Multiple sequence alignment - TraesCS3A01G160100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G160100 chr3A 100.000 2875 0 0 1 2875 160015548 160018422 0.000000e+00 5310.0
1 TraesCS3A01G160100 chr3A 85.854 1640 149 38 546 2144 159994937 159996534 0.000000e+00 1666.0
2 TraesCS3A01G160100 chr3A 81.671 431 53 11 2455 2875 160003585 160003999 4.590000e-88 335.0
3 TraesCS3A01G160100 chr3D 91.565 2134 110 21 4 2090 141649588 141651698 0.000000e+00 2880.0
4 TraesCS3A01G160100 chr3D 85.082 791 77 14 2084 2863 141652494 141653254 0.000000e+00 769.0
5 TraesCS3A01G160100 chr3D 77.961 304 65 2 1558 1860 10804765 10805067 3.780000e-44 189.0
6 TraesCS3A01G160100 chr3D 97.143 35 1 0 90 124 508584534 508584568 3.090000e-05 60.2
7 TraesCS3A01G160100 chr3B 87.329 2557 222 45 379 2875 203612414 203614928 0.000000e+00 2833.0
8 TraesCS3A01G160100 chr3B 94.595 37 2 0 92 128 13867613 13867577 1.110000e-04 58.4
9 TraesCS3A01G160100 chr4D 86.176 2105 163 51 379 2415 375115654 375117698 0.000000e+00 2158.0
10 TraesCS3A01G160100 chr4D 80.485 743 117 21 1148 1883 414328434 414327713 7.010000e-151 544.0
11 TraesCS3A01G160100 chr4A 80.000 740 120 18 1148 1883 49200043 49200758 3.280000e-144 521.0
12 TraesCS3A01G160100 chr4B 83.000 300 51 0 1561 1860 510562036 510561737 3.650000e-69 272.0
13 TraesCS3A01G160100 chr7A 87.879 99 11 1 2353 2451 204173426 204173329 6.510000e-22 115.0
14 TraesCS3A01G160100 chr5B 87.500 96 12 0 2353 2448 546904698 546904603 8.420000e-21 111.0
15 TraesCS3A01G160100 chr2B 85.149 101 15 0 2353 2453 10593777 10593877 1.410000e-18 104.0
16 TraesCS3A01G160100 chr7B 85.567 97 14 0 2353 2449 158375458 158375362 5.070000e-18 102.0
17 TraesCS3A01G160100 chr7B 83.333 102 16 1 2353 2453 440821127 440821026 3.050000e-15 93.5
18 TraesCS3A01G160100 chr2D 83.838 99 15 1 2353 2451 544207175 544207272 3.050000e-15 93.5
19 TraesCS3A01G160100 chr2D 94.595 37 2 0 92 128 576863648 576863684 1.110000e-04 58.4
20 TraesCS3A01G160100 chr6B 100.000 32 0 0 93 124 615643976 615643945 3.090000e-05 60.2
21 TraesCS3A01G160100 chr7D 94.595 37 2 0 92 128 188536553 188536589 1.110000e-04 58.4
22 TraesCS3A01G160100 chr6D 100.000 30 0 0 95 124 341998158 341998129 4.000000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G160100 chr3A 160015548 160018422 2874 False 5310.0 5310 100.0000 1 2875 1 chr3A.!!$F3 2874
