>input_sequence_66546
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----------------------------------ATGGCGCCGGCTCCC------ATTCGAGCTATTGCGGTGGTGCTGC
TCACGTTCGTCTGCTGTGGGTGTGCCATGGCCGCGGACAAAGCACCCATCAAATGGTTGAGGGCGCACGCGACGTTCTAC
GGCGGCGCCGATGCATCTGACACCATGGGTGGAGCGTGCGGGTATGGTAACCTGTACTCGGCGGGGTACGGTACGCGGAC
GGCGGCGCTGAGCACGGTGCTGTTCAACGACGGTGCGGCGTGTGGGCAGTGCTACAAGATCGCGTGCGACCG--CAAGCT
CGCAGATCCCATGTGGTGCAAACCAGGCGTCTCGGTGACGGTGACGGCCACGAACTTCTGCCCACCTAACAACGCGCTCC
CGAGCGACAATGGCGGCTGGTGTAACCCACCGAGGCCACACTTTGACATGGCGCAACCGGCATGGGAGAAGATCGGCGTT
TACAAGGGCGGCATCATCCCCGTCATGTACAAGAGATACGC----ACGCATAAGTTTTCTTAAAAAATTGTA----A-TT
ATCCTCAAAAGTTAAAATTGCTTAAAGTTGGTAGAAAATTGATTTTTCTGTAGGGTCCCGTGCGTGAAGAAGGGTGGGGT
GCGGTTCAAGATCGATGGTCATGATTATTTCAACCTAGTTACTGCGATGAACGTCGCAGCTGCCGGCTCAATCAAATCCA
TGGATGTCAAGAGCTCTGATTCAAACGATTGGATGCCAATGTCCCGTAACTGGGGTGCCAACTGGCACTCTCTAGCAAAT
CTTACCGAAAAATTGCTCTCGTTCAGGTTGACCGACACAGATGGGCAGACAGTTGAGTTCAACAATATTGTGCCTGCTGG
ATGGAAGTTTGGGCAAACATTTGCAAGCAAACAACAGTTC-AAGTGA---------------------------------
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>chr3A_1_TraesCS3A01G160100
TAGGCAAATAAGGTGTTTTAAAGATATTTCATTGTAATTCTTAATCGTAGGAGTTACTTT--ATTTTTTTAGATTTTAGA
TCCAAATCACTATACCTGTAATTTTATTTATACTCATAACAATTACGGGTGTTTTTTGAAAAACAAACCTCAAACGTTCG
TCGGAGGGTGCCTTCACGAGCGAACGAATCGTTCGTTCGAGGGCAGCCCCTAGCTGACGTCCCACTGATATTAGGTCCAT
GTTATTTAAAGTTCATCAAAAGAAATACAGTTTTGCAACCATAATCGAATTATCAGCTCTGGGGACAGATGAAACTTAAC
GGACCCTGCATCTAAACCGGATGGATTCAACTCTTTAGGTCTTCCTTGAGGGTAACTCAATGTTTCTTGAACTAATCATT
ACTTGACGATGGGCGCCGT-CGATGTTGTGGAGTAGGTGTAGTGCAGGATCAGCCGTACGATTTGAGGAACATACTACGA
G-------------------------ACGCGAACATGAACATCCCAAGGTATCCATC----AAGTCAA--GCAAATATCC
TCCCAAG-------GTGAAAACGTCAAGCATACACATCTGAAAATCGCAAAACGCCGCCTATTTCTTCTGAAAGTGTCAA
----AAATCGTCTCTAGATGTCTGTCATTGACACTGTATGAAGCAAAGATCGAGAAGAACCAA------------TGTTA
AAATATAAACTAACGACCATACAAGG----AGAAACAATACGTGTCTGCGCGTATATAAAATCTTGGGATTAGTCCATAA
GCCATGGTGCGGCTGCACATGTG-------CACGCTACCCGCATCATTCATTCGTGGTGACCTTGCCCACTCTCCCAAGC
TACGGATCAATCAAAGGG-AAGGC-TATATAAACACACAGGATCATCACAAGATCATAACACATCTAGCCA---GAAGCA
AATCCCCATTGGAGAACACGATCAAACAGATAAGCAAAGAACACACAGCTCCCAGA-TCGGCTCCGTGCAGATAAGTTTG
AAGCGGCATCCTGCATCCATCGATAGAAATCGACATGGCGCCGGCTCCC------ATTCGAGCTATTGCGGTGGTGCTGC
TCACGTTCGTCTGCTGTGGGTGTGCCATGGCCGCGGACAAAGCACCCATCAAATGGTTGAGGGCGCACGCGACGTTCTAC
GGCGGCGCCGATGCATCTGACACCATGGGTGGAGCGTGCGGGTATGGTAACCTGTACTCGGCGGGGTACGGTACGCGGAC
GGCGGCGCTGAGCACGGTGCTGTTCAACGACGGTGCGGCGTGTGGGCAGTGCTACAAGATCGCGTGCGACCG--CAAGCT
CGCAGATCCCATGTGGTGCAAACCAGGCGTCTCGGTGACGGTGACGGCCACGAACTTCTGCCCACCTAACAACGCGCTCC
