Multiple sequence alignment - TraesCS3A01G146500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G146500 chr3A 100.000 2255 0 0 1 2255 128286332 128288586 0.000000e+00 4165
1 TraesCS3A01G146500 chr3D 89.914 1854 112 32 417 2255 122455128 122456921 0.000000e+00 2318
2 TraesCS3A01G146500 chr3D 93.434 396 11 9 1 389 122454747 122455134 6.990000e-160 573
3 TraesCS3A01G146500 chr3B 90.242 1117 62 20 333 1435 174147123 174148206 0.000000e+00 1415
4 TraesCS3A01G146500 chr3B 92.330 339 14 1 1 339 174145595 174145921 2.620000e-129 472
5 TraesCS3A01G146500 chr3B 85.779 443 31 11 1686 2118 174148912 174149332 7.390000e-120 440
6 TraesCS3A01G146500 chr3B 83.704 270 30 11 1416 1675 174148345 174148610 2.240000e-60 243
7 TraesCS3A01G146500 chr3B 96.703 91 3 0 2161 2251 174149344 174149434 3.880000e-33 152


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G146500 chr3A 128286332 128288586 2254 False 4165.0 4165 100.0000 1 2255 1 chr3A.!!$F1 2254
1 TraesCS3A01G146500 chr3D 122454747 122456921 2174 False 1445.5 2318 91.6740 1 2255 2 chr3D.!!$F1 2254
2 TraesCS3A01G146500 chr3B 174145595 174149434 3839 False 544.4 1415 89.7516 1 2251 5 chr3B.!!$F1 2250

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
599 1818 0.236187 TGTGAACAATTACGGCGTGC 59.764 50.0 24.86 3.62 0.0 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1786 3485 0.031449 GAGGATACGGAGCTGCTGAC 59.969 60.0 7.01 0.0 46.39 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 1.352156 CGACGGCGAAGAAGAAAGGG 61.352 60.000 16.62 0.00 40.82 3.95
242 243 2.299013 TCGGCTTATGACAGACAGTTGT 59.701 45.455 0.00 0.00 0.00 3.32
258 259 0.684535 TTGTCGGATCCTGCTGTTCA 59.315 50.000 10.75 0.00 0.00 3.18
332 339 5.863935 GTGTTCTGATCTTTATTTGGTTGGC 59.136 40.000 0.00 0.00 0.00 4.52
393 1608 5.107220 GGTGAATCGTACCTGTAACTTGTTG 60.107 44.000 0.00 0.00 35.30 3.33
446 1665 4.020543 GAGTAGAGTAGGGGCCATGATAG 58.979 52.174 4.39 0.00 0.00 2.08
452 1671 3.983410 AGTAGGGGCCATGATAGTGAAAT 59.017 43.478 4.39 0.00 0.00 2.17
461 1680 6.165577 GCCATGATAGTGAAATTTTTGGTGT 58.834 36.000 0.00 0.00 0.00 4.16
484 1703 4.698304 TCCATTTCATTTTCCCGTGACTAC 59.302 41.667 0.00 0.00 0.00 2.73
599 1818 0.236187 TGTGAACAATTACGGCGTGC 59.764 50.000 24.86 3.62 0.00 5.34
618 1839 5.561125 GCGTGCATTCATGAAAACAAAATTC 59.439 36.000 13.09 1.17 0.00 2.17
620 1841 7.292292 CGTGCATTCATGAAAACAAAATTCAT 58.708 30.769 13.09 0.00 45.82 2.57