1 TraesCS3A01G160100 chr3A 159994937 159996534 1597 False 1666.0 1666 85.8540 546 2144 1 chr3A.!!$F1 1598
2 TraesCS3A01G160100 chr3D 141649588 141653254 3666 False 1824.5 2880 88.3235 4 2863 2 chr3D.!!$F3 2859
3 TraesCS3A01G160100 chr3B 203612414 203614928 2514 False 2833.0 2833 87.3290 379 2875 1 chr3B.!!$F1 2496
4 TraesCS3A01G160100 chr4D 375115654 375117698 2044 False 2158.0 2158 86.1760 379 2415 1 chr4D.!!$F1 2036
5 TraesCS3A01G160100 chr4D 414327713 414328434 721 True 544.0 544 80.4850 1148 1883 1 chr4D.!!$R1 735
6 TraesCS3A01G160100 chr4A 49200043 49200758 715 False 521.0 521 80.0000 1148 1883 1 chr4A.!!$F1 735

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
945 1020 0.036952 AACACACAGCTCCCAGATCG 60.037 55.0 0.0 0.0 0.0 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2211 3110 0.911769 CACCCCAGCCTCTGTATCAA 59.088 55.0 0.0 0.0 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
132 135 6.887626 ACTCATAACAATTACGGGTGTTTT 57.112 33.333 0.00 0.00 38.80 2.43
157 160 4.617645 TGAAAAACAAACCTCAAACGTTCG 59.382 37.500 0.00 0.00 0.00 3.95
159 162 3.394313 AACAAACCTCAAACGTTCGTC 57.606 42.857 0.00 0.00 0.00 4.20
221 224 2.363795 CCCCTAGCTGACGTCCCA 60.364 66.667 14.12 0.00 0.00 4.37
238 241 4.561530 CGTCCCACTGATATTAGGTCCATG 60.562 50.000 0.00 0.00 0.00 3.66
239 242 4.348168 GTCCCACTGATATTAGGTCCATGT 59.652 45.833 0.00 0.00 0.00 3.21
299 302 6.169094 ACCATAATCGAATTATCAGCTCTGG 58.831 40.000 0.00 0.00 33.34 3.86
300 303 5.583854 CCATAATCGAATTATCAGCTCTGGG 59.416 44.000 0.00 0.00 33.34 4.45
329 332 2.109425 AACTTAACGGACCCTGCATC 57.891 50.000 0.00 0.00 0.00 3.91
370 373 3.841255 CTCTTTAGGTCTTCCTTGAGGGT 59.159 47.826 0.00 0.00 42.12 4.34
503 532 4.199310 CGAACATGAACATCCCAAGGTAT 58.801 43.478 0.00 0.00 0.00 2.73
587 629 2.109425 AAACGCCGCCTATTTCTTCT 57.891 45.000 0.00 0.00 0.00 2.85
623 669 6.707440 AATCGTCTCTAGATGTCTGTCATT 57.293 37.500 0.00 0.00 36.83 2.57
648 694 4.867047 ACACTGTATGAAGCAAAGATCGAG 59.133 41.667 0.00 0.00 0.00 4.04
724 786 6.065153 GTGTCTGCGCGTATATAAAATCTTG 58.935 40.000 8.43 0.00 0.00 3.02
806 875 1.003233 GTGACCTTGCCCACTCTCC 60.003 63.158 0.00 0.00 0.00 3.71
894 968 4.440145 GCCAGAAGCAAATCCCCA 57.560 55.556 0.00 0.00 42.97 4.96
895 969 2.906268 GCCAGAAGCAAATCCCCAT 58.094 52.632 0.00 0.00 42.97 4.00
