>input_sequence_77130
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--------------------------------------------------------------------------ATGGCC
GTGGGGACG-TGCGGAGAACCGGCCGAGAGACACGAGCGGCACCGTGTCGACGCTCGATCCTGTGGGCAAGTCTTCTCGT
CGCCGGTCGCGCCGCATGCCACAGCAGGCACAGTCGCATCATTCCGAACGCGAGAAAGTCCGTCGCCTGACAGACAAACC
CGGCATGGCCGGCGATTGATGGCGGCCCCTCCCCTGGCAGCCGGTCGGCTCCGTCTCCGGCCCCGGGCAGGCAG---GGC
GATGATGCCACTGGAGAGGCGCCGTTCGCGGACACTGCATGAGTGTTGGGAGCAGAAGCACTGCACCGTCCAGGTAATAC
CCACAGGGTTTCTGTCTCTGAGCCCGAGCAGTCAGTCAGCTTGTGTCTGCTTTCCATGTTGTGCC----GACAGTACGGT
ATGCCGTATCACAGTGGCACGATTCCCTTAGAGTACATCTGGACTACGCTGCGCCGTTAGAG------------------
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-------------GATGTAACCGAAGCCCTAAACGGTGACCGATCACCCCTCGCATGTCCCGTCACCAACCGTCTCCGTC
ATTAG---------------------------------------------------------------------------
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-----------------------------------------------------
>chr3A_1_TraesCS3A01G145500
ATACTTGACGTAGCACGGCCCACAGTGTGGACGATGGACAGACAACCAGCAGCAAATGATTATATACGAGAAAAAATGAG
GAGAGGTAAATTGTCTTATCGTTCACATCTGGTCACGCGAATAATAAGTCGGGCGAAATGAAGTTATCCTGAATGTGCTG
GCTTGGGCAGATCCATGCATCTTCCACAGCGGATTTGGACAGAGATTAGGTGACATGCATCTTTATATGTCACCGTGTGA
CTTGCGGCCTAAATTTATATTTAAACATTATAAAAAATCTGAAAAAAATCATGCATATTCATAGCACATATTAAGATAAT
CCCTAAAAAATTCAGATCAAAATTCGAAACATACACCAAGAAACAAAAAAGAAAAACTCATATATGAATAGTATACAGAG
AACCATTCACAACTATTCATAACAGATTTTTCTTTTTTGCTTCTTGATGTATGTTTCGAATTTTGATCTGATTTTTTAAG
AATTATCTTAATATGTGCTATGAACATGCATGATTTTTTTCAGATTTTTTACAATGTTTAAATATGAATTTGGGCCGCAA
GTCACATGGTGACATGCAAAGGTGCATGTCACCTGATCCCTGTCCAGCGGATTTGGCCTGTTCAAATTTCCTTGTTCTTT
TTTTGAACCGAAGCA-----------AAGATGTTTTGCCTTGTCAGGACAGTCGTTGTTATAGTTTTAAATAGCCGGCTA
TAGCCTCGCTATAGCTGTTTGAGGGTGTTGCCGCTAAATGATTTCATGTACAATTTGCCGCTATAGCTCCGCTATAGCCT
AGCTATAGCTGTTTTTAAGGGTCGCCGCTAAATGCCATAGCCCGCTATTTAAAATATTGGTCGTTGCACGCGGCACTGGT
CAGTGAGCGGCACTCAGCGGCCGTCCACACAGTACACACACGCTGCACTGTACTGCAACCAGCCTGGGTTCCAG------
-----GAGTCGGGGTCTTGAGGTTGGCGCTTGGGGCACGCCTA-------------------------------------
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-------------------------------------------------------GAGGCCCAACCAAGACCACATGGCC
GTGGGGACG-TGCGGAGAACCGGCCGAGAGACACGAGCGGCACCGTGTCGACGCTCGATCCTGTGGGCAAGTCTTCTCGT
CGCCGGTCGCGCCGCATGCCACAGCAGGCACAGTCGCATCATTCCGAACGCGAGAAAGTCCGTCGCCTGACAGACAAACC
CGGCATGGCCGGCGATTGATGGCGGCCCCTCCCCTGGCAGCCGGTCGGCTCCGTCTCCGGCCCCGGGCAGGCAG---GGC
GATGATGCCACTGGAGAGGCGCCGTTCGCGGACACTGCATGAGTGTTGGGAGCAGAAGCACTGCACCGTCCAGGTAATAC
CCACAGGGTTTCTGTCTCTGAGCCCGAGCAGTCAGTCAGCTTGTGTCTGCTTTCCATGTTGTGCC----GACAGTACGGT
ATGCCGTATCACAGTGGCACGATTCCCTTAGAGTACATCTGGACTACGCTGCGCCGTTAGAG------------------
