>input_sequence_46571
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---------------------------ATGCCGAAGATAGCGCTGGGCCACCGCCGCGAGGCGTCCGACCCCGGCTGCCT
CCGGGCCGTGCTCGGCGAGCTCGTCCTCACCTTCCTCTTCGTCTTCGTCGGCGTGGGCTCCGCCATCGTCGGAGGTACGT
GCGG-------GCAGTGCTCCTCCG-CCCACTTTAATGCCGGCTACATCCGTTCGTTCCGTGCATGCTGTGCACAGCCCC
TGAATCAACCGTTCAATATTTTTCTATTACT-TTGTTTAGTTGGTTATACAACTAGGTGGGGCACACACACCTACCAATT
ACAGGACGACACGTGTGTTTTGCCCC-TAGAAAAATGGAAACACCTGCGCGAAGTTTGGATATCGTAAAAAAATGACAAA
GAAGGCGTCTGAGGAATCGGTTGAGATAGAAAGTGACAGAGTAGAACCAGTAGGTTGTGAGCGGTGGGTTCCTTGCCACG
TCGAAGTCTCAAAATTTACAGCACCAATGCTTGCATAT--TATATTGGTTTACGAAGCTCGCACGTCACCATGTGGATTA
TTGAGTTGTCAAGTTTCTTCTCCCTC------------------------------------------------------
---------------------------------------------------------TTTGTTGCGGCAAAAAAAAAGTT
AATATTAAGCTTAATT---TCAGTTAATAAAGTACTGGCATGCAT--GTCATCTCGCTTTGAAGCACCTCCTGGGTCGGT
GATGCGGCACTGTATTGTATAGACTTCAATCAAGAGAACACCTGATCGAGAGATATGTCGCGACCACCTAGAGCTTCAGA
TTTGTCATGTCCAGTCCAGTGCTCCCGTGAAGATACCCTTCCATTATGTTCCTTCCATATCACCCGCATTTGCCGTTTGA
TGGCACGATCGTCTTGAGAAAATGCAGTGTTGAACCAGCGTTTCAGGATCCGCAGGCTGCTGATTTCTTTTGTGCA-TT-
GTTAATCAGGACAAGCAGTCGCAGCCGGAGGCGACACGTCGGCGGCGTTGATCGCGGTGGCGCTGGGCCATGCGCTGGTG
GTGGCGGTGTTCGCAACCGCAGGGTTCCACATCTCCGGCGCCCACATGAACCCAGCCGTCACGCTCAGCCTCGCCGTCGG
CGGCCACATCACCCTCATCCGCGCCGGCTTCTTCGTGCTCGCCCAGATGCTCGGCTCCTCCCTCGCCTGCATCCTGCTCA
GGGCCCTCACCGGCGGACTGGTACGTCGCCGTCGTTCCTCCTACCTGTCACATGCATGCCAGCCTGACAACCTCAAGCTA
C-----TACCACAATAGTAAGTGCCATTGTTGACGATCTGTGCACGCTCCGGCGTGTCACGCTGCAGGTCACTCCGGTGC
ACGCGCTGGCGGCGGGCGTGGGCCCGATCCAGGGCGTGGTGGCGGAGGTCGTCTTCACCTTCACGCTGCTCTTCACCATC
TACGCCGCCATCCTCGACCCCAAGAGCTCCGCGCCAGGGTTCGGCCCGCTGCTCACCGGCCTCCTCGTCGGTGCCAACAC
CATCGCCGGCGGCGCGCTCACCGGCGCGTCCATGAACCCCGCGAGGTCCTTCGGGCCGGCGCTGGCCTCCGGAAACTGGG
CCAACCACTGGGTCTACTGGGTCGGCCCGCTCGCCGGCGGGCCCCTCGCCGTGGCCGTCTACGAGTTCATCTTCACCGTC
CCGGCGACGCACCAGCAACTTCCAACGGTGGAGTGA--------------------------------------------
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>chr3A_1_TraesCS3A01G155800
TAATTATACTAAAAAAACTACTTATTTCAGTCCACAAGATGTTCTAACCTTTTTATGAATCGGTTGTATATAGACACATG
TTAAGGTGTTTATTCGTCATTTTGGTCCCTACGTAGTTCAAAATATCTTATATTTGTGAACGGAGGGAATAAATTTGAGA
AAACAAATAATTTGTGTTTTCATGTTAAGTTTTTTGTTTACACAATACAATCGCAAATGATCACATACACGCACACACAC
TCCCCCTATGAAAGTAAGCATGCACACTACACTCCTATGAGCACCTTCAAGATACTGAACCGACACAACATTTTGAAATC
GATAAAGTCACCAAATACGCATCGTAGTCGAAGGAAACGTCTCCTCCTCACCAGAAAGCTTAAAAATAAATCCAAAAAAA