908 982 1.285280 TCCCCATTGGAGAACACGAT 58.715 50.000 3.62 0.00 38.61 3.73
919 993 5.789521 TGGAGAACACGATCAAACAGATAA 58.210 37.500 0.00 0.00 37.00 1.75
945 1020 0.036952 AACACACAGCTCCCAGATCG 60.037 55.000 0.00 0.00 0.00 3.69
1287 1370 3.267860 CGCAAGCTCGCAGATCCC 61.268 66.667 0.00 0.00 33.89 3.85
1341 1424 2.281484 GCCACGAACTTCTGCCCA 60.281 61.111 0.00 0.00 0.00 5.36
1380 1463 2.672996 GACAATGGCGGCTGGTGT 60.673 61.111 11.43 11.42 0.00 4.16
1468 1551 1.202639 GCATCATCCCCGTCATGTACA 60.203 52.381 0.00 0.00 0.00 2.90
1473 1556 2.225382 TCCCCGTCATGTACAAGAGA 57.775 50.000 0.00 0.00 0.00 3.10
1485 1572 2.863401 ACAAGAGATACGCACGCATA 57.137 45.000 0.00 0.00 0.00 3.14
1633 1725 9.109393 TCATGATTATTTCAACCTAGTTACTGC 57.891 33.333 0.00 0.00 38.03 4.40
1756 1848 4.440250 GCACTCTCTAGCAAATCTTACCGA 60.440 45.833 0.00 0.00 0.00 4.69
1761 1853 7.824779 ACTCTCTAGCAAATCTTACCGAAAAAT 59.175 33.333 0.00 0.00 0.00 1.82
2047 2143 9.537192 AATTCATTGATAAAGGCATGTAACATG 57.463 29.630 0.00 0.00 0.00 3.21
2116 3014 7.054124 AGTTGGATGGTGTACATAAAGTATGG 58.946 38.462 0.00 0.00 40.72 2.74
2177 3075 9.968870 TTTATACTTGTGGAAACCAACATTTAC 57.031 29.630 0.00 0.00 34.18 2.01
2180 3078 6.702329 ACTTGTGGAAACCAACATTTACAAA 58.298 32.000 0.00 0.00 34.15 2.83
2200 3099 6.801575 ACAAAAATGTAAGTCAAATGGTCGT 58.198 32.000 0.00 0.00 0.00 4.34
2211 3110 5.822519 AGTCAAATGGTCGTGTGCATAATAT 59.177 36.000 0.00 0.00 0.00 1.28
2216 3115 7.977789 AATGGTCGTGTGCATAATATTGATA 57.022 32.000 0.00 0.00 0.00 2.15
2232 3131 0.466124 GATACAGAGGCTGGGGTGAC 59.534 60.000 0.00 0.00 35.51 3.67
2261 3160 7.673926 TCCTTTCCAAAGAAACAATATAAGGCT 59.326 33.333 0.32 0.00 37.07 4.58
2349 3248 1.927174 GACAACGGAATGTGATCGGAG 59.073 52.381 0.00 0.00 32.57 4.63
2366 3272 3.435671 TCGGAGGATTTTTCTCGAAAAGC 59.564 43.478 5.15 2.86 41.66 3.51
2377 3283 0.181587 TCGAAAAGCAGGACAACCCA 59.818 50.000 0.00 0.00 37.41 4.51
2405 3312 1.634753 CATCGAGCGATGCACACAG 59.365 57.895 18.40 0.00 44.27 3.66
2408 3315 1.131218 CGAGCGATGCACACAGTTG 59.869 57.895 0.00 0.00 0.00 3.16
2455 3362 8.417273 AGGCCTTACAAAATAAATACACAAGT 57.583 30.769 0.00 0.00 0.00 3.16
2497 3404 5.621228 GTGTTTGCTAATGTCTTTGAGTTCG 59.379 40.000 0.00 0.00 0.00 3.95
2507 3414 3.422546 GTCTTTGAGTTCGAGTTCTCACG 59.577 47.826 13.73 9.74 39.87 4.35
