGGGGATACAACAAGGGCAGGCGGCCCGCGGTGGGGGGCCGCCGGGCCGGCTGAAGTTGTCGCGCTCC
CTCTCA-----CTCCCACGTTGCCCGCCCCTTTGTCCTC-------TACCTATCTTTTCTGTTAGACCATTCGACGCCAC
GTCCGCGCGC----------AGCGAGCAGGCCGGCCGGCCGGCCGATTATAAAACCTCAGTGCGAGCAGGTGCTCCACTC
GCACTGCTACTACACTCGAGCTACTCTTCTGCCACTCTCTTCTACTTTGCCGTGTTCTTCTCTCACGGATCGGATCGGAT
CAGATCAGATCAGATCACCATGAGCTCCAACGTTCAAGGTGCGTTGAGCCGATCGATCCTGAGGTTTGCTGCGGTGAGCT
GGTTGTTGGGCTGGCTCATGGA-TTCTCCCTACTGGCTTACCTGATCTTCGATTTGTTTTTGCTGTCAGGTGAGGGTGAA
GTCCCCGTCTACGAATCGGGTGCAGATGTGAGTTCCTTCTCCCCCTCCTCAATTTGTGATAGAGCCAAGCAAATCTAGCT
AGAGAAAAGCTCTTGATCTGCATCGGCCTTTGACGTACTGTGTAGTACATGTCTGACACGCAACTAAAATTGCACGAACT
GCCACCAACTTTTGACGTCGGTATACTTTGTCGGGAG-CTCGCATTATTGATGCCACTCCCTGATCTGTTTCTCCTTTCA
CTGTGCATGATGAGTAGACACACACTATTTATATTTTATTTTGTGGTTTCTTTGCACAAATTTATCTAAATGCAAAACAG
CCAAAATACGACTACTATGTTGGACCAATTAAGTCGATCTCAGCTATGAGCCTATGACTCTTTTACTTTGTTTGCGTTGA
TTAACATATGCTTGCACGATCAAATGATCAATGGCTGTCCATCTCGGCGCGCGTACAGGCCCTGCAGAAGCTGCAAGAGA
AATGGAAGTCCACGGCGGCGCCGTACCCGGCCATGTACTCGAGCTTCTTGGGCGGGATCATCCTGGACCCGGCCATGATG
GCCCTCCCCATCGACGACCACATGGTCCACCGCGGCCACGGCGTCTTCGACACGGCCATGCTCCTCGACGGCCACCTTTA
CGAGCTCGACACGCACCTCGACCGCTTCCTGCGCTCCGCGGCGCAGGCCAAGGTGGGTACCCCGTTCCCGCGCGACACGC
TGCGCAGCATCCTCGTGCAGATGACGGCGGCGTCCGGCTGCCGGAAGGGCTCCATCCGGTATTGGCTCAGCTCCGGCCCC
GGCGACTTCCTGCTCTCCTCCAGCGGCTGCCCCGGCCCGGCCTTCTACGCCGTCGTCATCCCGTCCGACTACGCGCAGTG
CCGCCACGGCGTGCGCGCCGTGACCACGTCGGTGCCCATGAAGCCGCCGCTGTTCGCCACCATGAAGAACGTCAACTACC
TGCCCAACGTGCTGTCCATCATGGACGCGGAGGAGCGCGGCGCGTTCGCGTCCGTGTGGGTGGACGAGCAGGGGTACGTC
GCCGAGGGCCCCATGGTGAACGTCGCCTTCGTCACCCAGGGCGGCGAGCTCGTGCTCCCGGTGTTCGACAAGATCCTCAG
CGGGTGCACCGCCAAGCGGATGCTGGCGCTGGCGCCGAAGCTCGTCGAGGCCGGCCTGCTCAAGGGCGTCAGCACCCAGC
ACATCACCGCCGCCGACGCCAAGCGCTCCGTGGAGATGGCCTTCGTCGGCAGCGGCCTGCCCGTGCTGCCCATCGTCGAG
TGGGACGGCCAGCCCATCGGCGACGGTAAGCGTCACCCGCTGTCAAAGCTGATCGATTGTTTATTGGAACAAGATAGCAT
GCGTCCATGGATCGTTGCGTTTGGTTGGTTATAATTGGTAC--------------GTG----TGATGCAGGGAAGGTGGG
GAAGCTTATGCTGGCGTTGTCCGATCTGCTCTGGGAGGACATGAAGTCCGGGCCGGACAGGGTCGCCGTTCCATACAAGT
GATGCAAGGGAGGGGAATGCTGGAGAGATGGCGTGTGCATGCGCA----CGGGCACGATCGTTCGTGTACAAGATAGTGT
GTGAGCCGAGCCGCAATTTGGTGCCCGTACTGTTTGTCACTTGACTTGTCAAGTCCTGTTCTGTATAACTGTGGTATGTG
TGTGCCGGATGGA---CTCACCAAATG---AATAATACGATCTTGGGTCTTTCGCGGCATTG-GAAGAGAAATGACACAC
A-------TACGGCAGAATTTTACGGGTTAAGAGCATCTTCAACAGGCGCGGCAAAACGCGTGCCCGCGCGGTAAAAGCA
GTTTTTCGCGCGCGCCGATTGGTTCCGCGCGCTCCAGCGGTGGCGGGAGGTTACCGCGCGCG-G----------------
--GAAGCGTTT--GCGCGCGCGGGAGAAAGCGGCACGCGGCGCGGTAGATTTGGCACGCCGCTTCACGCGCGCCTATAAA
GTCTCGCGCTTCGCCACGCGCACAGAAC----AGCCACGTGCCCTCCTCCTCGCTGCTTCGCCGCTTCGCCGCTTTCTGA
GCCACCATCGCGCCACCATGTCGCCGCGCCGCCGGGGTGCTTCGGGCTTTCGTGGCGTCCGCGAGCGCCCCAACGGCCGG
TACTCCGCCGAGATACGGTCTGGCGACGTCCGGCTCGGCCTCGGGACGTTCCGGAGCGCGCGCGAGGCGGCCCGCGCGTA