CGAGCGACAATGGCGGCTGGTGTAACCCACCGAGGCCACACTTTGACATGGCGCAACCGGCATGGGAGAAGATCGGCGTT
TACAAGGGCGGCATCATCCCCGTCATGTACAAGAGATACGC----ACGCATAAGTTTTCTTAAAAAATTGTA----A-TT
ATCCTCAAAAGTTAAAATTGCTTAAAGTTGGTAGAAAATTGATTTTTCTGTAGGGTCCCGTGCGTGAAGAAGGGTGGGGT
GCGGTTCAAGATCGATGGTCATGATTATTTCAACCTAGTTACTGCGATGAACGTCGCAGCTGCCGGCTCAATCAAATCCA
TGGATGTCAAGAGCTCTGATTCAAACGATTGGATGCCAATGTCCCGTAACTGGGGTGCCAACTGGCACTCTCTAGCAAAT
CTTACCGAAAAATTGCTCTCGTTCAGGTTGACCGACACAGATGGGCAGACAGTTGAGTTCAACAATATTGTGCCTGCTGG
ATGGAAGTTTGGGCAAACATTTGCAAGCAAACAACAGTTC-AAGTGATCATT-CTCCGGTGATCAATTTAGAATATGATT
GGTTCATAAATGTACCATCATACGTACATTGTAGCAATATTGTTGAATTTAATT-ATTTGTGTCATGGTGTTTAATTACA
TTAATTTTATGCAGTTCTTGTATATACGCTACATCAATTCATT-GATAAAGGCATGTAACATGCTTGTATGTGATTAACT
TGTTCTATGTTTTTATGTTTAC----------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------ATAAAGTTGGATGGTGTACATAAAGTATGGCTGATTCTACCGAGTTTCATCTAATG
TATATTTTTTTATACTTGTGGAAACCAACATTTACAAAAATGTAAGTCAA-ATGGTCGTGTGCATAATATTGATACAGAG
GCTGGGGTGACCCTCCTTTCCAAAGAAACAATATAAGGCTATATATAGCAGGGTCAGTTAGTCTTTAGACATTTAACACA
AGAATGTACACATACTAATCAAGGGAAGACAACGGAATGTGATCGGAGGATTTTT-------CTCGAAAAGCAGGACAAC
CCACGGGCT-TTGCATCGAGCGATGCACACAGTTGTCTTTATTGCATTATTCAACAAGGCCTTACAAAATAAATACACAA
GTTGATGAAAAATCAGTTTGTGTTTGCTAATGTCTTTGAGTTCGAGTTCTCACGTTTTTTTAAGTTCAATACATGTAGTA
TGTTGTCCACAGAAAGCACAATACACCGGAAACATACTGTTAGGAAATCCCAAAGAAAGCAAATCATCTG---GTGGATA
CAAGAAACTCATTTTTCACTAGTAGTACATGACCGTTAGATCACCATAAATATGTCACACATATCTCATCCATCAGATCA
CCATACTTGTGTTTAAAAAAAATCACAATCACTGATTCTAAATAAATAAATTATGTATATGCTATCTGTGGTACCTCCCT
CCAATCTTTGTGCAAGGTCTCTTACCAGACCTTTGGGCTCTGATATTTGTCCTTGGGTGTCCAAGGTGGTCAAATGCGAC
TATGCCTTCATGACCAACGAAAAG
>chr3D_4
---GCAAAGAAGATGTTTTAAAGATATTTTATTGTAATTCTTAATCATAAGAGTTACTTTGTATTTTTTTATATTTTAGA
TCCAATTCAGTATACCTATAATTTTATTTATACTGATAACAATTGCAGGTGTTTCTTAGAAAACAAACCTGAAACGTTCA
TTGGAGGGTGCCTTCACGAGCGAACGAATCGTTCGTTCGAGGGCAGCCCCTAGCTGACGTGGCCCTGATATTAGGTCCAT
TCTATTTAAAGTTCATCAAAAAATA-------TTGCAACCATAATCGAATTATCAGCTCTGATGACAGATGAAACTTAAC
GGACCCTGCATGTAAACCGGATGGATTCAACTCTTTAGGTCTTCCTTGAGGGCAACTCAATGTTTCTTGAACTAATCATT
ACCTGACGATGGGCACCGT-CGATGCTGTGGAGTAGGTGCAGTGCAGGATCAGCCGTACGATTTGAGGAACATACTACGA
GACATCCTTTCGTAGCCAAGGGGCGAACGTGAACATGAACATCCCAAGGTAGGCATCAAGAAAGTCAA--GCAAATATCC
TCCCAAG-------GTGAAAACGTCAAGCATACACATCTGAAAATCGCAAAACGCCGCCTGTTTCTTCCGAAAGTGTCAA
----AAATCGTCTCTAGATGTCTGTCATAGACACTGTATGAAGCAAAGATCGATAAGAACCAACCGATGATATAATATTA
AAATATAAACTAACGACCATACAAGG----AGAAACAATACGTGTCTGCGCGTATATAAAATCTTCGGATTAGTCCATAA
GCCATGGTGCGGCTGCACATGTG-------CACGCTACCCGCATCATTCATTCGTGGTGACCTTGCCCACTCTCTCAAGC
