Multiple sequence alignment - TraesCS3A01G145500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G145500 chr3A 100.000 2532 0 0 1 2532 127963472 127960941 0.000000e+00 4676
1 TraesCS3A01G145500 chr3D 88.306 1086 98 11 1455 2532 121528699 121527635 0.000000e+00 1275
2 TraesCS3A01G145500 chr3D 90.891 494 32 6 978 1463 121530090 121529602 0.000000e+00 651
3 TraesCS3A01G145500 chr3D 84.772 197 14 4 2 198 121532816 121532636 1.550000e-42 183
4 TraesCS3A01G145500 chr3D 85.484 124 15 3 861 981 121532542 121532419 2.640000e-25 126
5 TraesCS3A01G145500 chr2A 94.431 413 19 4 196 605 765449312 765449723 1.280000e-177 632
6 TraesCS3A01G145500 chr2A 96.875 160 5 0 689 848 126879715 126879874 4.150000e-68 268
7 TraesCS3A01G145500 chr2A 95.238 168 7 1 689 856 776052437 776052271 5.370000e-67 265
8 TraesCS3A01G145500 chr2A 95.679 162 7 0 689 850 24661809 24661648 6.950000e-66 261
9 TraesCS3A01G145500 chr6A 94.161 411 22 2 197 605 578665394 578665804 2.140000e-175 625
10 TraesCS3A01G145500 chr6A 91.847 417 28 6 197 607 30376887 30376471 6.070000e-161 577
11 TraesCS3A01G145500 chr6A 96.319 163 6 0 689 851 146491994 146491832 4.150000e-68 268
12 TraesCS3A01G145500 chrUn 93.947 413 21 4 196 605 308629699 308630110 2.770000e-174 621
13 TraesCS3A01G145500 chrUn 91.908 173 10 4 678 849 451796849 451797018 3.260000e-59 239
14 TraesCS3A01G145500 chr4A 93.447 412 22 5 197 605 45412362 45411953 7.750000e-170 606
15 TraesCS3A01G145500 chr4A 95.625 160 7 0 689 848 632698295 632698454 8.990000e-65 257
16 TraesCS3A01G145500 chr4A 94.479 163 9 0 689 851 405861321 405861159 4.180000e-63 252
17 TraesCS3A01G145500 chr5A 92.494 413 27 4 197 605 564386223 564386635 2.810000e-164 588
18 TraesCS3A01G145500 chr5A 94.410 161 9 0 687 847 529658316 529658476 5.410000e-62 248
19 TraesCS3A01G145500 chr1D 92.252 413 27 4 197 605 375946040 375946451 4.700000e-162 580
20 TraesCS3A01G145500 chr1A 92.086 417 24 9 197 610 133174052 133174462 1.690000e-161 579
21 TraesCS3A01G145500 chr1A 96.894 161 5 0 689 849 564629396 564629236 1.150000e-68 270
22 TraesCS3A01G145500 chr7A 92.029 414 26 6 197 605 276144532 276144943 2.180000e-160 575
23 TraesCS3A01G145500 chr3B 91.525 295 17 3 944 1238 173097380 173097094 1.410000e-107 399
24 TraesCS3A01G145500 chr3B 84.810 237 24 4 1235 1466 173072575 173072346 7.050000e-56 228
25 TraesCS3A01G145500 chr3B 83.920 199 16 6 1 198 173097630 173097447 2.590000e-40 176


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G145500 chr3A 127960941 127963472 2531 True 4676.00 4676 100.00000 1 2532 1 chr3A.!!$R1 2531
1 TraesCS3A01G145500 chr3D 121527635 121532816 5181 True 558.75 1275 87.36325 2 2532 4 chr3D.!!$R1 2530
2 TraesCS3A01G145500 chr3B 173097094 173097630 536 True 287.50 399 87.72250 1 1238 2 chr3B.!!$R2 1237

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
194 195 0.035152 TGCATCTTCCACAGCGGATT 60.035 50.0 0.0 0.0 45.80 3.01 F
747 759 0.037590 TGAGGGTGTTGCCGCTAAAT 59.962 50.0 0.0 0.0 38.44 1.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1060 3416 0.03601 AAGACTTGCCCACAGGATCG 60.036 55.0 0.00 0.00 33.47 3.69 R
1718 5000 0.03831 CCTTGGGTGAACTTCCTCCC 59.962 60.0 10.54 10.54 40.26 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 0.603569 AGTGTGGACGATGGACAGAC 59.396 55.000 0.00 0.00 0.00 3.51
63 64 5.887598 AGACAACCAGCAGCAAATGATTATA 59.112 36.000 0.00 0.00 0.00 0.98
64 65 6.548622 AGACAACCAGCAGCAAATGATTATAT 59.451 34.615 0.00 0.00 0.00 0.86
66 67 7.651808 ACAACCAGCAGCAAATGATTATATAC 58.348 34.615 0.00 0.00 0.00 1.47
67 68 6.486253 ACCAGCAGCAAATGATTATATACG 57.514 37.500 0.00 0.00 0.00 3.06
70 71 6.591448 CCAGCAGCAAATGATTATATACGAGA 59.409 38.462 0.00 0.00 0.00 4.04
100 101 6.806751 TGAGGAGAGGTAAATTGTCTTATCG 58.193 40.000 0.00 0.00 0.00 2.92
125 126 4.048504 CACATCTGGTCACGCGAATAATA 58.951 43.478 15.93 0.00 0.00 0.98
127 128 4.745125 ACATCTGGTCACGCGAATAATAAG 59.255 41.667 15.93 1.10 0.00 1.73
128 129 4.380841 TCTGGTCACGCGAATAATAAGT 57.619 40.909 15.93 0.00 0.00 2.24
129 130 4.357142 TCTGGTCACGCGAATAATAAGTC 58.643 43.478 15.93 0.00 0.00 3.01
130 131 3.110358 TGGTCACGCGAATAATAAGTCG 58.890 45.455 15.93 0.00 45.57 4.18
131 132 2.470257 GGTCACGCGAATAATAAGTCGG 59.530 50.000 15.93 0.00 43.14 4.79
134 135 0.433492 CGCGAATAATAAGTCGGGCG 59.567 55.000 0.00 0.00 46.46 6.13
135 136 1.774639 GCGAATAATAAGTCGGGCGA 58.225 50.000 0.00 0.00 43.14 5.54
136 137 2.129607 GCGAATAATAAGTCGGGCGAA 58.870 47.619 0.00 0.00 43.14 4.70
138 139 3.185797 GCGAATAATAAGTCGGGCGAAAT 59.814 43.478 0.00 0.00 43.14 2.17
139 140 4.698276 CGAATAATAAGTCGGGCGAAATG 58.302 43.478 0.00 0.00 39.43 2.32
140 141 4.446385 CGAATAATAAGTCGGGCGAAATGA 59.554 41.667 0.00 0.00 39.43 2.57
141 142 5.050634 CGAATAATAAGTCGGGCGAAATGAA 60.051 40.000 0.00 0.00 39.43 2.57
142 143 5.924475 ATAATAAGTCGGGCGAAATGAAG 57.076 39.130 0.00 0.00 0.00 3.02
143 144 2.754946 TAAGTCGGGCGAAATGAAGT 57.245 45.000 0.00 0.00 0.00 3.01
144 145 1.892209 AAGTCGGGCGAAATGAAGTT 58.108 45.000 0.00 0.00 0.00 2.66
145 146 2.754946 AGTCGGGCGAAATGAAGTTA 57.245 45.000 0.00 0.00 0.00 2.24
146 147 3.261981 AGTCGGGCGAAATGAAGTTAT 57.738 42.857 0.00 0.00 0.00 1.89
147 148 3.195661 AGTCGGGCGAAATGAAGTTATC 58.804 45.455 0.00 0.00 0.00 1.75
186 187 1.607628 GCAGATCCATGCATCTTCCAC 59.392 52.381 0.00 0.00 45.77 4.02
190 191 0.745486 TCCATGCATCTTCCACAGCG 60.745 55.000 0.00 0.00 0.00 5.18
191 192 1.721664 CCATGCATCTTCCACAGCGG 61.722 60.000 0.00 0.00 0.00 5.52
192 193 0.745486 CATGCATCTTCCACAGCGGA 60.745 55.000 0.00 0.00 44.40 5.54
193 194 0.182061 ATGCATCTTCCACAGCGGAT 59.818 50.000 0.00 0.00 45.80 4.18
194 195 0.035152 TGCATCTTCCACAGCGGATT 60.035 50.000 0.00 0.00 45.80 3.01
195 196 1.098050 GCATCTTCCACAGCGGATTT 58.902 50.000 0.00 0.00 45.80 2.17
196 197 1.202222 GCATCTTCCACAGCGGATTTG 60.202 52.381 0.00 0.00 45.80 2.32
197 198 1.402968 CATCTTCCACAGCGGATTTGG 59.597 52.381 0.00 0.00 45.80 3.28
198 199 0.690192 TCTTCCACAGCGGATTTGGA 59.310 50.000 0.00 0.00 45.80 3.53
199 200 0.804989 CTTCCACAGCGGATTTGGAC 59.195 55.000 0.00 0.00 45.80 4.02
200 201 0.109532 TTCCACAGCGGATTTGGACA 59.890 50.000 0.00 0.00 45.80 4.02
201 202 0.321564 TCCACAGCGGATTTGGACAG 60.322 55.000 0.00 0.00 39.64 3.51
202 203 0.321564 CCACAGCGGATTTGGACAGA 60.322 55.000 0.00 0.00 36.56 3.41
203 204 1.081892 CACAGCGGATTTGGACAGAG 58.918 55.000 0.00 0.00 0.00 3.35
204 205 0.976641 ACAGCGGATTTGGACAGAGA 59.023 50.000 0.00 0.00 0.00 3.10
205 206 1.556911 ACAGCGGATTTGGACAGAGAT 59.443 47.619 0.00 0.00 0.00 2.75
206 207 2.026822 ACAGCGGATTTGGACAGAGATT 60.027 45.455 0.00 0.00 0.00 2.40
207 208 3.197766 ACAGCGGATTTGGACAGAGATTA 59.802 43.478 0.00 0.00 0.00 1.75
208 209 3.806521 CAGCGGATTTGGACAGAGATTAG 59.193 47.826 0.00 0.00 0.00 1.73
209 210 3.134458 GCGGATTTGGACAGAGATTAGG 58.866 50.000 0.00 0.00 0.00 2.69
210 211 3.432326 GCGGATTTGGACAGAGATTAGGT 60.432 47.826 0.00 0.00 0.00 3.08
211 212 4.122776 CGGATTTGGACAGAGATTAGGTG 58.877 47.826 0.00 0.00 0.00 4.00
212 213 4.141937 CGGATTTGGACAGAGATTAGGTGA 60.142 45.833 0.00 0.00 0.00 4.02
213 214 5.119694 GGATTTGGACAGAGATTAGGTGAC 58.880 45.833 0.00 0.00 0.00 3.67
214 215 5.338381 GGATTTGGACAGAGATTAGGTGACA 60.338 44.000 0.00 0.00 0.00 3.58
215 216 5.762179 TTTGGACAGAGATTAGGTGACAT 57.238 39.130 0.00 0.00 0.00 3.06
216 217 4.743057 TGGACAGAGATTAGGTGACATG 57.257 45.455 0.00 0.00 0.00 3.21
217 218 3.118629 TGGACAGAGATTAGGTGACATGC 60.119 47.826 0.00 0.00 0.00 4.06
218 219 3.118629 GGACAGAGATTAGGTGACATGCA 60.119 47.826 0.00 0.00 0.00 3.96
219 220 4.444022 GGACAGAGATTAGGTGACATGCAT 60.444 45.833 0.00 0.00 0.00 3.96
220 221 4.701765 ACAGAGATTAGGTGACATGCATC 58.298 43.478 0.00 0.00 0.00 3.91
221 222 4.408270 ACAGAGATTAGGTGACATGCATCT 59.592 41.667 0.00 7.82 41.88 2.90
222 223 5.104610 ACAGAGATTAGGTGACATGCATCTT 60.105 40.000 7.98 0.00 39.20 2.40
223 224 5.821470 CAGAGATTAGGTGACATGCATCTTT 59.179 40.000 7.98 0.00 39.20 2.52
224 225 6.988580 CAGAGATTAGGTGACATGCATCTTTA 59.011 38.462 7.98 0.00 39.20 1.85
225 226 7.660617 CAGAGATTAGGTGACATGCATCTTTAT 59.339 37.037 7.98 3.82 39.20 1.40