TGCGAGCACCAGTAAAGTCTAGGAACTTGAAATCTGATGGGTTGGTTCCACCGACCATCTGAGCAACGATCAATTCACCA
TGTTAAGTTGGTTGGCCCGTGTGCAAAGTACAGTCACGCCCTACCTTGCAATGGTATTTTTTGACAGAAAAAATATGTAC
ATGTTTTTGTACTAGTTACTTACAAATCAAAC------------------------------------------------
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--------------GGGCTGGCCGGAGAGGAGGACCTACGTGTTCCAAACTTTTACCATTGTAGTTTCAAAAAAAAAAAA
CTTTTTACCATTGTGATCTGCAACTGCAACAGGGAAGACACCAGGCGTGACCTGTGTGCAGTGCACCTGCATGCTCCAGC
TGACGTCGTACG-TGCACAGCTCTTTTGCACCGCATGGAAGAAGAATATTTGAGGCGCGCCATTATAGCCTTTTGACTTG
CCAAATTAAATCCCCCGTACAAAAATATATCCTGCCTATATATAGCCGGCGTCCCCCAGTGAACGAGCACACACAAACAC
----ACAAACATCCAGCGCGCTCGGCATCCACCGATCGATTGCTTCTGTCTTGGCCATCCGCTGATAAGATCATCGACAG
GCGCCTCCCCCCAGGGATCGATCGAAGATGCCGAAGATAGCGCTGGGCCACCGCCGCGAGGCGTCCGACCCCGGCTGCCT
CCGGGCCGTGCTCGGCGAGCTCGTCCTCACCTTCCTCTTCGTCTTCGTCGGCGTGGGCTCCGCCATCGTCGGAGGTACGT
GCGG-------GCAGTGCTCCTCCG-CCCACTTTAATGCCGGCTACATCCGTTCGTTCCGTGCATGCTGTGCACAGCCCC
TGAATCAACCGTTCAATATTTTTCTATTACT-TTGTTTAGTTGGTTATACAACTAGGTGGGGCACACACACCTACCAATT
ACAGGACGACACGTGTGTTTTGCCCC-TAGAAAAATGGAAACACCTGCGCGAAGTTTGGATATCGTAAAAAAATGACAAA
GAAGGCGTCTGAGGAATCGGTTGAGATAGAAAGTGACAGAGTAGAACCAGTAGGTTGTGAGCGGTGGGTTCCTTGCCACG
TCGAAGTCTCAAAATTTACAGCACCAATGCTTGCATAT--TATATTGGTTTACGAAGCTCGCACGTCACCATGTGGATTA
TTGAGTTGTCAAGTTTCTTCTCCCTC------------------------------------------------------
---------------------------------------------------------TTTGTTGCGGCAAAAAAAAAGTT
AATATTAAGCTTAATT---TCAGTTAATAAAGTACTGGCATGCAT--GTCATCTCGCTTTGAAGCACCTCCTGGGTCGGT
GATGCGGCACTGTATTGTATAGACTTCAATCAAGAGAACACCTGATCGAGAGATATGTCGCGACCACCTAGAGCTTCAGA
TTTGTCATGTCCAGTCCAGTGCTCCCGTGAAGATACCCTTCCATTATGTTCCTTCCATATCACCCGCATTTGCCGTTTGA
TGGCACGATCGTCTTGAGAAAATGCAGTGTTGAACCAGCGTTTCAGGATCCGCAGGCTGCTGATTTCTTTTGTGCA-TT-
GTTAATCAGGACAAGCAGTCGCAGCCGGAGGCGACACGTCGGCGGCGTTGATCGCGGTGGCGCTGGGCCATGCGCTGGTG
GTGGCGGTGTTCGCAACCGCAGGGTTCCACATCTCCGGCGCCCACATGAACCCAGCCGTCACGCTCAGCCTCGCCGTCGG
CGGCCACATCACCCTCATCCGCGCCGGCTTCTTCGTGCTCGCCCAGATGCTCGGCTCCTCCCTCGCCTGCATCCTGCTCA
GGGCCCTCACCGGCGGACTGGTACGTCGCCGTCGTTCCTCCTACCTGTCACATGCATGCCAGCCTGACAACCTCAAGCTA
C-----TACCACAATAGTAAGTGCCATTGTTGACGATCTGTGCACGCTCCGGCGTGTCACGCTGCAGGTCACTCCGGTGC
ACGCGCTGGCGGCGGGCGTGGGCCCGATCCAGGGCGTGGTGGCGGAGGTCGTCTTCACCTTCACGCTGCTCTTCACCATC
TACGCCGCCATCCTCGACCCCAAGAGCTCCGCGCCAGGGTTCGGCCCGCTGCTCACCGGCCTCCTCGTCGGTGCCAACAC
CATCGCCGGCGGCGCGCTCACCGGCGCGTCCATGAACCCCGCGAGGTCCTTCGGGCCGGCGCTGGCCTCCGGAAACTGGG