638 1859 7.568199 AATTCATAAGATAACCACGGAAAGG 57.432 36.000 0.00 0.00 0.00 3.11
639 1860 4.448210 TCATAAGATAACCACGGAAAGGC 58.552 43.478 0.00 0.00 0.00 4.35
732 1953 5.232414 GTCTCGAGAAATAATTCCAAGTCGG 59.768 44.000 18.55 0.00 36.12 4.79
737 1958 6.292381 CGAGAAATAATTCCAAGTCGGATGAC 60.292 42.308 0.00 0.00 45.80 3.06
790 2018 3.057876 CGTCTTGATCTTATCCTCTCCCG 60.058 52.174 0.00 0.00 0.00 5.14
876 2105 7.794041 TGCCTCTCAATAAAAATGGCATAAAT 58.206 30.769 0.00 0.00 43.09 1.40
877 2106 8.266473 TGCCTCTCAATAAAAATGGCATAAATT 58.734 29.630 0.00 0.00 43.09 1.82
878 2107 9.762933 GCCTCTCAATAAAAATGGCATAAATTA 57.237 29.630 0.00 1.22 38.79 1.40
894 2123 1.643310 ATTAAAGGCAAGGCAAGGCA 58.357 45.000 5.62 0.00 0.00 4.75
955 2184 2.476619 CAGTTCTACACTTCCAACGCAG 59.523 50.000 0.00 0.00 30.92 5.18
956 2185 2.364324 AGTTCTACACTTCCAACGCAGA 59.636 45.455 0.00 0.00 27.32 4.26
959 2189 3.128349 TCTACACTTCCAACGCAGAAAC 58.872 45.455 0.00 0.00 0.00 2.78
990 2220 3.197333 CCAGGATCATCTACAGCATAGGG 59.803 52.174 0.00 0.00 0.00 3.53
995 2225 1.889170 CATCTACAGCATAGGGAGCGA 59.111 52.381 0.00 0.00 37.01 4.93
1005 2235 0.111446 TAGGGAGCGAGGAGATGGAG 59.889 60.000 0.00 0.00 0.00 3.86
1292 2522 3.266510 TGCCATCCTTTGCTAGTACTG 57.733 47.619 5.39 0.00 0.00 2.74
1293 2523 2.571653 TGCCATCCTTTGCTAGTACTGT 59.428 45.455 5.39 0.00 0.00 3.55
1305 2535 6.764308 TGCTAGTACTGTAGTATTTTCCGT 57.236 37.500 5.39 0.00 32.54 4.69
1413 2645 2.558313 GCAAGAGTTCTGGCGTGC 59.442 61.111 0.00 0.00 32.55 5.34
1418 2650 0.603975 AGAGTTCTGGCGTGCCTTTC 60.604 55.000 12.84 3.00 36.94 2.62
1565 2961 9.730420 TTTTTAGAGAAAAAGCATACACTTGAC 57.270 29.630 0.00 0.00 39.16 3.18
1566 2962 8.677148 TTTAGAGAAAAAGCATACACTTGACT 57.323 30.769 0.00 0.00 0.00 3.41
1567 2963 8.677148 TTAGAGAAAAAGCATACACTTGACTT 57.323 30.769 0.00 0.00 0.00 3.01
1568 2964 6.963796 AGAGAAAAAGCATACACTTGACTTG 58.036 36.000 0.00 0.00 0.00 3.16
1569 2965 6.767902 AGAGAAAAAGCATACACTTGACTTGA 59.232 34.615 0.00 0.00 0.00 3.02
1571 2967 7.365741 AGAAAAAGCATACACTTGACTTGATG 58.634 34.615 0.00 0.00 0.00 3.07
1614 3012 1.275291 CACCCGTACATCCAACAGTCT 59.725 52.381 0.00 0.00 0.00 3.24
1653 3052 7.443272 ACACATTAGTTACCAAGTTTAGACACC 59.557 37.037 0.00 0.00 0.00 4.16
1676 3106 3.846744 GCACATGCAGCAAAAACACAATG 60.847 43.478 0.00 0.00 41.59 2.82
1700 3398 0.319405 GCCCTGCACAAAAGAAGCAT 59.681 50.000 0.00 0.00 37.68 3.79