226 227 8.874156 AGAGATTAGGTGACATGCATCTTTATA 58.126 33.333 7.98 0.00 39.20 0.98
227 228 9.664332 GAGATTAGGTGACATGCATCTTTATAT 57.336 33.333 7.98 1.88 39.20 0.86
228 229 9.445878 AGATTAGGTGACATGCATCTTTATATG 57.554 33.333 7.98 0.00 39.20 1.78
229 230 9.224267 GATTAGGTGACATGCATCTTTATATGT 57.776 33.333 7.98 0.00 39.20 2.29
230 231 8.607441 TTAGGTGACATGCATCTTTATATGTC 57.393 34.615 7.98 0.41 45.88 3.06
234 235 5.920312 GACATGCATCTTTATATGTCACCG 58.080 41.667 0.00 0.00 45.32 4.94
235 236 5.368145 ACATGCATCTTTATATGTCACCGT 58.632 37.500 0.00 0.00 0.00 4.83
236 237 5.237127 ACATGCATCTTTATATGTCACCGTG 59.763 40.000 0.00 0.00 0.00 4.94
237 238 4.765273 TGCATCTTTATATGTCACCGTGT 58.235 39.130 0.00 0.00 0.00 4.49
238 239 4.570369 TGCATCTTTATATGTCACCGTGTG 59.430 41.667 0.00 0.00 34.45 3.82
239 240 4.808895 GCATCTTTATATGTCACCGTGTGA 59.191 41.667 0.00 3.02 40.50 3.58
249 250 4.988598 CCGTGTGACTTGCGGCCT 62.989 66.667 0.00 0.00 38.99 5.19
250 251 2.048597 CGTGTGACTTGCGGCCTA 60.049 61.111 0.00 0.00 0.00 3.93
251 252 1.666553 CGTGTGACTTGCGGCCTAA 60.667 57.895 0.00 0.00 0.00 2.69
252 253 1.225376 CGTGTGACTTGCGGCCTAAA 61.225 55.000 0.00 0.00 0.00 1.85
253 254 1.165270 GTGTGACTTGCGGCCTAAAT 58.835 50.000 0.00 0.00 0.00 1.40
254 255 1.539827 GTGTGACTTGCGGCCTAAATT 59.460 47.619 0.00 0.00 0.00 1.82
255 256 2.030274 GTGTGACTTGCGGCCTAAATTT 60.030 45.455 0.00 0.00 0.00 1.82
256 257 3.189702 GTGTGACTTGCGGCCTAAATTTA 59.810 43.478 0.00 0.00 0.00 1.40
257 258 4.013728 TGTGACTTGCGGCCTAAATTTAT 58.986 39.130 0.00 0.00 0.00 1.40
258 259 5.065474 GTGTGACTTGCGGCCTAAATTTATA 59.935 40.000 0.00 0.00 0.00 0.98
259 260 5.825679 TGTGACTTGCGGCCTAAATTTATAT 59.174 36.000 0.00 0.00 0.00 0.86
260 261 6.320164 TGTGACTTGCGGCCTAAATTTATATT 59.680 34.615 0.00 0.00 0.00 1.28
261 262 7.147983 TGTGACTTGCGGCCTAAATTTATATTT 60.148 33.333 0.00 0.00 37.68 1.40
262 263 8.347035 GTGACTTGCGGCCTAAATTTATATTTA 58.653 33.333 0.00 0.00 35.61 1.40
263 264 8.904834 TGACTTGCGGCCTAAATTTATATTTAA 58.095 29.630 0.00 0.00 36.16 1.52
264 265 9.738832 GACTTGCGGCCTAAATTTATATTTAAA 57.261 29.630 0.00 0.00 36.16 1.52
265 266 9.524106 ACTTGCGGCCTAAATTTATATTTAAAC 57.476 29.630 0.00 0.00 36.16 2.01
266 267 9.522804 CTTGCGGCCTAAATTTATATTTAAACA 57.477 29.630 0.00 0.00 36.16 2.83
355 356 8.948853 TTCAGATCAAAATTCGAAACATACAC 57.051 30.769 0.00 0.00 0.00 2.90
356 357 7.526608 TCAGATCAAAATTCGAAACATACACC 58.473 34.615 0.00 0.00 0.00 4.16
357 358 7.174080 TCAGATCAAAATTCGAAACATACACCA 59.826 33.333 0.00 0.00 0.00 4.17
358 359 7.807433 CAGATCAAAATTCGAAACATACACCAA 59.193 33.333 0.00 0.00 0.00 3.67
359 360 8.023128 AGATCAAAATTCGAAACATACACCAAG 58.977 33.333 0.00 0.00 0.00 3.61
360 361 7.265647 TCAAAATTCGAAACATACACCAAGA 57.734 32.000 0.00 0.00 0.00 3.02
361 362 7.708051 TCAAAATTCGAAACATACACCAAGAA 58.292 30.769 0.00 0.00 0.00 2.52
362 363 8.191446 TCAAAATTCGAAACATACACCAAGAAA 58.809 29.630 0.00 0.00 0.00 2.52
363 364 7.924103 AAATTCGAAACATACACCAAGAAAC 57.076 32.000 0.00 0.00 0.00 2.78
364 365 6.627395 ATTCGAAACATACACCAAGAAACA 57.373 33.333 0.00 0.00 0.00 2.83
365 366 6.438259 TTCGAAACATACACCAAGAAACAA 57.562 33.333 0.00 0.00 0.00 2.83
366 367 6.438259 TCGAAACATACACCAAGAAACAAA 57.562 33.333 0.00 0.00 0.00 2.83
367 368 6.853720 TCGAAACATACACCAAGAAACAAAA 58.146 32.000 0.00 0.00 0.00 2.44
368 369 7.313646 TCGAAACATACACCAAGAAACAAAAA 58.686 30.769 0.00 0.00 0.00 1.94
409 410 9.988815 ATGAATAGTATACAGAGAACCATTCAC 57.011 33.333 5.50 0.00 33.96 3.18
410 411 8.977412 TGAATAGTATACAGAGAACCATTCACA 58.023 33.333 5.50 0.00 0.00 3.58
411 412 9.817809 GAATAGTATACAGAGAACCATTCACAA 57.182 33.333 5.50 0.00 0.00 3.33
412 413 9.601217 AATAGTATACAGAGAACCATTCACAAC 57.399 33.333 5.50 0.00 0.00 3.32
413 414 7.246171 AGTATACAGAGAACCATTCACAACT 57.754 36.000 5.50 0.00 0.00 3.16
414 415 8.362464 AGTATACAGAGAACCATTCACAACTA 57.638 34.615 5.50 0.00 0.00 2.24
415 416 8.982723 AGTATACAGAGAACCATTCACAACTAT 58.017 33.333 5.50 0.00 0.00 2.12
416 417 9.601217 GTATACAGAGAACCATTCACAACTATT 57.399 33.333 0.00 0.00 0.00 1.73
417 418 8.723942 ATACAGAGAACCATTCACAACTATTC 57.276 34.615 0.00 0.00 0.00 1.75
418 419 6.533730 ACAGAGAACCATTCACAACTATTCA 58.466 36.000 0.00 0.00 0.00 2.57
419 420 7.170965 ACAGAGAACCATTCACAACTATTCAT 58.829 34.615 0.00 0.00 0.00 2.57
420 421 8.321353 ACAGAGAACCATTCACAACTATTCATA 58.679 33.333 0.00 0.00 0.00 2.15
421 422 9.166173 CAGAGAACCATTCACAACTATTCATAA 57.834 33.333 0.00 0.00 0.00 1.90
422 423 9.167311 AGAGAACCATTCACAACTATTCATAAC 57.833 33.333 0.00 0.00 0.00 1.89
423 424 8.862325 AGAACCATTCACAACTATTCATAACA 57.138 30.769 0.00 0.00 0.00 2.41
424 425 8.950210 AGAACCATTCACAACTATTCATAACAG 58.050 33.333 0.00 0.00 0.00 3.16
425 426 8.862325 AACCATTCACAACTATTCATAACAGA 57.138 30.769 0.00 0.00 0.00 3.41
426 427 9.466497 AACCATTCACAACTATTCATAACAGAT 57.534 29.630 0.00 0.00 0.00 2.90
427 428 9.466497 ACCATTCACAACTATTCATAACAGATT 57.534 29.630 0.00 0.00 0.00 2.40
457 458 7.621832 TTTTTGCTTCTTGATGTATGTTTCG 57.378 32.000 0.00 0.00 0.00 3.46
458 459 6.552859 TTTGCTTCTTGATGTATGTTTCGA 57.447 33.333 0.00 0.00 0.00 3.71
459 460 6.552859 TTGCTTCTTGATGTATGTTTCGAA 57.447 33.333 0.00 0.00 0.00 3.71
460 461 6.741992 TGCTTCTTGATGTATGTTTCGAAT 57.258 33.333 0.00 0.00 0.00 3.34
461 462 7.144722 TGCTTCTTGATGTATGTTTCGAATT 57.855 32.000 0.00 0.00 0.00 2.17
462 463 7.592938 TGCTTCTTGATGTATGTTTCGAATTT 58.407 30.769 0.00 0.00 0.00 1.82
463 464 8.081633 TGCTTCTTGATGTATGTTTCGAATTTT 58.918 29.630 0.00 0.00 0.00 1.82
464 465 8.368126 GCTTCTTGATGTATGTTTCGAATTTTG 58.632 33.333 0.00 0.00 0.00 2.44
465 466 9.611284 CTTCTTGATGTATGTTTCGAATTTTGA 57.389 29.630 0.00 0.00 0.00 2.69
467 468 9.773328 TCTTGATGTATGTTTCGAATTTTGATC 57.227 29.630 0.00 0.00 0.00 2.92
468 469 9.778993 CTTGATGTATGTTTCGAATTTTGATCT 57.221 29.630 0.00 0.00 0.00 2.75
469 470 9.558648 TTGATGTATGTTTCGAATTTTGATCTG 57.441 29.630 0.00 0.00 0.00 2.90
470 471 8.945057 TGATGTATGTTTCGAATTTTGATCTGA 58.055 29.630 0.00 0.00 0.00 3.27
471 472 9.941664 GATGTATGTTTCGAATTTTGATCTGAT 57.058 29.630 0.00 0.00 0.00 2.90
509 510 8.625786 ATCTTAATATGTGCTATGAACATGCA 57.374 30.769 1.67 0.00 38.67 3.96
510 511 8.625786 TCTTAATATGTGCTATGAACATGCAT 57.374 30.769 0.00 0.00 38.67 3.96
511 512 8.508875 TCTTAATATGTGCTATGAACATGCATG 58.491 33.333 25.09 25.09 38.67 4.06
512 513 6.887626 AATATGTGCTATGAACATGCATGA 57.112 33.333 32.75 11.53 38.67 3.07
513 514 7.462571 AATATGTGCTATGAACATGCATGAT 57.537 32.000 32.75 22.02 38.67 2.45
514 515 5.784578 ATGTGCTATGAACATGCATGATT 57.215 34.783 32.75 21.39 36.89 2.57
515 516 5.585820 TGTGCTATGAACATGCATGATTT 57.414 34.783 32.75 17.59 39.00 2.17
516 517 5.968254 TGTGCTATGAACATGCATGATTTT 58.032 33.333 32.75 16.83 39.00 1.82
517 518 6.399743 TGTGCTATGAACATGCATGATTTTT 58.600 32.000 32.75 16.45 39.00 1.94
555 556 8.504812 ACAATGTTTAAATATGAATTTGGGCC 57.495 30.769 0.00 0.00 36.02 5.80
556 557 7.279758 ACAATGTTTAAATATGAATTTGGGCCG 59.720 33.333 0.00 0.00 36.02 6.13
557 558 5.112686 TGTTTAAATATGAATTTGGGCCGC 58.887 37.500 0.00 0.00 36.02 6.53
558 559 5.112686 GTTTAAATATGAATTTGGGCCGCA 58.887 37.500 0.00 0.00 36.02 5.69
559 560 3.902881 AAATATGAATTTGGGCCGCAA 57.097 38.095 0.00 0.00 33.97 4.85
560 561 3.457610 AATATGAATTTGGGCCGCAAG 57.542 42.857 0.00 0.00 0.00 4.01
561 562 1.846007 TATGAATTTGGGCCGCAAGT 58.154 45.000 0.00 0.00 0.00 3.16
562 563 0.532115 ATGAATTTGGGCCGCAAGTC 59.468 50.000 8.38 8.38 0.00 3.01
563 564 0.825425 TGAATTTGGGCCGCAAGTCA 60.825 50.000 12.79 12.79 0.00 3.41
564 565 0.388520 GAATTTGGGCCGCAAGTCAC 60.389 55.000 10.00 1.48 0.00 3.67
565 566 1.112315 AATTTGGGCCGCAAGTCACA 61.112 50.000 0.00 0.00 0.00 3.58
566 567 0.899717 ATTTGGGCCGCAAGTCACAT 60.900 50.000 0.00 0.00 0.00 3.21
567 568 1.804396 TTTGGGCCGCAAGTCACATG 61.804 55.000 0.00 0.00 0.00 3.21
568 569 3.443045 GGGCCGCAAGTCACATGG 61.443 66.667 0.00 0.00 0.00 3.66
569 570 2.672996 GGCCGCAAGTCACATGGT 60.673 61.111 0.00 0.00 0.00 3.55
570 571 2.562912 GCCGCAAGTCACATGGTG 59.437 61.111 0.00 0.00 34.45 4.17
571 572 1.965930 GCCGCAAGTCACATGGTGA 60.966 57.895 0.00 0.00 40.50 4.02
584 585 2.040330 TGGTGACATGCAAAGGTGC 58.960 52.632 0.00 0.00 43.79 5.01
