Multiple sequence alignment - TraesCS3A01G138000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G138000 chr3A 100.000 2639 0 0 952 3590 114772152 114769514 0.000000e+00 4874
1 TraesCS3A01G138000 chr3A 100.000 718 0 0 1 718 114773103 114772386 0.000000e+00 1327
2 TraesCS3A01G138000 chr3B 93.895 1933 83 12 952 2873 148293187 148291279 0.000000e+00 2883
3 TraesCS3A01G138000 chr3B 89.111 450 42 2 1304 1746 485701206 485700757 1.460000e-153 553
4 TraesCS3A01G138000 chr3B 91.892 296 22 2 3031 3324 44638871 44639166 2.580000e-111 412
5 TraesCS3A01G138000 chr3B 89.723 253 18 5 68 320 148295478 148295234 2.080000e-82 316
6 TraesCS3A01G138000 chr3B 88.085 235 21 6 3323 3556 148291101 148290873 4.570000e-69 272
7 TraesCS3A01G138000 chr3B 87.027 185 14 8 539 718 148293441 148293262 2.190000e-47 200
8 TraesCS3A01G138000 chr3D 93.621 1944 84 15 952 2873 97612371 97610446 0.000000e+00 2867
9 TraesCS3A01G138000 chr3D 91.000 300 25 2 3031 3328 34725338 34725637 1.550000e-108 403
10 TraesCS3A01G138000 chr3D 87.085 271 16 10 173 436 97612949 97612691 4.540000e-74 289
11 TraesCS3A01G138000 chr3D 87.660 235 18 7 3323 3556 97610289 97610065 2.750000e-66 263
12 TraesCS3A01G138000 chr3D 82.182 275 31 11 450 718 97612708 97612446 1.680000e-53 220
13 TraesCS3A01G138000 chr7B 91.556 450 29 5 1304 1746 356983550 356983103 2.370000e-171 612
14 TraesCS3A01G138000 chr1A 90.991 444 30 8 1304 1746 469399213 469398779 1.110000e-164 590
15 TraesCS3A01G138000 chr2A 86.456 443 39 6 1310 1746 106109557 106109130 1.950000e-127 466
16 TraesCS3A01G138000 chr2A 92.069 290 21 2 3037 3324 762692019 762691730 1.200000e-109 407
17 TraesCS3A01G138000 chr5D 93.080 289 19 1 3037 3324 58674347 58674059 4.290000e-114 422
18 TraesCS3A01G138000 chr4A 91.837 294 21 3 3033 3324 299609836 299609544 1.200000e-109 407
19 TraesCS3A01G138000 chr6A 92.281 285 21 1 3034 3317 277536130 277535846 1.550000e-108 403
20 TraesCS3A01G138000 chr6D 91.216 296 24 2 3031 3324 308585922 308586217 5.580000e-108 401
21 TraesCS3A01G138000 chr5A 91.186 295 23 3 3031 3324 384032672 384032964 7.220000e-107 398
22 TraesCS3A01G138000 chr7A 91.379 290 24 1 3037 3325 645255938 645255649 2.600000e-106 396


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G138000 chr3A 114769514 114773103 3589 True 3100.50 4874 100.0000 1 3590 2 chr3A.!!$R1 3589
1 TraesCS3A01G138000 chr3B 148290873 148295478 4605 True 917.75 2883 89.6825 68 3556 4 chr3B.!!$R2 3488
2 TraesCS3A01G138000 chr3D 97610065 97612949 2884 True 909.75 2867 87.6370 173 3556 4 chr3D.!!$R1 3383

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
32 33 0.034756 GGGTGTTTGGTTCCATTGCC 59.965 55.0 0.0 0.0 0.0 4.52 F
184 185 0.179070 GGCGGCTTTTGGGTTTTTGA 60.179 50.0 0.0 0.0 0.0 2.69 F
612 2246 0.248289 TTTGTGCCTACCTCTACCGC 59.752 55.0 0.0 0.0 0.0 5.68 F
635 2278 0.818296 GTGTCATCGGTAGGAGCACT 59.182 55.0 0.0 0.0 0.0 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1485 3147 1.153107 CTGAATGGCCTCCGCATCA 60.153 57.895 3.32 0.0 36.38 3.07 R
2065 3727 1.030488 TAGAACTCCCGCTCGTCCAG 61.030 60.000 0.00 0.0 0.00 3.86 R
2520 4182 2.186125 CGGCCGACTCTAAACCCC 59.814 66.667 24.07 0.0 0.00 4.95 R
2600 4262 3.252458 ACAGGACGGTTCTAATTTGTTGC 59.748 43.478 0.00 0.0 0.00 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.003788 CCACTCTCGGCGGGTGTT 62.004 66.667 12.36 0.00 0.00 3.32
20 21 2.030562 CACTCTCGGCGGGTGTTT 59.969 61.111 12.36 0.00 0.00 2.83
