>input_sequence_85824
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---------------------------------------------------------------------ATGGAGGGGAG
CAGCAGCCGGACGCCGGAGATAACCATCGTCCCGGCGCCTAGGCCGGCGGCGGGCGGTGGCGGTGGCGGTGGCGCCGTCG
AGGCGGTGAAGGCGGCGAGCAAGGAGCCCATCAGCCCGGGCTCGCCTTCCCCGGCCAGCAGGGAGCGCCCCGGCGCCGTC
TCCCTGCCCGGGTGGAAGCTCGACTCCCTCTGCAAGGAGTCCAGCTCGCCGCCGGCCATGATGGCGCGCTTCCCCTATTT
CTGA----------------------------------------------------------------------------
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>chr3A_1_TraesCS3A01G146500
CTACAATCTCACGCTCCACTCCGACTCCAAAACGACGGCGAAGAAGAAAGGGGAGGGCGATCCGATCGCGTTGGACGACA
TCGACATGACCTCGCCGTGGGTGGAGGATTCGGACGGTCCGAGCTTGACCCAGTGGCTCGACAGGTTCCCGTCGGCCCTG
GATGGTGGGGACTTGAACACCAGGCAGTTTGGTGGATCCATCTTTGGCACCAACGATCTTTTCGGCTTATGACAGACAGT
TGTCGGATCCTGCTGTTCAAGTGCTCACTGTATTTTTTTGATAGTTGAAGGGGCAGTGTTCGCTGCAT------GTGTTC
TGATCTTTATTTGGTTGGCCTTTAG-------------------------------------------------------
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---------------------------------TGGACTACGTAGATTGTAGATTCATGTCAAGGTGAATCGTACCTGTA
ACTTGTTGCTCATGTTTAGGCTTTAA----CAGAAGAAACTGGAGTAGAGTAGGGGCCATGATAGTGAAATTTTTGGTGT
CCATTTCATTTTCCCGTGACTACGAATGATGTTCTGCCGACAATTCTGTGAAACCTGAGAATCAGAGCATATACCATGGA
ACTGGAATTCTGACAAAAATATCATAGGGAAGATATTTTGTGAACAATTACGGCGTGCAT--TCATGAAAACAAAATTCA
TAAGATAACCACGGAAAGGCGGTAGGTTGAACCAACCACGCAGGTGAGGCCACTGGTCTTTGTCGACGTGCACTATCCGC
TCATCAATGTCTCGAGAAATAATTCCAAGTCGGATGACGACGATGGCGTGATAGATCATATCCGAC-------TACGTCT
TGATCTTATCCTCTCCCGACAATAAAGAAGACAACTAAATCAGTTGTTTGTTAGAGAAAAAGAAAA-CATCGCCATCTCT
GCCTCTCAATAAAAATGGCATAAATTAAAGGCAAGGCAAGGCAAGGCAAGCAGATCGCACTGAAGGCAGTAGTGCAGCAG
ACCAGTTCTACACTTCCAACGCAGA-AACAAAATCCTCCAGGATCATCTACAGCATAGGGAGCGAGGAGATGGAGGGGAG
CAGCAGCCGGACGCCGGAGATAACCATCGTCCCGGCGCCTAGGCCGGCGGCGGGCGGTGGCGGTGGCGGTGGCGCCGTCG
AGGCGGTGAAGGCGGCGAGCAAGGAGCCCATCAGCCCGGGCTCGCCTTCCCCGGCCAGCAGGGAGCGCCCCGGCGCCGTC
TCCCTGCCCGGGTGGAAGCTCGACTCCCTCTGCAAGGAGTCCAGCTCGCCGCCGGCCATGATGGCGCGCTTCCCCTATTT
CTGAAGCCACGCGGGCATCTTTGCCATCCTTTGCTAGTACTGTAGTATTTTCCGTCTGGTATATG--TAAGTTTGCAGCG
GCAGTTTTGTTGCTCGTTCCTTCCGGCGATGTCATGTAGAACTCGTATCGTGGTTGTAATCGTTCTCGCAAGAGTTCTGG
CGTGCCTTTCTGGTTGCT--------------------------------------------------------------
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-----------------TTGAACTTGATCATGCACGTGTATATTTTGGTCTCGGAGTTTGTGTATGATCATGTGAACTTT
AATCCTCCAAATAATGTATAGATATAA--CAATAAAAACGTGAATACTGT---TTTTTTAGAGAAAAAGCATACACTTGA
CTTGATG--AAGAAGGTCAACATGTAGAATTCACCCGTACATCCAACAGTCTTAACACCGGACCACACATTAGTTACCAA
