Multiple sequence alignment - TraesCS3A01G155800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G155800 chr3A 100.000 3634 0 0 1 3634 149563270 149566903 0.000000e+00 6711.0
1 TraesCS3A01G155800 chr3D 89.230 2739 135 68 660 3332 134830459 134833103 0.000000e+00 3277.0
2 TraesCS3A01G155800 chr3D 90.476 42 4 0 275 316 83492152 83492111 5.070000e-04 56.5
3 TraesCS3A01G155800 chr3B 95.746 1340 33 9 1649 2981 191137290 191138612 0.000000e+00 2137.0
4 TraesCS3A01G155800 chr3B 91.923 780 44 10 736 1512 191136299 191137062 0.000000e+00 1074.0
5 TraesCS3A01G155800 chr3B 91.385 592 41 8 1 592 191128972 191129553 0.000000e+00 802.0
6 TraesCS3A01G155800 chr3B 100.000 82 0 0 660 741 191131652 191131733 6.280000e-33 152.0
7 TraesCS3A01G155800 chr4D 78.981 314 62 4 2271 2582 499618655 499618344 1.020000e-50 211.0
8 TraesCS3A01G155800 chr4D 90.741 54 4 1 3532 3585 441832019 441831967 1.810000e-08 71.3
9 TraesCS3A01G155800 chr2D 80.147 136 25 2 2415 2549 474898726 474898592 2.310000e-17 100.0
10 TraesCS3A01G155800 chr2A 77.206 136 29 2 2415 2549 617441427 617441293 1.080000e-10 78.7
11 TraesCS3A01G155800 chr5B 79.646 113 11 6 36 148 70392244 70392344 1.810000e-08 71.3
12 TraesCS3A01G155800 chr5B 97.222 36 1 0 117 152 684114942 684114977 1.090000e-05 62.1
13 TraesCS3A01G155800 chr5A 82.609 69 11 1 36 103 331940850 331940918 3.920000e-05 60.2
14 TraesCS3A01G155800 chr5A 100.000 29 0 0 2993 3021 573652756 573652728 2.000000e-03 54.7
15 TraesCS3A01G155800 chr6D 76.800 125 15 7 36 148 426078357 426078479 1.410000e-04 58.4
16 TraesCS3A01G155800 chr5D 92.500 40 3 0 117 156 60252787 60252748 1.410000e-04 58.4
17 TraesCS3A01G155800 chr1A 97.059 34 1 0 119 152 181772742 181772709 1.410000e-04 58.4
18 TraesCS3A01G155800 chrUn 76.119 134 17 9 36 154 96471160 96471027 5.070000e-04 56.5
19 TraesCS3A01G155800 chr4B 92.308 39 3 0 117 155 134362405 134362367 5.070000e-04 56.5
20 TraesCS3A01G155800 chr1B 97.059 34 0 1 116 148 17525364 17525331 5.070000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G155800 chr3A 149563270 149566903 3633 False 6711.0 6711 100.0000 1 3634 1 chr3A.!!$F1 3633
1 TraesCS3A01G155800 chr3D 134830459 134833103 2644 False 3277.0 3277 89.2300 660 3332 1 chr3D.!!$F1 2672
2 TraesCS3A01G155800 chr3B 191136299 191138612 2313 False 1605.5 2137 93.8345 736 2981 2 chr3B.!!$F2 2245
3 TraesCS3A01G155800 chr3B 191128972 191131733 2761 False 477.0 802 95.6925 1 741 2 chr3B.!!$F1 740

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
776 2840 0.597568 CTCTTTTGCACCGCATGGAA 59.402 50.0 0.0 0.0 38.76 3.53 F
1282 3359 0.251165 GGGCACACACACCTACCAAT 60.251 55.0 0.0 0.0 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1798 3994 0.025001 GACGATCGTGCCATCAAACG 59.975 55.0 28.12 0.0 41.11 3.60 R
3156 5394 0.038159 GTGGGAACGTGTCCTCTCAG 60.038 60.0 13.94 0.0 46.92 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 4.894784 TCAGTCCACAAGATGTTCTAACC 58.105 43.478 0.00 0.00 0.00 2.85
54 55 7.996644 AGTCCACAAGATGTTCTAACCTTTTTA 59.003 33.333 0.00 0.00 0.00 1.52
66 67 7.989416 TCTAACCTTTTTATGAATCGGTTGT 57.011 32.000 11.57 0.00 36.30 3.32
84 85 9.692749 ATCGGTTGTATATAGACACATGTTAAG 57.307 33.333 0.00 0.00 0.00 1.85
110 111 6.149807 GTGTTTATTCGTCATTTTGGTCCCTA 59.850 38.462 0.00 0.00 0.00 3.53
118 119 4.628766 GTCATTTTGGTCCCTACGTAGTTC 59.371 45.833 20.73 10.35 37.78 3.01
124 125 5.999205 TGGTCCCTACGTAGTTCAAAATA 57.001 39.130 20.73 0.00 37.78 1.40
148 149 6.302535 TCTTATATTTGTGAACGGAGGGAA 57.697 37.500 0.00 0.00 0.00 3.97
229 230 5.572211 ACAATCGCAAATGATCACATACAC 58.428 37.500 0.00 0.00 35.50 2.90
233 234 3.100817 GCAAATGATCACATACACGCAC 58.899 45.455 0.00 0.00 35.50 5.34
235 236 4.090729 CAAATGATCACATACACGCACAC 58.909 43.478 0.00 0.00 35.50 3.82
267 268 4.637534 CCTATGAAAGTAAGCATGCACACT 59.362 41.667 21.98 18.56 0.00 3.55
286 287 3.449018 CACTACACTCCTATGAGCACCTT 59.551 47.826 0.00 0.00 42.74 3.50
298 299 4.890158 TGAGCACCTTCAAGATACTGAA 57.110 40.909 0.00 0.00 34.22 3.02
311 312 4.894784 AGATACTGAACCGACACAACATT 58.105 39.130 0.00 0.00 0.00 2.71
314 315 4.027572 ACTGAACCGACACAACATTTTG 57.972 40.909 0.00 0.00 38.83 2.44
322 323 5.153513 CCGACACAACATTTTGAAATCGAT 58.846 37.500 14.16 0.00 37.20 3.59
323 324 6.072948 ACCGACACAACATTTTGAAATCGATA 60.073 34.615 0.00 0.00 37.20 2.92
340 341 4.496360 TCGATAAAGTCACCAAATACGCA 58.504 39.130 0.00 0.00 0.00 5.24
348 349 3.242248 GTCACCAAATACGCATCGTAGTC 59.758 47.826 5.34 0.00 45.45 2.59
373 374 0.969894 AAACGTCTCCTCCTCACCAG 59.030 55.000 0.00 0.00 0.00 4.00
376 377 1.257743 CGTCTCCTCCTCACCAGAAA 58.742 55.000 0.00 0.00 0.00 2.52
379 380 1.203237 TCTCCTCCTCACCAGAAAGCT 60.203 52.381 0.00 0.00 0.00 3.74
381 382 2.834549 CTCCTCCTCACCAGAAAGCTTA 59.165 50.000 0.00 0.00 0.00 3.09
394 395 9.487790 CACCAGAAAGCTTAAAAATAAATCCAA 57.512 29.630 0.00 0.00 0.00 3.53
422 423 2.735762 GCGAGCACCAGTAAAGTCTAGG 60.736 54.545 0.00 0.00 0.00 3.02
432 433 7.661847 CACCAGTAAAGTCTAGGAACTTGAAAT 59.338 37.037 0.00 0.00 42.52 2.17
436 437 8.871125 AGTAAAGTCTAGGAACTTGAAATCTGA 58.129 33.333 0.00 0.00 42.52 3.27
438 439 8.558973 AAAGTCTAGGAACTTGAAATCTGATG 57.441 34.615 0.00 0.00 42.52 3.07
453 454 1.377229 GATGGGTTGGTTCCACCGA 59.623 57.895 0.00 0.00 42.58 4.69
472 473 2.621338 GACCATCTGAGCAACGATCAA 58.379 47.619 0.00 0.00 0.00 2.57
494 495 4.927978 TTCACCATGTTAAGTTGGTTGG 57.072 40.909 6.53 0.00 43.73 3.77
497 498 1.275010 CCATGTTAAGTTGGTTGGCCC 59.725 52.381 0.00 0.00 0.00 5.80
518 519 0.934496 TGTGCAAAGTACAGTCACGC 59.066 50.000 0.00 0.00 0.00 5.34
530 531 1.302192 GTCACGCCCTACCTTGCAA 60.302 57.895 0.00 0.00 0.00 4.08
536 537 1.476833 CGCCCTACCTTGCAATGGTAT 60.477 52.381 20.86 6.01 44.52 2.73
613 2676 4.779733 TGGCCGGAGAGGAGGACC 62.780 72.222 5.05 0.00 45.00 4.46