CGACGCGGTGGCGTGACGCTTGGAGAGGCCCCGATCGCAGATGAATTTGCGGGACGTCTTCACGCGCGAGGAGGCGCAGC
GCCTCGCCCGTCCGCCGCGTCTCATCACGGACATGGATCGTGCCGACCATTCTCGGCGGCAGCGCCGTCTCCTCGTCGCC
GA---GGAGGGCGAGCGAGCCATGACGGAGTGGCGCCGTCACCACCCAGAGGACGTCGACGCTGAGCGTGCCTACTGGGC
GGAGAGGACGGCAAGGCGCCGCTCGGAGCAGGCGGACCGGCGTCAGCGGAAGGCAGTGGCGAACGAGCAGTGCGACATCG
TCTCCGTA
>chr3D_334
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-------------CTGAGGACCTGGTTTCCATGTCTACTATCCTGTACCGGTATCCGCATCTGTATCGCTAATTCGCTAC
GCCGCCTACCACTACCGGTGCAGCTGCTCCCATCCATCCATGCTCCACGCTCCACGGTGAACACCGCCCCCCGTGCCGTG
CTCAAGGTCGAAACGCCGCGATACACATCCACCGATCCCCCGTCCGATGGCGAGTGGGCCGTCGTTTCTATTCCAC----
-CAGCGAGCGACGGCGAACGCGTCGCACCTCTGGCCATCGCCGTTGCCACCGCGTAGGAGAAAGAAAAGATCTGACCGAT
CGGCT---CAGGGCCGGGTAGTCGGTCGCCACGGCGCTGTCCGTCC--------------TCGCTCGCCCCGGAACAAAC
GCAGAAAACGCGAGGGGATACAACAAGGGCAGGCGACCCGCGGTGGGGG--CGCCGGGCCGGCTGAACTTGTCGCGCTCC
GTCTCCACTCTCTCCCACGTTGCCCGCCCCTTTGTCCAC-------TACCTATCTTTTCTGTTAGACCATTCGACGCCAC
GTCCGCGCGCGTCACGGCGCAGCGAGCAGGCCGGCCGGCCGGCCGATTATAAAACCTCAGTACGAGCAGGCGCTCCCCTC
GCACTGCTACTACACTCGAGCTACCTCTGCTACTC-----TCTACTTTGCCGTGTTCTTCTCTCACGGATCGGATC----
-AGATCAGATCAGATCACCATGGGCTCCCACGTTCAGGGTGAGTTGAGCCGATCGATCCTGAGGTTTGCTGCGCCGAGCT
TGTTGTTGGGCTGGCTCATGGT-ATTTCCCTACA-GCTTACCTGATCTTCGATTTGTTTTTGCTCTCAGGGGAGGATCAA
GTCCCCGTCTATGAATCGGGTGCAGATGTGAGTTCCTCCTCCTCCTCCTCAATTTGTGACAGAGCGAAGCCAATCTAGCT
AGAGAAAAGCTCTTGATCTGCATCGGCCTTTCACGTACTGTGTAGTACATGTCTGACACGCAACTAAAATTTGATGAACT
GCCACCAACTTTTGGCGTCGGTATACTTTGTCGGGAGGCTCGCATTATTGATGCCATTTCCTCTTCTGTTTCTCCTTTCA
CTGTGCATGATGAGTAGACACACACTATTTATATTTTATTTTATGTTTTTTTTCCACAA----ATCTAAATGCAAAACAG
CCTAAATAATACTCAGTGCGAGTG-----------------------GAGCCTATGACTCTTTTGCTTTGTTTGCGTCGA
TCAACATACGCTCGCACT--------ATCAATGACTGTCCATCTCGGCGCGCGTACAGGCCCTGCAGAAGCTGCAGGAGA
AATGGAAGTCCACGGCGGCGCCGTACCCGGCCATGTACTCGAGCTTCTTGGGCGGCATCGTCCTGGACCCGGCCATGATG
GCCCTCCCCATCGACGACCACATGGTCCACCGCGGCCACGGCGTCTTCGACACGGCCATGCTCCTCGACGGCCACCTCTA
CGAGCTCGACACGCACCTCGATCGCTTCCTGCGCTCCGCGGCGCAGGCCAAGGTGGGCACCCCGTTCCCGCGCGACACGC
TGCGCAGCATCCTCGTGCAGATGACGGCGGCGTCCGGCTGCCGGAAGGGCTCCATCCGGTACTGGCTCAGCTCCGGCCCC
GGCGACTTCCTGCTCTCCTCCAGCGGCTGCCCCGGCCCGGCCTTCTACGCCGTGGTGATCCCGTCCGACTACGCGCAGTG
CCGCGACGGCGTGCGCGCCGTGACCACGTCGGTGCCCATGAAGCCGCCGCTGTTCGCCACCATGAAGAACGTCAACTACC
TCCCCAACGTGCTGTCCATCATGGACGCGGAGGAGCGCGGCGCGTTCGCGTCCGTGTGGGTGGACGAGCAGGGGTACGTC
GCCGAGGGCCCCATGGTGAACGTCGCCTTCGTCACCCAGGGCGGCGAGCTCGTGCTCCCGGTGTTCGACAAGATCCTCAG
CGGCTGCACCGCCAAGCGGATGCTGGCGCTGGCGCCGAAGCTCGTTGAGGCCGGCCTGCTCAAGGGCGTCAGCACCCAGC
ACATCACCGCCGACGACGCCAAGCGCTCCGTGGAGATGGCCTTCGTCGGCAGCGGCCTGCCCGTGCTGCCCATCGTCGAG
TGGGACGGCCAGCCCATCGGCGACGGTAAGCATCACCCGCTCTCAAAGCTGATCGATTGTTTTTTGGAACGAATTGGCAT