2511 3418 3.777478 TGAGTTCGAGTTCTCACGTTTT 58.223 40.909 11.20 0.00 36.04 2.43
2545 3452 7.763985 TCAATACATGTAGTATGTTGTCCACAG 59.236 37.037 11.91 0.00 42.56 3.66
2559 3466 3.563808 TGTCCACAGAAAGCACAATACAC 59.436 43.478 0.00 0.00 0.00 2.90
2561 3468 2.095768 CCACAGAAAGCACAATACACCG 60.096 50.000 0.00 0.00 0.00 4.94
2566 3473 3.252458 AGAAAGCACAATACACCGGAAAC 59.748 43.478 9.46 0.00 0.00 2.78
2573 3480 4.693566 CACAATACACCGGAAACATACTGT 59.306 41.667 9.46 0.97 0.00 3.55
2577 3484 3.934068 ACACCGGAAACATACTGTTAGG 58.066 45.455 9.46 1.26 40.14 2.69
2603 3510 5.395682 TCCCAAAGAAAGCAAATCATCTG 57.604 39.130 0.00 0.00 0.00 2.90
2645 3555 7.758076 TCATTTTTCACTAGTAGTACATGACCG 59.242 37.037 1.57 0.00 0.00 4.79
2665 3575 7.732025 TGACCGTTAGATCACCATAAATATGT 58.268 34.615 0.00 0.00 31.82 2.29
2686 3596 5.850614 TGTCACACATATCTCATCCATCAG 58.149 41.667 0.00 0.00 0.00 2.90
2696 3606 5.735285 TCTCATCCATCAGATCACCATAC 57.265 43.478 0.00 0.00 30.59 2.39
2702 3612 4.471025 TCCATCAGATCACCATACTTGTGT 59.529 41.667 0.00 0.00 35.25 3.72
2706 3616 7.336679 CCATCAGATCACCATACTTGTGTTTAA 59.663 37.037 0.00 0.00 35.25 1.52
2707 3617 8.729756 CATCAGATCACCATACTTGTGTTTAAA 58.270 33.333 0.00 0.00 35.25 1.52
2789 3699 2.229784 CCTCCAATCTTTGTGCAAGGTC 59.770 50.000 0.00 0.00 32.64 3.85
2807 3717 3.336138 GTCTCTTACCAGACCTTTGGG 57.664 52.381 0.00 0.00 42.76 4.12
2808 3718 1.628846 TCTCTTACCAGACCTTTGGGC 59.371 52.381 0.00 0.00 42.76 5.36
2809 3719 1.630878 CTCTTACCAGACCTTTGGGCT 59.369 52.381 0.00 0.00 42.76 5.19
2810 3720 1.628846 TCTTACCAGACCTTTGGGCTC 59.371 52.381 0.00 0.00 42.76 4.70
2811 3721 1.630878 CTTACCAGACCTTTGGGCTCT 59.369 52.381 0.00 0.00 42.76 4.09
2848 3758 0.240945 GTCCAAGGTGGTCAAATGCG 59.759 55.000 0.00 0.00 39.03 4.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
132 135 6.345882 CGAACGTTTGAGGTTTGTTTTTCAAA 60.346 34.615 10.16 0.00 42.79 2.69
135 138 4.618067 ACGAACGTTTGAGGTTTGTTTTTC 59.382 37.500 22.34 0.00 37.31 2.29
136 139 4.548494 ACGAACGTTTGAGGTTTGTTTTT 58.452 34.783 22.34 0.00 37.31 1.94
148 151 1.300388 ACCCTCCGACGAACGTTTG 60.300 57.895 14.14 14.14 40.78 2.93
157 160 2.047179 GTGAAGGCACCCTCCGAC 60.047 66.667 0.00 0.00 39.14 4.79
159 162 3.649277 CTCGTGAAGGCACCCTCCG 62.649 68.421 0.00 0.00 42.09 4.63
218 221 4.982241 ACATGGACCTAATATCAGTGGG 57.018 45.455 0.00 0.00 0.00 4.61