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-------------GATGTAACCGAAGCCCTAAACGGTGACCGATCACCCCTCGCATGTCCCGTCACCAACCGTCTCCGTC
ATTAGCAGTGAAGTCCGAAATAAACCTTAAACTCGTACACCTCGACAGAATCA--------AATCCATGCAATCTCATGC
AACGCTGAGATAACATGCATAGTTTATCTACTAGCTCAACACACAACATGAGAGACTTTATACATGTCGTCGGACTACCA
AAAATCGACATATTCTACTAGGTATGAATTATATAGCGAGGGAGGAAGTTCACCCAAGGCCGCCCTTGCATTTGCTCTTT
CTCCTGCAGTCTTCGTCGTCGAAGCAGCAATTGAAAATGTAATATGGATCGAGTCGGATCTGCTCATTGCTGGTGTTGGA
GTTGTCCGTCACCGACCTCCTCCTCCCCCTCTTTGGGGGCACACCGGCGAGGGCGCACAATGCCCGGGTTTGATTCTTTG
CAAGGTCACGCGCCGTTCGTGTCCGCTGCCCGCCATGCCGAAAATTGCCAAAAAGAAGCTTGGGGGTTGAGCTGAGCGGT
CTGAAAGTGGAGTGCCTAGAGTTTGATACGGGATGCAGATAGAAACACATATTTGTGTAGTCGAGATGGACCAGCGTGGG
CCGATTTCTATGTGAAGGACGTGTCTAGACGTTTTCATATTTACCCCACAAATGGGTTCTATATGGAGCTGGCGAACTGC
TCGGACATATATGGTCGGTTTGAAGTGTCCGGTTAGGTAACATTTTCGTGACCAGGCCACCTGCCGGAGTATAGGAAGGG
TCCGATGACATATAGGAAGGTCTTATATAGATGCTCTTCTTTTCTACTGTACCAGGAAGGAAAACACTCCAAACCACCGA
ATGACTGAATATCTGCTCATGAGTTGTCTCAGGAACTTGTCATAGATGTCGAATCAACCGGCGCGTTCAGCGTTGTTAGC
CGACATAATCAAGATCCTAGTAGCACCTTGTTTTATCAAGTCGACACGCCATATCCATTAGCAGAAACGACTTCTGGACC
GGATCGCGAGCGAAAGTAAGGCTTGGATGCAGGCGGGTGTACTGCGAGGAGAT
>chr3B_1
ATACTTGACGTAGCACTGCCCAGGGTGTGGACGATGGACAGATAACCAGCAGCAAATGATTATCCA--AGGAAAAACGAG
GAGAGGTAATTTGTCTTATCATTCACATCTGGTCACGCGAATAATGAAGTTCTGCTGA------------GAATGTGCTG
GCTTGGGCAGATCCATGCATCTTCCAGAGCTC------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------ATTTGGCCTGTTCAAACTTCCCTTTTCATT
TT------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------CACTGTACCGCAGCCTGGGTTCGAGCCTCGAGGAG
TCGCCGAGTCGGGGTCTTCAGGTCGACGCTTGGGGCACGCCTA-------------------------------------
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-------------------------------------------------------GAGGCCCAACCAAGACCACATGGCC
GTGGTGACAC-GCGGAGAACCGGCCGAGAGACGCGAGCGGCACCGTGTCGACTC----TCCTGTGGGGAAGTCTTCTCGT
CGCCGGTTGCGCCGCATGCCACAGCA----CAGTCCCATCATTTCGGACTCGAGAAAGTCCGTCACCTGACAGACAAACC
CGGCATGGCCGGCGACTGATGGCGGCCCCTCCCGTGGCAGCCGGTCGGCTCCGTCTCCGGCCCCGGGCGGGCA-------
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>chr3D_2
-TACTTGACGTAGCACGGCCCAGAGTGTGGACGATGGACAGATAACCAGCAGCAAATGATTATCCA--AGGAAAAACGAG
GAGAGGTAAATTGTCTTATCATTCACATTTGGTCACGCTAATAATGAAGTTCCG--------------CTGAATGTGCTG
GCTTGGGCAGATCCATGCATCTTCCAGAGCTC------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------ATTTGGCCTGTTCAAACATCCCTTTTCATT
TTTCACTATAGCCAGGACACCGAAGCAAGCTGTTTTGGCTTGTCAGGACAGTCGTTGCACGCGA----------------
--------------------------------------------------------------------------------
------------------------------------------------------------------CACTTGGCACTGGT
CAGTGAGGAGCACCCAGCGGTCGTCCACACAGTACACACACGCTGCACTGTACCGCAGCCTGGGTTCGAGCCTCGAGGAG