GCGCCCATGGATCGTTGCTTTTGGTTGGTTAATGAGGATTCGTGTGTGTGCGTTGGTG----TGATGCAGGGAAGGTGGG
GAAGCTGATGCTGGCGCTGTCCGATCTGCTCTGGGAGGACATGAAGTCCGGGCCGGACAGGGTCGCCGTTCCATACAAGT
GATCCAGGGGAGGGGAACGCTAGAGAGATGGCGTGTGCATGCGCA----CGAGCATGTTCGTGCGTGTACAAGATAGTGT
GTGAGCCGAGCCGCAGTTTGTTGCCCGTACTGTTTGTCACTTGACTTGTAAGTCA------TGTATAACTGTGGTATGTG
TGTGCCGGATGGATGACTCACGAAATG---AATAATACGATCTTGGGTCTTTCGCGGTATTG-GAGGAGAAATGATACAC
A-------TGCGGCATAATTTTACGGGTTAA-------------------------------------------------
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>chr3B_369
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---------------------------------------------------TATCCGTATCCGTATGGCTAATTCGCTAC
GCCGCCTACCAGTACCAGTACAGTTGCTCCCATCCATCCATGCTCCACG-------GTGAACAGCACCACCGGTGCGGTG
CTCGAGGTCGAAACGCCGCGATACACATCCACCGAT-CCCCGTCCGATGGCGAGTGGGCCGTCGTTTCTGTTCCAC----
-CAGCGAGCGACGGCGAACGCGTCGCGCCTCCGGCCAACAT--TTACCGCCGCGTAGG----AGAAAAGGTCTGACCGAT
CGGCT---C----------------TCGCCACGGCGCTGTCCGTCCGTCCAAGTCCATCCTCGCTCGCCCCGGAACAAAC
GCAGAAAACGCGAGGGGATACAACAAGGGCAGGCGGCCCGCGGTGGGGG--CGCCGGGCCGGCTAAACTTGTCGCGCTCC
GTCTCA-----CTCACTCTCCCAC--CCCCTTTGTCGTCTCTCGTCTACCTATCTTTTCTGTTAGACCATTCGACGCCAC
GTCCGCGCGCGTCACGGCGCAGCGAGCAGCCCGGCCGGCCGGCCGATTATAAAACCTCAGTGCGAGCAGGTGCTCCACTC
GCACTGCCACTCCACCCGT--TACCTCTGCTACTCGAACTTCATTCG-----------------------CGGATC----
-AGATCAGATCAGATCACCATGGGCTCCTACGTTCAGGGTGAGTTGAGCCGATCGATCCCGAGGTCTGCGGCGAGTTG--
----GTTGGGCTGCCTCGTGGTTTTCCCCCTAGTGGCTTACCTGATCTTTCATTTGTTTTTGCTGTCAGGTGAGGATGAA
GTTCCCGTCTATGAATCGGGTGCACATGTGAGTTCCTTCTCCCCCTCCCTCCTCCTCCTCAAT------------TAGCT
AGACAGAAGCTCTTGATCCGCATCGGCCTTTGACGAACTGTGC---ACATGTCTGACACGCAACTAAAATTGCACGAACT
GCCACCAACTCTTGACGTCGGTATACTTTGTCGGGAGGCTCGCATTATTGATGCCATTCCCTCATCTGTTTCTCCTTTCA
CTGTGCACGATGAGTAGACACACACTATTTATGTTTTATTTTGTGGGG--TTTCCACAAATCTATCTAAATGCAAAACAG
CCAAAATACTACTAATATGTTGGACCAATGAAGTTGATCTCAGCTATGAGCCTATGACTCTTTTGCTTTGTTTGCGTTGA
TTAACATATGCTTGCACGATCAAATGATCAATGGCTGTCCATCTCGGCGCGCGTACAGGCCCTGCAGAAGCTGCAAGAGA
AATGGAAGTCCACGGCGGCGCCGTACCCGGCCATGTACTCGAGCTTCTTGGGCGGGATCATCCTGGACCCGGCCATGATG
GCCCTCCCCATCGACGACCACATGGTCCACCGCGGCCACGGCGTCTTCGACACGGCCATGCTCCTCGACGGCCACCTCTA
CGAGCTCGACGCGCACCTCGACCGCTTCCTGCGCTCCGCGGCGCAGGCCAAGGTGGGCACCCCGTTCCCGCGCGACACGC
TGCGCAGCATCCTCGTGCAGATGACGGCGGCGTCCGGCTGCCGGAAGGGCTCCATCCGGTACTGGCTGAGCTCCGGCCCG
GGCGACTTCCTGCTCTCCTCCAGCGGCTGTCCCGGCCCGGCCTTCTACGCCGTGGCGATCCCGTCCGACTACGCGCAGTG
CCGCGACGGCGTGCGCGCCGTGACCACGTCGGTGCCCATGAAGCCGCCGCTGTTCGCCACCATGAAGAACGTCAACTACC
TCCCTAATGTGCTGTCCATCATGGACGCCGAGGAGCGCGGCGCGTTCGCGTCCGTGTGGGTGGACGAGCAGGGGTACGTC
GCCGAGGGGCCCATGGTGAACGTCGCCTTCGTCACCCAGGGCGGCGAGCTCGTGCTCCCTGTGTTCGACAAGATCCTCAG
CGGGTGCACAGCCAAGCGGATGCTGGCGCTGGCGCCGAAGCTCGTGGAGGCCGGCCTGCTCAAGGGCGTCAGCACCCAGC