GTTTA-GACACCGCA-------CATGCAGCAAAAACA------------------------CAATGAGATGCCC------
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----------------------TGCACAAAAGAAGCATC-CAAGAGAAAGCCATAACTAGACCCTAGGTCGGAGAAGCTA
GATCCTGCTGAGAAAGAGAGAACGCCATGGCACGAACGCGCCAGGTCAGCAGCTCCGTATCCTCTAGGTCACCCTCCTTG
GTCAC---------TGATTTCCATTGCTGTAGAAAGAATAATGATTTGAAGTTTTGAACAGACAGTAAACTGGTTTCCAG
TAGTCCATAAGACCCAACATGTAG-----TAAAAAAATCGAACCAAAATAAACGCCTAATTTACTCCCTAATTTGCCTCA
ACAAAGACCTAGTCAGCAATCGGTGCTCGTTGAAAGAAGTGGGCTCCCATGTCACATACGACCAAACGCAACACCAGAAC
ATGATGGCTAAGTCACATTGAGGAGTCCGCCGGAGCATCACACAAAACACAAAGATCAAAATCAGGGCCATTACACTTAC
GAATTTGGCCCACCGCTAACAGACGAGCACAAATAGCTTGCCACATGAAGGTTTTAATTTTGAGAGGAACTCTAGGACGC
CACACATTTCTGAACTTGGTAGTAGCAGAACCCTCTATCAATCTGGA
>chr3D_1
CTACAATCTCACGCTCCACTCCGACTCCAAAACGACGGCGAAGAAGAAAGCAGAGGGCGATCCGATCGCGTTGGACGACA
TCGACATGACCTCGCCGTGGGTGGAGGATTCGGACGGTCCGAGCCTGACCCAGTGGCTCGACAGGTTCCCGTCGGCCTTG
GATGGTGGAGACTTGAACACCAGGCAGTTTGGTGGATCCATCTTTGGCACCAACGATCTTTTCGGCTTATGACAGACAGT
ATGCGGATTCTGTTGT------GCTCACTGTATTTTTG-GATAGTTGAAGGGGCAGTGTTCGCTGCATCTGCATGTTTTC
TGATCTTTATTTGGTTGGTCTTTAG-------------------------------------------------------
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---------------------------------TGGACTACATAGACTGTAGATTCATGTCAAGGTGAATCGTACC----
----------------------------------AGAAACTGGAGTAGAGTAGGGGCCATGATAATGAAAATTTTGGTGG
CCATTTCATTTTCCCGTGACTATGAATGATGTTCTGCCGACAATTCTGTGAAACCTGAGAATCAGAGTATAGACCATGGA
ACTGGAATTATTACAAAAATGTCATAGGTTAGATATTTTGTGAACAATTACGGCGTGTAT--TCACGAAAACAAAATTTA
CAAGATAACTACGGAAAGCTGGTAGGTTAAACCAACCACGCAGGTGAGGCCACTGGTCTTTGTCGACGTGCACTATCCGC
TCATCAGTGTCTTGAGAAATAATTCCAAGTCGAATGATGACGATGCCGTGGTAGACCTTATCCGAC-------TACGTCT
TGATCTTATCCTCTCCCAACAATAAAGAAGACAACTAAATCAGTTGTTTGTTATAGAAAAAAAAAACCATCGCCATCTCT
GCCTCTCAATAAAAATGGCATAAA----------GGCAAGGCGAGGCAAGCAGATCGCACTGAAGGCAGTAGTGCAGCAG
ACCAGTTCTACACTTCCAACGCACGCAAGAAAATCCTCCAGGTTCATCTACAGCATAGGAAGCGGGGAGATGGAAGGGAG
CAGCAGCCGGACGCCAGAGATAACCATCGTCCCGGCGCCTAGGCCGGCGGCGGGCGGTGGCGGTGGCGGTGGCGCCGTGG
ACGCGGTGAAGGCGGCGAGCAAGGAGCCCATCAGCCCGGGCTCGCCTTCCCCGGCCAGCAAGGTGCGCCCCGGCGCCGTC
TCCCTGCCCGGGTGGAAGCTCGACTCCCTCTGCAAGGAGTCCAGCTCGCCGCCGGCCATGATGGCGCGCTTCCCCTATTT
CTGAAGCCACGCGGGCATCCTTGTCATCCTTTGCTAGTACT--AGTATTTTCTGGCTGGTATATGTATAAGTTTGCAGCG
GCAGTTTTGCTGCTCGTTCCTTCCGGCGATGTCATGTAGAACTCGTATCGTGGTTGTAATCGTTCTCGCAAGAGTTCTGG
CGTGTCTTTGTGGTTGCT--------------------------------------------------------------
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-----------------TTGAACTTAATCATGCACGTGTATGTTTTGGTTTCGGAGTTTGTGTATGATCTTGTGAACTTT