625 2688 0.971386 GGAGGACCTACGTGTTCCAA 59.029 55.000 12.78 0.00 0.00 3.53
626 2689 1.345415 GGAGGACCTACGTGTTCCAAA 59.655 52.381 12.78 0.00 0.00 3.28
627 2690 2.410939 GAGGACCTACGTGTTCCAAAC 58.589 52.381 12.78 2.85 0.00 2.93
628 2691 2.036862 GAGGACCTACGTGTTCCAAACT 59.963 50.000 12.78 0.00 0.00 2.66
629 2692 2.436911 AGGACCTACGTGTTCCAAACTT 59.563 45.455 12.78 0.00 0.00 2.66
630 2693 3.118149 AGGACCTACGTGTTCCAAACTTT 60.118 43.478 12.78 0.00 0.00 2.66
631 2694 3.628942 GGACCTACGTGTTCCAAACTTTT 59.371 43.478 0.00 0.00 0.00 2.27
632 2695 4.815846 GGACCTACGTGTTCCAAACTTTTA 59.184 41.667 0.00 0.00 0.00 1.52
633 2696 5.277490 GGACCTACGTGTTCCAAACTTTTAC 60.277 44.000 0.00 0.00 0.00 2.01
634 2697 4.576053 ACCTACGTGTTCCAAACTTTTACC 59.424 41.667 0.00 0.00 0.00 2.85
635 2698 4.575645 CCTACGTGTTCCAAACTTTTACCA 59.424 41.667 0.00 0.00 0.00 3.25
636 2699 5.239963 CCTACGTGTTCCAAACTTTTACCAT 59.760 40.000 0.00 0.00 0.00 3.55
637 2700 5.585820 ACGTGTTCCAAACTTTTACCATT 57.414 34.783 0.00 0.00 0.00 3.16
638 2701 5.344884 ACGTGTTCCAAACTTTTACCATTG 58.655 37.500 0.00 0.00 0.00 2.82
639 2702 5.105675 ACGTGTTCCAAACTTTTACCATTGT 60.106 36.000 0.00 0.00 0.00 2.71
640 2703 6.095160 ACGTGTTCCAAACTTTTACCATTGTA 59.905 34.615 0.00 0.00 0.00 2.41
641 2704 6.635239 CGTGTTCCAAACTTTTACCATTGTAG 59.365 38.462 0.00 0.00 0.00 2.74
642 2705 7.485810 GTGTTCCAAACTTTTACCATTGTAGT 58.514 34.615 0.00 0.00 0.00 2.73
643 2706 7.977293 GTGTTCCAAACTTTTACCATTGTAGTT 59.023 33.333 0.00 0.00 0.00 2.24
644 2707 8.532819 TGTTCCAAACTTTTACCATTGTAGTTT 58.467 29.630 0.00 0.00 0.00 2.66
645 2708 9.027129 GTTCCAAACTTTTACCATTGTAGTTTC 57.973 33.333 0.00 0.00 0.00 2.78
646 2709 8.294954 TCCAAACTTTTACCATTGTAGTTTCA 57.705 30.769 0.00 0.00 0.00 2.69
647 2710 8.750298 TCCAAACTTTTACCATTGTAGTTTCAA 58.250 29.630 0.00 0.00 0.00 2.69
648 2711 9.372369 CCAAACTTTTACCATTGTAGTTTCAAA 57.628 29.630 0.00 0.00 0.00 2.69
774 2838 1.444895 GCTCTTTTGCACCGCATGG 60.445 57.895 0.00 0.00 38.76 3.66
775 2839 1.865788 GCTCTTTTGCACCGCATGGA 61.866 55.000 0.00 0.00 38.76 3.41
776 2840 0.597568 CTCTTTTGCACCGCATGGAA 59.402 50.000 0.00 0.00 38.76 3.53
837 2901 3.025262 GCCAAATTAAATCCCCCGTACA 58.975 45.455 0.00 0.00 0.00 2.90
870 2934 1.000496 GCCTATATATAGCCGGCGTCC 60.000 57.143 23.20 0.00 0.00 4.79
892 2956 1.006086 CAGTGAACGAGCACACACAA 58.994 50.000 13.19 0.00 41.19 3.33
896 2960 1.129624 TGAACGAGCACACACAAACAC 59.870 47.619 0.00 0.00 0.00 3.32
937 3005 1.586422 CATCCACCGATCGATTGCTT 58.414 50.000 18.66 0.69 0.00 3.91
958 3026 1.153086 GTCTTGGCCATCCGCTGAT 60.153 57.895 6.09 0.00 37.74 2.90
1107 3175 2.426183 CTTCGTCTTCGTCGGCGTG 61.426 63.158 10.18 3.84 39.49 5.34
1136 3204 4.824166 CGTCGGAGGTACGTGCGG 62.824 72.222 25.57 9.94 35.66 5.69
1155 3231 4.767255 CAGTGCTCCTCCGCCCAC 62.767 72.222 0.00 0.00 0.00 4.61
1174 3250 2.290641 CACTTTAATGCCGGCTACATCC 59.709 50.000 29.70 0.00 0.00 3.51
1192 3268 2.667318 CGTTCGTTCCGTGCATGCT 61.667 57.895 20.33 0.00 0.00 3.79
1209 3285 1.303888 CTGTGCACAGCCCCTGAAT 60.304 57.895 32.39 0.00 37.15 2.57
1219 3295 0.608035 GCCCCTGAATCAACCGTTCA 60.608 55.000 0.00 0.00 34.63 3.18
1282 3359 0.251165 GGGCACACACACCTACCAAT 60.251 55.000 0.00 0.00 0.00 3.16
1286 3363 3.142951 GCACACACACCTACCAATTACA 58.857 45.455 0.00 0.00 0.00 2.41
1428 3506 0.670546 CCAGTAGGTTGTGAGCGGTG 60.671 60.000 0.00 0.00 0.00 4.94
1514 3594 2.715532 AAGCTCGCACGTCACCATGT 62.716 55.000 0.00 0.00 0.00 3.21
1519 3599 1.298157 CGCACGTCACCATGTGGATT 61.298 55.000 5.96 0.00 39.63 3.01
1550 3741 5.126067 TGTCAAGTTTCTTCTCCCTCTTTG 58.874 41.667 0.00 0.00 0.00 2.77
1622 3818 1.164662 GGCATGCATGTCATCTCGCT 61.165 55.000 26.04 0.00 31.79 4.93
1623 3819 0.661552 GCATGCATGTCATCTCGCTT 59.338 50.000 26.79 0.00 31.79 4.68
1624 3820 1.065102 GCATGCATGTCATCTCGCTTT 59.935 47.619 26.79 0.00 31.79 3.51
1625 3821 2.716398 CATGCATGTCATCTCGCTTTG 58.284 47.619 18.91 0.00 31.79 2.77
1626 3822 2.097680 TGCATGTCATCTCGCTTTGA 57.902 45.000 0.00 0.00 0.00 2.69
1627 3823 2.425539 TGCATGTCATCTCGCTTTGAA 58.574 42.857 0.00 0.00 0.00 2.69
1628 3824 2.417586 TGCATGTCATCTCGCTTTGAAG 59.582 45.455 0.00 0.00 0.00 3.02
1639 3835 2.952714 CTTTGAAGCACCTCCTGGG 58.047 57.895 0.00 0.00 41.89 4.45
1671 3867 4.444720 GCGGCACTGTATTGTATAGACTTC 59.555 45.833 0.00 0.00 0.00 3.01
1727 3923 3.118956 CGACCACCTAGAGCTTCAGATTT 60.119 47.826 0.00 0.00 0.00 2.17
1739 3935 3.755378 GCTTCAGATTTGTCATGTCCAGT 59.245 43.478 0.00 0.00 0.00 4.00
1740 3936 4.142730 GCTTCAGATTTGTCATGTCCAGTC 60.143 45.833 0.00 0.00 0.00 3.51
1741 3937 3.942829 TCAGATTTGTCATGTCCAGTCC 58.057 45.455 0.00 0.00 0.00 3.85
1742 3938 3.327464 TCAGATTTGTCATGTCCAGTCCA 59.673 43.478 0.00 0.00 0.00 4.02
1743 3939 3.688185 CAGATTTGTCATGTCCAGTCCAG 59.312 47.826 0.00 0.00 0.00 3.86
1798 3994 0.314935 CCATATCACCCGCATTTGCC 59.685 55.000 0.00 0.00 37.91 4.52
1801 3997 0.678366 TATCACCCGCATTTGCCGTT 60.678 50.000 0.00 0.00 37.91 4.44
1879 4075 2.064014 GGCTGCTGATTTCTTTTGTGC 58.936 47.619 0.00 0.00 0.00 4.57
2157 4355 4.093952 CTGGTACGTCGCCGTCGT 62.094 66.667 14.38 14.38 46.28 4.34
2200 4398 1.239968 CCAGCCTGACAACCTCAAGC 61.240 60.000 0.00 0.00 36.68 4.01
2645 4848 1.048601 TGGAGTGAAAGGAGCTCGTT 58.951 50.000 15.73 15.73 0.00 3.85
2658 4861 1.219393 CTCGTTCTCCTGGGGAAGC 59.781 63.158 9.83 4.14 0.00 3.86
2659 4862 1.229209 TCGTTCTCCTGGGGAAGCT 60.229 57.895 9.83 0.00 0.00 3.74
2660 4863 1.219393 CGTTCTCCTGGGGAAGCTC 59.781 63.158 9.83 0.00 0.00 4.09
2661 4864 1.261238 CGTTCTCCTGGGGAAGCTCT 61.261 60.000 9.83 0.00 0.00 4.09
2662 4865 0.539518 GTTCTCCTGGGGAAGCTCTC 59.460 60.000 9.83 0.00 0.00 3.20
2663 4866 0.972983 TTCTCCTGGGGAAGCTCTCG 60.973 60.000 4.49 0.00 0.00 4.04
2664 4867 3.077556 TCCTGGGGAAGCTCTCGC 61.078 66.667 0.00 0.00 36.26 5.03
2708 4911 0.179111 GATGATCAACCGCTCCGACA 60.179 55.000 0.00 0.00 0.00 4.35