ACATCACCGCCGACGACGCCAAGCGCTCCGTGGAGATGGCCTTTGTCGGCAGCGGCCTGCCCGTGCTGCCCATCGTCGAG
TGGGACGGCCAGCCCATCGGCGACGGTAAGCATCACCCGCTCTCAAAGCTGATCGATTGTTTTTGGAACAAAT-------
-------TGGATCGTTGCGTTTGGTTGGTTAAT------TCGTGTGTGTGCGTTGATGTGAATGATGCAGGGAAGGTGGG
GAAGCTGATGCTGGCGCTGTCCGATCTGCTCTGGGAGGACATGAAGTCCGGGCCGGACAGGGTCGCCGTTCCATACAAGT
GATCCAGGGGAGGGGAACGCTAGAGAGATGGCGTGTGCATGCGCAAGCACGGGCACGTTCGTGCGTGTACAAGATAGTGT
GTGAGCCGAGCCGCAATTTGTTGCCCGTACTGTTTGTCACTTGACTTGTCAAGCC-----CTGTATAACTGTGGTATGTG
TGTGCCGGATGGATGACTCACCAAATAAATAATACTACGATCTTGGGTCTTTCGCGGTATTTAGAGGATAAATGATACAC
ATATCACGTGCGGCAGAATTTTACGGGTTAA-------------------------------------------------
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>chr7A_2885
TACCGGTA------------------------------------------------------------------------
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----------------------------TAAGAGCATCTCGAACAGGCGCCGCAAAACGCGCGCCCGCGTGGTAAAAGCA
GTTTTTTGCGCGCGTCGGTTGGTTTCACGCGCTTCAGCGGTGACGGGAAGTTACCGCACGCG-GAAGCGTT---------
----------TGCGCGCGCGCGGGAGAAAGCGGCACGCGGCGCGGTAGATTTGGCGCGCCGCTTCACGCGCGTTTATAAA
GTTTCGCGCTTCGCCACGCGCACAGAAC----AGCCACGCGCCTTCCTCCTTGCAACCTCGCCGCTTCGCCGCTTTCTGC
GTCACCACCGCGCCACCATGCCGTCGCGCCGCCGGGGTGCTTCGGGCTTTCGCGGCGTCCGCGAGCGCCCCAACGGCTGG
TACTCCGCCGAGATACGGTCCGGCGACGTCCGGCTCGGCCTCGGGACGTTCCAGAGCGCGCGCGAGGCGGCCCGCGCGTA
CGACGCGGCGGCGTGGCGCTTGGAGAGGCCCCGGTCGCAGATGAATTTCCGGGACGTCTTCACGCGCGAGGAGGCGCAGC
GCCTCGCCCCTCCGCCGCGTCTCATCACGGACATGGACCGTGCCGACCACTCTCGGCGGCAGCGCTGTCTCCTCGTCGCC
GA---GGA---CGAGCGAGCCATGGCGGAGTGGCGTCGTCGTCACCCAGAGGACGTCGACGCCGAGCGTGCCTACTGTGC
GGAGAGGACGGCAAGGCGCCGCTCGGAGCCGGCGGACCGGCGTCAGCGGAAGGCAGTGGCGAACGAGCAGTGCGACATCG
TCTCCG--
>chr1A_2891
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---------------------------TTAAGAGCATCTTCAACAGGCGCGGCAAAACGCGTGTCCGCACGGTAAAAACA
GTTTTTCACGCGTGTCGGTTGGTTCCGCGCGCTGCAGCGGTGGCGAAAAATTACCGCGTGCGGGAAGCGTT---------
----------TGCGCGTGTGCGGGAGAAAGCGGCACGCGGCGGGGTAGATTTGGCGCGCCGCTTCACGCGCGCCTATAAA
GTTTCGCGCTTCGTCACGCACACAGAAC----AACCATGCGCCCTCCTCCTCGCAACCTCTCCGCTTCGCCGCTTTCTGC
GCCACCATCGCGCCACCATGCCGCCGCGCCGCCGGGGTGCTTCCGGCTTTCGCGGCGTCCGCGAGCGCCCCAACGGCTGG
TACTCCGCCGAAATACAGTCCGGCGACGTCCGGCTCGGCCTCAAGACGTTCCGGAGCGCGCGCGAGACGGCCCGCGCGTA
CGATGCGGCGGCGTGGCGCTTGGAGAGGCCCCGGTCGCAGATGAATTTCCGGGACGTCTTCATGCGCGAGGAGGCGCAGC
GCCTCCTCCCTCCGCCGCGTCTCATCACGGATATGGACCGTACTGACCACTCTCGGCGGCAGCGCCGTCTCCTCGTCGCC
GAAGAGGA---CGAGCGAGCCATGGCGGAGTGGCGCCGTCGCCACCCAGAGGACGTCGACGCCGAGCGTGCCTACTGGGC
GGAGAGGACGGCAAGGCGCCGCTCGGAGCGGGCGGACCGGCGTCAGCGGAAGGCAGTGGCGAACGAGCAGTGCGACATCG
TCTCCG--
>chr3A_2892
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----------------------------TAAGAGCATCTCCAACAGGCGCGGCAAAACATGCGCCCGCGCGGTAAAAGCA