TACGGATCAATCAAAGGG-AAGGC-TATATAAACACACAGGATCATCACAAGATCATAACACATCTAGCCATAAGAAGCA
AATCCCCC-TTGAAGCAC----------GATAGGCAAAGAACACACAGTTTCCAGA-TCAGCTCCCTACAGATAAGTTTG
TGGCGGCGTCCTGCATCCATCGATAGATATCGAAATGGCGCCGGCTCCC------GCTCGAGCTATTGCGGTGGTGCTCC
TCACGTTCGTCTGCTGTGGGTGTGCCATGGCCGCGGACAAAGCACCCATCAAATGGCTGAGGGCGCACGCGACCTTCTAC
GGCGGCGCCGATGCCTCTGACACTATGGGTGGAGCATGCGGGTACGGTAATCTGTACTTGGCGGGGTACGGTACGCGGAC
GGCGGCACTGAGCACGGTGCTGTTCAACGACGGTGCGGCATGTGGACAGTGCTACAAGATTGCATGCGATCG--CAAGCT
GGCAGATCCGATGTGGTGCAAACCAGGCGTCTCGGTGACGGTGACGGCCACGAACTTCTGCCCGCCTAACAACGCGCTCC
CGAGTGACAATGGCGGCTGGTGCAACCCACCGAGGCCACACTTTGACATGGCGCAACCGGCATGGGAGAAGATCGGCGTT
TACAAGGGCGGCATCATCCCTGTCATGTACCAGAGGTATGC----ACGAATGAGTTTTCTTAAAAAATTGTA----G-TT
TTCCTCAAAAGTT-AAATTGCTTAAAGTTGGTA-GAAATCGATTTTTCTGTAGGGTCCCGTGCATGAAGAAGGGTGGGGT
GCGGTTCAAGATCGATGGTCACGATTACTTCAACCTAGTTACTGTGATGAACGTCGCAGCCGCCGGCTCGATCAAATCCA
TGGATGTCAAGAGCTCCGATTCAAACGATTGGATGCCAATGTCTCATAACTGGGGTGCCAACTGGCACTCTCTAGCAAAT
CTTACCGGAAAAATGCTCTCGTTTAGGTTGACTGACACGGATGGGCAAACAGTTGTGTTCAACAATATTGTGCCTGGTGG
ATGGAAGTTCGGGCAAACATTTGCAAGCAAACAACAGTTC-AAGTGATCATT-CTCCGGTGATCAATTTAGAATATGATT
GGTTCATGAATGTAC---CATACGTACATTGTAGCAATATTGTTGAATTTAAGTTATTTGTGTCCTGGTGTTCAATTACA
TTAATTTTATCCAGTTCTTGTATATACATGACATCAATTCATT-AATAAAGGCATGTAACATCCTTGTATGTGATTAACT
TGTTCTATGTTTTTATGTTTATATATGAGTTCTTTTACAGTACCCTTAAATGAATATAGGCCCTCCATTTGATATAATCT
GATGGACAGGATTGGTTGGTACTCCAACATACTCCATCCGTTTCAAAATAGATGACCCAACTTTATACTAACGGAGGAAG
TAGATGTTTAGGAGTACCACCGCCAAAAATTGGGGAGTACCTTGATTTTAAGGGTAAATTGGTAATCTATATGTAGCAAT
TAAGTTGGAAACTACTCCCTCCGGACAGCAGTTGCGGTAATTACGAGATTTGACTGCATGCAGCGCGAACCGGCCGGCAA
GGGACTCGTTAGCCAATAAACTACGGATGCATCATCCGAAAGTCATGGCTCCTTCGTGATTAAATCAACGCATGAGAGAT
GCACACAAAAAAAACGAAACGTGATGTCGATAATCAATATTTACAACATTCCAATTTTTTTAGAAGATGCCAAAGAACTT
TTAGAAAGGAGACTGCTCCTTTATGCATGTCCCGTCCAAGGGCTGGGATACGATGGAGATCGGCCTCGCCGGCGGCCGAG
GCGCCATGTTTTCATGGGTGTCGAAGTAGGAGCACAAGCCAGGGGAGGAGAAGGCAGCCACGGCTATGCGAGATAAGGGA
GACGACGGTTTGCGCTTGATCGGGAAATCAGGGGAAATTAGTAGGCCCAGAGAATACATCAAAAGATCGCCCTTAGATGA
AAGAAAAAAAGACTGAAGTACCCTCTCAAACAAACGGCCAGATCTAATTTGTACTCCCAGCCCTGCCTATGGAGTATGAG
GGTACTGTAAAAAAAACCTCTTATATATATTTGAATGGTGTACATAAAGTATGACTGATTCTACCGAGTTTCGTCTAATC
TATATTTT-GTATACTTGTGGAAACCAACATTTATAACAATATAAGGCAAAATGGTTGCG---------ATGATGCAGAG
GCTGGGGTGAACCCCTTTTT-GAAGAAACAATATAACGCGATATATAGCAGCTT--GTTAGTCTTTAGACATTTAACACA
GCAGTGTACATATACTAATCAAGGGAAGACAACGGAATGTGGTCGGATGATTTTTTTTTTCTCTCGAAAAGAAGGACAAC
TCCCGGGCTTTTGCATCGAGTGATGCACACAATCATCTTTATTGCATTATTCAACAAAGCCTTACAAAATAAATACACAA
GCTGATAAAACATCAGTTTTTGTTTGCTAATGTCTTTGAGTTCAAGTTCTCGCTTTTCTTTAAGTTCAATACATGTCATA