219 222 8.924511 AAATAACATGGACCTAATATCAGTGG 57.075 34.615 0.00 0.00 0.00 4.00
259 262 7.753132 TCGATTATGGTTGCAAAACTGTATTTC 59.247 33.333 0.00 0.00 32.01 2.17
261 264 7.151999 TCGATTATGGTTGCAAAACTGTATT 57.848 32.000 0.00 0.00 32.01 1.89
263 266 6.561737 TTCGATTATGGTTGCAAAACTGTA 57.438 33.333 0.00 0.00 32.01 2.74
264 267 5.446143 TTCGATTATGGTTGCAAAACTGT 57.554 34.783 0.00 0.00 32.01 3.55
265 268 6.949578 AATTCGATTATGGTTGCAAAACTG 57.050 33.333 0.00 0.00 32.01 3.16
266 269 8.465999 TGATAATTCGATTATGGTTGCAAAACT 58.534 29.630 0.00 0.00 35.68 2.66
267 270 8.627487 TGATAATTCGATTATGGTTGCAAAAC 57.373 30.769 0.00 0.00 35.68 2.43
268 271 7.434897 GCTGATAATTCGATTATGGTTGCAAAA 59.565 33.333 0.00 0.00 35.68 2.44
269 272 6.917477 GCTGATAATTCGATTATGGTTGCAAA 59.083 34.615 0.00 0.00 35.68 3.68
299 302 3.683340 GTCCGTTAAGTTTCATCTGTCCC 59.317 47.826 0.00 0.00 0.00 4.46
300 303 3.683340 GGTCCGTTAAGTTTCATCTGTCC 59.317 47.826 0.00 0.00 0.00 4.02
329 332 4.770795 AGAGTTGAATCCATCCGGTTTAG 58.229 43.478 0.00 0.00 0.00 1.85
503 532 5.759059 AGGATATTTGCTTGACTTGATGGA 58.241 37.500 0.00 0.00 0.00 3.41
587 629 7.207383 TCTAGAGACGATTTTTGACACTTTCA 58.793 34.615 0.00 0.00 0.00 2.69
623 669 4.627035 CGATCTTTGCTTCATACAGTGTCA 59.373 41.667 0.00 0.00 0.00 3.58
806 875 3.313526 CCTTTGATTGATCCGTAGCTTGG 59.686 47.826 0.00 0.00 0.00 3.61
894 968 4.641396 TCTGTTTGATCGTGTTCTCCAAT 58.359 39.130 0.00 0.00 0.00 3.16
895 969 4.066646 TCTGTTTGATCGTGTTCTCCAA 57.933 40.909 0.00 0.00 0.00 3.53
901 975 5.940192 TTGCTTATCTGTTTGATCGTGTT 57.060 34.783 0.00 0.00 36.65 3.32
908 982 6.094742 TGTGTGTTCTTTGCTTATCTGTTTGA 59.905 34.615 0.00 0.00 0.00 2.69
919 993 1.312815 GGAGCTGTGTGTTCTTTGCT 58.687 50.000 0.00 0.00 0.00 3.91
945 1020 1.398390 CAAACTTATCTGCACGGAGCC 59.602 52.381 0.00 0.00 44.83 4.70
1015 1096 0.178068 ACCACCGCAATAGCTCGAAT 59.822 50.000 0.00 0.00 39.10 3.34
1016 1097 0.739462 CACCACCGCAATAGCTCGAA 60.739 55.000 0.00 0.00 39.10 3.71
1239 1320 0.250295 TCTTGTAGCACTGCCCACAC 60.250 55.000 5.72 0.00 0.00 3.82
1278 1361 2.475466 GCACCACATGGGATCTGCG 61.475 63.158 0.00 0.00 41.15 5.18
1341 1424 2.047560 GGGAGCGCGTTGTTAGGT 60.048 61.111 8.43 0.00 0.00 3.08
1380 1463 2.527123 TGTGGCCTCGGTGGGTTA 60.527 61.111 3.32 0.00 36.00 2.85
1468 1551 3.438297 ACTTATGCGTGCGTATCTCTT 57.562 42.857 0.00 0.00 0.00 2.85