CCAACCACTGGGTCTACTGGGTCGGCCCGCTCGCCGGCGGGCCCCTCGCCGTGGCCGTCTACGAGTTCATCTTCACCGTC
CCGGCGACGCACCAGCAACTTCCAACGGTGGAGTGAAAGGAGCTCGTTCTCCTGGGGAAGCTCTCGCCTCTCGGTAAGTT
GTGGGCCGTTGGATGATCAACCGCTCCGACAAAAGCTGTTATCTACGGTATATGATACATCGAGTGTTCAAGTGTGTTTG
CCCCGCGTGTTTGAGGGCTGGCTTGATTTGTGCGTGATGGG---TCGTGTGAAGAATATGCGT-----GCGTGCACGCAT
GTGCGTCTCAATGTTTCGTTCGGCCAATGAGCCGTGGAAGTAAC-AACATTGTTTCTTTCACCGTAAGTTTGTAAGTGTA
TAAGGCCTCCCCGTGCATGGAAATATACGTGGAATATACATACCTGTTATTACTA---TCTCGTTATATAATTTTTTGTA
TCCTTCTTTTTACG----AAAAAACTTCTAATCTATTCATGT-----------AGCTAGTCAACTACGTATTGTGA----
---CCAAAATACTCTTTTTAACTAGAGGCTACACCCGAGAACTAAGCCTAGACTTGGCGTTGGTGCTCGCATTTTTTTGG
ATTTAATTAAA-CTTAGCGGTGATGTTCGTTTACTGAGAGGACACGTTCCCACCGACTACGGAGGTGCCAGTGGTGATTT
CGTCAATCTTACAACGATGAGCCATGACAATTTTT-----------------------TTAACATACCAAGACTAATTAT
GTGACTATTTCACATTTTTCTGTATTT--TTTTGTCATTGCCTTATGAAAACATTTTTT-TGGTAAATATGGCTATGTGA
TGACTACAAGCAAATTTTCAAAAAATCATGCTTTTTGAGAAACTATTTCCCCTTAATTTTCCATGTGGCTATTACAAAAA
AAAATTCCAGGAATTTACGAAACGCAGTTTTTTTCGTAAAATTGCCATATGATCATTAGATGCAGCTATGTTTCTGGAGA
ACATTTTCCCTTCAATTTTACCAGACGACTACTTTTTTCTTGACATTAAAGTACTTTTTATTGCAAGGTGATTACCATGT
TATCTTTTTTTTAGACAATACCATGTTATCTTTACAAGAGTATCAACAGGTTTTTTT
>chr3B_1
TAATTATACT-AAAAAACTGCTTATTTCAGTCCACAAGATGTTCTAAC-TTTTTGTGAATCCGTTGAATATAGACACATG
TTAATGTGTTTATTCGTCATTTTGGTCCCTCCGTAGTTTAAAATGTCTTATATTTGTGAACGGAGCGAGTAAATTTGAGA
AAACAAATAGTTTGTGTTTTCATATTAAGTTTTTTTG---CACAATACAATCGCAAATGATCACATACATGCATATACAC
TCCCCCTATGAAAGTAAGCATGCACACCACACTCCTATGAGCACCTCCAAGATACTGAGCCGACACAACATCTTCAAATC
GACGAAGTCACCAAATACGCCTCGTAGTTGAAGGAAACGTCTCCTCCTCACCAAAATGCCT-AAAATAAATCCAGAAAAA
TGGGAGCACCGGTAAAGTCTAG-AACTTGAAACCTGGT-GGTTGGTTCCACCGGCCATCTGAGCAACGATCAGTTCACCA
TGTTAAGTTGGTTGACCGGTGTGCAAAGTACAGTCACGTCCTACCTTGCAGTGGTA-TTTTTGACAGAAAAAATATATAC
ATGTTTT-GTACTGGTTACTTACAAATCAAACTTGTCTGGATTTGAAGTCAAAAACCTGCATCGGACTGGGGTTGGCGGC
GGATTTTCGTGTTTTGACCCTTTTAGCGAAGAATTTCAGGATCTGGCCCTATTTCAATTTATTTTTTTGAAATCTGACCC
TTTTTCCAACTGCCGGGGGCTCAGCAGTAGGCTTACATAGCCTACCGCCATGGGTCTCGGCAATCCACGCCAGTAGCGCA
AACGACCGCCGTCCCCCTCCGTCCCACCCTATCGTTGTTGGTCCTGGCGGTAGGGTGTCTAATCCTGGCGGTAGGGTGTG
GACAGTTATTGGGCGCGGCCGGCCACCCCACCCCCTTCTCCCCCACACCCAGCCGCCCCAAGAACGTCAGTTCTTCTCTC
GCCCCCTCTCTCATCTCCTCCACTTCTCCCCTTGGATCTACTTTGTTTCTTTATCGTTCTTGTGGATCGAAATGGCCCCG
AAAAGAGAAAAGTAAGCTCCTCCGATCCCTCAAATTAGTTTTAGTCAAATAGCTTCCGATTTAGTCCTCGGTGGACGATA
AAAGATATCGCACGGCTGGAGGAGGATGCCCCTGAGGAAGAGGCCTACCAGGCCAGCATCAGAGACATGAGTGGATTTAG