TGTTGTCCACAAAAAGCACAATACATCAGAAAAATACTGCTAGAAAATCCCAAAGAAAGCAAATCATCTAACCGTGGATA
CCAAAAACTCTTTTTTCGCTAGTAGTCCATAACCATTAGATCACCATAAATATGCCACACATATCTC---CATTAAATTA
CCGTAATTTTGCTTGC-AAAAATCACAATCACTGGTTCTAAATAAACAAATTATCTATATGCTATCTGTGGTACCTCCCT
CCAATCTTTGTGCAAGGTATCTTACCA--------------GATATTTGTCCTTGGGTGTCCAAGGTGGTCAAATGCAAC
TATGCCTTCATG------------
>chr3B_379
TG------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------TTTTTGAACTAATCATT
ACCTGACGATGGGCGCCGT-CGATGTTGTGGGCCAGGTGCAGTGCAGGATGAGCCGTACGATTCGAGGAACATA---GGA
GACATCCTTTCGTAGACAAGGGGTGCAGCCGAACATGGACATCCCAAGGTAGGCGCCAAGAAAGTCAATATCAAATATCC
TCCCTTAATTAAAAGTGAAAACGTCAAGCATACACATCTGAAAACCGCAAAACGCCGCCTATTTCCTCCGAAAGCGTCAA
GCAAAAATCATCTCTAGATGTCAGTCGTAGACACTGCCTGAAGCAAAGATCAATAAA---CAACCAGTGATATAATGCTA
ACTTCTAAACTAACGATGATATTATAAGGAAAAA-CAGTACGTGTCTG-----------------CGGATTAGTCCATAA
GCCATGGTGCGGCTGCACATGTG-------CACGCTACG-GCATCATTAATTCGTGATGACCTTGCTGACTCTCTCAAGC
TATGGATCAATCACGAGCAAAGGC-TATATAAACACACATGATCATCACAACATCATCACACATCTAGCCATCAGAAGCA
AATCCACC-TGAAGCACACGAACAAACAGATAGGCAAAGAGCACACAGCTCCCAGATTCAGCTCCGCACAGATAAGTTTG
AAGCGGCATCCTGCATCCATCGATAGATATCGACATGGCGCCGGCTCCC------GCTCGAGCTATTGCGGTGGTGCTGC
TCACGTTCGTCTGCTGTGGGTGTACCATGGCCGCGGACAAAGCACCGATCAAATGGCTGAGGGCGCACGCGACGTTCTAC
GGCGGCGCCGATGCCTCTGACACCATGGGTGGAGCGTGCGGGTATGGTAACCTGTACTCGGCGGGGTACGGTACGCGGAC
GGCAGCGCTGAGCGCGGTGCTGTTCAACGATGGTGCGGCATGTGGACAGTGCTACAAGATCGCATGCGACCG--CAAGTT
GGCAGATCCGATGTGGTGCAAACCAGGCGTCTCAGTGACGGTGACGGCCACGAACTTCTGCCCGCCTAACAACGCACTTC
CGAGCAACAATGGCGGCTGGTGCAACCCGCCAAGGCCACACTTTGACATGGCGCAACCGGCCTGGGAGAAGATTGGCGTT
TACAAGGGCGGCATCATCCCCGTCATGTACCAGAGGTACAC----ATGCATGAGTTTTCCTAAAAGATTGTA----G-TT
TTTCTCAAAAGTTAAAATTGCTTAAAGTTGGTAGAAAATCAATTTTTCTGCAGGGTCCCATGCGTGAAGAAGGGTGGGGT
GCGGTTCAAGATCGAAGGCCACGATTACTTCAACCTAGTTACCGTGATGAATGTCGCAGCCGCTGGCTCGATCAAATCGA
TGGATGTCAAGAGCTCTGATTCAAACGACTGGATGTCAATGTCCCGTAACTGGGGTGCCAACTGGCACTCTCTAGCAAAT
CTTACCGGGAAAATGCTCTCGTTCAGGTTGACTGACACGGATGGGCAGACGGTTGAGTTCAACAATATTGTGCCTGGTGG
ATGGAAGTTCGGGCAAACATTTGCAAGCAAACAACAGTTC-AAGTGATCATT-CTCCGGTGATCAATTTAGAATATGACC
GGTTCATGAACATAC---CATATTTACATTGTAGCAATATTGTTGAATTAAATTTATTTGTGCCCTGGTGTTCAATA--A
TTAATTTTATCCAGATCTTGTATATACGCTACATCAATTCATT-AATAAAGGCATGTAACATCCTTGTATGTGATTAACT
TGTTCTATGCTTTTATGTTTATATA-------------------------------------------------------
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---------------------------AATTTGAATGGTGTACATAAAGTATGACTGATTCTACCGAGTTTCAACTAATG
TATA-CTTTGTATACTTGTGGAAACCAACATTTATAACATTATAAGGCAAAATGGTTGCATGCATAATAATGATGCAGAG
GCTAGGGTGAACCCCCTTTCCGAAGAAACAATATAAG-CGATATATAGCAGCTTCATTTAGTCTTTAGACATTTAACACA