2872 5083 1.948611 GCCAATGAGCCGTGGAAGTAA 60.949 52.381 0.00 0.00 37.03 2.24
2936 5148 3.074412 CTCCCCGTGCATGGAAATATAC 58.926 50.000 27.13 0.00 0.00 1.47
3039 5269 5.892160 TTCATGTAGCTAGTCAACTACGT 57.108 39.130 0.00 0.00 41.36 3.57
3041 5271 7.563888 TTCATGTAGCTAGTCAACTACGTAT 57.436 36.000 0.00 0.00 41.36 3.06
3042 5272 7.563888 TCATGTAGCTAGTCAACTACGTATT 57.436 36.000 0.00 0.00 41.36 1.89
3043 5273 7.415229 TCATGTAGCTAGTCAACTACGTATTG 58.585 38.462 0.00 3.74 41.36 1.90
3044 5274 6.748333 TGTAGCTAGTCAACTACGTATTGT 57.252 37.500 13.68 0.80 41.36 2.71
3045 5275 6.549061 TGTAGCTAGTCAACTACGTATTGTG 58.451 40.000 13.68 6.01 41.36 3.33
3046 5276 5.892160 AGCTAGTCAACTACGTATTGTGA 57.108 39.130 13.68 7.80 0.00 3.58
3053 5290 6.708949 AGTCAACTACGTATTGTGACCAAAAT 59.291 34.615 20.88 7.55 33.44 1.82
3054 5291 7.874016 AGTCAACTACGTATTGTGACCAAAATA 59.126 33.333 20.88 0.00 33.44 1.40
3072 5309 9.011095 ACCAAAATACTCTTTTTAACTAGAGGC 57.989 33.333 14.40 0.00 41.73 4.70
3073 5310 9.232473 CCAAAATACTCTTTTTAACTAGAGGCT 57.768 33.333 14.40 0.00 41.73 4.58
3084 5321 1.284198 ACTAGAGGCTACACCCGAGAA 59.716 52.381 0.00 0.00 40.58 2.87
3085 5322 1.677052 CTAGAGGCTACACCCGAGAAC 59.323 57.143 0.00 0.00 40.58 3.01
3086 5323 0.039911 AGAGGCTACACCCGAGAACT 59.960 55.000 0.00 0.00 40.58 3.01
3087 5324 1.284198 AGAGGCTACACCCGAGAACTA 59.716 52.381 0.00 0.00 40.58 2.24
3088 5325 2.097825 GAGGCTACACCCGAGAACTAA 58.902 52.381 0.00 0.00 40.58 2.24
3089 5326 2.099427 GAGGCTACACCCGAGAACTAAG 59.901 54.545 0.00 0.00 40.58 2.18
3090 5327 1.471153 GGCTACACCCGAGAACTAAGC 60.471 57.143 0.00 0.00 0.00 3.09
3091 5328 1.471153 GCTACACCCGAGAACTAAGCC 60.471 57.143 0.00 0.00 0.00 4.35
3092 5329 2.100989 CTACACCCGAGAACTAAGCCT 58.899 52.381 0.00 0.00 0.00 4.58
3093 5330 2.226962 ACACCCGAGAACTAAGCCTA 57.773 50.000 0.00 0.00 0.00 3.93
3094 5331 2.100989 ACACCCGAGAACTAAGCCTAG 58.899 52.381 0.00 0.00 0.00 3.02
3095 5332 2.291411 ACACCCGAGAACTAAGCCTAGA 60.291 50.000 0.00 0.00 0.00 2.43
3096 5333 2.099427 CACCCGAGAACTAAGCCTAGAC 59.901 54.545 0.00 0.00 0.00 2.59
3119 5356 3.177883 CGTTGGTGCTCGCATTTTT 57.822 47.368 0.00 0.00 0.00 1.94
3154 5392 2.762745 ACTTAGCGGTGATGTTCGTTT 58.237 42.857 0.00 0.00 0.00 3.60
3156 5394 3.676646 ACTTAGCGGTGATGTTCGTTTAC 59.323 43.478 0.00 0.00 0.00 2.01
3158 5396 2.066262 AGCGGTGATGTTCGTTTACTG 58.934 47.619 0.00 0.00 0.00 2.74
3159 5397 2.063266 GCGGTGATGTTCGTTTACTGA 58.937 47.619 0.00 0.00 0.00 3.41
3161 5399 3.571571 CGGTGATGTTCGTTTACTGAGA 58.428 45.455 0.00 0.00 0.00 3.27
3162 5400 3.608506 CGGTGATGTTCGTTTACTGAGAG 59.391 47.826 0.00 0.00 0.00 3.20
3164 5402 4.321750 GGTGATGTTCGTTTACTGAGAGGA 60.322 45.833 0.00 0.00 0.00 3.71
3166 5404 4.279922 TGATGTTCGTTTACTGAGAGGACA 59.720 41.667 0.00 0.00 0.00 4.02
3170 5408 2.620115 TCGTTTACTGAGAGGACACGTT 59.380 45.455 0.00 0.00 0.00 3.99
3171 5409 2.978489 CGTTTACTGAGAGGACACGTTC 59.022 50.000 0.00 0.00 0.00 3.95
3172 5410 3.315418 GTTTACTGAGAGGACACGTTCC 58.685 50.000 8.26 8.26 46.33 3.62
3179 5417 2.356673 GGACACGTTCCCACCGAC 60.357 66.667 5.71 0.00 38.70 4.79
3180 5418 2.732658 GACACGTTCCCACCGACT 59.267 61.111 0.00 0.00 0.00 4.18
3181 5419 1.526575 GGACACGTTCCCACCGACTA 61.527 60.000 5.71 0.00 38.70 2.59
3182 5420 0.387750 GACACGTTCCCACCGACTAC 60.388 60.000 0.00 0.00 0.00 2.73
3183 5421 1.443194 CACGTTCCCACCGACTACG 60.443 63.158 0.00 0.00 38.14 3.51
3193 5431 2.490217 CGACTACGGAGGTGCCAG 59.510 66.667 0.00 0.00 35.94 4.85
3194 5432 2.341101 CGACTACGGAGGTGCCAGT 61.341 63.158 0.00 0.00 35.94 4.00
3195 5433 1.215647 GACTACGGAGGTGCCAGTG 59.784 63.158 0.00 0.00 35.94 3.66
3196 5434 2.227089 GACTACGGAGGTGCCAGTGG 62.227 65.000 4.20 4.20 35.94 4.00
3197 5435 2.203728 TACGGAGGTGCCAGTGGT 60.204 61.111 11.74 0.00 35.94 4.16
3198 5436 2.507110 CTACGGAGGTGCCAGTGGTG 62.507 65.000 11.74 0.00 35.94 4.17
3199 5437 3.625897 CGGAGGTGCCAGTGGTGA 61.626 66.667 11.74 0.00 35.94 4.02
3200 5438 2.959484 CGGAGGTGCCAGTGGTGAT 61.959 63.158 11.74 0.00 35.94 3.06
3201 5439 1.380302 GGAGGTGCCAGTGGTGATT 59.620 57.895 11.74 0.00 36.34 2.57
3202 5440 0.251341 GGAGGTGCCAGTGGTGATTT 60.251 55.000 11.74 0.00 36.34 2.17
3203 5441 1.168714 GAGGTGCCAGTGGTGATTTC 58.831 55.000 11.74 0.00 0.00 2.17
3207 5445 0.107643 TGCCAGTGGTGATTTCGTCA 59.892 50.000 11.74 0.00 0.00 4.35
3210 5448 2.159517 GCCAGTGGTGATTTCGTCAATC 60.160 50.000 11.74 3.88 41.76 2.67
3212 5450 3.753272 CCAGTGGTGATTTCGTCAATCTT 59.247 43.478 0.00 0.00 41.91 2.40
3214 5452 5.163854 CCAGTGGTGATTTCGTCAATCTTAC 60.164 44.000 0.00 7.32 41.91 2.34
3215 5453 5.408299 CAGTGGTGATTTCGTCAATCTTACA 59.592 40.000 10.22 5.39 41.91 2.41
3217 5455 6.073222 AGTGGTGATTTCGTCAATCTTACAAC 60.073 38.462 10.22 6.08 41.91 3.32
3222 5460 6.588373 TGATTTCGTCAATCTTACAACGATGA 59.412 34.615 0.00 0.00 42.94 2.92
3227 5465 4.572389 GTCAATCTTACAACGATGAGCCAT 59.428 41.667 0.00 0.00 0.00 4.40
3233 5471 2.715046 ACAACGATGAGCCATGACAAT 58.285 42.857 0.00 0.00 0.00 2.71
3236 5474 4.022068 ACAACGATGAGCCATGACAATTTT 60.022 37.500 0.00 0.00 0.00 1.82
3339 5603 8.759481 TTTTGGTAAATATGGCTATGTGATGA 57.241 30.769 0.00 0.00 0.00 2.92
3340 5604 7.744087 TTGGTAAATATGGCTATGTGATGAC 57.256 36.000 0.00 0.00 0.00 3.06
3341 5605 7.078249 TGGTAAATATGGCTATGTGATGACT 57.922 36.000 0.00 0.00 0.00 3.41
3342 5606 8.201242 TGGTAAATATGGCTATGTGATGACTA 57.799 34.615 0.00 0.00 0.00 2.59
3343 5607 8.094548 TGGTAAATATGGCTATGTGATGACTAC 58.905 37.037 0.00 0.00 0.00 2.73
3344 5608 8.094548 GGTAAATATGGCTATGTGATGACTACA 58.905 37.037 0.00 0.00 0.00 2.74
3345 5609 9.489084 GTAAATATGGCTATGTGATGACTACAA 57.511 33.333 0.00 0.00 0.00 2.41
3346 5610 8.613060 AAATATGGCTATGTGATGACTACAAG 57.387 34.615 0.00 0.00 0.00 3.16
3347 5611 3.797039 TGGCTATGTGATGACTACAAGC 58.203 45.455 0.00 0.00 34.46 4.01