1701 3399 1.670967 GCCCTGCACAAAAGAAGCATC 60.671 52.381 0.00 0.00 37.68 3.91
1712 3411 4.780275 AAAGAAGCATCCAAGAGAAAGC 57.220 40.909 0.00 0.00 0.00 3.51
1826 3525 1.128188 AGGTCACCCTCCTTGGTCAC 61.128 60.000 0.00 0.00 35.62 3.67
1943 3656 5.832568 AAAATCGAACCAAAATAAACGCC 57.167 34.783 0.00 0.00 0.00 5.68
1944 3657 4.776795 AATCGAACCAAAATAAACGCCT 57.223 36.364 0.00 0.00 0.00 5.52
1945 3658 5.883503 AATCGAACCAAAATAAACGCCTA 57.116 34.783 0.00 0.00 0.00 3.93
1946 3659 5.883503 ATCGAACCAAAATAAACGCCTAA 57.116 34.783 0.00 0.00 0.00 2.69
1947 3660 5.883503 TCGAACCAAAATAAACGCCTAAT 57.116 34.783 0.00 0.00 0.00 1.73
1948 3661 6.256912 TCGAACCAAAATAAACGCCTAATT 57.743 33.333 0.00 0.00 0.00 1.40
1949 3662 6.679843 TCGAACCAAAATAAACGCCTAATTT 58.320 32.000 0.00 0.00 0.00 1.82
1950 3663 7.814642 TCGAACCAAAATAAACGCCTAATTTA 58.185 30.769 0.00 0.00 0.00 1.40
1951 3664 7.750014 TCGAACCAAAATAAACGCCTAATTTAC 59.250 33.333 0.00 0.00 0.00 2.01
1952 3665 7.751793 CGAACCAAAATAAACGCCTAATTTACT 59.248 33.333 0.00 0.00 0.00 2.24
1953 3666 8.975410 AACCAAAATAAACGCCTAATTTACTC 57.025 30.769 0.00 0.00 0.00 2.59
1957 3670 8.895737 CAAAATAAACGCCTAATTTACTCCCTA 58.104 33.333 0.00 0.00 0.00 3.53
1969 3682 6.775594 ATTTACTCCCTAATTTGCCTCAAC 57.224 37.500 0.00 0.00 0.00 3.18
1991 3704 1.853963 AGACCTAGTCAGCAATCGGT 58.146 50.000 0.00 0.00 34.60 4.69
2005 3718 2.163818 ATCGGTGCTCGTTGAAAGAA 57.836 45.000 0.54 0.00 40.32 2.52
2034 3747 2.418628 CCCATGTCACATACGACCAAAC 59.581 50.000 0.00 0.00 34.88 2.93
2067 3780 5.356190 AGAACATGATGGCTAAGTCACATTG 59.644 40.000 0.00 0.00 0.00 2.82
2077 3790 0.247736 AGTCACATTGAGGAGTCCGC 59.752 55.000 5.87 5.87 0.00 5.54
2079 3792 1.811266 CACATTGAGGAGTCCGCCG 60.811 63.158 10.72 1.67 0.00 6.46
2122 3835 4.870636 AGATCAAAATCAGGGCCATTACA 58.129 39.130 6.18 0.00 34.07 2.41
2131 3844 3.199071 TCAGGGCCATTACACTTACGAAT 59.801 43.478 6.18 0.00 0.00 3.34
2136 3849 4.102649 GCCATTACACTTACGAATTTGGC 58.897 43.478 0.00 0.00 40.16 4.52
2137 3850 4.668289 CCATTACACTTACGAATTTGGCC 58.332 43.478 0.00 0.00 0.00 5.36
2145 3858 1.747367 CGAATTTGGCCCACCGCTA 60.747 57.895 0.00 0.00 39.70 4.26
2149 3862 0.965363 ATTTGGCCCACCGCTAACAG 60.965 55.000 0.00 0.00 37.73 3.16
2215 3928 1.267121 ACTCTAGGACGCCACACATT 58.733 50.000 0.00 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