599 600 2.785868 GTGCATGTCACCTGATCCC 58.214 57.895 8.54 0.00 39.79 3.85
600 601 0.254178 GTGCATGTCACCTGATCCCT 59.746 55.000 8.54 0.00 39.79 4.20
601 602 0.253894 TGCATGTCACCTGATCCCTG 59.746 55.000 0.00 0.00 0.00 4.45
602 603 0.254178 GCATGTCACCTGATCCCTGT 59.746 55.000 0.00 0.00 0.00 4.00
603 604 1.745141 GCATGTCACCTGATCCCTGTC 60.745 57.143 0.00 0.00 0.00 3.51
604 605 1.134280 CATGTCACCTGATCCCTGTCC 60.134 57.143 0.00 0.00 0.00 4.02
605 606 0.178906 TGTCACCTGATCCCTGTCCA 60.179 55.000 0.00 0.00 0.00 4.02
606 607 0.539051 GTCACCTGATCCCTGTCCAG 59.461 60.000 0.00 0.00 0.00 3.86
607 608 1.222936 CACCTGATCCCTGTCCAGC 59.777 63.158 0.00 0.00 0.00 4.85
608 609 2.362369 ACCTGATCCCTGTCCAGCG 61.362 63.158 0.00 0.00 0.00 5.18
609 610 2.503061 CTGATCCCTGTCCAGCGG 59.497 66.667 0.00 0.00 0.00 5.52
626 627 1.066929 GCGGATTTGGCCTGTTCAAAT 60.067 47.619 3.32 0.08 44.53 2.32
631 632 4.263025 GGATTTGGCCTGTTCAAATTTCCT 60.263 41.667 3.32 0.00 42.68 3.36
633 634 3.749665 TGGCCTGTTCAAATTTCCTTG 57.250 42.857 3.32 0.00 0.00 3.61
637 638 4.202253 GGCCTGTTCAAATTTCCTTGTTCT 60.202 41.667 0.00 0.00 0.00 3.01
686 698 1.202533 CCTTGTCAGGACAGTCGTTGT 60.203 52.381 2.01 0.00 44.19 3.32
687 699 2.550978 CTTGTCAGGACAGTCGTTGTT 58.449 47.619 2.01 0.00 42.94 2.83
688 700 3.491964 CCTTGTCAGGACAGTCGTTGTTA 60.492 47.826 2.01 0.00 44.19 2.41
689 701 4.307432 CTTGTCAGGACAGTCGTTGTTAT 58.693 43.478 2.01 0.00 42.94 1.89
690 702 5.456548 TTGTCAGGACAGTCGTTGTTATA 57.543 39.130 2.01 0.00 42.94 0.98
692 704 4.521639 TGTCAGGACAGTCGTTGTTATAGT 59.478 41.667 0.00 0.00 41.05 2.12
693 705 5.010314 TGTCAGGACAGTCGTTGTTATAGTT 59.990 40.000 0.00 0.00 41.05 2.24
694 706 5.924825 GTCAGGACAGTCGTTGTTATAGTTT 59.075 40.000 0.00 0.00 41.05 2.66
695 707 6.423001 GTCAGGACAGTCGTTGTTATAGTTTT 59.577 38.462 0.00 0.00 41.05 2.43
696 708 7.596248 GTCAGGACAGTCGTTGTTATAGTTTTA 59.404 37.037 0.00 0.00 41.05 1.52
697 709 8.143193 TCAGGACAGTCGTTGTTATAGTTTTAA 58.857 33.333 0.00 0.00 41.05 1.52
698 710 8.767085 CAGGACAGTCGTTGTTATAGTTTTAAA 58.233 33.333 0.00 0.00 41.05 1.52
699 711 9.498176 AGGACAGTCGTTGTTATAGTTTTAAAT 57.502 29.630 0.00 0.00 41.05 1.40
703 715 9.698617 CAGTCGTTGTTATAGTTTTAAATAGCC 57.301 33.333 0.00 0.00 0.00 3.93
704 716 8.598075 AGTCGTTGTTATAGTTTTAAATAGCCG 58.402 33.333 0.00 0.00 0.00 5.52
705 717 7.847564 GTCGTTGTTATAGTTTTAAATAGCCGG 59.152 37.037 0.00 0.00 0.00 6.13
706 718 6.630045 CGTTGTTATAGTTTTAAATAGCCGGC 59.370 38.462 21.89 21.89 0.00 6.13
707 719 7.466320 CGTTGTTATAGTTTTAAATAGCCGGCT 60.466 37.037 34.85 34.85 0.00 5.52
708 720 8.829612 GTTGTTATAGTTTTAAATAGCCGGCTA 58.170 33.333 36.88 36.88 0.00 3.93
709 721 9.563748 TTGTTATAGTTTTAAATAGCCGGCTAT 57.436 29.630 37.79 37.79 40.63 2.97
712 724 7.845066 ATAGTTTTAAATAGCCGGCTATAGC 57.155 36.000 41.53 29.09 38.20 2.97
729 741 2.231215 AGCCTCGCTATAGCTGTTTG 57.769 50.000 21.98 6.69 36.99 2.93
730 742 1.757118 AGCCTCGCTATAGCTGTTTGA 59.243 47.619 21.98 10.60 36.99 2.69
731 743 2.131183 GCCTCGCTATAGCTGTTTGAG 58.869 52.381 21.98 18.40 39.32 3.02
732 744 2.748605 CCTCGCTATAGCTGTTTGAGG 58.251 52.381 23.06 23.06 37.34 3.86
733 745 2.546795 CCTCGCTATAGCTGTTTGAGGG 60.547 54.545 26.16 14.48 38.89 4.30
734 746 2.101582 CTCGCTATAGCTGTTTGAGGGT 59.898 50.000 21.98 0.00 39.32 4.34
735 747 2.159099 TCGCTATAGCTGTTTGAGGGTG 60.159 50.000 21.98 2.62 39.32 4.61
736 748 2.418746 CGCTATAGCTGTTTGAGGGTGT 60.419 50.000 21.98 0.00 39.32 4.16
737 749 3.610911 GCTATAGCTGTTTGAGGGTGTT 58.389 45.455 17.75 0.00 38.21 3.32
738 750 3.375299 GCTATAGCTGTTTGAGGGTGTTG 59.625 47.826 17.75 0.00 38.21 3.33
739 751 1.604604 TAGCTGTTTGAGGGTGTTGC 58.395 50.000 0.00 0.00 0.00 4.17
740 752 1.109323 AGCTGTTTGAGGGTGTTGCC 61.109 55.000 0.00 0.00 0.00 4.52
741 753 1.654220 CTGTTTGAGGGTGTTGCCG 59.346 57.895 0.00 0.00 38.44 5.69
742 754 2.335011 GTTTGAGGGTGTTGCCGC 59.665 61.111 0.00 0.00 38.44 6.53
743 755 2.193536 GTTTGAGGGTGTTGCCGCT 61.194 57.895 0.00 0.00 38.44 5.52
744 756 0.887387 GTTTGAGGGTGTTGCCGCTA 60.887 55.000 0.00 0.00 38.44 4.26
745 757 0.179015 TTTGAGGGTGTTGCCGCTAA 60.179 50.000 0.00 0.00 38.44 3.09
746 758 0.179015 TTGAGGGTGTTGCCGCTAAA 60.179 50.000 0.00 0.00 38.44 1.85
747 759 0.037590 TGAGGGTGTTGCCGCTAAAT 59.962 50.000 0.00 0.00 38.44 1.40
748 760 0.451783 GAGGGTGTTGCCGCTAAATG 59.548 55.000 0.00 0.00 38.44 2.32
749 761 0.037590 AGGGTGTTGCCGCTAAATGA 59.962 50.000 0.00 0.00 38.44 2.57
750 762 1.102978 GGGTGTTGCCGCTAAATGAT 58.897 50.000 0.00 0.00 38.44 2.45
751 763 1.476488 GGGTGTTGCCGCTAAATGATT 59.524 47.619 0.00 0.00 38.44 2.57
752 764 2.094234 GGGTGTTGCCGCTAAATGATTT 60.094 45.455 0.00 0.00 38.44 2.17
753 765 3.179048 GGTGTTGCCGCTAAATGATTTC 58.821 45.455 0.00 0.00 0.00 2.17
754 766 3.366883 GGTGTTGCCGCTAAATGATTTCA 60.367 43.478 0.00 0.00 0.00 2.69
755 767 4.423732 GTGTTGCCGCTAAATGATTTCAT 58.576 39.130 0.00 0.00 38.41 2.57
756 768 4.266029 GTGTTGCCGCTAAATGATTTCATG 59.734 41.667 0.00 0.00 36.56 3.07
757 769 4.082300 TGTTGCCGCTAAATGATTTCATGT 60.082 37.500 0.00 0.00 36.56 3.21
758 770 5.124617 TGTTGCCGCTAAATGATTTCATGTA 59.875 36.000 0.00 0.00 36.56 2.29
759 771 5.168526 TGCCGCTAAATGATTTCATGTAC 57.831 39.130 0.00 0.00 36.56 2.90
760 772 4.637977 TGCCGCTAAATGATTTCATGTACA 59.362 37.500 0.00 0.00 36.56 2.90
761 773 5.124617 TGCCGCTAAATGATTTCATGTACAA 59.875 36.000 0.00 0.00 36.56 2.41
762 774 6.183360 TGCCGCTAAATGATTTCATGTACAAT 60.183 34.615 0.00 0.00 36.56 2.71
763 775 6.697019 GCCGCTAAATGATTTCATGTACAATT 59.303 34.615 0.00 0.00 36.56 2.32
764 776 7.222611 GCCGCTAAATGATTTCATGTACAATTT 59.777 33.333 0.00 2.18 36.56 1.82
765 777 8.533965 CCGCTAAATGATTTCATGTACAATTTG 58.466 33.333 0.00 0.00 36.56 2.32
766 778 8.051909 CGCTAAATGATTTCATGTACAATTTGC 58.948 33.333 0.00 5.70 36.56 3.68
767 779 8.330302 GCTAAATGATTTCATGTACAATTTGCC 58.670 33.333 0.00 0.00 36.56 4.52
768 780 6.890663 AATGATTTCATGTACAATTTGCCG 57.109 33.333 0.00 0.00 36.56 5.69
769 781 4.172505 TGATTTCATGTACAATTTGCCGC 58.827 39.130 0.00 0.00 0.00 6.53
770 782 3.932545 TTTCATGTACAATTTGCCGCT 57.067 38.095 0.00 0.00 0.00 5.52
771 783 5.124617 TGATTTCATGTACAATTTGCCGCTA 59.875 36.000 0.00 0.00 0.00 4.26
772 784 5.574891 TTTCATGTACAATTTGCCGCTAT 57.425 34.783 0.00 0.00 0.00 2.97
773 785 6.685527 TTTCATGTACAATTTGCCGCTATA 57.314 33.333 0.00 0.00 0.00 1.31
774 786 5.922739 TCATGTACAATTTGCCGCTATAG 57.077 39.130 0.00 0.00 0.00 1.31
775 787 4.213270 TCATGTACAATTTGCCGCTATAGC 59.787 41.667 15.09 15.09 37.78 2.97
776 788 3.804036 TGTACAATTTGCCGCTATAGCT 58.196 40.909 21.98 3.04 39.32 3.32
777 789 3.807622 TGTACAATTTGCCGCTATAGCTC 59.192 43.478 21.98 13.79 39.32 4.09
778 790 2.222027 ACAATTTGCCGCTATAGCTCC 58.778 47.619 21.98 12.84 39.32 4.70
779 791 1.195448 CAATTTGCCGCTATAGCTCCG 59.805 52.381 21.98 10.49 39.32 4.63
780 792 0.951040 ATTTGCCGCTATAGCTCCGC 60.951 55.000 21.98 19.09 39.32 5.54
781 793 2.028125 TTTGCCGCTATAGCTCCGCT 62.028 55.000 21.98 0.00 43.41 5.52
782 794 1.176619 TTGCCGCTATAGCTCCGCTA 61.177 55.000 21.98 13.97 45.55 4.26
791 803 1.752683 TAGCTCCGCTATAGCCTAGC 58.247 55.000 27.03 27.03 42.34 3.42
792 804 0.039035 AGCTCCGCTATAGCCTAGCT 59.961 55.000 29.56 29.56 45.23 3.32
793 805 1.282447 AGCTCCGCTATAGCCTAGCTA 59.718 52.381 32.02 9.75 46.92 3.32
812 824 5.405331 GCTATAGCTGTTTTTAAGGGTCG 57.595 43.478 17.75 0.00 38.21 4.79
813 825 4.260661 GCTATAGCTGTTTTTAAGGGTCGC 60.261 45.833 17.75 0.00 38.21 5.19
814 826 1.244816 AGCTGTTTTTAAGGGTCGCC 58.755 50.000 0.00 0.00 0.00 5.54
815 827 0.109919 GCTGTTTTTAAGGGTCGCCG 60.110 55.000 0.00 0.00 0.00 6.46
816 828 0.109919 CTGTTTTTAAGGGTCGCCGC 60.110 55.000 0.00 0.00 0.00 6.53
817 829 0.535553 TGTTTTTAAGGGTCGCCGCT 60.536 50.000 0.00 0.00 34.93 5.52
818 830 1.270732 TGTTTTTAAGGGTCGCCGCTA 60.271 47.619 0.00 0.00 32.78 4.26
819 831 1.805943 GTTTTTAAGGGTCGCCGCTAA 59.194 47.619 0.00 0.00 32.78 3.09
820 832 2.181954 TTTTAAGGGTCGCCGCTAAA 57.818 45.000 0.00 0.00 32.78 1.85
821 833 2.406596 TTTAAGGGTCGCCGCTAAAT 57.593 45.000 0.00 0.00 32.78 1.40
822 834 1.658994 TTAAGGGTCGCCGCTAAATG 58.341 50.000 0.00 0.00 32.78 2.32
823 835 0.812412 TAAGGGTCGCCGCTAAATGC 60.812 55.000 0.00 0.00 38.57 3.56