3348 5612 3.197549 TGGCTATGTGATGACTACAAGCA 59.802 43.478 0.00 0.00 35.66 3.91
3349 5613 4.191544 GGCTATGTGATGACTACAAGCAA 58.808 43.478 0.00 0.00 35.66 3.91
3350 5614 4.635765 GGCTATGTGATGACTACAAGCAAA 59.364 41.667 0.00 0.00 35.66 3.68
3351 5615 5.297776 GGCTATGTGATGACTACAAGCAAAT 59.702 40.000 0.00 0.00 35.66 2.32
3352 5616 6.183360 GGCTATGTGATGACTACAAGCAAATT 60.183 38.462 0.00 0.00 35.66 1.82
3353 5617 7.253422 GCTATGTGATGACTACAAGCAAATTT 58.747 34.615 0.00 0.00 34.89 1.82
3354 5618 7.756722 GCTATGTGATGACTACAAGCAAATTTT 59.243 33.333 0.00 0.00 34.89 1.82
3355 5619 9.282247 CTATGTGATGACTACAAGCAAATTTTC 57.718 33.333 0.00 0.00 0.00 2.29
3356 5620 7.036996 TGTGATGACTACAAGCAAATTTTCA 57.963 32.000 0.00 0.00 0.00 2.69
3357 5621 7.487484 TGTGATGACTACAAGCAAATTTTCAA 58.513 30.769 0.00 0.00 0.00 2.69
3358 5622 7.978414 TGTGATGACTACAAGCAAATTTTCAAA 59.022 29.630 0.00 0.00 0.00 2.69
3359 5623 8.816144 GTGATGACTACAAGCAAATTTTCAAAA 58.184 29.630 0.00 0.00 0.00 2.44
3360 5624 9.376075 TGATGACTACAAGCAAATTTTCAAAAA 57.624 25.926 0.00 0.00 0.00 1.94
3386 5650 8.992835 ATCATGCTTTTTGAGAAACTATTTCC 57.007 30.769 0.00 0.00 40.54 3.13
3387 5651 7.378181 TCATGCTTTTTGAGAAACTATTTCCC 58.622 34.615 0.00 0.00 40.54 3.97
3388 5652 6.096673 TGCTTTTTGAGAAACTATTTCCCC 57.903 37.500 0.00 0.00 40.54 4.81
3389 5653 5.838521 TGCTTTTTGAGAAACTATTTCCCCT 59.161 36.000 0.00 0.00 40.54 4.79
3390 5654 6.326323 TGCTTTTTGAGAAACTATTTCCCCTT 59.674 34.615 0.00 0.00 40.54 3.95
3391 5655 7.507616 TGCTTTTTGAGAAACTATTTCCCCTTA 59.492 33.333 0.00 0.00 40.54 2.69
3392 5656 8.364894 GCTTTTTGAGAAACTATTTCCCCTTAA 58.635 33.333 0.00 0.00 40.54 1.85
3398 5662 9.031537 TGAGAAACTATTTCCCCTTAATTTTCC 57.968 33.333 0.00 0.00 40.54 3.13
3399 5663 8.966155 AGAAACTATTTCCCCTTAATTTTCCA 57.034 30.769 0.00 0.00 40.54 3.53
3400 5664 9.560860 AGAAACTATTTCCCCTTAATTTTCCAT 57.439 29.630 0.00 0.00 40.54 3.41
3401 5665 9.599866 GAAACTATTTCCCCTTAATTTTCCATG 57.400 33.333 0.00 0.00 33.56 3.66
3402 5666 8.679344 AACTATTTCCCCTTAATTTTCCATGT 57.321 30.769 0.00 0.00 0.00 3.21
3403 5667 8.078060 ACTATTTCCCCTTAATTTTCCATGTG 57.922 34.615 0.00 0.00 0.00 3.21
3404 5668 5.753721 TTTCCCCTTAATTTTCCATGTGG 57.246 39.130 0.00 0.00 0.00 4.17
3405 5669 3.103742 TCCCCTTAATTTTCCATGTGGC 58.896 45.455 0.00 0.00 34.44 5.01
3406 5670 3.106827 CCCCTTAATTTTCCATGTGGCT 58.893 45.455 0.00 0.00 34.44 4.75
3407 5671 4.017037 TCCCCTTAATTTTCCATGTGGCTA 60.017 41.667 0.00 0.00 34.44 3.93
3408 5672 4.901250 CCCCTTAATTTTCCATGTGGCTAT 59.099 41.667 0.00 0.00 34.44 2.97
3409 5673 5.366477 CCCCTTAATTTTCCATGTGGCTATT 59.634 40.000 0.00 0.00 34.44 1.73
3410 5674 6.553100 CCCCTTAATTTTCCATGTGGCTATTA 59.447 38.462 0.00 0.00 34.44 0.98
3411 5675 7.433680 CCCTTAATTTTCCATGTGGCTATTAC 58.566 38.462 0.00 0.00 34.44 1.89
3412 5676 7.069331 CCCTTAATTTTCCATGTGGCTATTACA 59.931 37.037 0.00 0.00 34.44 2.41
3413 5677 8.474025 CCTTAATTTTCCATGTGGCTATTACAA 58.526 33.333 0.00 0.00 34.44 2.41
3414 5678 9.868277 CTTAATTTTCCATGTGGCTATTACAAA 57.132 29.630 0.00 0.00 34.44 2.83
3441 5705 3.817148 TTCCAGGAATTTACGAAACGC 57.183 42.857 0.00 0.00 0.00 4.84
3442 5706 2.768698 TCCAGGAATTTACGAAACGCA 58.231 42.857 0.00 0.00 0.00 5.24
3443 5707 2.739913 TCCAGGAATTTACGAAACGCAG 59.260 45.455 0.00 0.00 0.00 5.18
3444 5708 7.955526 AATTCCAGGAATTTACGAAACGCAGT 61.956 38.462 20.35 0.00 40.30 4.40
3445 5709 9.335815 AATTCCAGGAATTTACGAAACGCAGTT 62.336 37.037 20.35 0.00 45.87 3.16
3472 5736 9.814899 TTTTTCGTAAAATTGCCATATGATCAT 57.185 25.926 13.81 13.81 0.00 2.45
3473 5737 9.814899 TTTTCGTAAAATTGCCATATGATCATT 57.185 25.926 14.65 0.00 0.00 2.57
3476 5740 9.500785 TCGTAAAATTGCCATATGATCATTAGA 57.499 29.630 14.65 0.00 0.00 2.10
3479 5743 8.997621 AAAATTGCCATATGATCATTAGATGC 57.002 30.769 14.65 10.37 33.72 3.91
3480 5744 7.712204 AATTGCCATATGATCATTAGATGCA 57.288 32.000 14.65 12.70 33.72 3.96
3481 5745 6.753107 TTGCCATATGATCATTAGATGCAG 57.247 37.500 14.65 1.78 33.72 4.41
3482 5746 4.638865 TGCCATATGATCATTAGATGCAGC 59.361 41.667 14.65 11.30 33.72 5.25
3483 5747 4.882427 GCCATATGATCATTAGATGCAGCT 59.118 41.667 14.65 10.44 33.72 4.24
3484 5748 6.053650 GCCATATGATCATTAGATGCAGCTA 58.946 40.000 14.65 7.80 33.72 3.32
3485 5749 6.711194 GCCATATGATCATTAGATGCAGCTAT 59.289 38.462 13.32 0.00 33.72 2.97
3486 5750 7.308049 GCCATATGATCATTAGATGCAGCTATG 60.308 40.741 13.32 12.75 33.72 2.23
3487 5751 7.715686 CCATATGATCATTAGATGCAGCTATGT 59.284 37.037 13.32 1.92 33.72 2.29
3488 5752 9.110502 CATATGATCATTAGATGCAGCTATGTT 57.889 33.333 13.32 8.29 33.72 2.71
3489 5753 7.997773 ATGATCATTAGATGCAGCTATGTTT 57.002 32.000 13.32 6.07 33.72 2.83
3490 5754 7.430992 TGATCATTAGATGCAGCTATGTTTC 57.569 36.000 13.32 13.33 33.72 2.78
3491 5755 7.222161 TGATCATTAGATGCAGCTATGTTTCT 58.778 34.615 13.32 0.00 33.72 2.52
3492 5756 6.856135 TCATTAGATGCAGCTATGTTTCTG 57.144 37.500 13.32 4.54 0.00 3.02
3493 5757 5.761726 TCATTAGATGCAGCTATGTTTCTGG 59.238 40.000 13.32 0.00 0.00 3.86
3494 5758 3.920231 AGATGCAGCTATGTTTCTGGA 57.080 42.857 0.55 0.00 35.20 3.86
3495 5759 3.806380 AGATGCAGCTATGTTTCTGGAG 58.194 45.455 0.55 0.00 34.24 3.86
3496 5760 3.453717 AGATGCAGCTATGTTTCTGGAGA 59.546 43.478 0.55 0.00 34.24 3.71
3497 5761 3.701205 TGCAGCTATGTTTCTGGAGAA 57.299 42.857 0.00 0.00 0.00 2.87
3498 5762 3.338249 TGCAGCTATGTTTCTGGAGAAC 58.662 45.455 0.00 0.00 33.13 3.01
3499 5763 3.244526 TGCAGCTATGTTTCTGGAGAACA 60.245 43.478 0.00 0.00 33.13 3.18
3500 5764 3.944015 GCAGCTATGTTTCTGGAGAACAT 59.056 43.478 7.51 7.51 33.13 2.71
3501 5765 4.397417 GCAGCTATGTTTCTGGAGAACATT 59.603 41.667 7.66 0.00 33.13 2.71
3502 5766 5.105997 GCAGCTATGTTTCTGGAGAACATTT 60.106 40.000 7.66 0.00 33.13 2.32
3503 5767 6.571150 GCAGCTATGTTTCTGGAGAACATTTT 60.571 38.462 7.66 0.00 33.13 1.82