168 169 0.179018 ACTGCCTGGTGTTCAAGTCC 60.179 55.000 0.00 0.00 0.00 3.85
242 243 0.976641 ACTTGAACAGCAGGATCCGA 59.023 50.000 5.98 0.00 0.00 4.55
248 249 0.590195 GTGAGCACTTGAACAGCAGG 59.410 55.000 0.00 0.00 0.00 4.85
277 278 2.375174 ACACTGCCCCTTCAACTATCAA 59.625 45.455 0.00 0.00 0.00 2.57
278 279 1.985159 ACACTGCCCCTTCAACTATCA 59.015 47.619 0.00 0.00 0.00 2.15
332 339 6.205101 ACAATCTACGTAGTCCACTAAAGG 57.795 41.667 21.53 4.55 43.93 3.11
388 1603 4.935352 AAAGCCTAAACATGAGCAACAA 57.065 36.364 0.00 0.00 0.00 2.83
393 1608 5.880054 TCTGTTAAAGCCTAAACATGAGC 57.120 39.130 0.00 0.00 35.21 4.26
446 1665 6.917217 TGAAATGGACACCAAAAATTTCAC 57.083 33.333 10.99 0.00 35.33 3.18
452 1671 5.825151 GGGAAAATGAAATGGACACCAAAAA 59.175 36.000 0.00 0.00 36.95 1.94
461 1680 3.761897 AGTCACGGGAAAATGAAATGGA 58.238 40.909 0.00 0.00 0.00 3.41
484 1703 1.358877 TGTCGGCAGAACATCATTCG 58.641 50.000 0.00 0.00 0.00 3.34
529 1748 7.173907 GTCAGAATTCCAGTTCCATGGTATATG 59.826 40.741 12.58 5.65 41.43 1.78
533 1752 4.288366 TGTCAGAATTCCAGTTCCATGGTA 59.712 41.667 12.58 0.00 41.43 3.25
618 1839 3.247648 CGCCTTTCCGTGGTTATCTTATG 59.752 47.826 0.00 0.00 0.00 1.90
620 1841 2.419021 CCGCCTTTCCGTGGTTATCTTA 60.419 50.000 0.00 0.00 0.00 2.10
629 1850 1.004200 AACCTACCGCCTTTCCGTG 60.004 57.895 0.00 0.00 0.00 4.94
745 1966 4.624336 AGTCGGATATGATCTATCACGC 57.376 45.455 11.73 9.43 40.03 5.34
834 2062 1.064654 GGCAGAGATGGCGATGTTTTC 59.935 52.381 0.00 0.00 0.00 2.29
876 2105 1.344114 CTTGCCTTGCCTTGCCTTTAA 59.656 47.619 0.00 0.00 0.00 1.52
877 2106 0.968405 CTTGCCTTGCCTTGCCTTTA 59.032 50.000 0.00 0.00 0.00 1.85
878 2107 1.750297 CTTGCCTTGCCTTGCCTTT 59.250 52.632 0.00 0.00 0.00 3.11
879 2108 2.212110 CCTTGCCTTGCCTTGCCTT 61.212 57.895 0.00 0.00 0.00 4.35
880 2109 2.602568 CCTTGCCTTGCCTTGCCT 60.603 61.111 0.00 0.00 0.00 4.75
881 2110 4.383861 GCCTTGCCTTGCCTTGCC 62.384 66.667 0.00 0.00 0.00 4.52
882 2111 3.167822 TTGCCTTGCCTTGCCTTGC 62.168 57.895 0.00 0.00 0.00 4.01
883 2112 1.005394 CTTGCCTTGCCTTGCCTTG 60.005 57.895 0.00 0.00 0.00 3.61
884 2113 2.875804 GCTTGCCTTGCCTTGCCTT 61.876 57.895 0.00 0.00 0.00 4.35
885 2114 3.308705 GCTTGCCTTGCCTTGCCT 61.309 61.111 0.00 0.00 0.00 4.75
894 2123 1.002868 AGTGCGATCTGCTTGCCTT 60.003 52.632 10.16 0.00 46.63 4.35
973 2203 2.495270 CGCTCCCTATGCTGTAGATGAT 59.505 50.000 0.00 0.00 0.00 2.45
990 2220 2.206536 CCCCTCCATCTCCTCGCTC 61.207 68.421 0.00 0.00 0.00 5.03