ACAATGTACATATACTAATCAAGGGAAGACAACGGAATGTGATCGGATGGTTTTCTCTCTCTCTCGAAAAGGAGGACAAC
CCCAGG-CT-CTGCATCGAGCGGTGCGCACAATTATTTTTATTTTATTATTCAACAAGGCCTTACAAAATAAATACACAA
GCTGATGAAACATCAGTTTGTGTTTGCTAATGTCTTTGAGTTCAAGTTCTCACTTTTCTTGAAGTTCAATACATGTAATA
TGTTGTCCACATAAAGCACAGTACATCAGAAAAACACTGCTAGAAAATCCCAAAGAAAGCAAATCATCTTACCGTGGATA
CAAGAAACTCTTTTCTCACTAGTAGTCCATGACCATTAGATCACCATAA------CACACATATCTCATCCATTAAATCA
ACATAACTGTCCTTAG--AAAATCACAATCACTGGTTCTAAATAACTAAATTATCTATATGCTATCTGTGGTACCTCCCT
CCAATCTTTGTGCAAGGTATCTTACCA--------------GATATTTGTCCTTGGGTGTCCAAGGTGGTCAAATGCAAA
TATGACTTCATGACCAACGAAAAG
>chr4D_379
TG------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------------------------------TTTTTGAACTAATCATT
ACCTGACGATGGGCGCCGTTCGATGTTATGGACCAGGTTTAGTGCAAGATCAGCCGTACGATTGGAGGAACATA---CGA
GACATCCTTTTGTAGACAAGGGACGCAGCCGAACATGGACATCCCAAGGTAGCCGTCAAGAAAGTCAA--TCAAATATCC
TCCCTTAAAAA----TGAAAACGTCAAGCATACATACTTGAAAATCGCAAAACGCCGCCTATTTCCTCGGAAAGCGTCGA
GCAAAAATCATCTCTAGATGTCAGTCGTAGACACTGTGTGAAGCAAAGAACGATAAA---GAACCAGTGATATAATGCTA
AAATATAAACTAACGATGATATTATAAGAAAAAAACAATACGTGTCTG-----------------CGGATTAGTCCAGAA
GCCATGGTGCGGCTGCACATGTG-------CACGCTACG-GCATCATTAATTCGTGATGACCTTGCTGACACTCTCAAGC
TATGGATCAATCACAAGCAAAGGCTTATATAAACACACATAATCATCACAACATCATCACGCATCTAGCCATCCGAGGCA
AAC-CCCC-TGAAGCACACGAACAAACAGATAGGCAAAGAACACACAGTTCCCAGA-TCCGCTCCGTGCAGATAAGTTTG
AAGCGGCATCCTGCATCCATCGATAGATATCGACATGGCGCCGGCTCCAGCTCCAGCTCGAGCTATTGCGGTGGTGCTAC
TCACGTTCGTTTGCTGTGGGTGTGCCATGGCCGCGGACAAAGCACCGATCAAATGGCTGAGGGCGCACGCGACCTTCTAC
GGCGGCCCCGATGCCTCTGACACTATGGGTGGAGCATGCGGGTATGGTAATCTGTACTCGGCGGGGTACGGTACGCGGAC
GGCGGCGCTGAGCACGGTGTTTTTCAATGACGGTGCGGCATGTGGTCAGTGCTACAAGATCGCGTGCGACCGCACAAGCT
GGCATATCCGATGTGGTGCAAACCAGGCGTTTCGGTGACGGTCACGGCCACGAACTTCTGCCCGCCTAACAACGCGCTCC
CGAGCGACAATGGCGGCTGGTGCAACCCACCGAGGCCACACTTTGACATGGCGCAACCGGCCTGGGAGAAGATCGGCGTT
TACAAAGGTGGCATCATCCCCGTCATGTACCAGAGGTACGC----ACGCATGAGTTTTCTTAAAAAATTGTA----GGTT
TTTCTCAAAAGTTAAAATTGCTGAAAGTTGGTAGAAAATCGATTTTTCTGTAGGGTCCCCTGCATGAAGAAGGGTGGGGT
GCGGTTCAAGATCGATGGTCACGATTACTTCAACCTAGTTACTGTGATGAACGTCGCAGGCGCCGGCTCGATCAAATCCA
TGGATGTCAAGAGCTCTGAATCAAACGATTGGATGCCAATGTCCCATAACTGGGGTGCCAACTGGCACTCTCTAGCAAAT
CTTACCGGAAAAATGCTCTCGTTCAGGTTGACTGACACGGATGGACAGACAATTGAGTTCAACAATATTGTACCTGGTGG
ATGGAAGTTCGGGCAAACATTTGCAAGCAAACAACAATTC-AAGTGATCATT-CTCCGGTGATCAATTTAGAATATGATT
GGTTCATGAATGTAC---CATACGTACATTGTAGCAATATTGCTGAATTTAATTTATTTGTGTCGTGGTGTTCAATTACA
TTAATTTTATCCACTTCTTGTATATACGCTACATCATTTCATT-AATAAAGGCATGTAACATCCTTGTATGT--------
------------------TTATATA-------------------------------------------------------