3504 5768 7.025963 CAGCTATGTTTCTGGAGAACATTTTC 58.974 38.462 7.66 0.00 33.13 2.29
3505 5769 6.151817 AGCTATGTTTCTGGAGAACATTTTCC 59.848 38.462 7.66 0.00 33.13 3.13
3506 5770 5.728637 ATGTTTCTGGAGAACATTTTCCC 57.271 39.130 0.00 0.00 33.13 3.97
3507 5771 4.803452 TGTTTCTGGAGAACATTTTCCCT 58.197 39.130 0.00 0.00 33.13 4.20
3508 5772 5.208121 TGTTTCTGGAGAACATTTTCCCTT 58.792 37.500 0.00 0.00 33.13 3.95
3509 5773 5.301805 TGTTTCTGGAGAACATTTTCCCTTC 59.698 40.000 0.00 0.00 33.13 3.46
3510 5774 4.722526 TCTGGAGAACATTTTCCCTTCA 57.277 40.909 0.00 0.00 32.29 3.02
3511 5775 5.060427 TCTGGAGAACATTTTCCCTTCAA 57.940 39.130 0.00 0.00 32.29 2.69
3512 5776 5.644188 TCTGGAGAACATTTTCCCTTCAAT 58.356 37.500 0.00 0.00 32.29 2.57
3513 5777 6.077322 TCTGGAGAACATTTTCCCTTCAATT 58.923 36.000 0.00 0.00 32.29 2.32
3514 5778 6.554605 TCTGGAGAACATTTTCCCTTCAATTT 59.445 34.615 0.00 0.00 32.29 1.82
3515 5779 7.071071 TCTGGAGAACATTTTCCCTTCAATTTT 59.929 33.333 0.00 0.00 32.29 1.82
3516 5780 8.256356 TGGAGAACATTTTCCCTTCAATTTTA 57.744 30.769 0.00 0.00 32.29 1.52
3517 5781 8.147704 TGGAGAACATTTTCCCTTCAATTTTAC 58.852 33.333 0.00 0.00 32.29 2.01
3518 5782 7.602644 GGAGAACATTTTCCCTTCAATTTTACC 59.397 37.037 0.00 0.00 31.28 2.85
3519 5783 8.028652 AGAACATTTTCCCTTCAATTTTACCA 57.971 30.769 0.00 0.00 31.28 3.25
3520 5784 8.150296 AGAACATTTTCCCTTCAATTTTACCAG 58.850 33.333 0.00 0.00 31.28 4.00
3521 5785 7.610580 ACATTTTCCCTTCAATTTTACCAGA 57.389 32.000 0.00 0.00 0.00 3.86
3522 5786 7.441836 ACATTTTCCCTTCAATTTTACCAGAC 58.558 34.615 0.00 0.00 0.00 3.51
3523 5787 5.699097 TTTCCCTTCAATTTTACCAGACG 57.301 39.130 0.00 0.00 0.00 4.18
3524 5788 4.627284 TCCCTTCAATTTTACCAGACGA 57.373 40.909 0.00 0.00 0.00 4.20
3525 5789 4.320870 TCCCTTCAATTTTACCAGACGAC 58.679 43.478 0.00 0.00 0.00 4.34
3526 5790 4.041198 TCCCTTCAATTTTACCAGACGACT 59.959 41.667 0.00 0.00 0.00 4.18
3527 5791 5.246656 TCCCTTCAATTTTACCAGACGACTA 59.753 40.000 0.00 0.00 0.00 2.59
3528 5792 5.350640 CCCTTCAATTTTACCAGACGACTAC 59.649 44.000 0.00 0.00 0.00 2.73
3529 5793 6.164176 CCTTCAATTTTACCAGACGACTACT 58.836 40.000 0.00 0.00 0.00 2.57
3530 5794 6.649557 CCTTCAATTTTACCAGACGACTACTT 59.350 38.462 0.00 0.00 0.00 2.24
3531 5795 7.172703 CCTTCAATTTTACCAGACGACTACTTT 59.827 37.037 0.00 0.00 0.00 2.66
3532 5796 8.441312 TTCAATTTTACCAGACGACTACTTTT 57.559 30.769 0.00 0.00 0.00 2.27
3533 5797 8.441312 TCAATTTTACCAGACGACTACTTTTT 57.559 30.769 0.00 0.00 0.00 1.94
3571 5835 9.908152 AAGTACTTTTTATTGCAAGGTGATTAC 57.092 29.630 4.94 1.39 0.00 1.89
3617 5881 9.959721 ACAATACCATGTTATCTTTACAAGAGT 57.040 29.630 0.00 0.00 41.61 3.24
3626 5890 9.653287 TGTTATCTTTACAAGAGTATCAACAGG 57.347 33.333 0.00 0.00 41.61 4.00
3627 5891 9.654663 GTTATCTTTACAAGAGTATCAACAGGT 57.345 33.333 0.00 0.00 41.61 4.00
3630 5894 8.974060 TCTTTACAAGAGTATCAACAGGTTTT 57.026 30.769 0.00 0.00 37.82 2.43
3631 5895 9.403583 TCTTTACAAGAGTATCAACAGGTTTTT 57.596 29.630 0.00 0.00 37.82 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 7.227156 AGAACATCTTGTGGACTGAAATAAGT 58.773 34.615 0.00 0.00 0.00 2.24
54 55 8.367911 ACATGTGTCTATATACAACCGATTCAT 58.632 33.333 0.00 0.00 29.85 2.57
61 62 9.042008 CACCTTAACATGTGTCTATATACAACC 57.958 37.037 0.00 0.00 29.85 3.77
84 85 5.158494 GGACCAAAATGACGAATAAACACC 58.842 41.667 0.00 0.00 0.00 4.16
124 125 6.494666 TCCCTCCGTTCACAAATATAAGAT 57.505 37.500 0.00 0.00 0.00 2.40
195 196 7.789341 TCATTTGCGATTGTATTGTGTAAAC 57.211 32.000 0.00 0.00 0.00 2.01
196 197 8.239998 TGATCATTTGCGATTGTATTGTGTAAA 58.760 29.630 0.00 0.00 0.00 2.01
197 198 7.696035 GTGATCATTTGCGATTGTATTGTGTAA 59.304 33.333 0.00 0.00 0.00 2.41
198 199 7.148340 TGTGATCATTTGCGATTGTATTGTGTA 60.148 33.333 0.00 0.00 0.00 2.90
199 200 6.029607 GTGATCATTTGCGATTGTATTGTGT 58.970 36.000 0.00 0.00 0.00 3.72
229 230 1.899437 ATAGGGGGAGTGTGTGTGCG 61.899 60.000 0.00 0.00 0.00 5.34
233 234 2.305927 ACTTTCATAGGGGGAGTGTGTG 59.694 50.000 0.00 0.00 0.00 3.82
235 236 4.770795 CTTACTTTCATAGGGGGAGTGTG 58.229 47.826 0.00 0.00 0.00 3.82
267 268 3.708451 TGAAGGTGCTCATAGGAGTGTA 58.292 45.455 6.23 0.00 43.37 2.90
286 287 4.202172 TGTTGTGTCGGTTCAGTATCTTGA 60.202 41.667 0.00 0.00 0.00 3.02
298 299 4.035792 TCGATTTCAAAATGTTGTGTCGGT 59.964 37.500 15.01 0.00 36.07 4.69
311 312 9.834628 GTATTTGGTGACTTTATCGATTTCAAA 57.165 29.630 1.71 0.00 0.00 2.69
314 315 6.627671 GCGTATTTGGTGACTTTATCGATTTC 59.372 38.462 1.71 0.00 0.00 2.17
322 323 4.247258 ACGATGCGTATTTGGTGACTTTA 58.753 39.130 0.00 0.00 38.73 1.85
323 324 3.071479 ACGATGCGTATTTGGTGACTTT 58.929 40.909 0.00 0.00 38.73 2.66
402 403 2.753452 TCCTAGACTTTACTGGTGCTCG 59.247 50.000 0.00 0.00 0.00 5.03
410 411 8.871125 TCAGATTTCAAGTTCCTAGACTTTACT 58.129 33.333 0.00 0.00 37.76 2.24
422 423 4.524328 ACCAACCCATCAGATTTCAAGTTC 59.476 41.667 0.00 0.00 0.00 3.01
453 454 2.768253 TTGATCGTTGCTCAGATGGT 57.232 45.000 0.00 0.00 0.00 3.55
494 495 1.164041 ACTGTACTTTGCACACGGGC 61.164 55.000 0.00 0.00 0.00 6.13
497 498 1.071502 CGTGACTGTACTTTGCACACG 60.072 52.381 6.35 6.35 42.04 4.49
518 519 5.675684 AAAAATACCATTGCAAGGTAGGG 57.324 39.130 23.26 14.49 44.29 3.53
567 568 9.195411 CCGTTTGATTTGTAAGTAACTAGTACA 57.805 33.333 0.00 0.00 34.88 2.90
573 574 5.048991 CAGCCCGTTTGATTTGTAAGTAACT 60.049 40.000 0.00 0.00 0.00 2.24
613 2676 5.738118 TGGTAAAAGTTTGGAACACGTAG 57.262 39.130 0.00 0.00 39.29 3.51
653 2716 7.768120 TGCAGATCACAATGGTAAAAAGTTTTT 59.232 29.630 17.26 17.26 0.00 1.94
654 2717 7.271511 TGCAGATCACAATGGTAAAAAGTTTT 58.728 30.769 0.00 0.00 0.00 2.43
655 2718 6.815089 TGCAGATCACAATGGTAAAAAGTTT 58.185 32.000 0.00 0.00 0.00 2.66
656 2719 6.403866 TGCAGATCACAATGGTAAAAAGTT 57.596 33.333 0.00 0.00 0.00 2.66
657 2720 6.040842 AGTTGCAGATCACAATGGTAAAAAGT 59.959 34.615 4.70 0.00 0.00 2.66
658 2721 6.364165 CAGTTGCAGATCACAATGGTAAAAAG 59.636 38.462 4.70 0.00 0.00 2.27