824 836 3.583086 GGGTCGCCGCTAAATGCC 61.583 66.667 0.00 0.00 38.78 4.40
825 837 2.822255 GGTCGCCGCTAAATGCCA 60.822 61.111 0.00 0.00 38.78 4.92
826 838 2.186826 GGTCGCCGCTAAATGCCAT 61.187 57.895 0.00 0.00 38.78 4.40
827 839 0.882927 GGTCGCCGCTAAATGCCATA 60.883 55.000 0.00 0.00 38.78 2.74
828 840 0.512952 GTCGCCGCTAAATGCCATAG 59.487 55.000 0.00 0.00 38.78 2.23
829 841 1.207593 CGCCGCTAAATGCCATAGC 59.792 57.895 3.20 3.20 41.85 2.97
830 842 1.581447 GCCGCTAAATGCCATAGCC 59.419 57.895 6.85 0.00 42.18 3.93
831 843 1.866853 GCCGCTAAATGCCATAGCCC 61.867 60.000 6.85 0.00 42.18 5.19
832 844 1.577328 CCGCTAAATGCCATAGCCCG 61.577 60.000 6.85 0.00 42.18 6.13
833 845 1.581447 GCTAAATGCCATAGCCCGC 59.419 57.895 2.08 0.00 39.87 6.13
834 846 0.890996 GCTAAATGCCATAGCCCGCT 60.891 55.000 0.00 0.00 39.87 5.52
835 847 1.610624 GCTAAATGCCATAGCCCGCTA 60.611 52.381 0.00 0.00 39.87 4.26
836 848 2.941415 GCTAAATGCCATAGCCCGCTAT 60.941 50.000 3.31 3.31 39.87 2.97
837 849 2.292828 AAATGCCATAGCCCGCTATT 57.707 45.000 6.48 0.00 37.16 1.73
838 850 2.292828 AATGCCATAGCCCGCTATTT 57.707 45.000 6.48 0.00 37.16 1.40
839 851 3.433306 AATGCCATAGCCCGCTATTTA 57.567 42.857 6.48 0.00 37.16 1.40
840 852 2.940994 TGCCATAGCCCGCTATTTAA 57.059 45.000 6.48 0.00 37.16 1.52
841 853 3.216187 TGCCATAGCCCGCTATTTAAA 57.784 42.857 6.48 0.00 37.16 1.52
842 854 3.556999 TGCCATAGCCCGCTATTTAAAA 58.443 40.909 6.48 0.00 37.16 1.52
843 855 4.148838 TGCCATAGCCCGCTATTTAAAAT 58.851 39.130 6.48 0.00 37.16 1.82
844 856 5.317808 TGCCATAGCCCGCTATTTAAAATA 58.682 37.500 6.48 0.00 37.16 1.40
845 857 5.949354 TGCCATAGCCCGCTATTTAAAATAT 59.051 36.000 6.48 0.00 37.16 1.28
846 858 6.435904 TGCCATAGCCCGCTATTTAAAATATT 59.564 34.615 6.48 0.00 37.16 1.28
847 859 6.751888 GCCATAGCCCGCTATTTAAAATATTG 59.248 38.462 6.48 0.00 37.16 1.90
848 860 7.257722 CCATAGCCCGCTATTTAAAATATTGG 58.742 38.462 6.48 0.00 37.16 3.16
849 861 7.093945 CCATAGCCCGCTATTTAAAATATTGGT 60.094 37.037 6.48 0.00 37.16 3.67
850 862 6.327279 AGCCCGCTATTTAAAATATTGGTC 57.673 37.500 0.00 0.00 0.00 4.02
851 863 5.048991 AGCCCGCTATTTAAAATATTGGTCG 60.049 40.000 0.00 0.00 0.00 4.79
852 864 5.278120 GCCCGCTATTTAAAATATTGGTCGT 60.278 40.000 0.00 0.00 0.00 4.34
853 865 6.731164 CCCGCTATTTAAAATATTGGTCGTT 58.269 36.000 0.00 0.00 0.00 3.85
854 866 6.635239 CCCGCTATTTAAAATATTGGTCGTTG 59.365 38.462 0.00 0.00 0.00 4.10
858 870 6.862944 ATTTAAAATATTGGTCGTTGCACG 57.137 33.333 0.00 0.00 44.19 5.34
859 871 2.256445 AAATATTGGTCGTTGCACGC 57.744 45.000 4.15 0.00 42.21 5.34
922 934 0.875908 CACACACGCTGCACTGTACT 60.876 55.000 0.00 0.00 0.00 2.73
926 938 1.227527 ACGCTGCACTGTACTGCAA 60.228 52.632 10.60 0.00 46.46 4.08
929 941 1.165907 GCTGCACTGTACTGCAACCA 61.166 55.000 10.60 0.00 46.46 3.67
931 943 1.165907 TGCACTGTACTGCAACCAGC 61.166 55.000 7.29 0.49 44.28 4.85
932 944 1.856265 GCACTGTACTGCAACCAGCC 61.856 60.000 2.40 0.00 43.02 4.85
934 946 0.250467 ACTGTACTGCAACCAGCCTG 60.250 55.000 6.80 0.00 43.02 4.85
935 947 0.957395 CTGTACTGCAACCAGCCTGG 60.957 60.000 9.83 9.83 43.02 4.45
937 949 2.153401 TACTGCAACCAGCCTGGGT 61.153 57.895 16.70 5.24 43.37 4.51
956 979 1.192146 TTCCAGGAGTCGGGGTCTTG 61.192 60.000 0.00 0.00 0.00 3.02
961 984 1.192803 GGAGTCGGGGTCTTGAGGTT 61.193 60.000 0.00 0.00 0.00 3.50
963 986 1.003718 GTCGGGGTCTTGAGGTTGG 60.004 63.158 0.00 0.00 0.00 3.77
1037 3393 2.282958 AGAACCGGCCGAGAGACA 60.283 61.111 30.73 0.00 0.00 3.41
1128 3484 0.376152 CAGGCACAGTCGCATCATTC 59.624 55.000 0.00 0.00 0.00 2.67
1131 3487 1.083806 GCACAGTCGCATCATTCCGA 61.084 55.000 0.00 0.00 0.00 4.55
1134 3490 0.298707 CAGTCGCATCATTCCGAACG 59.701 55.000 0.00 0.00 35.00 3.95
1260 3619 0.249784 CGATGATGCCACTGGAGAGG 60.250 60.000 0.00 0.00 0.00 3.69
1299 3658 2.082231 CATGAGTGTTGGGAGCAGAAG 58.918 52.381 0.00 0.00 0.00 2.85
1351 3710 2.283173 TGTCTCTGAGCCCGAGCA 60.283 61.111 0.00 0.00 43.56 4.26
1360 3719 2.125753 GCCCGAGCAGTCAGTCAG 60.126 66.667 0.00 0.00 39.53 3.51
1375 3734 2.032204 CAGTCAGCTTGTGTCTGCTTTC 60.032 50.000 0.00 0.00 35.86 2.62
1380 3739 1.610522 GCTTGTGTCTGCTTTCCATGT 59.389 47.619 0.00 0.00 0.00 3.21
1383 3742 2.653726 TGTGTCTGCTTTCCATGTTGT 58.346 42.857 0.00 0.00 0.00 3.32
1384 3743 2.358582 TGTGTCTGCTTTCCATGTTGTG 59.641 45.455 0.00 0.00 0.00 3.33
1395 3758 0.438445 CATGTTGTGCCGACAGTACG 59.562 55.000 2.37 0.00 32.98 3.67
1428 3791 1.066143 ACAGTGGCACGATTCCCTTAG 60.066 52.381 12.71 0.00 0.00 2.18
1436 3799 4.299978 GCACGATTCCCTTAGAGTACATC 58.700 47.826 0.00 0.00 0.00 3.06
1445 3808 4.515944 CCCTTAGAGTACATCTGGACTACG 59.484 50.000 0.00 0.00 39.20 3.51
1449 3812 1.405821 AGTACATCTGGACTACGCTGC 59.594 52.381 0.00 0.00 0.00 5.25
1463 4737 2.240500 GCTGCGCCGTTAGAGGATG 61.241 63.158 4.18 0.00 0.00 3.51
1468 4742 1.849097 CGCCGTTAGAGGATGTAACC 58.151 55.000 0.00 0.00 41.35 2.85
1472 4746 3.703420 CCGTTAGAGGATGTAACCGAAG 58.297 50.000 0.00 0.00 41.35 3.79
1475 4749 0.831307 AGAGGATGTAACCGAAGCCC 59.169 55.000 0.00 0.00 34.73 5.19
1481 4755 2.083167 TGTAACCGAAGCCCTAAACG 57.917 50.000 0.00 0.00 0.00 3.60
1511 4785 3.770040 CCCTCGCATGTCCCGTCA 61.770 66.667 0.00 0.00 0.00 4.35
1512 4786 2.509336 CCTCGCATGTCCCGTCAC 60.509 66.667 0.00 0.00 0.00 3.67
1518 4792 2.032634 CATGTCCCGTCACCAACCG 61.033 63.158 0.00 0.00 0.00 4.44
1524 4798 2.430244 CGTCACCAACCGTCTCCG 60.430 66.667 0.00 0.00 0.00 4.63
1527 4801 1.829096 TCACCAACCGTCTCCGTCA 60.829 57.895 0.00 0.00 0.00 4.35
1529 4803 0.320421 CACCAACCGTCTCCGTCATT 60.320 55.000 0.00 0.00 0.00 2.57
1532 4806 1.278238 CAACCGTCTCCGTCATTAGC 58.722 55.000 0.00 0.00 0.00 3.09
1555 4829 5.410439 GCAGTGAAGTCCGAAATAAACCTTA 59.590 40.000 0.00 0.00 0.00 2.69
1563 4837 7.378181 AGTCCGAAATAAACCTTAAACTCGTA 58.622 34.615 0.00 0.00 0.00 3.43
1565 4839 7.116233 GTCCGAAATAAACCTTAAACTCGTACA 59.884 37.037 0.00 0.00 0.00 2.90
1569 4843 7.895975 AATAAACCTTAAACTCGTACACCTC 57.104 36.000 0.00 0.00 0.00 3.85
1573 4847 3.058016 CCTTAAACTCGTACACCTCGACA 60.058 47.826 0.00 0.00 33.71 4.35
1596 4878 6.323996 ACAGAATCAAATCCATGCAATCTCAT 59.676 34.615 0.00 0.00 0.00 2.90
1607 4889 1.531264 GCAATCTCATGCAACGCTGAG 60.531 52.381 8.47 8.47 45.70 3.35
1620 4902 4.610007 GCAACGCTGAGATAACATGCATAG 60.610 45.833 0.00 0.00 33.00 2.23
1663 4945 8.097038 ACACACAACATGAGAGACTTTATACAT 58.903 33.333 0.00 0.00 0.00 2.29
1664 4946 8.385858 CACACAACATGAGAGACTTTATACATG 58.614 37.037 0.00 0.00 40.24 3.21
1665 4947 8.097038 ACACAACATGAGAGACTTTATACATGT 58.903 33.333 2.69 2.69 46.20 3.21
1666 4948 8.598924 CACAACATGAGAGACTTTATACATGTC 58.401 37.037 0.00 0.00 44.44 3.06
1667 4949 7.489435 ACAACATGAGAGACTTTATACATGTCG 59.511 37.037 0.00 0.00 44.44 4.35
1668 4950 7.101652 ACATGAGAGACTTTATACATGTCGT 57.898 36.000 0.00 0.00 42.59 4.34
1669 4951 7.197017 ACATGAGAGACTTTATACATGTCGTC 58.803 38.462 0.00 2.98 42.59 4.20
1670 4952 5.807344 TGAGAGACTTTATACATGTCGTCG 58.193 41.667 0.00 0.00 35.19 5.12
1671 4953 5.171147 AGAGACTTTATACATGTCGTCGG 57.829 43.478 0.00 0.00 35.19 4.79
1672 4954 4.880120 AGAGACTTTATACATGTCGTCGGA 59.120 41.667 0.00 0.00 35.19 4.55
1673 4955 4.918037 AGACTTTATACATGTCGTCGGAC 58.082 43.478 0.00 0.00 43.71 4.79
1674 4956 4.639310 AGACTTTATACATGTCGTCGGACT 59.361 41.667 0.00 0.00 43.79 3.85
1675 4957 5.819379 AGACTTTATACATGTCGTCGGACTA 59.181 40.000 0.00 0.00 43.79 2.59
1676 4958 5.814783 ACTTTATACATGTCGTCGGACTAC 58.185 41.667 0.00 6.21 43.79 2.73
1677 4959 4.818534 TTATACATGTCGTCGGACTACC 57.181 45.455 0.00 0.00 43.79 3.18
1689 4971 3.930848 GTCGGACTACCAAAAATCGACAT 59.069 43.478 0.00 0.00 43.08 3.06
1700 4982 8.888579 ACCAAAAATCGACATATTCTACTAGG 57.111 34.615 0.00 0.00 0.00 3.02
1702 4984 9.976511 CCAAAAATCGACATATTCTACTAGGTA 57.023 33.333 0.00 0.00 0.00 3.08
1758 5040 0.037975 CGCCCTTGCATTTGCTCTTT 60.038 50.000 3.94 0.00 42.66 2.52
1760 5042 1.274447 GCCCTTGCATTTGCTCTTTCT 59.726 47.619 3.94 0.00 42.66 2.52
1764 5046 3.367087 CCTTGCATTTGCTCTTTCTCCTG 60.367 47.826 3.94 0.00 42.66 3.86
1772 5054 2.289320 TGCTCTTTCTCCTGCAGTCTTC 60.289 50.000 13.81 0.00 0.00 2.87
1790 5072 0.666274 TCGTCGTCGAAGCAGCAATT 60.666 50.000 1.37 0.00 43.34 2.32