TCG--------GGGTCTTCAGGTCGACGCTTGGGGCACGCCTACGGCGTGTTTGGTTGCCGTGTGCAACAGTTGCGTGCA
TCGCATACACTTCTCTATTCAGCCTGGCTATGCAAATGCAGCCTCAAATGCATCATATATATGTTGTTTGGTTGCCTGCA
TGCCCTCTTACCTGCATGGGCTGAACCACACTGTCTGGTGTTTGGTTGCCTGCATGTTAGTCCACAAACCCAAGACATGG
TGTTTGGTTGTACGCAAGGCCTGATGTGTGGTAACCTCTTTGGCTAGTTGGTAAGGTTACCACCACACTTCGGCATCACA
CATCATAAGCACAACAGAGTATAAAACAGAGGATCAACTAGCATAATTCAGATATAAGCAGTACCACAGATATAATAGTT
CAACGCATAAACCATCAACTAGCATAATTCGATAGTACGCTCGAAAGAGGTGGCCCAGCCCTACTCCTTGGCGGCGAAGG
CGTCGTCGTGCTTCCTGCACTTGTTGACGACCTCAATGCCATCGTCGTCGAAGATGATGACCTTGAGGGTGTCAGGAGTG
AGGAGCTTGAACGTCACCATGTGGCCGATCTTGATCTGATGAACGGCTGCGTAGGTGGCCCAACCCTGATCCAGGGTCAC
CCTGCCGTTCATCAGCTTGACCGTCACCTTCCAGGAGCAGCCGATGTTGTTCCTGAGCTTGAACTCCGTCGGCACCGCGA
CGAAGTGCTTGGTGAAGTCCAGGGGCATGGGGATGCACTCAAGCTTCGGTGCAAGGATGACCTTGCAGAAGTGAGTTGGG
CCATCCTCGTGATGGTAGTGGCTGTAGTTGCGGCGCTTGTTGCTGGGGGGTTCCTCCATGCCCTCGTCGTCGCCACCCTC
AGGCGTCTTCGGGTCTTCCTCGACGGTGGCCGGCAGCACAACCTCATCGGGCATTGGGTGAACGGGCTCCTTGCCCTTGT
TGTCAACGGCCGGGAGCACCTCCGTGCCCATCTCATTGGTATCCTCGATCTGCACACAAGTCATGGAGTCAGGCATTGCA
CAGAGTTCATGGCTAATTCAAGAGCTTGTAGTTAAAACGGCATGACTGTCACTCTTCTCCTCCTCTCCATCCCCCCTATA
TTTACTCACCCTGCCGAGCACTATTTACCCACCCCCTCTTTTCTCTCACTGTCAACCTTCCTCCTCCCCATCGCCATGAG
CTCTAGCTCCAGCTCCAATGCCAACCCCTTCCCTTGGGGTATTGGCTGGAGGGCCTTCTTCCTCGGGTGGACGGCTGGTG
ACTGGACCAAGTTCGAGAACACCATGGAGGTGTGCTCGAACTTCGGCTTCATGCCGGACATGCAGAACAAATCTAATGCC
GTGCTCATGAAGGCCACTAAAGAAGAGCTGAAGACGCTGATTCCTGACCCAGCGAAGGGCGCGATGGCAGTTGACATCAT
TCGCTGGGCCATGAATCAGGCCGTCTCCGACGACCCTAAACAGAGGAAGAAGTGGTGCAAGTACAGGACCTACTGGGCTC
CTAATAACCGCCGTGCCGCAGTGTACTAGGAGACGGCTATCGTGCCACCAGCAGTCATCGGCGGGGAGCCTAAGGAGGAG
GAAGAAGAGGCGGTGCACATGCCAGCTAGGGCGCCGGAGCCAGTCCGTCCTACCTGGCAGATCGACCTCGACTCCGCCGA
GGACGACGAGGACGACCCGTCGGCCCGCACGGCGATGAAGAAGATGAAGGCCAGCGGCTCGACTAGCCGCTCCGCACGCC
GGTGACGGCCGCCGCGGCCAGCCGGTGTCCGTTGTGTACCCCCTTTCCCCCTATTCCCCTATCCCCCAATCCCGAAATCT
ACCTTATGCATTCCGATCTTGCATGTATGAACTCGTATGAACTGCTATGAACTAGTGTGAACTACCCCTATGCTTATCTA
CCTCTATTCCCCATTCCCCTCCGCCGTGGATCGAATCTATCGCCGTGGATCGAATCTAGCGTGCATGTCGAAGAGAGAGA
AGTGCTTACCGCCATTGATGGAGTCCGGTGGTCTTCTTCCTCTGCTCCGATCCGCCGCCGCCGGTGATGGAGTCCGGTGG
TCTTCTTCTTCTGCTCCGATCCGCCGCCGCCGGTGAGAGTTGGGAGAGTGGGGAAGAGTGGGGAGAGGGAGCGGTGAGGG
GCGGTGAGGCTAATAACTGCCGGTGCTTCGGGAAGCAACACGGCTTATCGGGGGTGGCCGCGCGCGTGCAGCCGCGCTCG
CCCACGTGCACCGCTCGGGCCTGGCCTTGGAGAAACTGCCGATTCATACGTTTCGAGCGAGGCAGGCCCAGAGCTGCTTT
AAACATCGTGCTATGCAGGCCCAATAATAAAACTAGGCAACCAAACCCGTCCCTAGAGTCCCAACCGAGACCACATGGCC
GTGGGGACATTGCGGAGAACCGGCCGAGAGACGCGAGCGGCTCCGTGTCGACTC----TCCTGTGGGCAAGTCTTCTCGT
CGCCGGTCGCGCCGCATGCCACAGCAGGCACAGTCGCATCATTTCGCACTCAAGAAAGTCCGTCGCCTGATAGACAAACC
CGGCATGGCCGGCGACTGATGGCGGCCCCTCCCGTGGCAGCCGGTCGGCTCCGTCTCCGGCCCCGGGCAGGCAGGCAGGC