AATCCTCCAAATAATGTATAGATGACAAT--ATAAAAACGCGCAATACTGTTCTTTTTTAGAGAAAAGGCATACACTTAT
AACTTTATAAAGAAGGTCAACATGTGGAATTCACCCGTACATCCAACAGTC-TAACACCGGACCACACATTAGTTACCAA
GTTTA-GATACTGCACATGCAGCATGCAGTAAAAACA------------------------CAATAAGATGCCCAC----
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------------------------------------------------------AACTGGACCCTAGGTCGGAGAAGCTA
GATCCTGCTGAGAAAGAGAGAACGCCATGGCACGAACGAGCGAGATCAGCAGCTCAGTTTCCTCTAGGTCACCCTC-TTG
GTCAA---------TGATTTCCACTGCAGTAGAAAGAATAATAATT--------TGAACAGAGAGTAAACTTGTTTCTGG
TAGTCCATAAAACCCAACACGTTGCAAAATAAAAAAATCGAACCAAAATAAACA------------CCTGATTTGCCTCA
ATAAAGACCTA-TCAGCAACCGGAGCTCATTGAAAGAGGTGGGCTCCCATGTCACATACGACCAAAT-CAACACGAGAAC
ATGATGGCTAAGTCACATTTAGAAATGCGTCCGAGCATCACACAAAACACAAAGATCAAAATCAAGGCCATTACGCTTAC
GAACTTGGT-CACCGCTGACAAACGAGCACAAATAGATTGCGACATGAAGGTTTTAATTTTGAGAGGAACTCTAGGACGC
GACACATCTATGAACTTGGTAGTAGGAGAACCCTCTATCAATCTGGA
>chr3B_1
CTACAATCTCACGCTCCACTCCGACTCCAAAACGACGGCGAAGAAGAAAGGAGAGGGGGATCCGATCGCGCTGGACGATA
TCGACATGACCTCACCATGGGTGGAGGATTCGGACGGTCCGAGCCTGACCCAGTGGCTCGACAGGTTCCCGTCGGCCCTG
GATGGTGGAGACTTGAACACCAGACAGTTTGGTGGATCCATCTTTGGCACCAACGATCTTTTCGGCTTATGACAGACAGT
TGGCGGATTCTGCTGTTCGAGTGCTCACTGTGTT------------GAAGGGGCGGTGTTCGCTGCAT------GTGTTC
TGATCTTTATTTGGTTGGTCTTTAGGGTGTGTTTGGTTCAGGAAATGAAGTGGAATGTAACGGGTTGGACCTGCACCTGG
GAGCGATTCCTGTGTTTAGTTGAAAAAGGGAACAGAACGCACTGCTTCCCTAGAGAGGAATATTCCCCCTGTATGCCGAA
CCGGGTGGTTCCTCCAAATTGGCCGGACCACGCGGAACGCGTCTCTCTCGCGTCGTCCCCCACTCACCAACGAGGAAGGC
GTCCTGCGCGGCGCCCCGCTCCCTCTCCCTCTCCCTCTCCCTCGATGGGCATGGCGGCGGCCATACACCTCCCCCTCCTC
TACGGCACCCCCTCGCCGCGATTGGATATGCAGCCTTGCCGGCGTCTCCTTCCCCTCGTCGGAGATGCAACTTCACCGCG
TCTCCTGCCCCTCGACCAAGGATCTGGGAAAGGACGGGGCGGCTCCCTCTCAGATCCGGCCTCTCCCTCGGCTCGCCCTC
TGGAACGACGGCTCCTCCCCCGTCTCTCTCTCGTCAAGCAGCAGCAGATTGCTCCCTCCTCCCGTTCCTCTCACCCAGCA
GCAACGATGGCAGGTTAGATGCAGCCGATTTGTTGGGAAGCAGAGCAGATAAGCGGCGGTCGGCTCGGCTCGTCTCCTTC
CCGGCAGCTAGCCGGCCGGTGGCATCCACACACCTTGGCGGTAGCAGCACCAACCAGGGAGCAGCCAGTTCGGCAAGCAG
CAAGAGAATCATCAGCGGCGGCAAGAGCAAGCTTCTTCGATTGGCTCTTTCTAACTTGGCATTCTCCATCCAATAATTAG
TAGTACTCAACTTGATTAATGCTAGCTTTGTGTGCTCTGTGTTGAGACCGGTAGTAACAATTTTTGTTGTCATTAATACT
TTGTGATCTAGATTTTGTGCTTCATCAACATTTGTTATTTATTTTCTGAAAAGTTGTTGTGACTACCATTTTTTGTATAT
AAACAATCAAATATCAGGTTATATATTTCAGTGATAAATCATTGCGAAATTCAAATGTTGTTCAAAACTATTTATGCTTG
CGAGTGGAGTTATAAATTATTGTGAGCGGAACCAAATTCACTCAATTCAATCTCTCCAACCAAACACCGAAATGTAACCA
TTTCATTCCATCTATTGTGCTCAAGCAAACATAGAGACGGAACCGACCCATTCTAGTGAAATGGAACCATGACATTCCAT
TCCACTTCGTTCCGCAACCAAACACACCCTTAGTGGACTACGTAGATTGTAGATTCATGTCAAGGTGAATCGTACCTGTA
ACCTGTTACTCATGTTTAGGCTTTAATTAGCAGAAGAAACTGGAGTAGAGTAGGGGCCATGATAATGAAAACTTTGATGG