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---------------------------AATTTGAATG-TGTACATAAAGCATGACTGATTCTACCGAGTTTCATCTAATG
CATA-TTTTGTGTACTTGTGAAAGCCAACAT----AACAATATAAGGCAAAATGGTTGAGTGCACAATAATGATGCGAAG
GCTGCGGTGAACCCCCTTTCCCAA---ACAGTATAACGCGTTATATATCAGCTTCAGTTAGTCTTTAGACATTTAACACA
ACAATGTACATATACTAATCAAGGGAAGACAAGGGAATGTGATCGGATGAA--TTTTTTTCCCTCGAAAAGGAGGACAAC
CCCTGG-CT-CTGCATCGAGCGATGCACACAATCATCTTTA---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------
>chr3A_546
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------AGCATACACATCTGAAAATCGCAAAACGCCGCCTATTTCCTCCGAAAGCATGAA
GCAAAAATCATCTCTAGATGTCAGTCGTAGACACTGTGTGAAGCAAAGAGCGATAAA---GAACCAGTGATATAATGCTA
AAATATAAACTAACGATGATATTATATGGAAAAAACAGTACGTGTCTG-----------------CGGATTAGTCCATAA
GCCATGGTGCGGCTGCACATGTGACATGTGCACGCTACG-TCATCATTAATTTCTGATGACCTTGCTGACTCTCTCAAGC
TATGGATCAATCACGAGCAAAGGC-TATATAAACACACAGGATCATCACAACATCATCACACATCTAGCCATCCTAGACA
AACACCCC-TGAAGCACACGAACAAACAGATAGGCAAAGAAC-------TCCCAGA-TCAGCTCTGCACAGATAAGTTTG
AAGCGGCATCCTGCATCCATCGATAGATATCGACATGGCGCCGGCTCCC------GCTCGAGCTATTGCAGTGGTGCTGC
TCACGTTCGTCTGCTGTGGGTGCGCCATGGCCGCGGACCAAGCACCGGTCAAATGGCTGAGGGCGCACGCGACCTTCTAC
GGCGGCGCCGATGCCTCTGACGCTATGGGTGGAGCATGCGGGTACGGTAATCTGTACTCGGCGGGGTACGGTACGCGGAC
GGCGGCGCTGAGCACGGTGCTGTTCAACGACGGTGCGGCATGTGAACAGTGCTACAAGATCACATGCGACCG--CAAGCT
GGCAGATCCGATGTGGTGCAGACCAGGCGTCTCGGTGACGGTGACCGTCACGAACTTCTGCCCGCCTAACAACGCGCTTC
CGAGCGACAACGGCGGCTGGTGCAACCCGCCGAGGCCACACTTTGACATGGCGCAACCGGCCTGGGAGAAGATCGGCGTT
TACAAGGGCGGCATCATCCCCGTCATGTACCAGAGGTACGTAGG---GCATGAGTTTTTTAAAGGAAGAACCAATTG-TT
TTTCTTGAAAGTAAAAATTGCTTAAATTTGGTATGAAATCGATTTTTCTGCAGGGTCCCATGCGTGAAGAAGGGTGGGGT
GCGGCTGAAAATCGATGGTCATGATTACTTCAATCTAGTTACTGTGATGAACGTCGCAGCTGCCGGCTCAATTAAATCGA
TGGATGTCAAGAGCTCTGATTCAAATGATTGGATGCCAATGTCCCGTAACTGGGGTGCCAACTGACACTCTCTAGCAAAT
CTTACTGGTAAAATGCTCTCATTCAGGCTGATTGACACAGATGGACAGACAATCGAGTTAAAGAATATTGTGCCCGGTGG
ATGGAAGTTCGGACAAACATATGCAAGCAAACAACAGTTC-AAGTGATCATTTCTCCGGTGATCACTTTAGAATATGATT
GGTTAATGAACGTACCATCATACGTATATTGTAGCAATATTGTTCAATTTAATTTATTTGTGTGGTGGTGCTCAATTACA
TTAATTGATCCACTACTTTGTATATAAATTACATCGATTCATTTGATAAACACATGTAACATCCTTGTATGTGCTTAAGT
TGTTCTAAT--------TTTATATA-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------AATTTAGATGGTGTCCACAAAGTACGATGA---CTACCGAGTTACATCTAATG
T-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------
>chr4D_1148
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------GGTGGGGCGTGTGGGTACGGCAACCTGTACTCGGCGGGCTACGGGACGCGGAC
GGCGGCGCTGAGCCAGGTGCTCTTCAATGACGGCGCGGCCTGCGGGCAGTGCTACAAGATTGCTTGTGACCG--CAAGCT