GATGATGCCACTGGAGAGCCGCCGTTCGCGGACACTGCATGAGTGTTGGGAGCAGAAACACTGCACCGTCCAGGTAATAC
CCACAGGTTCCC-GTCTCCGAGCCCGAGCGGTCAGTCATCTTGTGTCTGCTTTTCATGCTGCACCGACAGACAGTACAGT
ATACCATGTCACAGTGGCACGATTCCCTTAAAGTACATTTGGACTACACTGGGCCGTTAGAGCATCTGACTTGGCAAATT
CAGCCCCTCAAACGCCCGCGGACACGTCCGGACGCGTCCGCGGGCACTGACCGGGCACCCCTCAAATGTTGGCCGCATAT
TCACATATCGTAAATTTTGATCCTCAAATTCATGTGATCCATGCACGTCGATCAATGATACAAACTGTCCGAATGTCAAA
GTTCGTAACAAAGCAAAACAAATCATAGTTTAAGAAACCAGGCATGGCAAAATGAAATCAATATCCGAGCGTGACGGATG
GCATCGGATCACTGGCTCGGCGCCTGCTCTGACCGGAAAGCTCTCCGGAATGGCCCAGCCGGCGCTCGGATCATCGAATG
CCCCAAAGGGGACGGACAGCGTAATCCACGTAGGTGCTCAGAAGGAAGGGGTGCGGGGATCCGGGCGCGGCGAAGGAGAC
AGCTGCTTCACCACGTCTGTACTTCCCTGCGACGCCCCGCAACTTGCGGGCGACGTTCTCCGCCTTGCAAGTCGCCGCCG
CCAACACCATGCCTCCCACGGACGAGGCGGACTGCGTCTCCATCGCGGCGGTATGGGTCGGGCTGGACGACATCTCCGGC
GATGGATCAGGACCGGAGGTGAGGATTGAGAGAAAGGGTGGAGGCCGGCGAGGGTCCGGACGCGAGAATGGTTGGAGGGC
GGTGGGAGGAGGAGGAAGGGCTTGGTGGATTTGATGCAATTTAGGGTGGGGGCGGGTTGTCGGGTCCGACGTGGCGGGCG
TGTCCGGGCGCCCCTATATCCGCCCCATATTTGGGCTGGATATGGGGGTGCCGGTCAGCCCGGGTGTTTGAGGGCCGTTT
GAGAGGCCCGTATGGGTCAAAAAATCGTGACCAGGTGGCCTGCCCAGGCGTTTGAGACGTGTTTGAGAGGTCCGGTTGTA
GATGCTCTTAGAGGATCTAACTGAACCCATAAACAGTGACCGATCACCCCTCGCATGTCCCGTCCGCAACCATCTCCTTC
GTCAGGAGTGAAGTCCGAAATAAACCTTGAACTCGTGCGCCTTGACGGAATCAAATCCTCAAATCCATGCAATCTCACGC
AACGCCGAAATAACATGCATAATTTATCTACTAGATCAACACACAACATGAGAGACTTTATACAA--------------A
AAAATCGACACATTCTACTAGCTCTGAATTATATAGCTATGGAGGAAGTTCACCCAAGGCCGCCCTTGCATTTGCTCTTC
CCCCTACAGTCTTTGTCGTCGAAGCAGCAATCGAAGATGTAATATGGATCGAGTCGGATCTGCTCACCGCGA------GA
GTTGTCCGTCACTGACCTCCGCCTTCCCCTCTTTGGGGGCACACCGGCGAGGGCGTAGACCGCCCGGGTTTGCTTCTTCG
CAAGGTCACGCCCCATCCGGGTCTGCTACCCGCTATGCCGAAAATTGCCGAAGAAAAGCTTGGGGGTTGAGCTGAGCGGT
CTGGAAGTGGAGTGCCTAGGGTTTGATCCGGGATGCGGATAGGAACACATATTTGTGTGGTCGGGGTGGGCCAGTGTGGG
CAGATTCCAACGTGAAGGACGTGTCTAGACGTCTTCATATCCGCCCCACATATGGGCTGTGTATGGGG-TGGCAAACTGC
CCGGACATATATGGTCGGTTTGAAGTGTCCGGTTAGGTAACATTTTCGTGATCAGGCCATCCGCCGGAGTATAGGAAGGG
TCCGATGACATATAGGAAGGTCTTATATAGATGCTCTTATTTTCTACTGTACTAGGAAGGAAAACACTCCAAACCGCCGA
ATGACTGAATGTTTGCTCATGAGTCGTATCAGGAACTTGTTATAGATGTCGAATCAACCGGCGCGTTCAGCGTTGTTAGC
CGACATGATCAAGATCCTAGTAGCACCTTGTTTTATCAAGTCGATACGCCATATCCATTAGCAGAAACGATTTCTGGACC
GGGTCGCGAGCGAAAGTAAGGTTCGGATGCAGGCGGGTATACTGCGAGGAGAT
>SNPs
----------------------S-------------------S--------------------SS-SS--S-----S---
--------------------S------------------------S-SSSSSSSSSS-SSSSSSSSSS------------
--------------------------S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------S----S-S---S--
---SSSSSSSSSSSS--------------S-------S-------------------SSSSS-SSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---SS---------