1473 1556 4.939509 AAGAAAACTTATGCGTGCGTAT 57.060 36.364 0.50 0.50 0.00 3.06
1548 1640 2.640826 ACGGGACCCTACAGAAAAATCA 59.359 45.455 9.41 0.00 0.00 2.57
1633 1725 2.691522 CAGCTGCGACGTTCATCG 59.308 61.111 0.00 0.00 45.09 3.84
1756 1848 4.338118 TCAACCTGAACGAGAGCAATTTTT 59.662 37.500 0.00 0.00 0.00 1.94
1761 1853 1.540363 GGTCAACCTGAACGAGAGCAA 60.540 52.381 0.00 0.00 0.00 3.91
1996 2091 6.861572 TGATGTAGCGTATATACAAGAACTGC 59.138 38.462 13.22 6.19 36.75 4.40
2047 2143 9.708222 CATAGAACAAGTTAATCACATACAAGC 57.292 33.333 0.00 0.00 0.00 4.01
2086 2182 8.956426 ACTTTATGTACACCATCCAACTTTATG 58.044 33.333 0.00 0.00 34.86 1.90
2092 2990 6.238648 GCCATACTTTATGTACACCATCCAAC 60.239 42.308 0.00 0.00 34.86 3.77
2116 3014 4.688021 AGATGAAACTCGGTAGAATCAGC 58.312 43.478 0.00 0.00 31.78 4.26
2152 3050 9.132923 TGTAAATGTTGGTTTCCACAAGTATAA 57.867 29.630 0.00 0.00 30.78 0.98
2177 3075 6.695278 ACACGACCATTTGACTTACATTTTTG 59.305 34.615 0.00 0.00 0.00 2.44
2180 3078 5.757886 CACACGACCATTTGACTTACATTT 58.242 37.500 0.00 0.00 0.00 2.32
2184 3082 2.546368 TGCACACGACCATTTGACTTAC 59.454 45.455 0.00 0.00 0.00 2.34
2189 3087 6.317391 TCAATATTATGCACACGACCATTTGA 59.683 34.615 0.00 0.00 0.00 2.69
2198 3097 6.401474 GCCTCTGTATCAATATTATGCACACG 60.401 42.308 0.00 0.00 0.00 4.49
2200 3099 6.652062 CAGCCTCTGTATCAATATTATGCACA 59.348 38.462 0.00 0.00 0.00 4.57
2211 3110 0.911769 CACCCCAGCCTCTGTATCAA 59.088 55.000 0.00 0.00 0.00 2.57
2216 3115 2.930562 GGTCACCCCAGCCTCTGT 60.931 66.667 0.00 0.00 0.00 3.41
2232 3131 6.857437 ATATTGTTTCTTTGGAAAGGAGGG 57.143 37.500 0.00 0.00 41.43 4.30
2235 3134 7.673926 AGCCTTATATTGTTTCTTTGGAAAGGA 59.326 33.333 0.00 0.00 41.43 3.36
2261 3160 9.824216 AAAGACTAACTGACCCTGCTATATATA 57.176 33.333 0.00 0.00 0.00 0.86
2273 3172 9.485206 TGTTAAATGTCTAAAGACTAACTGACC 57.515 33.333 11.22 0.00 44.99 4.02
2303 3202 8.958119 TTCCCTTGATTAGTATGTGTACATTC 57.042 34.615 0.00 0.00 37.76 2.67
2312 3211 5.523916 CCGTTGTCTTCCCTTGATTAGTATG 59.476 44.000 0.00 0.00 0.00 2.39
2349 3248 4.023193 TGTCCTGCTTTTCGAGAAAAATCC 60.023 41.667 11.50 4.97 39.49 3.01
2366 3272 2.976494 AAAGCCCGTGGGTTGTCCTG 62.976 60.000 6.82 0.00 43.04 3.86
2377 3283 3.127533 GCTCGATGCAAAGCCCGT 61.128 61.111 7.64 0.00 42.31 5.28
2408 3315 7.010460 GGCCTTGTTGAATAATGCAATAAAGAC 59.990 37.037 0.00 0.00 30.03 3.01