TGCGGACCCGATGTTCTGCAAACCAGGCGTCACGGTGACAATCACGGCCACGAACCTCTGCCCGCCTAACTATGCACTCC
CGAGCGACAACGGAGACTGGTGCAATCCGCCGATGCCGCACTTCGACATGGCGCAGCCGGCCTGGGAGAAGATTGGTGTC
TACAAGGGTGGCATCATCCCTGTCATGTACCAGAGGTACATACCTACACATGAGTATTTATCACTGTTATATGTGCCTGT
--------------------GTGCAAGTTACTAAAACCG----TTTTTTGCAGGGTTCCATGCGTGAAGAAGGGTGGGGT
GCGGTTCAAGATAGCTGGTCACCATTATTTTAACCTAGTTAACGTGTTCAACGTCGCAGCGGACGGCTCGATCAAATCGA
TGGATGTCAAGAGCTCTGATTCAGACACATGGGCGCCAATGGCTCGCAACTGGGGCGCGAACCGGCAATCTCTAGCTAAT
CTTACTGGAAAGATGCTCTCATTCAGATTGACCAGCACGGATGGGCGGACACTTGTGTTTAACAATATTGTGCCAGCTGG
ATGGACATTAGGGCAAACATTTGCGAGCAAATTACAGTTTTAATTGAACATT-CTC------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------
>chr4A_1148
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------GGTGGGGCGTGTGGATACGGCAACCTGTACTCGGCGGGCTACGGGACGCGGAC
GGCGGCGCTGAGCCAGGCGCTCTTCAACGACGGCGCGTCATGCGGTCAGTGCTACAAGATTGCTTGTGACCG--CAAGCT
TGCGGACCCGATGTTCTGCAAACCCGGTGTCACCGTGACAATCACGGCCACGAACCTCTGCCCGCCTAACTATGCACTCC
CGAGTGACAATGGAGGATGGTGCAATCCTCCGAGACCGCACTTCGACATGGCGCAGCCGGCCTGGGAGAAGATTGGTGTC
TACAAGGGTGGCATCATCCCTGTCATGTACCAGAGGTAG----CTACAGATGAGTATTTACCACTGC--TATGTGCCTGT
--------------------CTGCAAGTTACTAAAACCA----ATTTTTGCAGGGTTCCATGCGTGAAGAAGGGTGGGGT
GCGGTTCAAGATTGCTGGTCACGATTATTTTAACCTAGTTAACGTGTTCAACGTCGCAGCTGACGGCTCGATCAAATCCA
TGGATGTCAAGAGCTCTGACTCAGACACATGGGCGCCAATGACTCGTAACTGGGGCGCGAACTGGCAATCTCTAGCTAAT
CTTACCGGGAAGATGCTCTCATTCAGATTGACCAGCACGGATGGGCGGACGCTTGTGTTTAACAATATTGTGCCGGCTGG
ATGGACATTTGGGCAAACATTTGCGAGCAAATTACAGTTTTAATTGAACACT-CTC------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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------------------------
>SNPs
-SS-----S---S----------------S----------------S--S---------------------S--------
-----S---S-------S----------------S---------S-S-------S--SS-----------S--------S
-S----------------------------------------------------------SS-S----------------
SS-------------------S-S-SSSSSSS-----------------------------SS-----------------
-----------S----------------------------------------S---------------------------
--S-----------------------------------------------------------------------------
---------------------------------------------------S----------------------------
--------------------------------------------------------------------S-----------
----------------------------S------------------------S--------------------------
-----------------------------------------------------------------S--------------
--------------------------------------------------------------------------S-----