774 2838 3.846383 GCGCGCCTCAAATATTCTTCTTC 60.846 47.826 23.24 0.00 0.00 2.87
775 2839 2.032178 GCGCGCCTCAAATATTCTTCTT 59.968 45.455 23.24 0.00 0.00 2.52
776 2840 1.599542 GCGCGCCTCAAATATTCTTCT 59.400 47.619 23.24 0.00 0.00 2.85
870 2934 1.961277 GTGTGCTCGTTCACTGGGG 60.961 63.158 10.18 0.00 37.81 4.96
892 2956 0.030638 GCGCTGGATGTTTGTGTGTT 59.969 50.000 0.00 0.00 0.00 3.32
896 2960 2.502510 GCGCGCTGGATGTTTGTG 60.503 61.111 26.67 0.00 0.00 3.33
924 2992 2.215907 AGACAGAAGCAATCGATCGG 57.784 50.000 16.41 0.00 0.00 4.18
931 2999 2.097825 GATGGCCAAGACAGAAGCAAT 58.902 47.619 10.96 0.00 0.00 3.56
937 3005 2.268920 GCGGATGGCCAAGACAGA 59.731 61.111 10.96 0.00 34.80 3.41
958 3026 0.032130 GGCGCCTGTCGATGATCTTA 59.968 55.000 22.15 0.00 41.67 2.10
1153 3229 2.290641 GGATGTAGCCGGCATTAAAGTG 59.709 50.000 31.54 0.00 0.00 3.16
1154 3230 2.572290 GGATGTAGCCGGCATTAAAGT 58.428 47.619 31.54 8.51 0.00 2.66
1192 3268 1.303561 GATTCAGGGGCTGTGCACA 60.304 57.895 20.37 20.37 30.93 4.57
1200 3276 0.608035 TGAACGGTTGATTCAGGGGC 60.608 55.000 0.00 0.00 32.34 5.80
1201 3277 1.904287 TTGAACGGTTGATTCAGGGG 58.096 50.000 0.00 0.00 37.38 4.79
1246 3323 2.506644 TGCCCCACCTAGTTGTATAACC 59.493 50.000 0.00 0.00 37.52 2.85
1247 3324 3.054948 TGTGCCCCACCTAGTTGTATAAC 60.055 47.826 0.00 0.00 33.64 1.89
1249 3326 2.502538 GTGTGCCCCACCTAGTTGTATA 59.497 50.000 0.00 0.00 38.18 1.47
1250 3327 1.280998 GTGTGCCCCACCTAGTTGTAT 59.719 52.381 0.00 0.00 38.18 2.29
1282 3359 0.740149 ACACACGTGTCGTCCTGTAA 59.260 50.000 20.49 0.00 40.24 2.41
1286 3363 1.003851 CAAAACACACGTGTCGTCCT 58.996 50.000 20.49 8.73 44.13 3.85
1428 3506 2.999739 TTCGACGTGGCAAGGAACCC 63.000 60.000 5.22 0.00 0.00 4.11
1493 3573 3.470567 GGTGACGTGCGAGCTTCG 61.471 66.667 0.00 10.30 43.89 3.79
1514 3594 8.463930 AAGAAACTTGACAACTCAATAATCCA 57.536 30.769 0.00 0.00 35.78 3.41
1519 3599 6.710744 GGGAGAAGAAACTTGACAACTCAATA 59.289 38.462 0.00 0.00 35.78 1.90
1631 3827 2.903357 CATCACCGACCCAGGAGG 59.097 66.667 0.00 0.00 43.78 4.30
1632 3828 2.187946 GCATCACCGACCCAGGAG 59.812 66.667 0.00 0.00 34.73 3.69
1633 3829 3.770040 CGCATCACCGACCCAGGA 61.770 66.667 0.00 0.00 34.73 3.86
1634 3830 4.838152 CCGCATCACCGACCCAGG 62.838 72.222 0.00 0.00 37.30 4.45
1638 3834 4.760047 AGTGCCGCATCACCGACC 62.760 66.667 0.00 0.00 37.68 4.79
1639 3835 2.829043 TACAGTGCCGCATCACCGAC 62.829 60.000 0.00 0.00 37.68 4.79
1640 3836 1.955495 ATACAGTGCCGCATCACCGA 61.955 55.000 0.00 0.00 37.68 4.69
1641 3837 1.089481 AATACAGTGCCGCATCACCG 61.089 55.000 0.00 0.00 37.68 4.94
1642 3838 0.378257 CAATACAGTGCCGCATCACC 59.622 55.000 0.00 0.00 37.68 4.02
1643 3839 1.086696 ACAATACAGTGCCGCATCAC 58.913 50.000 0.00 0.00 37.24 3.06
1644 3840 2.682155 TACAATACAGTGCCGCATCA 57.318 45.000 0.00 0.00 0.00 3.07
1645 3841 4.386049 GTCTATACAATACAGTGCCGCATC 59.614 45.833 0.00 0.00 0.00 3.91
1646 3842 4.039245 AGTCTATACAATACAGTGCCGCAT 59.961 41.667 0.00 0.00 0.00 4.73
1647 3843 3.383505 AGTCTATACAATACAGTGCCGCA 59.616 43.478 0.00 0.00 0.00 5.69
1671 3867 4.498241 TCGATCAGGTGTTCTCTTGATTG 58.502 43.478 0.00 7.46 0.00 2.67
1727 3923 0.035317 GCACTGGACTGGACATGACA 59.965 55.000 0.00 0.00 0.00 3.58
1739 3935 0.904865 ATCTTCACGGGAGCACTGGA 60.905 55.000 0.00 0.00 0.00 3.86
1740 3936 0.824109 TATCTTCACGGGAGCACTGG 59.176 55.000 0.00 0.00 0.00 4.00
1741 3937 1.471676 GGTATCTTCACGGGAGCACTG 60.472 57.143 0.00 0.00 0.00 3.66
1742 3938 0.824759 GGTATCTTCACGGGAGCACT 59.175 55.000 0.00 0.00 0.00 4.40
1743 3939 0.179081 GGGTATCTTCACGGGAGCAC 60.179 60.000 0.00 0.00 0.00 4.40
1798 3994 0.025001 GACGATCGTGCCATCAAACG 59.975 55.000 28.12 0.00 41.11 3.60
1801 3997 1.067213 TCAAGACGATCGTGCCATCAA 60.067 47.619 28.12 1.21 0.00 2.57
1879 4075 5.633830 ACTGCTTGTCCTGATTAACAATG 57.366 39.130 0.00 0.00 35.03 2.82
2151 4349 0.964358 ACAGGTAGGAGGAACGACGG 60.964 60.000 0.00 0.00 0.00 4.79
2157 4355 1.555075 GCATGTGACAGGTAGGAGGAA 59.445 52.381 0.00 0.00 0.00 3.36
2200 4398 6.216801 TGGCACTTACTATTGTGGTAGTAG 57.783 41.667 0.00 0.00 38.15 2.57
2645 4848 1.380515 CGAGAGCTTCCCCAGGAGA 60.381 63.158 0.00 0.00 31.21 3.71
2872 5083 4.712122 ACGGTGAAAGAAACAATGTTGT 57.288 36.364 0.00 0.00 44.72 3.32
3015 5234 7.563888 ACGTAGTTGACTAGCTACATGAATA 57.436 36.000 0.00 0.00 37.78 1.75
3022 5241 6.686253 GTCACAATACGTAGTTGACTAGCTAC 59.314 42.308 20.69 0.00 37.78 3.58
3026 5256 5.946298 TGGTCACAATACGTAGTTGACTAG 58.054 41.667 23.92 6.36 37.78 2.57
3046 5276 9.011095 GCCTCTAGTTAAAAAGAGTATTTTGGT 57.989 33.333 12.16 0.00 38.03 3.67
3053 5290 7.093596 GGGTGTAGCCTCTAGTTAAAAAGAGTA 60.094 40.741 12.16 0.54 38.03 2.59
3054 5291 6.295745 GGGTGTAGCCTCTAGTTAAAAAGAGT 60.296 42.308 12.16 1.26 38.03 3.24
3072 5309 2.100989 AGGCTTAGTTCTCGGGTGTAG 58.899 52.381 0.00 0.00 0.00 2.74
3073 5310 2.226962 AGGCTTAGTTCTCGGGTGTA 57.773 50.000 0.00 0.00 0.00 2.90
3090 5327 1.298859 GCACCAACGCCAAGTCTAGG 61.299 60.000 0.00 0.00 0.00 3.02
3091 5328 0.320771 AGCACCAACGCCAAGTCTAG 60.321 55.000 0.00 0.00 0.00 2.43
3092 5329 0.320421 GAGCACCAACGCCAAGTCTA 60.320 55.000 0.00 0.00 0.00 2.59
3093 5330 1.598130 GAGCACCAACGCCAAGTCT 60.598 57.895 0.00 0.00 0.00 3.24
3094 5331 2.946762 GAGCACCAACGCCAAGTC 59.053 61.111 0.00 0.00 0.00 3.01
3095 5332 2.972505 CGAGCACCAACGCCAAGT 60.973 61.111 0.00 0.00 0.00 3.16
3119 5356 8.794553 TCACCGCTAAGTTTAATTAAATCCAAA 58.205 29.630 13.54 0.00 0.00 3.28
3132 5369 2.762745 ACGAACATCACCGCTAAGTTT 58.237 42.857 0.00 0.00 0.00 2.66
3134 5371 2.450609 AACGAACATCACCGCTAAGT 57.549 45.000 0.00 0.00 0.00 2.24
3138 5376 2.066262 CAGTAAACGAACATCACCGCT 58.934 47.619 0.00 0.00 0.00 5.52
3139 5377 2.063266 TCAGTAAACGAACATCACCGC 58.937 47.619 0.00 0.00 0.00 5.68
3140 5378 3.571571 TCTCAGTAAACGAACATCACCG 58.428 45.455 0.00 0.00 0.00 4.94