1794 5076 1.870402 TCGTCGAAGCAGCAATTGAAA 59.130 42.857 10.34 0.00 0.00 2.69
1825 5107 1.539388 GATCGAGTCGGATCTGCTCAT 59.461 52.381 13.54 13.84 39.75 2.90
1826 5108 1.393603 TCGAGTCGGATCTGCTCATT 58.606 50.000 13.54 0.00 0.00 2.57
1829 5111 0.829333 AGTCGGATCTGCTCATTGCT 59.171 50.000 0.00 0.00 43.37 3.91
1830 5112 0.935898 GTCGGATCTGCTCATTGCTG 59.064 55.000 0.00 0.00 43.37 4.41
1831 5113 0.179065 TCGGATCTGCTCATTGCTGG 60.179 55.000 0.00 0.00 43.37 4.85
1832 5114 0.463295 CGGATCTGCTCATTGCTGGT 60.463 55.000 0.00 0.00 43.37 4.00
1833 5115 1.022735 GGATCTGCTCATTGCTGGTG 58.977 55.000 0.00 0.00 43.37 4.17
1834 5116 1.681166 GGATCTGCTCATTGCTGGTGT 60.681 52.381 0.00 0.00 43.37 4.16
1835 5117 2.089980 GATCTGCTCATTGCTGGTGTT 58.910 47.619 0.00 0.00 43.37 3.32
1836 5118 1.241165 TCTGCTCATTGCTGGTGTTG 58.759 50.000 0.00 0.00 43.37 3.33
1859 5141 2.675772 GTCCGTCACCGACCTCCT 60.676 66.667 0.00 0.00 35.63 3.69
1863 5145 2.408241 CGTCACCGACCTCCTCCTC 61.408 68.421 0.00 0.00 35.63 3.71
1911 5193 2.569354 GCACAATGCCCGGGTTTGA 61.569 57.895 32.30 14.02 37.42 2.69
1917 5199 1.937191 ATGCCCGGGTTTGATTCTTT 58.063 45.000 24.63 0.00 0.00 2.52
1930 5212 0.238289 ATTCTTTGCAAGGTCACGCG 59.762 50.000 3.53 3.53 0.00 6.01
1968 5250 1.079266 GCCATGCCGAAAATTGCCA 60.079 52.632 0.00 0.00 0.00 4.92
1971 5253 2.149578 CCATGCCGAAAATTGCCAAAA 58.850 42.857 0.00 0.00 0.00 2.44
1973 5255 3.365164 CCATGCCGAAAATTGCCAAAAAG 60.365 43.478 0.00 0.00 0.00 2.27
2002 5284 1.290324 GTTGAGCTGAGCGGTCTGA 59.710 57.895 23.43 0.00 40.75 3.27
2018 5300 2.563179 GTCTGAAAGTGGAGTGCCTAGA 59.437 50.000 0.00 0.00 33.76 2.43
2026 5308 4.353777 AGTGGAGTGCCTAGAGTTTGATA 58.646 43.478 0.00 0.00 34.31 2.15
2035 5317 3.069586 CCTAGAGTTTGATACGGGATGCA 59.930 47.826 0.00 0.00 0.00 3.96
2041 5323 4.588951 AGTTTGATACGGGATGCAGATAGA 59.411 41.667 0.00 0.00 0.00 1.98
2068 5350 6.273071 CACATATTTGTGTAGTCGAGATGGA 58.727 40.000 8.02 0.00 46.68 3.41
2073 5355 1.103803 TGTAGTCGAGATGGACCAGC 58.896 55.000 0.00 0.00 37.66 4.85
2085 5367 4.344865 ACCAGCGTGGGCCGATTT 62.345 61.111 0.00 0.00 43.37 2.17
2087 5369 2.436646 CAGCGTGGGCCGATTTCT 60.437 61.111 0.00 0.00 41.24 2.52
2089 5371 0.532862 CAGCGTGGGCCGATTTCTAT 60.533 55.000 0.00 0.00 41.24 1.98
2129 5411 6.005198 AGACGTTTTCATATTTACCCCACAA 58.995 36.000 0.00 0.00 0.00 3.33
2147 5429 4.520492 CCACAAATGGGTTCTATATGGAGC 59.480 45.833 0.00 0.00 43.04 4.70
2152 5434 1.338200 GGGTTCTATATGGAGCTGGCG 60.338 57.143 0.00 0.00 0.00 5.69
2210 5492 4.143052 CCGGTTAGGTAACATTTTCGTGAC 60.143 45.833 0.00 0.00 37.92 3.67
2218 5500 0.240945 CATTTTCGTGACCAGGCCAC 59.759 55.000 5.01 0.00 0.00 5.01
2220 5502 1.990160 TTTTCGTGACCAGGCCACCT 61.990 55.000 5.01 0.00 0.00 4.00
2277 5559 8.361169 AGGAAGGTCTTATATAGATGCTCTTC 57.639 38.462 0.00 0.00 34.79 2.87
2291 5573 6.635755 AGATGCTCTTCTTTTCTACTGTACC 58.364 40.000 0.00 0.00 0.00 3.34
2314 5596 3.028130 GGAAGGAAAACACTCCAAACCA 58.972 45.455 0.00 0.00 38.02 3.67
2329 5611 4.006989 CCAAACCACCGAATGACTGAATA 58.993 43.478 0.00 0.00 0.00 1.75
2331 5613 5.220854 CCAAACCACCGAATGACTGAATATC 60.221 44.000 0.00 0.00 0.00 1.63
2343 5625 6.231258 TGACTGAATATCTGCTCATGAGTT 57.769 37.500 23.38 9.02 0.00 3.01
2346 5628 6.047870 ACTGAATATCTGCTCATGAGTTGTC 58.952 40.000 23.38 7.78 0.00 3.18
2359 5641 4.060038 TGAGTTGTCTCAGGAACTTGTC 57.940 45.455 0.00 0.00 44.58 3.18
2405 5687 1.202817 TCAGCGTTGTTAGCCGACATA 59.797 47.619 0.00 0.00 34.64 2.29
2443 5725 4.213482 AGCACCTTGTTTTATCAAGTCGAC 59.787 41.667 7.70 7.70 42.01 4.20
2469 5751 4.083802 GCCATATCCATTAGCAGAAACGAC 60.084 45.833 0.00 0.00 0.00 4.34
2481 5763 0.316204 GAAACGACTTCTGGACCGGA 59.684 55.000 9.46 0.00 0.00 5.14
2500 5782 1.804326 TCGCGAGCGAAAGTAAGGC 60.804 57.895 18.25 0.00 46.01 4.35
2502 5784 1.352156 CGCGAGCGAAAGTAAGGCTT 61.352 55.000 12.58 4.58 42.83 4.35
2517 5799 3.136123 CTTGGATGCAGGCGGGTG 61.136 66.667 0.00 0.00 0.00 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 0.603065 TCTGTCCATCGTCCACACTG 59.397 55.000 0.00 0.00 0.00 3.66
42 43 6.798476 CGTATATAATCATTTGCTGCTGGTTG 59.202 38.462 0.00 0.00 0.00 3.77
76 77 6.380274 ACGATAAGACAATTTACCTCTCCTCA 59.620 38.462 0.00 0.00 0.00 3.86
100 101 0.666274 TCGCGTGACCAGATGTGAAC 60.666 55.000 5.77 0.00 0.00 3.18
125 126 1.892209 AACTTCATTTCGCCCGACTT 58.108 45.000 0.00 0.00 0.00 3.01
127 128 2.287103 GGATAACTTCATTTCGCCCGAC 59.713 50.000 0.00 0.00 0.00 4.79
128 129 2.169769 AGGATAACTTCATTTCGCCCGA 59.830 45.455 0.00 0.00 0.00 5.14
129 130 2.287915 CAGGATAACTTCATTTCGCCCG 59.712 50.000 0.00 0.00 0.00 6.13
130 131 3.541632 TCAGGATAACTTCATTTCGCCC 58.458 45.455 0.00 0.00 0.00 6.13
131 132 5.066505 ACATTCAGGATAACTTCATTTCGCC 59.933 40.000 0.00 0.00 0.00 5.54
132 133 5.967674 CACATTCAGGATAACTTCATTTCGC 59.032 40.000 0.00 0.00 0.00 4.70
133 134 5.967674 GCACATTCAGGATAACTTCATTTCG 59.032 40.000 0.00 0.00 0.00 3.46
134 135 6.971184 CAGCACATTCAGGATAACTTCATTTC 59.029 38.462 0.00 0.00 0.00 2.17
135 136 6.127535 CCAGCACATTCAGGATAACTTCATTT 60.128 38.462 0.00 0.00 0.00 2.32
136 137 5.359009 CCAGCACATTCAGGATAACTTCATT 59.641 40.000 0.00 0.00 0.00 2.57
138 139 4.264253 CCAGCACATTCAGGATAACTTCA 58.736 43.478 0.00 0.00 0.00 3.02
139 140 3.065925 GCCAGCACATTCAGGATAACTTC 59.934 47.826 0.00 0.00 0.00 3.01
140 141 3.019564 GCCAGCACATTCAGGATAACTT 58.980 45.455 0.00 0.00 0.00 2.66
141 142 2.240667 AGCCAGCACATTCAGGATAACT 59.759 45.455 0.00 0.00 0.00 2.24
142 143 2.648059 AGCCAGCACATTCAGGATAAC 58.352 47.619 0.00 0.00 0.00 1.89
143 144 3.018856 CAAGCCAGCACATTCAGGATAA 58.981 45.455 0.00 0.00 0.00 1.75
144 145 2.646930 CAAGCCAGCACATTCAGGATA 58.353 47.619 0.00 0.00 0.00 2.59
145 146 1.471119 CAAGCCAGCACATTCAGGAT 58.529 50.000 0.00 0.00 0.00 3.24
146 147 0.609957 CCAAGCCAGCACATTCAGGA 60.610 55.000 0.00 0.00 0.00 3.86
147 148 1.601419 CCCAAGCCAGCACATTCAGG 61.601 60.000 0.00 0.00 0.00 3.86
186 187 2.322355 ATCTCTGTCCAAATCCGCTG 57.678 50.000 0.00 0.00 0.00 5.18
190 191 5.119694 GTCACCTAATCTCTGTCCAAATCC 58.880 45.833 0.00 0.00 0.00 3.01
191 192 5.734720 TGTCACCTAATCTCTGTCCAAATC 58.265 41.667 0.00 0.00 0.00 2.17
192 193 5.762179 TGTCACCTAATCTCTGTCCAAAT 57.238 39.130 0.00 0.00 0.00 2.32
193 194 5.491070 CATGTCACCTAATCTCTGTCCAAA 58.509 41.667 0.00 0.00 0.00 3.28
194 195 4.623886 GCATGTCACCTAATCTCTGTCCAA 60.624 45.833 0.00 0.00 0.00 3.53
195 196 3.118629 GCATGTCACCTAATCTCTGTCCA 60.119 47.826 0.00 0.00 0.00 4.02
196 197 3.118629 TGCATGTCACCTAATCTCTGTCC 60.119 47.826 0.00 0.00 0.00 4.02
197 198 4.128925 TGCATGTCACCTAATCTCTGTC 57.871 45.455 0.00 0.00 0.00 3.51
198 199 4.408270 AGATGCATGTCACCTAATCTCTGT 59.592 41.667 2.46 0.00 0.00 3.41
199 200 4.958509 AGATGCATGTCACCTAATCTCTG 58.041 43.478 2.46 0.00 0.00 3.35
200 201 5.627182 AAGATGCATGTCACCTAATCTCT 57.373 39.130 2.46 0.00 0.00 3.10
201 202 7.976135 ATAAAGATGCATGTCACCTAATCTC 57.024 36.000 2.46 0.00 0.00 2.75
202 203 9.445878 CATATAAAGATGCATGTCACCTAATCT 57.554 33.333 2.46 0.00 0.00 2.40
203 204 9.224267 ACATATAAAGATGCATGTCACCTAATC 57.776 33.333 2.46 0.00 0.00 1.75
204 205 9.224267 GACATATAAAGATGCATGTCACCTAAT 57.776 33.333 2.46 0.00 44.27 1.73
205 206 8.607441 GACATATAAAGATGCATGTCACCTAA 57.393 34.615 2.46 0.00 44.27 2.69
211 212 5.466728 ACGGTGACATATAAAGATGCATGTC 59.533 40.000 2.46 4.73 44.82 3.06
212 213 5.237127 CACGGTGACATATAAAGATGCATGT 59.763 40.000 2.46 0.00 34.41 3.21
213 214 5.237127 ACACGGTGACATATAAAGATGCATG 59.763 40.000 16.29 0.00 0.00 4.06
214 215 5.237127 CACACGGTGACATATAAAGATGCAT 59.763 40.000 16.29 0.00 35.23 3.96
215 216 4.570369 CACACGGTGACATATAAAGATGCA 59.430 41.667 16.29 0.00 35.23 3.96
216 217 4.808895 TCACACGGTGACATATAAAGATGC 59.191 41.667 16.29 0.00 37.67 3.91
229 230 2.279851 CCGCAAGTCACACGGTGA 60.280 61.111 16.29 0.00 42.01 4.02
233 234 1.225376 TTTAGGCCGCAAGTCACACG 61.225 55.000 0.00 0.00 0.00 4.49
234 235 1.165270 ATTTAGGCCGCAAGTCACAC 58.835 50.000 0.00 0.00 0.00 3.82
235 236 1.904287 AATTTAGGCCGCAAGTCACA 58.096 45.000 0.00 0.00 0.00 3.58
236 237 4.632538 ATAAATTTAGGCCGCAAGTCAC 57.367 40.909 3.94 0.00 0.00 3.67
237 238 6.952773 AATATAAATTTAGGCCGCAAGTCA 57.047 33.333 3.94 0.00 0.00 3.41