GTTTTTCGCGCGCGCAGGTTGGTTCCGCGCGCGTCAGCGGTGGCGGGAAGTTACCGCGCGCGAGAAGCGTT---------
----------TGCGCGCGCGCGGGAGAAAGCGGCACGCGGCGCGGTAGATGTGGCGCGCCGCTTCACGCGCGCCTATAAA
GTCCCGCGCTTCGCCACGCGCACAGAAC----AGCCACGCGCCCTCCTCCTCGCAACCTCGTCGCTTTGCCGCTTTCTGC
GCCACCACCGCGCCACCATGCCGCCGCGCCGCTGGGGTGCTTCGGGCTTTCGCGGCGTCCGCGAGCGCCCCAACGGCTGG
TACTCCGCCGAGATACGGGCCGGCGACGTCCGGCTCGGCCTCAGGACGTTTCGGAGCGTGCGCGAAGCGGCCCGTGCGTA
CGACGCGGCGGCGTGGCGCTTGGAGAGGCCCCGGTTGCAGATGAATTTCCGGGACGTCTTCACGCGCGAGGAGGCGCAGC
GCGTCGCCCCTCCGCCACGTCTCATCACGGACATGGACCGTGCCGACCACTCTCGGCGGCAGCGCCGTCTCCTCGTCGCC
GAGGAGGA---CGAGCGAGCCATGGCGGAGTGGCGCCGTCGCCACCCAGAGGACGTCGACGCCGAGCGTGCCTACTGGGC
GGAGAGGACGGCAAGGCGCCGCTCGGAGCGGGCGGACCGGCGTCAGCGGAAGGCAGTGGCAAACGAGAAGTGCGACATCG
TCTCCG--
>chr6A_2892
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----------------------------TAAGAGCATCTCCAACAGGCGCGGCAAAACACGTGCCCGCGCGGTAAAAGCA
GTTTTTCGCGCGCGCCGGTTGGTTCCGCACACTCCAGCGGTGGCGGGAAGTTACCGCGCGCGGGAAGCGTT---------
----------TGCGCGCGCGCGGGAGAAAGCGGCACGCGGCGCAGTAGATTTGGCGCGCCGCTTCACGCGCGCCTATAAA
GTCCCGCGCTTCGCCACGCGCACAGAAC----AGCCACGCGCCCTCCTCCTCGCAACCTCGCCGCTTCGCCGCTTTCTGC
GCCACCACCGCGCCACCATGCCGCCGCGCCGCCGGGGTGCTTCGGGCTTTCGCGGCGTCCGCGAGCGCCCCAACGGCTGG
TACTCCGCCGAGATACGGTCCGGCGACGTCCGGCTCGGCCTCGGGACGTTCCGGAGCGCGCGCGAGGCAGCCCGTGCGTA
CGACGCGGCGGCGTGGCGCTTGTAGAGGCCCCGGTTGCAGATGAATTTCCGGGACGTCTTCATGCGCGAGGAGGCGCAGC
GCCTCGCCCCTCCGCCACGTCTCATCACGGACATGAACTGTGCCGACCACTCTCGGCGGCAGCGCCGTCTCCTCGTCGCC
GAAGAGGA---CGAGCGAGCCATGGCGGAGTGGCGCCGTCGCCACCCAGAGGACGTCGACGCCGAGCGTGCCTACTGGAC
GGAGAGGACGGCAAGGCGCCGCTCGGAGCGGGCGGACCGGCGTCAGCGGAAGGCAGTGGCGAACGAGCAGTGCGACATCG
TCTCCG--
>chr5A_2892
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----------------------------TAAGAGCATCTCCAACAGGCGCGGCAAAACGCGCGCCCGCGCGGTAAAAGAA
GTTTTTCGCGCGCGCCGGTTGGTTCCGCGCGCTCCAGCGGTGGCGGGAAGTTACCGCGCGCGGGAAGCATT---------
----------TGCGCGCGCGCGGAAGAAAACGGCACGCGGCGCGGTAGATTTGGCGCGCCGCTTCACGCGCACCTATAAA
GTCCCGCGCTTCGCCACGCACACAGAAC----ATCCACGCGCCCTCCTCCTCGCAACCTCGCCGCTTCGCCGCTTTCTGC
GCCACCACCGCGCCACCATACCACCGCGCCGTCGGGGTGCTTCGGGCTTTCGCGGCGTCCGCGAGCGCCCCAACGGCTGG
TACTCCGCCGAGATACGGGCCGGCGACGTCCGGCTCGGCCTCGGGACGTTCCGGAGCGCGCGCGAGGCGGCCCGCGCGTA
CGACGCGGCGGCATGGCGCTTGGAGAGGACCCGGTCACAGATGAATTTTCGGGACGTCTTCACACGCGAGGAGGCGCATC
GCGTCGCCCCTCCGCCGCGTCTCATCACGGACATGGACCGTGCCGATCACTCTCGGCGGCAGCGCCATCTCCTCGTCGCC
GAGGAGGA---CGAGCGAGCCATGGCGGAGTGGCGCCGTCGCCACCCAGAGGACGTCGACACCGAGCGTGCCTACTGGGC
GGAGAGGACGGCAAGGCGCCGCTCGGAGCGGGCGGACCGGCGTCAGCGGAAGGCAGTGGCGAACGAGCAGTGCGACATCG
TCTCC---
>chr2A_2892
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----------------------------TAAGAGCATCTCCAACAGGCGCGGCAAAACGCGCGCCCGCGCGGTAAAAGCA
GTTTTTCGCGCGCGCCGGTTGGTTCCGCGCGCTCCAGCGGTGGCGGGAAGTTACCGCGCGCGGGAAGCGTTTGCGCGCGC