3142 5380 4.621886 GTCCTCTCAGTAAACGAACATCAC 59.378 45.833 0.00 0.00 0.00 3.06
3154 5392 1.202964 TGGGAACGTGTCCTCTCAGTA 60.203 52.381 13.94 0.00 46.92 2.74
3156 5394 0.038159 GTGGGAACGTGTCCTCTCAG 60.038 60.000 13.94 0.00 46.92 3.35
3158 5396 1.292541 GGTGGGAACGTGTCCTCTC 59.707 63.158 13.94 0.00 46.92 3.20
3159 5397 2.571216 CGGTGGGAACGTGTCCTCT 61.571 63.158 13.94 0.00 46.92 3.69
3161 5399 2.522436 TCGGTGGGAACGTGTCCT 60.522 61.111 13.94 0.00 46.92 3.85
3164 5402 1.662044 GTAGTCGGTGGGAACGTGT 59.338 57.895 0.00 0.00 0.00 4.49
3166 5404 2.956987 CGTAGTCGGTGGGAACGT 59.043 61.111 0.00 0.00 0.00 3.99
3176 5414 2.341101 ACTGGCACCTCCGTAGTCG 61.341 63.158 0.00 0.00 37.80 4.18
3177 5415 1.215647 CACTGGCACCTCCGTAGTC 59.784 63.158 0.00 0.00 37.80 2.59
3178 5416 2.283529 CCACTGGCACCTCCGTAGT 61.284 63.158 0.00 0.00 37.80 2.73
3179 5417 2.283529 ACCACTGGCACCTCCGTAG 61.284 63.158 0.00 0.00 37.80 3.51
3180 5418 2.203728 ACCACTGGCACCTCCGTA 60.204 61.111 0.00 0.00 37.80 4.02
3181 5419 3.941188 CACCACTGGCACCTCCGT 61.941 66.667 0.00 0.00 37.80 4.69
3182 5420 2.469465 AATCACCACTGGCACCTCCG 62.469 60.000 0.00 0.00 37.80 4.63
3183 5421 0.251341 AAATCACCACTGGCACCTCC 60.251 55.000 0.00 0.00 0.00 4.30
3184 5422 1.168714 GAAATCACCACTGGCACCTC 58.831 55.000 0.00 0.00 0.00 3.85
3185 5423 0.606401 CGAAATCACCACTGGCACCT 60.606 55.000 0.00 0.00 0.00 4.00
3186 5424 0.889186 ACGAAATCACCACTGGCACC 60.889 55.000 0.00 0.00 0.00 5.01
3187 5425 0.517316 GACGAAATCACCACTGGCAC 59.483 55.000 0.00 0.00 0.00 5.01
3188 5426 0.107643 TGACGAAATCACCACTGGCA 59.892 50.000 0.00 0.00 29.99 4.92
3189 5427 1.234821 TTGACGAAATCACCACTGGC 58.765 50.000 0.00 0.00 36.92 4.85
3190 5428 3.338249 AGATTGACGAAATCACCACTGG 58.662 45.455 14.85 0.00 46.21 4.00
3191 5429 5.408299 TGTAAGATTGACGAAATCACCACTG 59.592 40.000 14.85 0.00 46.21 3.66
3192 5430 5.547465 TGTAAGATTGACGAAATCACCACT 58.453 37.500 14.85 0.00 46.21 4.00
3193 5431 5.856126 TGTAAGATTGACGAAATCACCAC 57.144 39.130 14.85 10.49 46.21 4.16
3194 5432 5.107259 CGTTGTAAGATTGACGAAATCACCA 60.107 40.000 14.85 7.56 46.21 4.17
3195 5433 5.119588 TCGTTGTAAGATTGACGAAATCACC 59.880 40.000 14.85 5.74 46.21 4.02
3196 5434 6.148270 TCGTTGTAAGATTGACGAAATCAC 57.852 37.500 14.85 8.05 46.21 3.06
3197 5435 6.588373 TCATCGTTGTAAGATTGACGAAATCA 59.412 34.615 14.85 0.00 46.21 2.57
3198 5436 6.989437 TCATCGTTGTAAGATTGACGAAATC 58.011 36.000 1.45 7.29 46.00 2.17
3199 5437 6.455646 GCTCATCGTTGTAAGATTGACGAAAT 60.456 38.462 1.45 0.00 46.00 2.17
3200 5438 5.163992 GCTCATCGTTGTAAGATTGACGAAA 60.164 40.000 1.45 0.00 46.00 3.46
3201 5439 4.326278 GCTCATCGTTGTAAGATTGACGAA 59.674 41.667 1.45 0.00 46.00 3.85
3202 5440 3.857665 GCTCATCGTTGTAAGATTGACGA 59.142 43.478 0.00 0.00 46.77 4.20
3203 5441 3.000322 GGCTCATCGTTGTAAGATTGACG 60.000 47.826 0.00 0.00 36.89 4.35
3207 5445 4.572389 GTCATGGCTCATCGTTGTAAGATT 59.428 41.667 0.00 0.00 0.00 2.40
3210 5448 3.261580 TGTCATGGCTCATCGTTGTAAG 58.738 45.455 0.00 0.00 0.00 2.34
3212 5450 3.326836 TTGTCATGGCTCATCGTTGTA 57.673 42.857 0.00 0.00 0.00 2.41
3214 5452 3.770263 AATTGTCATGGCTCATCGTTG 57.230 42.857 0.00 0.00 0.00 4.10
3215 5453 4.789012 AAAATTGTCATGGCTCATCGTT 57.211 36.364 0.00 0.00 0.00 3.85
3320 5584 9.710900 CTTGTAGTCATCACATAGCCATATTTA 57.289 33.333 0.00 0.00 0.00 1.40
3332 5596 7.036996 TGAAAATTTGCTTGTAGTCATCACA 57.963 32.000 0.00 0.00 0.00 3.58
3333 5597 7.928908 TTGAAAATTTGCTTGTAGTCATCAC 57.071 32.000 0.00 0.00 0.00 3.06
3334 5598 8.939201 TTTTGAAAATTTGCTTGTAGTCATCA 57.061 26.923 0.00 0.00 0.00 3.07
3360 5624 9.428097 GGAAATAGTTTCTCAAAAAGCATGATT 57.572 29.630 0.00 0.00 39.59 2.57
3361 5625 8.037166 GGGAAATAGTTTCTCAAAAAGCATGAT 58.963 33.333 0.00 0.00 39.95 2.45
3362 5626 7.378181 GGGAAATAGTTTCTCAAAAAGCATGA 58.622 34.615 0.00 0.00 39.95 3.07
3363 5627 6.591448 GGGGAAATAGTTTCTCAAAAAGCATG 59.409 38.462 4.85 0.00 42.02 4.06
3364 5628 6.498303 AGGGGAAATAGTTTCTCAAAAAGCAT 59.502 34.615 4.85 0.00 42.02 3.79
3365 5629 5.838521 AGGGGAAATAGTTTCTCAAAAAGCA 59.161 36.000 4.85 0.00 42.02 3.91
3366 5630 6.346477 AGGGGAAATAGTTTCTCAAAAAGC 57.654 37.500 4.85 0.00 42.02 3.51
3372 5636 9.031537 GGAAAATTAAGGGGAAATAGTTTCTCA 57.968 33.333 4.85 0.00 42.02 3.27
3373 5637 9.031537 TGGAAAATTAAGGGGAAATAGTTTCTC 57.968 33.333 2.84 0.00 39.46 2.87
3374 5638 8.966155 TGGAAAATTAAGGGGAAATAGTTTCT 57.034 30.769 2.84 0.00 39.59 2.52
3375 5639 9.599866 CATGGAAAATTAAGGGGAAATAGTTTC 57.400 33.333 0.00 0.00 38.94 2.78
3376 5640 9.111519 ACATGGAAAATTAAGGGGAAATAGTTT 57.888 29.630 0.00 0.00 0.00 2.66
3377 5641 8.539544 CACATGGAAAATTAAGGGGAAATAGTT 58.460 33.333 0.00 0.00 0.00 2.24
3378 5642 7.125659 CCACATGGAAAATTAAGGGGAAATAGT 59.874 37.037 0.00 0.00 37.39 2.12
3379 5643 7.500141 CCACATGGAAAATTAAGGGGAAATAG 58.500 38.462 0.00 0.00 37.39 1.73
3380 5644 6.126911 GCCACATGGAAAATTAAGGGGAAATA 60.127 38.462 0.87 0.00 37.39 1.40
3381 5645 5.339118 GCCACATGGAAAATTAAGGGGAAAT 60.339 40.000 0.87 0.00 37.39 2.17
3382 5646 4.019771 GCCACATGGAAAATTAAGGGGAAA 60.020 41.667 0.87 0.00 37.39 3.13
3383 5647 3.517500 GCCACATGGAAAATTAAGGGGAA 59.482 43.478 0.87 0.00 37.39 3.97
3384 5648 3.103742 GCCACATGGAAAATTAAGGGGA 58.896 45.455 0.87 0.00 37.39 4.81
3385 5649 3.106827 AGCCACATGGAAAATTAAGGGG 58.893 45.455 0.87 0.00 37.39 4.79
3386 5650 6.484364 AATAGCCACATGGAAAATTAAGGG 57.516 37.500 0.87 0.00 37.39 3.95
3387 5651 8.006298 TGTAATAGCCACATGGAAAATTAAGG 57.994 34.615 0.87 0.00 37.39 2.69
3388 5652 9.868277 TTTGTAATAGCCACATGGAAAATTAAG 57.132 29.630 0.87 0.00 37.39 1.85
3416 5680 6.144886 GCGTTTCGTAAATTCCTGGAATTTTT 59.855 34.615 38.09 25.40 46.07 1.94
3417 5681 5.631929 GCGTTTCGTAAATTCCTGGAATTTT 59.368 36.000 38.09 26.30 46.07 1.82
3419 5683 4.216687 TGCGTTTCGTAAATTCCTGGAATT 59.783 37.500 25.30 25.30 43.07 2.17