GAGTTTAAATCCCCTGATCAACAGAGTGGTAAGTTGTGTTCTTTTGTCCTGAACCGGCGGTTTTATATAATTTATGTTGT
ATGTCATTGTGACTCACTTATGCCTTCACAGTCCGGCGAGCTGAACGGATGCATCTTTGATGGCTCGGATGCACTTGGTC
GTGCCCCCGGGAACGGAGATTCTGAGAACAACATGAGGGAGACGGTGAAGGTAACATTTATGCCGCCTAGAAATACCCTG
TGTTCTTGTTCATTTGCAACAATAAATCTGATCAGTATTATGCGCTTCTTTCATCATGACTGCAGAAGTTCATGAAGCGT
TGTCGCAAGCTGGTAGGCCTGCTTGGGTGCGCGGGCTCGGTTGAAGCTCATGATCCTGCAGTCACAGGGGGTAACATCGC
TTCATCGAGCCATGTTGCCTCGGCGTCTAGGTTGTTTGAGGAGGAGGAGGTGGTGGAGGAGGAGGAGGCCCATGAAGAAG
AAGAGGAGGAGGAGAGCAATGGGGAGGAGGAGTACGATGAAGATTACGGACCTCCACCAACTCAACCATCTCAGCTTCCG
AAGAGAAATCAACCAAAGAAGGATTGGCAAAGTCCATCCCCATTCCAGAAACCGATTCCTCGAGGAGGGCGCAAGAAGCC
TGAAGAGACTGTTCTAAGAAGAACGATGACCGTACCTCTAAGAGGGGAAGAAGCAAGTAATTGCGGTCTTGGCTTGTTAG
CCTGCTTGTGTTAGTTAGGGAGAAACTATGTGGAACAGTGGAACCGTTTGTTGGCTTTGCGAAACTGTTTGTGAAACTAC
TTGCGTTAGTTGGGGTTGTCAAACTATATGGACAAGTTTGCTATTTGCTATTTGTGAAATTATGTGAAACCGTTTGCTAT
TTGCTATGTGTGACATGTGTATTAGTTCAACCTTTATTAACATGTGAGCTATGCATATTTTGCTATTTGTGAAACTATGT
GAAACTACTCGAGTGTGATACATATTATATTGTGTGAGCTCTGCATATTTAAGGCTCTTAAATATATATTATATTGTATT
CTTTGTTGTGATAAATTTTTAGAAAAATAAAATGCACTGAAACTTGCAAAATTTTAAAACCAAAGACCCTACCGCCAAGC
CCTTGGCGGTAGGATCTCACAACCTACCGCCAGGGATCTGCGGTTTTCGATTACAGCAAGTTTCCACGCAAAACCCCTAG
GACCCTACTGCCACAGGGCTCGGCGATAGGGTCCCATAACCTACCGCCAAGGCATGTGGCGGTAGGGTGGTGTGCTGGCC
GTTACTTCACGGCTGTGGCTGTCTATACTACCGCCAGTACCCCTGACGGTAGGTTGCCTGACCCTACCGCCGAGCCCTGT
GACGGTAGCAAAAGGATCTAATTTCAAAAAAAAATTAACAGGGTCAGATCTTGATTTTATTTGCTAAAAAGGATCAAAAC
ACGAAATTTTGCCGGGGCTGGCCGGAGAGGAGGACGTACGTGTTCCAGCT------------------------------
-TTTTTACCATTGTGATCTGCAACTGCAACAGGGAAGACACCAGGCGTGACCTGTGTGCAGTGCACCTGCATGCTCCAGC
TGA-----------------------------------------------------------------------------
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>chr3D_660
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-TTTTTACCATTGTGATCTGCAACTGCAGCAGGGAAGACACCAGGCGTGACCTGTGTGCA-----CCTGCATGCTCCAGC
TGACGTCGTACGGTGCACAGCTCTTTTGCACCGCAAG---GAAGAATATTTGAGGCGCGCCATTATAGCCTTTTGACTTG
CCAAATTAAATCCCCCGTACGAAAATATATCCTGCCTATATATAGCCGGCCTCTCCCAGTGAACGAGCACACACACACAA
ACACAGAAACGTCCAGCGCGCTCGGCATCCATCGATCGGTTGCTCCTGTCTTGGCCATCCGCTGACAAGATCATCGACAG
GCGCCTCCCCCCAGGGATCGATCGGAGATGCCGAAGATAGCGCTGGGCCACCGCCGCGAGGCGTCCGACCCCGGCTGCCT
CCGGGCCGTGCTCGGCGAGCTCGTCCTCACCTTCCTCTTCGTCTTCGTCGGCGTCGGCTCCGCCATCGTCGGAGGTACGT
GCGAGCACGGAGCAGTGCTCCTCCG-CCAC--TTAATGCCGGCCACATCTGTTCGTTCCGTGCATGCAGTGCACACACCC