GGGAAGCGTTTGCGCGCGCGGGGGAGAAAGCGGCACGCGGTGCGGTAGATTTGGCGCGCCGCTTCACGCGCGCCTATAAA
GTCCCGCGCTTCGCCACGCGCACAGAAC----AGCCACGCGCCCTCCTCCTCGCAACCTCGCCGCTTCGCCGCTTTCTGC
GCCACCACCGCGCCACCATGCCGCCGCGCCGCCGGGGTGCTTCGGGCTTTCGCGGCGTCCGCGAGCGCCCCAACGGCTGG
TACTCCGCCGAGATACGGTCCGGCGACGTCCGGCTCGGCCTCGGGACGTTCCGGAGCGCGCGCGAGGCGGCCCGCGTGTA
CGACGCGGCGGCGTGGCGCTTGGAGAGGCCCCGGTCGCAGATGAATTTCCGGGACGTCTTCACGCGCGAGGAGGCGCAGC
GCCTCGCCCCTCCGCCGCGTCTCATCACGGACATGGACCGTGCCGACCACTCTCGGCGGCAGCGCCGTCTCCTCGTCGCC
GAAGAGGA---CGAGCGAGCCATGGCGGAGTGGCGCCGTCGCCACCCAAAGGACGTCGACGCCGAGCGTGCCTACTGGGC
GGAGAGGACGGCAAGGCGCCGCTTGGAGCGGGCGGACCGGTGTCAGCGGAAGGCAGTGGCGAACGAGCAGTGCGACATCG
TCTCCG--
>chr5A_2894
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------------------------------AGAGCATCTCCAACAGGCGCGACAAAACGCGCGCCCGCGTGGTAAAAGCA
GTTTTTCGCGCGCGCTGGTTGGTTCCGCGTGCTCCAGCGGTGGCGGGAAGTTACCGCGCGCGGAAAGCGTT---------
----------TGCGCGCGAGAGAGAGAAAGCGACACGCGGCGCGGTAGATTTGGCGCGCCGCTTCACGCGCGCCTATAAA
GTCCCGCGCTTCGCCACGCGCACAGAAC----AGCCACG-GCCCTCCTCCTCGCAACCTCTCCGCTTCGCCGCTTTCTGC
GCCACCACCGCGCCACCATGCCGCCGCACCGCCGGGATGCTTCGGCCTTTCGCGGCGTCCCTGAGCGCCCCAACGGCTGG
TACTCCGCCGAGATACGGTTCGGCGACGTCCAGCTCGGCCTCGGGACGTTCCGGAGCGCGCGCGAGGCGGCCCGCGCATA
CGTCGCGGCGGCGTGGCACTTGGAGAGGCCCCGGTCGCAGATGAATTTTCGGGACGTCTTCACGCGCGAGGAGGCGCAGC
GCCTCGCCCCTCTGCCGCGTCTCATCACGAACATGGACCGTGCCGACCACTCTCGGCGGCAGCGCCGTCTCCTCGTCGCC
GAAGAGGA---CGAGCGGGCCATGGCGGAGTGGCGTCGTCGCCACCCAGAGGACGTCGACGCCGAGCGTGCCTACTCGGC
GGAGAGGACGGCAAGGCGCCGCTCGGAGCGGGCGGACCGGCGTCAGCGGAAGGAAGTGGCGAACGAGCAGTGCGACATCG
TCTCCG--
>chr5A_2894
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------------------------------AGAGCATCTCCAACAGGCACGCCAAAACGCGCGCCCGCGCAGTAAAAGCA
GTTTTTC--GCGCGCCGGTTGATTCCGCGCGCTCCAGCGGTGGCGGGAAGTTACCGTGCGTGGGAAGCGTT---------
----------TGCGCGCGCGCGGGAGAAAGCGGCACACGGCGCGGTAGATTTGACGCGCCGCTTCACGCGCGCCTATAAA
GTCCCACGCTTCGCCACGCGCACGGAAC----AGCCACGCGCCCTCCTTCTCGTAACCTCGCCGCTTCGCCGCTTTCTGC
GCTACCACCGCGCCACCATGCCGCCGCACCGTCGGGGTGCTTCGGGCTTTCGCGGCGTCCGCAAGCGCCCCAACGGCTGG
TACTCCGCCGAGATACGGTCCGGCGACGTCCGGCTCGGCCTCGGGACATTCCGGAGCGCGCGCGAGGCTGCTCGCGCGTA
CGACGCGGCGGCGTGGCGCTTGGAGAGGCCCCGGTCGCAGATGAATTTCCGGAACGTCTTCACGCGCGAGGAGGCGCAGC
GCCTCGCCCCTCCGCCGCGTCTCATCACGGACATGGACCGTGCCGACCACTCTCGGCGGCAGCGCCGTCTCCTCGTCGCC
GACGAGGA---CGAGCGAGCCATGGCGGAGTGGCGCTGTCGCCACCCAGAGGACGTCGACGCCGAGCGTGCCTACTGGGC
GGAGAGGACGGCAAGGCGCCGCTCGGAGCGGGCAGACCGGCGTCAGCGGAAGGCAGTGGCGAACGAGCAGTGCGACATCG
TCTCCG--
>chr5A_2894
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------------------------------AGAGCATCTCCAACAGATGCGGCAAAACGCGCGCCCGCGCAGTAAAAGCA
GTTTTTCACGCGCGCCGGTTGGTTCCGTGCGCTCCATCGGTGGCGGGAAATTACCGCGCGTGGGAAGCGTT---------
----------TGCGCGCA--CGGGAGAAAGCGGCACGCGGCGCGGTAGATTTGGCGTGCCGCTTCACACGCGCCTATAAA