238 239 9.738832 TTTAAATATAAATTTAGGCCGCAAGTC 57.261 29.630 3.94 0.00 38.48 3.01
239 240 9.524106 GTTTAAATATAAATTTAGGCCGCAAGT 57.476 29.630 3.94 0.00 38.48 3.16
240 241 9.522804 TGTTTAAATATAAATTTAGGCCGCAAG 57.477 29.630 3.94 0.00 38.48 4.01
329 330 9.559958 GTGTATGTTTCGAATTTTGATCTGAAT 57.440 29.630 0.00 0.00 0.00 2.57
330 331 8.020819 GGTGTATGTTTCGAATTTTGATCTGAA 58.979 33.333 0.00 0.00 0.00 3.02
331 332 7.174080 TGGTGTATGTTTCGAATTTTGATCTGA 59.826 33.333 0.00 0.00 0.00 3.27
332 333 7.304735 TGGTGTATGTTTCGAATTTTGATCTG 58.695 34.615 0.00 0.00 0.00 2.90
333 334 7.447374 TGGTGTATGTTTCGAATTTTGATCT 57.553 32.000 0.00 0.00 0.00 2.75
334 335 8.020819 TCTTGGTGTATGTTTCGAATTTTGATC 58.979 33.333 0.00 0.00 0.00 2.92
335 336 7.881142 TCTTGGTGTATGTTTCGAATTTTGAT 58.119 30.769 0.00 0.00 0.00 2.57
336 337 7.265647 TCTTGGTGTATGTTTCGAATTTTGA 57.734 32.000 0.00 0.00 0.00 2.69
337 338 7.922505 TTCTTGGTGTATGTTTCGAATTTTG 57.077 32.000 0.00 0.00 0.00 2.44
338 339 7.976734 TGTTTCTTGGTGTATGTTTCGAATTTT 59.023 29.630 0.00 0.00 0.00 1.82
339 340 7.484975 TGTTTCTTGGTGTATGTTTCGAATTT 58.515 30.769 0.00 0.00 0.00 1.82
340 341 7.033530 TGTTTCTTGGTGTATGTTTCGAATT 57.966 32.000 0.00 0.00 0.00 2.17
341 342 6.627395 TGTTTCTTGGTGTATGTTTCGAAT 57.373 33.333 0.00 0.00 0.00 3.34
342 343 6.438259 TTGTTTCTTGGTGTATGTTTCGAA 57.562 33.333 0.00 0.00 0.00 3.71
343 344 6.438259 TTTGTTTCTTGGTGTATGTTTCGA 57.562 33.333 0.00 0.00 0.00 3.71
344 345 7.513190 TTTTTGTTTCTTGGTGTATGTTTCG 57.487 32.000 0.00 0.00 0.00 3.46
383 384 9.988815 GTGAATGGTTCTCTGTATACTATTCAT 57.011 33.333 13.67 0.00 45.26 2.57
384 385 8.977412 TGTGAATGGTTCTCTGTATACTATTCA 58.023 33.333 4.17 8.53 43.14 2.57
385 386 9.817809 TTGTGAATGGTTCTCTGTATACTATTC 57.182 33.333 4.17 0.00 39.07 1.75
386 387 9.601217 GTTGTGAATGGTTCTCTGTATACTATT 57.399 33.333 4.17 0.00 0.00 1.73
387 388 8.982723 AGTTGTGAATGGTTCTCTGTATACTAT 58.017 33.333 4.17 0.00 0.00 2.12
388 389 8.362464 AGTTGTGAATGGTTCTCTGTATACTA 57.638 34.615 4.17 0.00 0.00 1.82
389 390 7.246171 AGTTGTGAATGGTTCTCTGTATACT 57.754 36.000 4.17 0.00 0.00 2.12
390 391 9.601217 AATAGTTGTGAATGGTTCTCTGTATAC 57.399 33.333 0.00 0.00 0.00 1.47
391 392 9.817809 GAATAGTTGTGAATGGTTCTCTGTATA 57.182 33.333 0.00 0.00 0.00 1.47
392 393 8.321353 TGAATAGTTGTGAATGGTTCTCTGTAT 58.679 33.333 0.00 0.00 0.00 2.29
393 394 7.676004 TGAATAGTTGTGAATGGTTCTCTGTA 58.324 34.615 0.00 0.00 0.00 2.74
394 395 6.533730 TGAATAGTTGTGAATGGTTCTCTGT 58.466 36.000 0.00 0.00 0.00 3.41
395 396 7.621428 ATGAATAGTTGTGAATGGTTCTCTG 57.379 36.000 0.00 0.00 0.00 3.35
396 397 9.167311 GTTATGAATAGTTGTGAATGGTTCTCT 57.833 33.333 0.00 0.00 0.00 3.10
397 398 8.946085 TGTTATGAATAGTTGTGAATGGTTCTC 58.054 33.333 0.00 0.00 0.00 2.87
398 399 8.862325 TGTTATGAATAGTTGTGAATGGTTCT 57.138 30.769 0.00 0.00 0.00 3.01
399 400 8.946085 TCTGTTATGAATAGTTGTGAATGGTTC 58.054 33.333 0.00 0.00 0.00 3.62
400 401 8.862325 TCTGTTATGAATAGTTGTGAATGGTT 57.138 30.769 0.00 0.00 0.00 3.67
401 402 9.466497 AATCTGTTATGAATAGTTGTGAATGGT 57.534 29.630 0.00 0.00 0.00 3.55
433 434 7.421599 TCGAAACATACATCAAGAAGCAAAAA 58.578 30.769 0.00 0.00 0.00 1.94
434 435 6.964908 TCGAAACATACATCAAGAAGCAAAA 58.035 32.000 0.00 0.00 0.00 2.44
435 436 6.552859 TCGAAACATACATCAAGAAGCAAA 57.447 33.333 0.00 0.00 0.00 3.68
436 437 6.552859 TTCGAAACATACATCAAGAAGCAA 57.447 33.333 0.00 0.00 0.00 3.91
437 438 6.741992 ATTCGAAACATACATCAAGAAGCA 57.258 33.333 0.00 0.00 0.00 3.91
438 439 8.368126 CAAAATTCGAAACATACATCAAGAAGC 58.632 33.333 0.00 0.00 0.00 3.86
439 440 9.611284 TCAAAATTCGAAACATACATCAAGAAG 57.389 29.630 0.00 0.00 0.00 2.85
441 442 9.773328 GATCAAAATTCGAAACATACATCAAGA 57.227 29.630 0.00 0.00 0.00 3.02
442 443 9.778993 AGATCAAAATTCGAAACATACATCAAG 57.221 29.630 0.00 0.00 0.00 3.02
443 444 9.558648 CAGATCAAAATTCGAAACATACATCAA 57.441 29.630 0.00 0.00 0.00 2.57
444 445 8.945057 TCAGATCAAAATTCGAAACATACATCA 58.055 29.630 0.00 0.00 0.00 3.07
445 446 9.941664 ATCAGATCAAAATTCGAAACATACATC 57.058 29.630 0.00 0.31 0.00 3.06
483 484 9.723601 TGCATGTTCATAGCACATATTAAGATA 57.276 29.630 0.00 0.00 32.88 1.98
484 485 8.625786 TGCATGTTCATAGCACATATTAAGAT 57.374 30.769 0.00 0.00 32.88 2.40
485 486 8.508875 CATGCATGTTCATAGCACATATTAAGA 58.491 33.333 18.91 0.00 41.60 2.10
486 487 8.508875 TCATGCATGTTCATAGCACATATTAAG 58.491 33.333 25.43 0.00 41.60 1.85
487 488 8.393671 TCATGCATGTTCATAGCACATATTAA 57.606 30.769 25.43 0.00 41.60 1.40
488 489 7.982761 TCATGCATGTTCATAGCACATATTA 57.017 32.000 25.43 0.00 41.60 0.98
489 490 6.887626 TCATGCATGTTCATAGCACATATT 57.112 33.333 25.43 0.00 41.60 1.28
490 491 7.462571 AATCATGCATGTTCATAGCACATAT 57.537 32.000 25.43 4.81 41.60 1.78
491 492 6.887626 AATCATGCATGTTCATAGCACATA 57.112 33.333 25.43 2.45 41.60 2.29
492 493 5.784578 AATCATGCATGTTCATAGCACAT 57.215 34.783 25.43 5.53 41.60 3.21
493 494 5.585820 AAATCATGCATGTTCATAGCACA 57.414 34.783 25.43 3.20 41.60 4.57
494 495 6.897259 AAAAATCATGCATGTTCATAGCAC 57.103 33.333 25.43 0.00 41.60 4.40
529 530 9.606631 GGCCCAAATTCATATTTAAACATTGTA 57.393 29.630 0.00 0.00 32.75 2.41
530 531 7.279758 CGGCCCAAATTCATATTTAAACATTGT 59.720 33.333 0.00 0.00 32.75 2.71
531 532 7.629130 CGGCCCAAATTCATATTTAAACATTG 58.371 34.615 0.00 0.00 32.75 2.82
532 533 6.259829 GCGGCCCAAATTCATATTTAAACATT 59.740 34.615 0.00 0.00 32.75 2.71
533 534 5.757808 GCGGCCCAAATTCATATTTAAACAT 59.242 36.000 0.00 0.00 32.75 2.71
534 535 5.112686 GCGGCCCAAATTCATATTTAAACA 58.887 37.500 0.00 0.00 32.75 2.83
535 536 5.112686 TGCGGCCCAAATTCATATTTAAAC 58.887 37.500 0.00 0.00 32.75 2.01
536 537 5.344743 TGCGGCCCAAATTCATATTTAAA 57.655 34.783 0.00 0.00 32.75 1.52
537 538 5.105146 ACTTGCGGCCCAAATTCATATTTAA 60.105 36.000 0.00 0.00 32.75 1.52
538 539 4.404073 ACTTGCGGCCCAAATTCATATTTA 59.596 37.500 0.00 0.00 32.75 1.40
539 540 3.197549 ACTTGCGGCCCAAATTCATATTT 59.802 39.130 0.00 0.00 34.29 1.40
540 541 2.765699 ACTTGCGGCCCAAATTCATATT 59.234 40.909 0.00 0.00 31.94 1.28
541 542 2.362077 GACTTGCGGCCCAAATTCATAT 59.638 45.455 0.00 0.00 31.94 1.78
542 543 1.748493 GACTTGCGGCCCAAATTCATA 59.252 47.619 0.00 0.00 31.94 2.15
543 544 0.532115 GACTTGCGGCCCAAATTCAT 59.468 50.000 0.00 0.00 31.94 2.57
544 545 0.825425 TGACTTGCGGCCCAAATTCA 60.825 50.000 0.00 5.62 31.94 2.57
545 546 0.388520 GTGACTTGCGGCCCAAATTC 60.389 55.000 0.00 3.10 31.94 2.17
546 547 1.112315 TGTGACTTGCGGCCCAAATT 61.112 50.000 0.00 0.00 31.94 1.82
547 548 0.899717 ATGTGACTTGCGGCCCAAAT 60.900 50.000 0.00 0.00 31.94 2.32
548 549 1.530419 ATGTGACTTGCGGCCCAAA 60.530 52.632 0.00 0.00 31.94 3.28
549 550 2.115052 ATGTGACTTGCGGCCCAA 59.885 55.556 0.00 1.31 0.00 4.12
550 551 2.672651 CATGTGACTTGCGGCCCA 60.673 61.111 0.00 0.00 0.00 5.36
551 552 3.443045 CCATGTGACTTGCGGCCC 61.443 66.667 0.00 0.00 0.00 5.80
552 553 2.672996 ACCATGTGACTTGCGGCC 60.673 61.111 0.00 0.00 0.00 6.13
553 554 1.965930 TCACCATGTGACTTGCGGC 60.966 57.895 0.00 0.00 37.67 6.53
554 555 4.377370 TCACCATGTGACTTGCGG 57.623 55.556 0.00 0.00 37.67 5.69
581 582 0.254178 AGGGATCAGGTGACATGCAC 59.746 55.000 10.63 10.63 46.98 4.57
582 583 0.253894 CAGGGATCAGGTGACATGCA 59.746 55.000 0.00 0.00 0.00 3.96
583 584 0.254178 ACAGGGATCAGGTGACATGC 59.746 55.000 0.00 0.00 0.00 4.06
584 585 1.134280 GGACAGGGATCAGGTGACATG 60.134 57.143 0.00 0.00 0.00 3.21
585 586 1.207791 GGACAGGGATCAGGTGACAT 58.792 55.000 0.00 0.00 0.00 3.06
586 587 0.178906 TGGACAGGGATCAGGTGACA 60.179 55.000 0.00 0.00 0.00 3.58
587 588 0.539051 CTGGACAGGGATCAGGTGAC 59.461 60.000 0.00 0.00 0.00 3.67
588 589 1.267574 GCTGGACAGGGATCAGGTGA 61.268 60.000 1.01 0.00 0.00 4.02
589 590 1.222936 GCTGGACAGGGATCAGGTG 59.777 63.158 1.01 0.00 0.00 4.00
590 591 2.362369 CGCTGGACAGGGATCAGGT 61.362 63.158 10.50 0.00 43.22 4.00
591 592 2.503061 CGCTGGACAGGGATCAGG 59.497 66.667 10.50 0.00 43.22 3.86
592 593 1.406065 ATCCGCTGGACAGGGATCAG 61.406 60.000 16.77 1.68 43.22 2.90
593 594 0.982852 AATCCGCTGGACAGGGATCA 60.983 55.000 16.77 2.28 43.22 2.92
594 595 0.181350 AAATCCGCTGGACAGGGATC 59.819 55.000 16.77 0.00 43.22 3.36
595 596 0.107017 CAAATCCGCTGGACAGGGAT 60.107 55.000 16.77 14.79 43.22 3.85