--------------------------------------------------------------------------------
-------SS-----S------S----------S--------------------------S--------------------
---------------------------S---------------------------SS-----------------------
--------------------------------------------------------S-----------------------
--------------S-----------------------------------------------------------------
---------------------------------------S----------------------------------------
S--------S-----------------------------------------------------S----------------
----------------------S---------------------------------------------------------
------------------------------S----S---------------S------------------------S---
S--------------------------------------S----------------------------------------
--------------------------------------------S-----------------------------------
--------------------------------------------------------------------------------
-------S----S-------------------------------------------------------------------
--------------------------------------------------------------------------------
-------S--------------------------------------------------------S-------S-------
----------S---------------------------------------------------S-----------------
---------------------S----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------S-----------------------S--------------------------
---------S------------------------S--S---S----S---------S-S----------S----S-----
----------S--S-------S-----------------S-----------SS---------------------------
-S--------S------------------------------------S-----------------------S--------
--S----------------------------S--S---------------------------------------------
-S--------S--------------------------------S---------S---S-------------------S--
-----------S-------------S-S----S------S---S-------------------------S----------
----------S---------------S-------S-------------------S------------------S-S----
-----S-----S---SS-----------------S-------------------S-------------------------
------------------S--------SSSSSSSSSSSSSS------------------------------------S--
------------------------
>forward_1020
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------AACACACAGCTCCCAGATCG--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------
>reverse_3110
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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---------------------------------------------------------------------TTGATACAGAG
GCTGGGGTG-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------