CCATTTCATTTTCCCTTGAGTATGAATGATGTTCTGCCGACAATTCTGTGAAGCTTGAGAATCAGAGTATAGACCATGGA
ACTGGAATTCTGACAAAAATATCACAGGGAAGATATTTTGTGAACAATTACGGCGTGTATATTCATGAAAACTAAATTTA
CAAGGTAACTAGGGAAAGA-GGTAGGTTGAGCCAACCACGTAGGTGAGGCCACTGGTCTTTGTCGACGTGCACTGTCCGC
TCATCAATGTCTCGAGAAACAATTCCAAGTCGACTGATGACGATGTCGTGATCGGTCTTATCCGACTACGTCTTACGTCT
TGATCTTATCCTCTCCCAACAATAAAGAAGACAACTAAATCAGTTGTTTGTTAGGAAAAAAAAAAAC-ATCGCCATCTCC
GCCTCTCAATAAAAATGGCATAAA----------GGCA-----AGGCAAGCAGACTGCACTGAAGGCAGTAGTGCAGCAC
ACCAGTTCGACACTTCCAACGCACGCAAGAAAATCCTCCAGGTTCATCCACAGCATAGGAAGCGGGGAGATGGAAGGGAG
CAGCAGCCGGACGCCGGAGATAACCATCGTCCCGGCGCCTAGGCCGGCGGCGGC------CGGTGGCGGTGGCGCCGTCG
AGGCGGTGAAGGCGGCGAGCAAGGAGCCCATCAGCCCGGGCTCGCCTTCCCCGGCCAGCAAGGAGCGCCCCGGCGCCGTC
TCCCTGCCCGGGTGGAAGCTCGACTCCCTCTGCAAGGAGTCCAGCTCGCCGACGGCCATGATGGCGCGCTTCCCCTATTT
CTGAAGCCACGC--GCGTCTTTGTCATCCTTTGCTAGTA--------TTTCCCGGCTGGTATATG--TAAGTTTGCAGCG
GCAGTTTTGCTGCTCATTCCTTCCGGCGATGTCGTGTAGAACTCGTATCGTGATTGT-ATCGTTCTCGCAAGAGTTCTGG
GGTGTCTTTGTGGTTGCTTTGAACTTCCTTTTTAAACATCACTACAAAGGTAAGCGCTCATACATCATGCCTTATGAGCA
CCTTCGAGAGACTGAGCCGACATGTCATTTTAAAATTTACGAAGTCATCGTCATTGTCCCTCTAACCATCCAATCACAGG
TTGGTTTACTGGTGGCTTTGAACTTGGTCATGCATGTGTATATTTTGTTCTTGAAGTTTGTGTATGATCATGTGAACTTT
AATACTCCAAATAATATATACGTAGATGGCAATAAAAACGCGCAATACTTTTCGTTTG-AGAGAAAAGGTATGCACTTGA
TGACTTTATA--AAGGTTAACATGTAGAATTCATCCGTACATCCAACAGCC-TAACACCGGACCATACATGGGTTAACAG
GTTTTGGACACTCCA-------CATGCAGCAAAAACAGCAAAAACACAGTAAGAGTAAGTACAATAAGATGACATAAGTA
GGCTATAAGAATTAGAATATTATATTGTTGCTTAGTTGAAGGAGAGAGAGGAGAAGCTGGCTCTTGGTTAGTAGTCGGCT
GCAACACGACACCCAAGACGCTTTTTGAGGTTGTAAGGTGGGCCAACTTCTAATAAAATAGTACACATCTAAAATTTACT
ATTCTAAATGCCGACTATGTGTTGGCTCTAGATGACATAACAACTTTTTATAGCCGACCATTGCTTGTATTATTAACCAT
GCTCTAAGATGCTCACTAACTATGCACAAAAGAAGCAATTCAAGAGAAAGTCATAACTAGACCCTAGGCCGGAGAAACTA
GATCCTGCTGAGAAAGAGAGAACGCCATGGCACGAACGTGCGAGATCAGCAGCTCCGTATCCTCTAGGTCACTCTCCTTG
GTCAATGATTCGATTGATTTCCATTGTTGTAGAAAGAATATTAGTT--------TGAACAAACAGTAAACTTGTTTATGG
TAGTCCATAAGACCCAACATGTAG-----CAAAAAAA--GAACCAAAATAAACA------------CCTGATCTGCCTCG
ATAAAGACCTAGTCAGCAATCGGAGTTCATTGGAAGAGGTGGGCTCCCATGTTACATACGACAAAATGCAACACCAGAAC
ATGATGGCTAAGTCACATTTAGGAGTCCGTCAGAGCATCACACAATACACAAAGATCAAAATCAGGGCCAATGCGCTTAT
G-------------------------------ATAGCTTGACACATGAAGGTTTTAATTTTGAGAGCAACTCTAGGACGC
CACACATCTCTGAACTTGGTAGTAGCAGAACCCTCTATCAATC----
>SNPs
---------------------------------------------------S----------------------------
--------------------------------------------S-----------------------------------
--------S-----------------------------------------------------------------------