2455 3362 7.333921 AGCAAACACAAACTGATTTTTCATCAA 59.666 29.630 0.00 0.00 0.00 2.57
2464 3371 7.042797 AGACATTAGCAAACACAAACTGATT 57.957 32.000 0.00 0.00 0.00 2.57
2531 3438 3.563808 TGTGCTTTCTGTGGACAACATAC 59.436 43.478 0.00 0.00 38.39 2.39
2545 3452 3.003897 TGTTTCCGGTGTATTGTGCTTTC 59.996 43.478 0.00 0.00 0.00 2.62
2566 3473 7.938140 TTCTTTGGGATTTCCTAACAGTATG 57.062 36.000 0.00 0.00 36.15 2.39
2573 3480 6.739331 TTTGCTTTCTTTGGGATTTCCTAA 57.261 33.333 0.00 0.00 34.50 2.69
2577 3484 7.064253 CAGATGATTTGCTTTCTTTGGGATTTC 59.936 37.037 0.00 0.00 0.00 2.17
2603 3510 7.595130 GTGAAAAATGAGTTTCTTGTATCCACC 59.405 37.037 0.00 0.00 38.17 4.61
2621 3531 7.609056 ACGGTCATGTACTACTAGTGAAAAAT 58.391 34.615 5.39 0.00 0.00 1.82
2637 3547 5.607939 TTATGGTGATCTAACGGTCATGT 57.392 39.130 0.00 0.00 0.00 3.21
2645 3555 9.325198 TGTGTGACATATTTATGGTGATCTAAC 57.675 33.333 0.00 0.00 38.00 2.34
2665 3575 6.495872 TGATCTGATGGATGAGATATGTGTGA 59.504 38.462 0.00 0.00 30.76 3.58
2745 3655 5.127356 GGGAGGTACCACAGATAGCATATAC 59.873 48.000 15.94 0.00 41.20 1.47
2789 3699 1.630878 AGCCCAAAGGTCTGGTAAGAG 59.369 52.381 0.00 0.00 34.33 2.85
2798 3708 4.273318 ACAAATATCAGAGCCCAAAGGTC 58.727 43.478 0.00 0.00 43.67 3.85
2799 3709 4.273318 GACAAATATCAGAGCCCAAAGGT 58.727 43.478 0.00 0.00 34.57 3.50
2800 3710 3.633986 GGACAAATATCAGAGCCCAAAGG 59.366 47.826 0.00 0.00 0.00 3.11
2801 3711 4.530875 AGGACAAATATCAGAGCCCAAAG 58.469 43.478 0.00 0.00 0.00 2.77
2802 3712 4.591321 AGGACAAATATCAGAGCCCAAA 57.409 40.909 0.00 0.00 0.00 3.28
2803 3713 4.272489 CAAGGACAAATATCAGAGCCCAA 58.728 43.478 0.00 0.00 0.00 4.12
2804 3714 3.371917 CCAAGGACAAATATCAGAGCCCA 60.372 47.826 0.00 0.00 0.00 5.36
2805 3715 3.217626 CCAAGGACAAATATCAGAGCCC 58.782 50.000 0.00 0.00 0.00 5.19
2806 3716 3.217626 CCCAAGGACAAATATCAGAGCC 58.782 50.000 0.00 0.00 0.00 4.70
2807 3717 3.629398 CACCCAAGGACAAATATCAGAGC 59.371 47.826 0.00 0.00 0.00 4.09
2808 3718 4.848357 ACACCCAAGGACAAATATCAGAG 58.152 43.478 0.00 0.00 0.00 3.35
2809 3719 4.324254 GGACACCCAAGGACAAATATCAGA 60.324 45.833 0.00 0.00 0.00 3.27
2810 3720 3.947834 GGACACCCAAGGACAAATATCAG 59.052 47.826 0.00 0.00 0.00 2.90
2811 3721 3.332187 TGGACACCCAAGGACAAATATCA 59.668 43.478 0.00 0.00 40.09 2.15
2848 3758 2.609459 CGTTGGTCATGAAGGCATAGTC 59.391 50.000 0.00 0.00 32.27 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.