596 597 1.299648 CAAATCCGCTGGACAGGGA 59.700 57.895 16.77 13.35 43.22 4.20
597 598 1.750399 CCAAATCCGCTGGACAGGG 60.750 63.158 9.19 9.19 40.61 4.45
598 599 2.409870 GCCAAATCCGCTGGACAGG 61.410 63.158 1.01 4.07 35.85 4.00
599 600 2.409870 GGCCAAATCCGCTGGACAG 61.410 63.158 0.00 0.00 42.14 3.51
600 601 2.361104 GGCCAAATCCGCTGGACA 60.361 61.111 0.00 0.00 42.14 4.02
601 602 2.044946 AGGCCAAATCCGCTGGAC 60.045 61.111 5.01 0.00 43.00 4.02
602 603 2.045045 CAGGCCAAATCCGCTGGA 60.045 61.111 5.01 0.00 35.85 3.86
603 604 1.937546 GAACAGGCCAAATCCGCTGG 61.938 60.000 5.01 0.00 36.99 4.85
604 605 1.243342 TGAACAGGCCAAATCCGCTG 61.243 55.000 5.01 0.00 0.00 5.18
605 606 0.539438 TTGAACAGGCCAAATCCGCT 60.539 50.000 5.01 0.00 0.00 5.52
606 607 0.316841 TTTGAACAGGCCAAATCCGC 59.683 50.000 5.01 0.00 0.00 5.54
607 608 3.317603 AATTTGAACAGGCCAAATCCG 57.682 42.857 5.01 0.00 41.71 4.18
608 609 4.002982 GGAAATTTGAACAGGCCAAATCC 58.997 43.478 5.01 0.00 41.71 3.01
609 610 4.898320 AGGAAATTTGAACAGGCCAAATC 58.102 39.130 5.01 0.00 41.71 2.17
643 644 4.358851 CAAAACATCTTTGCTTCGGTTCA 58.641 39.130 0.00 0.00 0.00 3.18
644 645 4.954238 CAAAACATCTTTGCTTCGGTTC 57.046 40.909 0.00 0.00 0.00 3.62
653 654 4.053295 CCTGACAAGGCAAAACATCTTTG 58.947 43.478 0.00 0.00 36.56 2.77
654 655 3.960102 TCCTGACAAGGCAAAACATCTTT 59.040 39.130 0.00 0.00 44.11 2.52
658 670 2.624838 CTGTCCTGACAAGGCAAAACAT 59.375 45.455 1.14 0.00 44.11 2.71
666 678 1.202533 ACAACGACTGTCCTGACAAGG 60.203 52.381 10.54 0.00 46.06 3.61
686 698 9.374838 GCTATAGCCGGCTATTTAAAACTATAA 57.625 33.333 44.65 25.48 39.65 0.98
687 699 8.937634 GCTATAGCCGGCTATTTAAAACTATA 57.062 34.615 44.65 25.94 39.65 1.31
688 700 7.845066 GCTATAGCCGGCTATTTAAAACTAT 57.155 36.000 44.65 26.21 39.65 2.12
709 721 2.956333 TCAAACAGCTATAGCGAGGCTA 59.044 45.455 18.82 0.00 45.55 3.93
716 728 3.268023 ACACCCTCAAACAGCTATAGC 57.732 47.619 17.33 17.33 42.49 2.97
717 729 3.375299 GCAACACCCTCAAACAGCTATAG 59.625 47.826 0.00 0.00 0.00 1.31
718 730 3.343617 GCAACACCCTCAAACAGCTATA 58.656 45.455 0.00 0.00 0.00 1.31
719 731 2.162681 GCAACACCCTCAAACAGCTAT 58.837 47.619 0.00 0.00 0.00 2.97
720 732 1.604604 GCAACACCCTCAAACAGCTA 58.395 50.000 0.00 0.00 0.00 3.32
721 733 1.109323 GGCAACACCCTCAAACAGCT 61.109 55.000 0.00 0.00 0.00 4.24
722 734 1.363807 GGCAACACCCTCAAACAGC 59.636 57.895 0.00 0.00 0.00 4.40
723 735 1.654220 CGGCAACACCCTCAAACAG 59.346 57.895 0.00 0.00 33.26 3.16
724 736 2.485795 GCGGCAACACCCTCAAACA 61.486 57.895 0.00 0.00 33.26 2.83
725 737 0.887387 TAGCGGCAACACCCTCAAAC 60.887 55.000 1.45 0.00 33.26 2.93
726 738 0.179015 TTAGCGGCAACACCCTCAAA 60.179 50.000 1.45 0.00 33.26 2.69
727 739 0.179015 TTTAGCGGCAACACCCTCAA 60.179 50.000 1.45 0.00 33.26 3.02
728 740 0.037590 ATTTAGCGGCAACACCCTCA 59.962 50.000 1.45 0.00 33.26 3.86
729 741 0.451783 CATTTAGCGGCAACACCCTC 59.548 55.000 1.45 0.00 33.26 4.30
730 742 0.037590 TCATTTAGCGGCAACACCCT 59.962 50.000 1.45 0.00 33.26 4.34
731 743 1.102978 ATCATTTAGCGGCAACACCC 58.897 50.000 1.45 0.00 33.26 4.61
732 744 2.939460 AATCATTTAGCGGCAACACC 57.061 45.000 1.45 0.00 0.00 4.16
733 745 3.832276 TGAAATCATTTAGCGGCAACAC 58.168 40.909 1.45 0.00 0.00 3.32
734 746 4.082300 ACATGAAATCATTTAGCGGCAACA 60.082 37.500 0.00 0.00 33.61 3.33
735 747 4.423732 ACATGAAATCATTTAGCGGCAAC 58.576 39.130 0.00 0.00 33.61 4.17
736 748 4.717233 ACATGAAATCATTTAGCGGCAA 57.283 36.364 0.00 0.00 33.61 4.52
737 749 4.637977 TGTACATGAAATCATTTAGCGGCA 59.362 37.500 0.00 0.00 33.61 5.69
738 750 5.168526 TGTACATGAAATCATTTAGCGGC 57.831 39.130 0.00 0.00 33.61 6.53
739 751 8.533965 CAAATTGTACATGAAATCATTTAGCGG 58.466 33.333 0.00 0.00 33.61 5.52
740 752 8.051909 GCAAATTGTACATGAAATCATTTAGCG 58.948 33.333 0.00 0.00 33.61 4.26
741 753 8.330302 GGCAAATTGTACATGAAATCATTTAGC 58.670 33.333 0.00 4.99 33.61 3.09
742 754 8.533965 CGGCAAATTGTACATGAAATCATTTAG 58.466 33.333 0.00 0.00 33.61 1.85
743 755 7.009999 GCGGCAAATTGTACATGAAATCATTTA 59.990 33.333 0.00 0.00 33.61 1.40
744 756 6.183360 GCGGCAAATTGTACATGAAATCATTT 60.183 34.615 0.00 0.00 33.61 2.32
745 757 5.291614 GCGGCAAATTGTACATGAAATCATT 59.708 36.000 0.00 0.00 33.61 2.57
746 758 4.805192 GCGGCAAATTGTACATGAAATCAT 59.195 37.500 0.00 0.00 36.96 2.45
747 759 4.082300 AGCGGCAAATTGTACATGAAATCA 60.082 37.500 0.00 0.00 0.00 2.57
748 760 4.423732 AGCGGCAAATTGTACATGAAATC 58.576 39.130 0.00 0.00 0.00 2.17
749 761 4.454728 AGCGGCAAATTGTACATGAAAT 57.545 36.364 0.00 0.00 0.00 2.17
750 762 3.932545 AGCGGCAAATTGTACATGAAA 57.067 38.095 0.00 0.00 0.00 2.69
751 763 5.277779 GCTATAGCGGCAAATTGTACATGAA 60.278 40.000 9.40 0.00 0.00 2.57
752 764 4.213270 GCTATAGCGGCAAATTGTACATGA 59.787 41.667 9.40 0.00 0.00 3.07
753 765 4.466828 GCTATAGCGGCAAATTGTACATG 58.533 43.478 9.40 0.00 0.00 3.21
754 766 4.749245 GCTATAGCGGCAAATTGTACAT 57.251 40.909 9.40 0.00 0.00 2.29
790 802 4.260661 GCGACCCTTAAAAACAGCTATAGC 60.261 45.833 17.33 17.33 42.49 2.97
791 803 4.272748 GGCGACCCTTAAAAACAGCTATAG 59.727 45.833 0.00 0.00 0.00 1.31
792 804 4.193865 GGCGACCCTTAAAAACAGCTATA 58.806 43.478 0.00 0.00 0.00 1.31
793 805 3.014623 GGCGACCCTTAAAAACAGCTAT 58.985 45.455 0.00 0.00 0.00 2.97
794 806 2.429478 GGCGACCCTTAAAAACAGCTA 58.571 47.619 0.00 0.00 0.00 3.32
795 807 1.244816 GGCGACCCTTAAAAACAGCT 58.755 50.000 0.00 0.00 0.00 4.24
796 808 0.109919 CGGCGACCCTTAAAAACAGC 60.110 55.000 0.00 0.00 0.00 4.40
797 809 0.109919 GCGGCGACCCTTAAAAACAG 60.110 55.000 12.98 0.00 0.00 3.16
798 810 0.535553 AGCGGCGACCCTTAAAAACA 60.536 50.000 12.98 0.00 0.00 2.83
799 811 1.441738 TAGCGGCGACCCTTAAAAAC 58.558 50.000 12.98 0.00 0.00 2.43
800 812 2.181954 TTAGCGGCGACCCTTAAAAA 57.818 45.000 12.98 0.00 0.00 1.94
801 813 2.181954 TTTAGCGGCGACCCTTAAAA 57.818 45.000 12.98 0.00 0.00 1.52
802 814 2.011222 CATTTAGCGGCGACCCTTAAA 58.989 47.619 12.98 7.21 0.00 1.52
803 815 1.658994 CATTTAGCGGCGACCCTTAA 58.341 50.000 12.98 0.00 0.00 1.85
804 816 0.812412 GCATTTAGCGGCGACCCTTA 60.812 55.000 12.98 0.00 0.00 2.69
805 817 2.112815 GCATTTAGCGGCGACCCTT 61.113 57.895 12.98 0.00 0.00 3.95
806 818 2.513897 GCATTTAGCGGCGACCCT 60.514 61.111 12.98 0.00 0.00 4.34
815 827 0.890996 AGCGGGCTATGGCATTTAGC 60.891 55.000 12.79 12.79 41.08 3.09
816 828 2.472695 TAGCGGGCTATGGCATTTAG 57.527 50.000 4.78 0.00 40.87 1.85
817 829 3.433306 AATAGCGGGCTATGGCATTTA 57.567 42.857 13.53 0.00 39.03 1.40
818 830 2.292828 AATAGCGGGCTATGGCATTT 57.707 45.000 13.53 0.00 39.03 2.32
819 831 2.292828 AAATAGCGGGCTATGGCATT 57.707 45.000 13.53 2.26 39.03 3.56
820 832 3.433306 TTAAATAGCGGGCTATGGCAT 57.567 42.857 13.53 4.88 39.03 4.40
821 833 2.940994 TTAAATAGCGGGCTATGGCA 57.059 45.000 13.53 0.00 39.03 4.92
822 834 4.783764 ATTTTAAATAGCGGGCTATGGC 57.216 40.909 13.53 0.00 39.03 4.40
823 835 7.093945 ACCAATATTTTAAATAGCGGGCTATGG 60.094 37.037 13.53 10.17 39.03 2.74
824 836 7.826690 ACCAATATTTTAAATAGCGGGCTATG 58.173 34.615 13.53 0.00 39.03 2.23
825 837 7.148306 CGACCAATATTTTAAATAGCGGGCTAT 60.148 37.037 14.97 7.36 40.63 2.97
826 838 6.148150 CGACCAATATTTTAAATAGCGGGCTA 59.852 38.462 14.97 2.42 0.00 3.93
827 839 5.048991 CGACCAATATTTTAAATAGCGGGCT 60.049 40.000 14.97 0.00 0.00 5.19
828 840 5.151389 CGACCAATATTTTAAATAGCGGGC 58.849 41.667 15.26 12.62 0.00 6.13
829 841 6.308371 ACGACCAATATTTTAAATAGCGGG 57.692 37.500 15.26 12.27 0.00 6.13
830 842 6.141685 GCAACGACCAATATTTTAAATAGCGG 59.858 38.462 11.40 11.40 0.00 5.52
831 843 6.689241 TGCAACGACCAATATTTTAAATAGCG 59.311 34.615 3.73 4.93 0.00 4.26
832 844 7.827619 GTGCAACGACCAATATTTTAAATAGC 58.172 34.615 3.73 0.00 0.00 2.97
889 901 0.103390 TGTGTGTACTGTGTGGACGG 59.897 55.000 0.00 0.00 34.25 4.79
934 946 3.400054 CCCCGACTCCTGGAACCC 61.400 72.222 0.00 0.00 0.00 4.11
935 947 2.606826 ACCCCGACTCCTGGAACC 60.607 66.667 0.00 0.00 0.00 3.62
937 949 1.157751 AAGACCCCGACTCCTGGAA 59.842 57.895 0.00 0.00 0.00 3.53
938 950 1.609501 CAAGACCCCGACTCCTGGA 60.610 63.158 0.00 0.00 0.00 3.86
941 953 1.305381 CCTCAAGACCCCGACTCCT 60.305 63.158 0.00 0.00 0.00 3.69
942 954 1.192803 AACCTCAAGACCCCGACTCC 61.193 60.000 0.00 0.00 0.00 3.85
1057 3413 1.817099 CTTGCCCACAGGATCGAGC 60.817 63.158 0.00 0.00 33.47 5.03