TGAAGCAACCGTTCGATTTGTTTATTAGTTCATTATTTAGTTTTTGTTACAACTAGGTGGGGCACATACGCGCGCCAACT
ACGGGACGACACGTGTGTTTTGCCCG-TAGAAAAATGGAAGCACCTGCGCCAAGTTTGGATATCGTAAAAAAATGACAAA
-AAGGCGTCTGAGGAATCGGTTGAGATAGAAAGTGACAGACTAGAACCAGTAGGTTGTGAGCGGTAGGTTCCTTGCCACG
TCGAAGTCTCAAAATTTACAGCACCAATGCTTGCATAT--TATATTGGTTTATGAAGCTCGCACGTCACCATGCGGATGA
TTGAGTTGTCAAGTTTCTTCTCCCTC------------------------------------------------------
---------------------------------------------------------CTTTTTGCGGCAAAAAAGAGTAC
TGGCATGCA--TAATTTCATCAGTTAATAAAGTACTGGCATGCATATGTCATCTCGCG----------------------
---GCGGCACTGTATTGTATAGACTTTAATCGAGAGAA----------------ATGTCGCGACCACCTAGAGCTTCAGA
TTAGTCATGTCCAG-----TGCTCCCGTGAAGATACCCTTCCATTATGTTCCTTCCATATCACCCGCATTTGCGGTGTGA
TGGCACGATCGTCTTGAGAAAATGCAGTGTGGAACCAGCGTATCAGGATCCGCAGGCTGCTGATTTCTTTTGTGTA-TTC
GTTAATCAGGACAAGCAGTCGCTGCCGGAGGCGACACGTCGGCGGCGTTGATCGCGGTGGCGCTGGGCCATGCGCTGGTG
GTGGCGGTGTTCGCGACCGCAGGGTTCCACATCTCCGGCGCCCACATGAACCCGGCCGTCACGCTCAGCCTCGCCGTTGG
CGGCCACATCACCCTCATCCGCGCCGCCTTCTTCGTGCTCGCCCAGATGCTCGGCTCCTCCCTCGCCTGCATCCTGCTCA
GGGCCCTCACCGGCGGACTGGTACGTCG-CGTCGATCCTCCTACCTGTCACATGCATGCC----TGACCACCTCAAGGTA
CTACTGTACCACAATAGTAAGTGCCATTGTTGACGATCTGTGCACGCTCCGGCGTGTCACGCTGCAGGTCACTCCGGTGC
ACGCGCTGGCGGCGGGCGTGGGCCCGATCCAGGGCGTGGTGGCGGAGGTCGTCTTCACCTTCACGCTGCTCTTCACCATC
TACGCCGCCATCCTCGACCCCAAGAGCTCCGCGCCAGGGTTCGGCCCGCTGCTCACCGGCCTCCTCGTCGGCGCCAACAC
CATCGCTGGCGGCGCGCTTACCGGCGCGTCCATGAACCCCGCGAGGTCCTTCGGGCCGGCGCTGGCCTCCGGAAACTGGG
CCAACCACTGGGTCTACTGGGTCGGCCCGCTCGCCGGCGGGCCCCTCGCCGTGGCCGTCTACGAGTTCATCTTCACCGTC
CCGGCGACGCACCAGCAGCTTCCAACGGTGGAGTGAAAGGAGCTCGTCCTACTGGGGAAG-------CTCTCGGTAAGTT
GCGGGCCGTTGGATGATCAACCGCTCCGACCAAAGCTGTTATCTACGGTATATGATACATCGAGTGTTCAAGTGTGTTTG
CCCCGCGTGTTTGAGGGCTGGCTTGATTTGTGCGTAATGGGTGGTCGTGTGAAGAATATGCGTGCGGTGCGTGCACGCAT
GTGCGTCTCAATGTTTCGTTCGGCCAATGAGCCGTGGAAGTAGC-AACATTGTTTCTTTCACCGTAAGTTTGTAAGTGTA
TAAGGCCTCCCCGTGCATGGAAATATATGTGGAATATACATACATGTTATTACTACTATCTCGTTGTATCATCTTCTGTA
TTCCTTTCTCTTGACGGAAAAAAACTTACAATCCATTCATCTTCAATCATGACAGTTAGTCAACTACGCACAACTGGTTG
CAGCCAAAAGGCTCTTTTTAACTAGAGGTGACACCCGAGA-------------TTGGCGTGGGTGCTCGCATTTTCTTGG
ATTTAATTCAGCCTTTTTGATGATGTTCGTTGATTACGGAGGCTCGTGTACTT---------------------------
-GTCTATTTGAAGATGATGTGCCACGACAAATTATTTAACATACCATGGCAATTTATCTTAACATACCATGACAAATTAT
GTGACTATTTCACAAGTTTTCTTTATTCCTTTTGTCATTGTCTTTTGAAATCATTTTTTGTGGCAAATATGGCTA-----
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>chr3B_736