GTCCCGCGCTTCGCCACGCGCATAGAACAGACAGCCACGCGCCCTTCTCCTCGCAACCTCGCCGCTTCGCCGCTTTCTGT
GCCACCACCGCGCCACCATGCCGCCGCGCCGTCGGGGTGCTTCGGGCTTTCGCGGCGTCCGCGAGCGCCCCAACGGCTGG
TACTCCACTGAGATACAGTCCGGCGACGTCCGGCTCGGCCTCGGGACGTTCCGGAGTACGCGCGAGGCGGCCCGCGCGTA
CGATGCGGCGGCGTGGCGCTTGGAGAGGCCCCGGTCGCAGATGAATTTCCGGGACGTCTTCACGCGCGAGGAGGCGCAGC
GCCTCGCCCCTCCGCCGTGTCTCATCACGGACATGGACCGTGCCGACCACTCTCGGTGGCAGCGCCGTCTCCTTGTCGCT
GAAGAGAA---CGAGCAAGCCATGGCGGAGTGGCGCCGTCGCCACCCAGAGAACGTCGACGCCGAGCGTGCCTACTGGGC
GGAGAGGACGGCAAGGCGCCGCTTGGAGCTGGTGGACCGGTGTCAGCGGAAGGCAGTGGCGAACAAGCAGTGTGACATCG
TCT-----
>SNPs
S-S-S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS-------SS---------S-S---SS--S-------S------------------------------
-------S---------------------------------------SS---------S---S----------------S
----S---S------------------------------S---------------------------S--S--SSSSSSS
S-------------------------------------------------------S--------S--------------
-----SSS----------S-------------------------------------------------------------
-------------------------------------------------SS----------------S------------
S-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------SSS-SSSS-S-SSS--------------------------------------SSSS
S---------------------S-----S-------S----S-------------------------------SS-----
S--------------------S-----------------------------------------------------S----
-----------S-----------------------------------------------S-----S----S---------
--------------------------------------------------------------------------------
--------------------------------------------------------S-----S-----------------
-------------------------------------------------S---S-------S------------------
---------S----S--------------S----S-----------------------------S---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------S--
---------------------------------------------------------S----------------------
-------------------------------------------------------------S------------------
-----------------------------------------------------S--S-----------------------
----S---------------------------------------------------------------------------
-S------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------S----------------------------------
------------S-------------------------------------------------------------------
-------------------------------S---------S--------------------S---------SS-S----
---S---------------------------SSSSS-S-S----------------------------------------
------S---------S---------------------------------------------------------------
---S--S----------S---S-----------------------------------S----S-----------------