995 2225 1.074623 CTGCTCCCCTCCATCTCCT 60.075 63.158 0.00 0.00 0.00 3.69
1274 2504 5.599999 ACTACAGTACTAGCAAAGGATGG 57.400 43.478 0.00 0.00 0.00 3.51
1305 2535 4.808895 CGCTGCAAACTTACATATACCAGA 59.191 41.667 0.00 0.00 0.00 3.86
1413 2645 4.114794 CAAGTTCAAAGCAACCAGAAAGG 58.885 43.478 0.00 0.00 45.67 3.11
1418 2650 4.572985 TGATCAAGTTCAAAGCAACCAG 57.427 40.909 0.00 0.00 0.00 4.00
1552 2948 5.798132 TCTTCATCAAGTCAAGTGTATGCT 58.202 37.500 0.00 0.00 0.00 3.79
1565 2961 5.954296 ACATGTTGACCTTCTTCATCAAG 57.046 39.130 0.00 0.00 33.16 3.02
1566 2962 6.768483 TCTACATGTTGACCTTCTTCATCAA 58.232 36.000 2.30 0.00 30.80 2.57
1567 2963 6.358974 TCTACATGTTGACCTTCTTCATCA 57.641 37.500 2.30 0.00 31.40 3.07
1568 2964 7.856145 ATTCTACATGTTGACCTTCTTCATC 57.144 36.000 9.60 0.00 0.00 2.92
1569 2965 7.884877 TGAATTCTACATGTTGACCTTCTTCAT 59.115 33.333 21.41 7.00 0.00 2.57
1571 2967 7.361286 GGTGAATTCTACATGTTGACCTTCTTC 60.361 40.741 21.41 16.68 0.00 2.87
1614 3012 2.642154 AATGTGTGGTCCGGTGTTAA 57.358 45.000 0.00 0.00 0.00 2.01
1653 3052 0.230260 GTGTTTTTGCTGCATGTGCG 59.770 50.000 1.84 0.00 45.83 5.34
1676 3106 1.538047 TCTTTTGTGCAGGGCATCTC 58.462 50.000 0.00 0.00 41.91 2.75
1700 3398 5.104900 GGTCTAGTTATGGCTTTCTCTTGGA 60.105 44.000 0.00 0.00 0.00 3.53
1701 3399 5.119694 GGTCTAGTTATGGCTTTCTCTTGG 58.880 45.833 0.00 0.00 0.00 3.61
1783 3482 0.249238 GATACGGAGCTGCTGACCTG 60.249 60.000 7.01 0.00 0.00 4.00
1786 3485 0.031449 GAGGATACGGAGCTGCTGAC 59.969 60.000 7.01 0.00 46.39 3.51
1826 3525 6.748333 TCTTTCTACAGCAATGGAAATCAG 57.252 37.500 0.31 0.00 29.84 2.90
1855 3563 9.567848 TTTACTGTCTGTTCAAAACTTCAAATC 57.432 29.630 0.00 0.00 0.00 2.17
1859 3567 7.361713 CCAGTTTACTGTCTGTTCAAAACTTCA 60.362 37.037 8.91 0.00 42.27 3.02
1860 3568 6.967199 CCAGTTTACTGTCTGTTCAAAACTTC 59.033 38.462 8.91 0.00 42.27 3.01
1861 3569 6.433093 ACCAGTTTACTGTCTGTTCAAAACTT 59.567 34.615 8.91 0.00 42.27 2.66
1862 3570 5.944007 ACCAGTTTACTGTCTGTTCAAAACT 59.056 36.000 8.91 4.34 42.27 2.66
1863 3571 6.190954 ACCAGTTTACTGTCTGTTCAAAAC 57.809 37.500 8.91 0.00 42.27 2.43
1864 3572 6.827586 AACCAGTTTACTGTCTGTTCAAAA 57.172 33.333 8.91 0.00 42.27 2.44
1865 3573 6.127842 GGAAACCAGTTTACTGTCTGTTCAAA 60.128 38.462 8.91 0.00 42.27 2.69
1866 3574 5.355910 GGAAACCAGTTTACTGTCTGTTCAA 59.644 40.000 8.91 0.00 42.27 2.69