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-----------------------------------------------------------------------------AGC
TGACGTCGTACG-TGCACAGCTCTTTTGCACCGCATG---GAAGAATATTTGAGGCGCGCCATTATAGGCTTTTGACTTG
CGAAATTAAATCCCCGGTACGAAAACAC--CCTGCCTATATATAGCCGGCGTCTCCCAGTGAACGAGCACAC--------
ACAAACAAACATCCAGCGCGCTCGGCATCGGTCGATCGGTTCCTCCTGCCTTGGCCATCCGCTGACAAGATCATCGACAG
GCGCCTCCCCCCAGGGATCGATCGAAGATGCCGAAGATAGCGCTGGGCCACCGCCGCGAGGCGTCGGACCCCGGCTGCCT
CCGGGCCGTGCTCGGCGAGCTCGTCCTCACCTTCCTCTTCGTCTTCGTCGGCGTCGGCTCCGCCATCGTCGGAGGTACGC
-----------GCAGTGCTCCTCCGTCCAC--CTAATGCCGGCTAAATCTGTTTGTTCCGTGCATGCAGTGCACACACCC
TGAAGCAATCGTTCTATAATTTTCTATTGCT-TTGTTTAG--TTAGTTACAGCTAGGTGGGGCACACACACCTACCAAGT
ACGGCACGACACGTGTGTTTTGCCCCGTAGAAAAATGGAAACACCTGTGCCAAGTTTGGATATCGTAAAAAAATGACAAA
GAAGGCGTCTGAGGAATCGGTTGAGGTAGAAAGTGACAGAGTAGAACCAGTAGGTTCTGAGCGGTTGGTTCCTTGCCACG
TCGAAGTCTCAAAATTTACAGCACCAATGCTTGCATATATTACACTGGTTTTTGAAGCTCGCACGTCACCAATGCTTGCA
TATATTTACAAAGGGTTGATGATTTGCCCCATGATTTGTCTCAATGGCAGTGGCTCCAGGCCCCACCCGGCAGTCTCTCA
GGGGAGATAAATGATCAAATGAAGAAGTAAAGTGTGGCAAAAGATCAATCTTTTCCTTTTTTTTCTGGCAAAAAAGGGTT
AATATTAAGCTTAATTTCATCAGTTAATAAAGTATCGGCATGCATATGTCATCTCGCG----------------------
---GCGGCACTGTATTGTATAGACTTTAATCAAGAGAACACCTGATCGAGAGATATGTCGCGACCAGCTAGAGCTTCAGA
TTAGTCATGTCCAG-----TGCTCCCGTGAAGATACCTTTCCATTATGTTCCTTCCATATCACCCGCATTTGCGGTGTGA
TGGCACGATCGTCTTGAGAAAAAGCAGTGTTGAACCAGCGTTTCAGGATCCGCAGGCTGCTGATTTCTTTTGTGTGTTT-
GTTAATCAGGACAAGCAGTCGCAGCCGGAGGCGACACGTCGGCGGCGTTGATCGCGGTGGCGCTGGGCCATGCGCTGGTG
GTGGCGGTGTTCGCGACCGCAGGGTTCCACATCTCCGGCGCCCACATGAACCCGGCCGTCACGCTCAGCCTCGCCGTTGG
CGGCCACATCACCCTCATCCGCGCCGGCTTCTTCGTGCTTGCCCAGATGCTCGGCTCCTCCCTCGCCTGCATCCTGCTCA
GGGCCCTCACCGGCGGACTGGTACGTCG-CGTCGATCCTCCTACATGTCACATGCATGCCAGCCTGACAACGTCAAGGCA
C-----TGCCACAGTAGTAAGTGCCATTGTTGACGATCTGTGCG---TCCGGCGTGTCACGCTGCAGGTCACTCCGGTGC
ACGCGCTGGCGGCGGGCGTGGGCCCGATCCAGGGCGTGGTGGCGGAGGTCGTCTTCACCTTCACGCTGCTCTTCACCATC
TACGCCGCCATCCTCGACCCCAAGAGCTCCGCGCCAGGGTTCGGCCCGCTGCTCACCGGCCTCCTCGTCGGCGCCAACAC
CATCGCCGGCGGCGCGCTCACCGGCGCGTCCATGAACCCCGCGAGGTCCTTCGGGCCGGCGCTGGCCTCCGGAAACTGGG
CCAACCACTGGGTCTACTGGGTCGGCCCTCTCGCCGGCGGGCCCCTCGCCGTGGCCGTCTACGAGTTCATCTTCACCGTC
CCGGCGACGCACCAGCAGCTTCCGACGGTGGAGTGAAAGGAGCTCGTCCTCCTGGGGAAG-------CTCTCGGTAAGTT
GTGGGCCGTTGGATGATCGACCGCTCCGACCAAAGCTGTTTTCTACGGTATATGATACATCGAGTGTTCAAGTGTGTTTG
CCCCGCGTGTTTGAGGGCT-GCTTGATTTGTGCGTGATGGG---TCGTGTGAAGAATATGCGTGCGGTGCGTGCACGCAT
GTGCGTCTCAATGTTTCGTTCGGCCAATGAGCCGTGGAAGTAGCAAACATTGTTTCTTTCACCGTAAGTTTGTAAGTGTA