1059 3415 0.904865 AGACTTGCCCACAGGATCGA 60.905 55.000 0.00 0.00 33.47 3.59
1060 3416 0.036010 AAGACTTGCCCACAGGATCG 60.036 55.000 0.00 0.00 33.47 3.69
1061 3417 1.280421 AGAAGACTTGCCCACAGGATC 59.720 52.381 0.00 0.00 33.47 3.36
1062 3418 1.280421 GAGAAGACTTGCCCACAGGAT 59.720 52.381 0.00 0.00 33.47 3.24
1128 3484 2.434134 CGGACTTTCTCGCGTTCGG 61.434 63.158 5.77 0.00 36.13 4.30
1131 3487 1.728426 CGACGGACTTTCTCGCGTT 60.728 57.895 5.77 0.00 0.00 4.84
1299 3658 4.626081 ACCTGGACGGTGCAGTGC 62.626 66.667 24.98 8.58 46.80 4.40
1329 3688 0.603569 TCGGGCTCAGAGACAGAAAC 59.396 55.000 3.17 0.00 0.00 2.78
1331 3690 1.599606 GCTCGGGCTCAGAGACAGAA 61.600 60.000 7.60 0.00 37.93 3.02
1332 3691 2.049185 GCTCGGGCTCAGAGACAGA 61.049 63.158 5.38 5.67 37.93 3.41
1334 3693 2.283173 TGCTCGGGCTCAGAGACA 60.283 61.111 9.62 4.63 37.93 3.41
1340 3699 2.601666 ACTGACTGCTCGGGCTCA 60.602 61.111 9.62 3.47 39.59 4.26
1351 3710 1.539929 GCAGACACAAGCTGACTGACT 60.540 52.381 7.83 0.00 43.14 3.41
1360 3719 1.610522 ACATGGAAAGCAGACACAAGC 59.389 47.619 0.00 0.00 0.00 4.01
1375 3734 0.796312 GTACTGTCGGCACAACATGG 59.204 55.000 0.00 0.00 29.82 3.66
1395 3758 1.865865 CCACTGTGATACGGCATACC 58.134 55.000 9.86 0.00 0.00 2.73
1400 3763 2.452813 CGTGCCACTGTGATACGGC 61.453 63.158 21.04 12.32 45.11 5.68
1403 3766 1.933853 GGAATCGTGCCACTGTGATAC 59.066 52.381 9.86 6.83 0.00 2.24
1405 3768 0.392998 GGGAATCGTGCCACTGTGAT 60.393 55.000 9.86 0.00 34.72 3.06
1428 3791 2.541999 GCAGCGTAGTCCAGATGTACTC 60.542 54.545 0.00 0.00 0.00 2.59
1449 3812 1.849097 GGTTACATCCTCTAACGGCG 58.151 55.000 4.80 4.80 0.00 6.46
1463 4737 1.362768 CCGTTTAGGGCTTCGGTTAC 58.637 55.000 0.00 0.00 38.45 2.50
1468 4742 1.017701 GGTCACCGTTTAGGGCTTCG 61.018 60.000 0.00 0.00 46.96 3.79
1518 4792 2.941453 TCACTGCTAATGACGGAGAC 57.059 50.000 0.00 0.00 0.00 3.36
1524 4798 3.232213 TCGGACTTCACTGCTAATGAC 57.768 47.619 0.00 0.00 0.00 3.06
1527 4801 6.093633 GGTTTATTTCGGACTTCACTGCTAAT 59.906 38.462 0.00 0.00 0.00 1.73
1529 4803 4.933400 GGTTTATTTCGGACTTCACTGCTA 59.067 41.667 0.00 0.00 0.00 3.49
1532 4806 5.941948 AAGGTTTATTTCGGACTTCACTG 57.058 39.130 0.00 0.00 0.00 3.66
1555 4829 2.224606 TCTGTCGAGGTGTACGAGTTT 58.775 47.619 0.00 0.00 40.37 2.66
1563 4837 3.007940 TGGATTTGATTCTGTCGAGGTGT 59.992 43.478 0.00 0.00 0.00 4.16
1565 4839 3.981071 TGGATTTGATTCTGTCGAGGT 57.019 42.857 0.00 0.00 0.00 3.85
1569 4843 4.359971 TTGCATGGATTTGATTCTGTCG 57.640 40.909 0.00 0.00 0.00 4.35
1573 4847 6.738731 GCATGAGATTGCATGGATTTGATTCT 60.739 38.462 0.00 0.00 44.47 2.40
1596 4878 1.398041 GCATGTTATCTCAGCGTTGCA 59.602 47.619 0.00 0.00 0.00 4.08
1620 4902 7.384115 TGTTGTGTGTTGAGCTAGTAGATAAAC 59.616 37.037 8.50 8.50 0.00 2.01
1633 4915 4.375272 AGTCTCTCATGTTGTGTGTTGAG 58.625 43.478 0.00 0.00 37.52 3.02
1663 4945 2.886862 TTTTTGGTAGTCCGACGACA 57.113 45.000 13.03 2.09 41.87 4.35
1664 4946 2.343544 CGATTTTTGGTAGTCCGACGAC 59.656 50.000 3.33 3.33 39.50 4.34
1665 4947 2.228582 TCGATTTTTGGTAGTCCGACGA 59.771 45.455 0.00 0.00 36.30 4.20
1666 4948 2.343544 GTCGATTTTTGGTAGTCCGACG 59.656 50.000 0.00 0.00 36.18 5.12
1667 4949 3.319755 TGTCGATTTTTGGTAGTCCGAC 58.680 45.455 0.00 0.00 43.32 4.79
1668 4950 3.663995 TGTCGATTTTTGGTAGTCCGA 57.336 42.857 0.00 0.00 36.30 4.55
1669 4951 6.479001 AGAATATGTCGATTTTTGGTAGTCCG 59.521 38.462 0.00 0.00 36.30 4.79
1670 4952 7.787725 AGAATATGTCGATTTTTGGTAGTCC 57.212 36.000 0.00 0.00 0.00 3.85
1671 4953 9.530633 AGTAGAATATGTCGATTTTTGGTAGTC 57.469 33.333 0.00 0.00 0.00 2.59
1674 4956 9.976511 CCTAGTAGAATATGTCGATTTTTGGTA 57.023 33.333 0.00 0.00 0.00 3.25
1675 4957 8.483758 ACCTAGTAGAATATGTCGATTTTTGGT 58.516 33.333 0.00 0.00 0.00 3.67
1676 4958 8.888579 ACCTAGTAGAATATGTCGATTTTTGG 57.111 34.615 0.00 0.00 0.00 3.28
1700 4982 7.584122 TCCTCCCTCGCTATATAATTCATAC 57.416 40.000 0.00 0.00 0.00 2.39
1702 4984 6.670027 ACTTCCTCCCTCGCTATATAATTCAT 59.330 38.462 0.00 0.00 0.00 2.57
1716 4998 1.003696 CTTGGGTGAACTTCCTCCCTC 59.996 57.143 15.72 0.00 40.48 4.30
1718 5000 0.038310 CCTTGGGTGAACTTCCTCCC 59.962 60.000 10.54 10.54 40.26 4.30
1758 5040 0.889638 ACGACGAAGACTGCAGGAGA 60.890 55.000 19.93 0.00 0.00 3.71
1760 5042 1.579932 GACGACGAAGACTGCAGGA 59.420 57.895 19.93 0.00 0.00 3.86
1772 5054 0.517132 CAATTGCTGCTTCGACGACG 60.517 55.000 0.00 0.00 41.26 5.12
1790 5072 6.645003 CCGACTCGATCCATATTACATTTTCA 59.355 38.462 0.00 0.00 0.00 2.69
1794 5076 5.977489 TCCGACTCGATCCATATTACATT 57.023 39.130 0.00 0.00 0.00 2.71
1825 5107 1.388547 GACAACTCCAACACCAGCAA 58.611 50.000 0.00 0.00 0.00 3.91
1826 5108 0.465460 GGACAACTCCAACACCAGCA 60.465 55.000 0.00 0.00 36.42 4.41
1829 5111 0.179067 GACGGACAACTCCAACACCA 60.179 55.000 0.00 0.00 36.12 4.17
1830 5112 0.179067 TGACGGACAACTCCAACACC 60.179 55.000 0.00 0.00 36.12 4.16
1831 5113 0.935196 GTGACGGACAACTCCAACAC 59.065 55.000 0.00 0.00 36.12 3.32
1832 5114 0.179067 GGTGACGGACAACTCCAACA 60.179 55.000 0.00 0.00 36.12 3.33
1833 5115 2.613390 GGTGACGGACAACTCCAAC 58.387 57.895 0.00 0.00 36.12 3.77
1851 5133 3.742248 GAGGGGGAGGAGGAGGTCG 62.742 73.684 0.00 0.00 0.00 4.79
1894 5176 0.607620 AATCAAACCCGGGCATTGTG 59.392 50.000 29.04 17.69 0.00 3.33
1896 5178 1.185315 AGAATCAAACCCGGGCATTG 58.815 50.000 26.28 26.28 0.00 2.82
1898 5180 1.550072 CAAAGAATCAAACCCGGGCAT 59.450 47.619 24.08 7.08 0.00 4.40
1899 5181 0.965439 CAAAGAATCAAACCCGGGCA 59.035 50.000 24.08 1.56 0.00 5.36
1946 5228 3.369643 AATTTTCGGCATGGCGGGC 62.370 57.895 36.93 2.11 0.00 6.13
1952 5234 3.497640 TCTTTTTGGCAATTTTCGGCATG 59.502 39.130 0.00 0.00 38.88 4.06
1968 5250 2.700371 CTCAACCCCCAAGCTTCTTTTT 59.300 45.455 0.00 0.00 0.00 1.94
1971 5253 0.540597 GCTCAACCCCCAAGCTTCTT 60.541 55.000 0.00 0.00 33.23 2.52
1973 5255 1.075659 AGCTCAACCCCCAAGCTTC 59.924 57.895 0.00 0.00 43.67 3.86
2002 5284 3.391296 TCAAACTCTAGGCACTCCACTTT 59.609 43.478 0.00 0.00 41.75 2.66
2018 5300 3.845781 ATCTGCATCCCGTATCAAACT 57.154 42.857 0.00 0.00 0.00 2.66
2026 5308 2.236146 TGTGTTTCTATCTGCATCCCGT 59.764 45.455 0.00 0.00 0.00 5.28
2057 5339 1.679305 ACGCTGGTCCATCTCGACT 60.679 57.895 13.18 0.00 33.07 4.18
2062 5344 4.101448 GCCCACGCTGGTCCATCT 62.101 66.667 0.00 0.00 35.17 2.90
2068 5350 4.344865 AAATCGGCCCACGCTGGT 62.345 61.111 0.00 0.00 42.12 4.00
2073 5355 0.937304 CACATAGAAATCGGCCCACG 59.063 55.000 0.00 0.00 46.11 4.94
2080 5362 4.174009 ACACGTCCTTCACATAGAAATCG 58.826 43.478 0.00 0.00 35.40 3.34
2085 5367 4.634883 GTCTAGACACGTCCTTCACATAGA 59.365 45.833 18.20 0.00 0.00 1.98
2087 5369 3.373130 CGTCTAGACACGTCCTTCACATA 59.627 47.826 22.37 0.00 34.95 2.29
2089 5371 1.534163 CGTCTAGACACGTCCTTCACA 59.466 52.381 22.37 0.00 34.95 3.58
2111 5393 6.552445 CCCATTTGTGGGGTAAATATGAAA 57.448 37.500 5.56 0.00 45.34 2.69
2129 5411 3.245052 GCCAGCTCCATATAGAACCCATT 60.245 47.826 0.00 0.00 0.00 3.16
2135 5417 2.965831 AGTTCGCCAGCTCCATATAGAA 59.034 45.455 0.00 0.00 0.00 2.10
2137 5419 2.681706 CAGTTCGCCAGCTCCATATAG 58.318 52.381 0.00 0.00 0.00 1.31
2139 5421 0.533755 GCAGTTCGCCAGCTCCATAT 60.534 55.000 0.00 0.00 32.94 1.78
2152 5434 4.238514 GACCATATATGTCCGAGCAGTTC 58.761 47.826 11.73 0.00 0.00 3.01
2159 5441 3.637694 TCAAACCGACCATATATGTCCGA 59.362 43.478 19.31 3.27 0.00 4.55
2218 5500 0.969894 CCTTCCTATACTCCGGCAGG 59.030 60.000 0.00 0.00 39.46 4.85
2220 5502 0.263765 ACCCTTCCTATACTCCGGCA 59.736 55.000 0.00 0.00 0.00 5.69
2291 5573 3.068165 GGTTTGGAGTGTTTTCCTTCCTG 59.932 47.826 0.00 0.00 38.12 3.86
2314 5596 4.100035 TGAGCAGATATTCAGTCATTCGGT 59.900 41.667 0.00 0.00 0.00 4.69
2343 5625 5.481824 ACATCTATGACAAGTTCCTGAGACA 59.518 40.000 0.00 0.00 0.00 3.41
2346 5628 5.039984 CGACATCTATGACAAGTTCCTGAG 58.960 45.833 0.00 0.00 0.00 3.35
2359 5641 2.476619 GCCGGTTGATTCGACATCTATG 59.523 50.000 1.90 0.00 0.00 2.23
2443 5725 3.044235 TCTGCTAATGGATATGGCGTG 57.956 47.619 0.00 0.00 0.00 5.34
2469 5751 2.278857 CGCGATCCGGTCCAGAAG 60.279 66.667 0.00 0.00 0.00 2.85
2500 5782 2.535485 TACACCCGCCTGCATCCAAG 62.535 60.000 0.00 0.00 0.00 3.61
2502 5784 3.006133 TACACCCGCCTGCATCCA 61.006 61.111 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.