3420 5684 3.754323 TGCGTTTCGTAAATTCCTGGAAT 59.246 39.130 16.15 16.15 33.25 3.01
3421 5685 3.139850 TGCGTTTCGTAAATTCCTGGAA 58.860 40.909 12.26 12.26 0.00 3.53
3422 5686 2.739913 CTGCGTTTCGTAAATTCCTGGA 59.260 45.455 0.00 0.00 0.00 3.86
3423 5687 2.482721 ACTGCGTTTCGTAAATTCCTGG 59.517 45.455 0.00 0.00 0.00 4.45
3424 5688 3.806316 ACTGCGTTTCGTAAATTCCTG 57.194 42.857 0.00 0.00 0.00 3.86
3425 5689 4.823790 AAACTGCGTTTCGTAAATTCCT 57.176 36.364 1.61 0.00 28.86 3.36
3426 5690 5.876576 AAAAACTGCGTTTCGTAAATTCC 57.123 34.783 7.04 0.00 34.43 3.01
3446 5710 9.814899 ATGATCATATGGCAATTTTACGAAAAA 57.185 25.926 6.36 0.00 38.87 1.94
3447 5711 9.814899 AATGATCATATGGCAATTTTACGAAAA 57.185 25.926 9.04 0.00 34.41 2.29
3450 5714 9.500785 TCTAATGATCATATGGCAATTTTACGA 57.499 29.630 9.04 0.00 0.00 3.43
3454 5718 8.590204 TGCATCTAATGATCATATGGCAATTTT 58.410 29.630 9.04 0.00 0.00 1.82
3455 5719 8.129496 TGCATCTAATGATCATATGGCAATTT 57.871 30.769 9.04 0.00 0.00 1.82
3456 5720 7.630728 GCTGCATCTAATGATCATATGGCAATT 60.631 37.037 9.04 3.34 0.00 2.32
3457 5721 6.183360 GCTGCATCTAATGATCATATGGCAAT 60.183 38.462 9.04 0.00 0.00 3.56
3458 5722 5.124936 GCTGCATCTAATGATCATATGGCAA 59.875 40.000 9.04 0.72 0.00 4.52
3459 5723 4.638865 GCTGCATCTAATGATCATATGGCA 59.361 41.667 9.04 13.09 0.00 4.92
3460 5724 4.882427 AGCTGCATCTAATGATCATATGGC 59.118 41.667 9.04 8.89 0.00 4.40
3461 5725 7.715686 ACATAGCTGCATCTAATGATCATATGG 59.284 37.037 9.04 2.58 0.00 2.74
3462 5726 8.664211 ACATAGCTGCATCTAATGATCATATG 57.336 34.615 9.04 10.35 0.00 1.78
3463 5727 9.682465 AAACATAGCTGCATCTAATGATCATAT 57.318 29.630 9.04 2.30 0.00 1.78
3464 5728 9.159364 GAAACATAGCTGCATCTAATGATCATA 57.841 33.333 9.04 0.00 0.00 2.15
3465 5729 7.883833 AGAAACATAGCTGCATCTAATGATCAT 59.116 33.333 1.18 1.18 0.00 2.45
3466 5730 7.172703 CAGAAACATAGCTGCATCTAATGATCA 59.827 37.037 0.65 0.00 0.00 2.92
3467 5731 7.361031 CCAGAAACATAGCTGCATCTAATGATC 60.361 40.741 0.65 0.00 0.00 2.92
3468 5732 6.430308 CCAGAAACATAGCTGCATCTAATGAT 59.570 38.462 0.65 0.00 0.00 2.45
3469 5733 5.761726 CCAGAAACATAGCTGCATCTAATGA 59.238 40.000 0.65 0.00 0.00 2.57
3470 5734 5.761726 TCCAGAAACATAGCTGCATCTAATG 59.238 40.000 0.65 3.92 0.00 1.90
3471 5735 5.933617 TCCAGAAACATAGCTGCATCTAAT 58.066 37.500 0.65 0.00 0.00 1.73
3472 5736 5.129320 TCTCCAGAAACATAGCTGCATCTAA 59.871 40.000 0.65 0.00 0.00 2.10
3473 5737 4.651045 TCTCCAGAAACATAGCTGCATCTA 59.349 41.667 1.02 0.00 0.00 1.98
3474 5738 3.453717 TCTCCAGAAACATAGCTGCATCT 59.546 43.478 1.02 0.00 0.00 2.90
3475 5739 3.801698 TCTCCAGAAACATAGCTGCATC 58.198 45.455 1.02 0.00 0.00 3.91
3476 5740 3.920231 TCTCCAGAAACATAGCTGCAT 57.080 42.857 1.02 0.00 0.00 3.96
3477 5741 3.244526 TGTTCTCCAGAAACATAGCTGCA 60.245 43.478 1.02 0.00 35.58 4.41
3478 5742 3.338249 TGTTCTCCAGAAACATAGCTGC 58.662 45.455 0.00 0.00 35.58 5.25
3479 5743 6.506500 AAATGTTCTCCAGAAACATAGCTG 57.493 37.500 0.00 0.00 35.58 4.24
3480 5744 6.151817 GGAAAATGTTCTCCAGAAACATAGCT 59.848 38.462 2.24 0.00 35.58 3.32
3481 5745 6.325596 GGAAAATGTTCTCCAGAAACATAGC 58.674 40.000 2.24 0.00 35.58 2.97
3482 5746 6.660949 AGGGAAAATGTTCTCCAGAAACATAG 59.339 38.462 2.24 0.00 34.42 2.23
3483 5747 6.552008 AGGGAAAATGTTCTCCAGAAACATA 58.448 36.000 2.24 0.00 34.42 2.29
3484 5748 5.397360 AGGGAAAATGTTCTCCAGAAACAT 58.603 37.500 0.00 0.00 34.42 2.71
3485 5749 4.803452 AGGGAAAATGTTCTCCAGAAACA 58.197 39.130 0.00 0.00 34.42 2.83
3486 5750 5.301805 TGAAGGGAAAATGTTCTCCAGAAAC 59.698 40.000 0.00 0.00 34.42 2.78
3487 5751 5.454062 TGAAGGGAAAATGTTCTCCAGAAA 58.546 37.500 0.00 0.00 34.42 2.52
3488 5752 5.060427 TGAAGGGAAAATGTTCTCCAGAA 57.940 39.130 0.00 0.00 34.42 3.02
3489 5753 4.722526 TGAAGGGAAAATGTTCTCCAGA 57.277 40.909 0.00 0.00 34.42 3.86
3490 5754 5.990120 ATTGAAGGGAAAATGTTCTCCAG 57.010 39.130 0.00 0.00 34.42 3.86
3491 5755 6.745794 AAATTGAAGGGAAAATGTTCTCCA 57.254 33.333 0.00 0.00 34.42 3.86
3492 5756 7.602644 GGTAAAATTGAAGGGAAAATGTTCTCC 59.397 37.037 0.00 0.00 34.42 3.71
3493 5757 8.147704 TGGTAAAATTGAAGGGAAAATGTTCTC 58.852 33.333 0.00 0.00 34.05 2.87
3494 5758 8.028652 TGGTAAAATTGAAGGGAAAATGTTCT 57.971 30.769 0.00 0.00 33.92 3.01
3495 5759 8.147704 TCTGGTAAAATTGAAGGGAAAATGTTC 58.852 33.333 0.00 0.00 0.00 3.18
3496 5760 7.931407 GTCTGGTAAAATTGAAGGGAAAATGTT 59.069 33.333 0.00 0.00 0.00 2.71
3497 5761 7.441836 GTCTGGTAAAATTGAAGGGAAAATGT 58.558 34.615 0.00 0.00 0.00 2.71
3498 5762 6.586082 CGTCTGGTAAAATTGAAGGGAAAATG 59.414 38.462 0.00 0.00 0.00 2.32
3499 5763 6.492087 TCGTCTGGTAAAATTGAAGGGAAAAT 59.508 34.615 0.00 0.00 0.00 1.82
3500 5764 5.828859 TCGTCTGGTAAAATTGAAGGGAAAA 59.171 36.000 0.00 0.00 0.00 2.29
3501 5765 5.239963 GTCGTCTGGTAAAATTGAAGGGAAA 59.760 40.000 0.00 0.00 0.00 3.13
3502 5766 4.758165 GTCGTCTGGTAAAATTGAAGGGAA 59.242 41.667 0.00 0.00 0.00 3.97
3503 5767 4.041198 AGTCGTCTGGTAAAATTGAAGGGA 59.959 41.667 0.00 0.00 0.00 4.20
3504 5768 4.324267 AGTCGTCTGGTAAAATTGAAGGG 58.676 43.478 0.00 0.00 0.00 3.95
3505 5769 6.164176 AGTAGTCGTCTGGTAAAATTGAAGG 58.836 40.000 0.00 0.00 0.00 3.46
3506 5770 7.653767 AAGTAGTCGTCTGGTAAAATTGAAG 57.346 36.000 0.00 0.00 0.00 3.02
3507 5771 8.441312 AAAAGTAGTCGTCTGGTAAAATTGAA 57.559 30.769 0.00 0.00 0.00 2.69
3508 5772 8.441312 AAAAAGTAGTCGTCTGGTAAAATTGA 57.559 30.769 0.00 0.00 0.00 2.57
3545 5809 9.908152 GTAATCACCTTGCAATAAAAAGTACTT 57.092 29.630 1.12 1.12 0.00 2.24
3546 5810 8.520351 GGTAATCACCTTGCAATAAAAAGTACT 58.480 33.333 0.00 0.00 42.11 2.73
3547 5811 8.301002 TGGTAATCACCTTGCAATAAAAAGTAC 58.699 33.333 0.00 0.00 45.98 2.73
3548 5812 8.410673 TGGTAATCACCTTGCAATAAAAAGTA 57.589 30.769 0.00 0.00 45.98 2.24
3549 5813 7.296628 TGGTAATCACCTTGCAATAAAAAGT 57.703 32.000 0.00 0.00 45.98 2.66
3550 5814 8.188531 CATGGTAATCACCTTGCAATAAAAAG 57.811 34.615 0.00 0.00 45.98 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.