TAAGGCCTCCCCGTGCATGGAAATATATGTGGAATATACATATCTGTTATTACTA---TCTCGTTGTATCATTTT-----
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>SNPs
----------S--------S----------------------------S-----S------S----S-------------
----S-------------------------S-------S-----S--------------------S--S-----------
---------S-------------S-----------SSSSS-----------------------------S---S-S----
---------------------------S------------------S-----------S------------S--S-----
--SS----------------S-------S------------------------S--S--S-S------------S-----
--S-------S-----------S---------S---S-S--------------S------------------S-------
--------------S--S--------------------S-----------S-----S-------------------S---
-------S-----S------------------------------------------------------------------
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-----------------------------------S-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S-------------------------------------------------------------------------------
-------------------------------------SSS----------------------------------------
--------------------S--------------------------------S---------------------S---S
-------------------------------S------S-----S--------------------S--------------
--------------------------------------------------------------------------------
------------------------------------------------------S-------------------------
---S------------------------SSSS-----------------S-----------------S-------SS---
----S---------S-------------S-------------SS-SS-------------------------------S-
--S-----------------------------------------------S-----------------------------
-----------------------------------------------------------------S--------------
----------------------------------------------------S--------------------S----S-
--------------------------------------------------------------------------------
------------------------------------------------------------S---------------S---
---------------------------------------------------------SSSSSSSSSSSSSSSSSSSSSSS
SSS-----------------------S-----------------------------------------------------
--S-----------SSSSS------------------------------------------------------S--S---
--------------------------------------------------------------------------S-----
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--------------S--------------------------------------S-----------------------S--
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----------------------------S-----S------------------------------------------S--
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-----------------------------------------------------------------------S--------
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-----------------S-----------------------------S------------SSSSSSS-------------
------------------------------S-------------------------------------------------
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------------------------------------------S-------------------------------------
---------------------------S-------------------------------------S---S-----S----
-S-S-S-S-S-SSS-------------SS----S------S--------------S------------S-SSSSSS----
---------SS-----------------SS----------SSSSSSSSSSSSS-------S--------------S----
--------S-S----SSS-S-----------S-S-SS-SS-S-S---SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S---S--S-S-SS-S----S----S-----S--S-----------------------------------S---S------
--------------SS---SSS-SS---------------S---S-----S------------S-----------SSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_2840
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--------------------CTCTTTTGCACCGCATGGAA----------------------------------------
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>reverse_3994
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--------------------------------------------------------------------------------
-------------------------------------------------------------------------CGTTTGA
TGGCACGATCGTC-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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---------------------------------------------------------
>forward_3359
--------------------------------------------------------------------------------
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-----------------------------------------------------------GGGCACACACACCTACCAAT-
--------------------------------------------------------------------------------
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---------------------------------------------------------
>reverse_5394
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------CTGAGAGGACACGTTCCCAC---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------