--------------------S--------------------------------S-SSSSS--------------------
---------------------------------------------------------S-------S---------S----
---------S----------------------------------------------------------------------
-----------------S------------------------------S-------------------------------
-------------------------------------------------------S------------------------
---------------------------------------S--------------SS-S---------------------S
--------------------S-------------------------------S------------------------S--
--------------------S-----------------------------------------------------------
--------S------S-----------------S--------------S-------------------------------
---------S---------------------------S-----------S------------------------------
--------SSS-------------S---------------S---------------------S-----------------
-----------------------------S--------------------------------------------------
------SS
>forward_123
--------------------------------------------------------------------------------
-----------------------TGTCCCGGGATACTGTAGCA-------------------------------------
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--------
>reverse_1212
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-----------CGAATCGGGTGCAGATGTGA-------------------------------------------------
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--------
>forward_354
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------TGAGGAGGTGGTTTCCAAGC----------------------------------------------
--------------------------------------------------------------------------------
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--------
>reverse_2054
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-----------------------------------------------------CGTCATCCCGTCCGACTAC--------
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--------
>forward_1041
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-------------------------------------------------------------CTCACGGATCGGATCGGAT
C-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------
>reverse_2595
--------------------------------------------------------------------------------
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----------------------------------TTGGTACGTGTGATGCAGGG--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------
>forward_1982
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------GGAAGGGCTCCATCCGGTAT------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------
>reverse_2821
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------GTGCCCGTACTGTTTGTCAC----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------