1884 3592 4.383880 GGGTCTTATGGACTACTGGAAACC 60.384 50.000 0.00 0.00 43.97 3.27
1890 3598 4.819105 TGTTGGGTCTTATGGACTACTG 57.181 45.455 0.00 0.00 43.97 2.74
1891 3599 4.783227 ACATGTTGGGTCTTATGGACTACT 59.217 41.667 0.00 0.00 43.97 2.57
1941 3654 5.833667 AGGCAAATTAGGGAGTAAATTAGGC 59.166 40.000 0.00 0.00 0.00 3.93
1942 3655 7.060421 TGAGGCAAATTAGGGAGTAAATTAGG 58.940 38.462 0.00 0.00 0.00 2.69
1943 3656 8.406297 GTTGAGGCAAATTAGGGAGTAAATTAG 58.594 37.037 0.00 0.00 0.00 1.73
1944 3657 7.891183 TGTTGAGGCAAATTAGGGAGTAAATTA 59.109 33.333 0.00 0.00 0.00 1.40
1945 3658 6.723977 TGTTGAGGCAAATTAGGGAGTAAATT 59.276 34.615 0.00 0.00 0.00 1.82
1946 3659 6.252995 TGTTGAGGCAAATTAGGGAGTAAAT 58.747 36.000 0.00 0.00 0.00 1.40
1947 3660 5.636123 TGTTGAGGCAAATTAGGGAGTAAA 58.364 37.500 0.00 0.00 0.00 2.01
1948 3661 5.249780 TGTTGAGGCAAATTAGGGAGTAA 57.750 39.130 0.00 0.00 0.00 2.24
1949 3662 4.919774 TGTTGAGGCAAATTAGGGAGTA 57.080 40.909 0.00 0.00 0.00 2.59
1950 3663 3.806949 TGTTGAGGCAAATTAGGGAGT 57.193 42.857 0.00 0.00 0.00 3.85
1951 3664 4.766891 TCTTTGTTGAGGCAAATTAGGGAG 59.233 41.667 0.00 0.00 37.66 4.30
1952 3665 4.522789 GTCTTTGTTGAGGCAAATTAGGGA 59.477 41.667 0.00 0.00 37.66 4.20
1953 3666 4.321974 GGTCTTTGTTGAGGCAAATTAGGG 60.322 45.833 0.00 0.00 37.66 3.53
1957 3670 5.140454 ACTAGGTCTTTGTTGAGGCAAATT 58.860 37.500 0.00 0.00 37.66 1.82
1969 3682 2.932614 CCGATTGCTGACTAGGTCTTTG 59.067 50.000 0.00 0.00 33.15 2.77
1991 3704 1.593196 CCCACTTCTTTCAACGAGCA 58.407 50.000 0.00 0.00 0.00 4.26
1996 3709 1.248486 GGGAGCCCACTTCTTTCAAC 58.752 55.000 0.00 0.00 35.81 3.18
2034 3747 1.135603 CCATCATGTTCTGGTGTTGCG 60.136 52.381 0.00 0.00 33.83 4.85
2077 3790 0.950836 TGTTTTGTGTGATGCTCCGG 59.049 50.000 0.00 0.00 0.00 5.14
2079 3792 3.435105 TTGTGTTTTGTGTGATGCTCC 57.565 42.857 0.00 0.00 0.00 4.70
2122 3835 1.541379 GGTGGGCCAAATTCGTAAGT 58.459 50.000 8.40 0.00 34.57 2.24
2131 3844 1.602323 CTGTTAGCGGTGGGCCAAA 60.602 57.895 8.40 0.00 45.17 3.28
2136 3849 1.153823 CTCGTCTGTTAGCGGTGGG 60.154 63.158 0.00 0.00 0.00 4.61
2137 3850 1.805945 GCTCGTCTGTTAGCGGTGG 60.806 63.158 0.00 0.00 0.00 4.61
2145 3858 3.045601 AGCTATTTGTGCTCGTCTGTT 57.954 42.857 0.00 0.00 35.67 3.16
2149 3862 1.202076 GGCAAGCTATTTGTGCTCGTC 60.202 52.381 7.24 0.00 40.22 4.20
2215 3928 5.510861 GGTTCTGCTACTACCAAGTTCAGAA 60.511 44.000 13.88 13.88 43.78 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.