-------SS----S------S--------------------------------S---S--S-SS-SS-SS--SS------
------------------S----S-S------------------------------------------------------
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--------S-----------------------S-------------------S-SSSS----------------------
-------------------------------------------S--S--S------------------------------
---------------S-----------------S----------------------------------------------
------------------S--------------------------------------S----------------------
-------S-SS-S-----S----------S--------S--------------S----S--SS--------------S--
--S--S-S----------------------S-------S--------S---S----------------------------
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----------------S----S---S--S-----S-----------------------------SS-----S-----S--
S-S--S----------------------S-------S-S---S---S------------------------------S--
-----S--S------------S------------S-----------------------------SSSSSSSSSSSSSSS-
----------S----------S-S-------------S-S---------------------------------------S
-S---S-------S-----------------S---S------------------------------SS--SSSSSSSS--
------------S-------S---S------------------------------S-S-SS-----------S-----S-
-----------S--S-S--S---S---S-----S---------------S--S-S-------------------------
---S---------------S-------S--------S-----S---------------S----S-S---S----S-----
-S----S-S-S---------------------S-------SSS-------S-----S-S-S-----S-S----S------
S--------------------------------------------------S-------S-S------------------
--------------------------------------S-------------S----------------------S----
----------S-S-----------S--S------------S---------------------------------------
------S-------------------------------------S-------------------------S---------
--S------------------S-S--------------S--------------
>forward_195
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---------------TGCATCTTCCACAGCGGATT---------------------------------------------
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>reverse_3416
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-------------------------------------------------------CGATCCTGTGGGCAAGTCTT-----
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>forward_759
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-------------------TGAGGGTGTTGCCGCTAAAT-----------------------------------------
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>reverse_5000
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---------------------------------------GGGAGGAAGTTCACCCAAGG---------------------
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-----------------------------------------------------