--S-----S---------S------------------SS-----------------------------------------
------------------S-------------------------------------------------------------
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--S----S--------------------------------------------------------S-----S--------S
----------------------S--------------------------------------------S---S--------
---------------------------------------------------------S--------------------S-
S--------S--------SS------------------------------------------------------------
--------------------------------S----S-------S-----------S----------------------
-----------------S-------------------------------------------S------------------
------------------------SSSSSSSSSS--------S-------------------------------------
-----------------------SS---S-------------S----------------S----S---------S-----
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-----------------------S-----------------SS-----------S-------------------------
---------S----------------------------------------------------------------------
----S----S----------------------------------------------------------------------
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------------------------S---------------S-S-SSSSS------------------S------------
SSSSS-S--------------------------------------------S----------------------------
-----------S-----------------------------------------------------S--------------
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-------------------------------------SS-----------S-----------------------------
--------------------------------------S--S--S-----------------------------------
----S-------------------------------------S---SSSSSSSS-----------------S-----SS-
-----------------------------------------------------SSSSSSSSSSSSS---S----------
-S---------------------S----S--------S----------------------------S-------------
-------------------S---------S-S------------------------------------------S-----
---S----SS-------S---S----------------------------------------------------------
-------S---------------------------------------
>forward_1818
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--------------------------------------TGTGAACAATTACGGCGTGC----------------------
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>reverse_3485
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--------------------------------------------GTCAGCAGCTCCGTATCCTC----------------
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