21 22 2.030562 ACTCTCGGCGGGTGTTTG 59.969 61.111 8.93 0.00 0.00 2.93
22 23 2.742372 CTCTCGGCGGGTGTTTGG 60.742 66.667 6.68 0.00 0.00 3.28
23 24 3.530910 CTCTCGGCGGGTGTTTGGT 62.531 63.158 6.68 0.00 0.00 3.67
24 25 2.593436 CTCGGCGGGTGTTTGGTT 60.593 61.111 7.21 0.00 0.00 3.67
25 26 2.592287 TCGGCGGGTGTTTGGTTC 60.592 61.111 7.21 0.00 0.00 3.62
26 27 3.666253 CGGCGGGTGTTTGGTTCC 61.666 66.667 0.00 0.00 0.00 3.62
27 28 2.519780 GGCGGGTGTTTGGTTCCA 60.520 61.111 0.00 0.00 0.00 3.53
28 29 1.906333 GGCGGGTGTTTGGTTCCAT 60.906 57.895 0.00 0.00 0.00 3.41
29 30 1.468506 GGCGGGTGTTTGGTTCCATT 61.469 55.000 0.00 0.00 0.00 3.16
30 31 0.319469 GCGGGTGTTTGGTTCCATTG 60.319 55.000 0.00 0.00 0.00 2.82
31 32 0.319469 CGGGTGTTTGGTTCCATTGC 60.319 55.000 0.00 0.00 0.00 3.56
32 33 0.034756 GGGTGTTTGGTTCCATTGCC 59.965 55.000 0.00 0.00 0.00 4.52
33 34 0.755686 GGTGTTTGGTTCCATTGCCA 59.244 50.000 0.00 0.00 0.00 4.92
34 35 1.139853 GGTGTTTGGTTCCATTGCCAA 59.860 47.619 0.00 0.00 42.38 4.52
35 36 2.209273 GTGTTTGGTTCCATTGCCAAC 58.791 47.619 0.00 0.00 43.59 3.77
36 37 1.202463 TGTTTGGTTCCATTGCCAACG 60.202 47.619 0.00 0.00 43.59 4.10
37 38 1.115467 TTTGGTTCCATTGCCAACGT 58.885 45.000 0.00 0.00 43.59 3.99
38 39 1.115467 TTGGTTCCATTGCCAACGTT 58.885 45.000 0.00 0.00 39.57 3.99
39 40 0.671251 TGGTTCCATTGCCAACGTTC 59.329 50.000 0.00 0.00 0.00 3.95
40 41 0.386731 GGTTCCATTGCCAACGTTCG 60.387 55.000 0.00 0.00 0.00 3.95
41 42 0.386731 GTTCCATTGCCAACGTTCGG 60.387 55.000 0.00 5.05 0.00 4.30
59 60 4.622456 CGCGCCGTGCACCTTTTT 62.622 61.111 12.15 0.00 46.97 1.94
99 100 1.667724 TGTTTTGGCGCCATTTGTTTG 59.332 42.857 33.25 0.00 0.00 2.93
101 102 0.533755 TTTGGCGCCATTTGTTTGGG 60.534 50.000 33.25 0.00 37.24 4.12
102 103 2.741985 GGCGCCATTTGTTTGGGC 60.742 61.111 24.80 0.00 44.27 5.36
103 104 2.741985 GCGCCATTTGTTTGGGCC 60.742 61.111 0.00 0.00 44.90 5.80
106 107 2.739784 CCATTTGTTTGGGCCGCA 59.260 55.556 0.00 0.00 32.80 5.69
136 137 4.731612 CGTCTGCCGCTGCTGTCT 62.732 66.667 0.70 0.00 38.71 3.41
178 179 4.678743 GAGGGGCGGCTTTTGGGT 62.679 66.667 9.56 0.00 0.00 4.51
184 185 0.179070 GGCGGCTTTTGGGTTTTTGA 60.179 50.000 0.00 0.00 0.00 2.69
188 189 1.930503 GGCTTTTGGGTTTTTGACACG 59.069 47.619 0.00 0.00 32.95 4.49
320 321 2.736615 TTCAATGCGCGCTGACGA 60.737 55.556 33.29 19.66 43.93 4.20
321 322 2.729675 TTCAATGCGCGCTGACGAG 61.730 57.895 33.29 15.54 43.93 4.18
322 323 4.214383 CAATGCGCGCTGACGAGG 62.214 66.667 33.29 10.65 43.93 4.63
323 324 4.435436 AATGCGCGCTGACGAGGA 62.435 61.111 33.29 9.65 44.37 3.71
324 325 4.862092 ATGCGCGCTGACGAGGAG 62.862 66.667 33.29 0.00 43.39 3.69
336 364 4.849329 GAGGAGCGTGCCCGTACG 62.849 72.222 8.69 8.69 46.28 3.67
365 393 1.407258 GGAGATGACGGAGACAAGAGG 59.593 57.143 0.00 0.00 35.03 3.69
366 394 2.370349 GAGATGACGGAGACAAGAGGA 58.630 52.381 0.00 0.00 35.03 3.71
367 395 2.357637 GAGATGACGGAGACAAGAGGAG 59.642 54.545 0.00 0.00 35.03 3.69
368 396 2.025793 AGATGACGGAGACAAGAGGAGA 60.026 50.000 0.00 0.00 35.03 3.71
369 397 1.827681 TGACGGAGACAAGAGGAGAG 58.172 55.000 0.00 0.00 0.00 3.20
370 398 0.454196 GACGGAGACAAGAGGAGAGC 59.546 60.000 0.00 0.00 0.00 4.09
371 399 1.309499 ACGGAGACAAGAGGAGAGCG 61.309 60.000 0.00 0.00 0.00 5.03
373 401 1.140804 GAGACAAGAGGAGAGCGCC 59.859 63.158 2.29 0.00 0.00 6.53
374 402 2.185608 GACAAGAGGAGAGCGCCC 59.814 66.667 2.29 0.00 0.00 6.13
375 403 3.708220 GACAAGAGGAGAGCGCCCG 62.708 68.421 2.29 0.00 0.00 6.13
416 444 1.126488 ATCGATGACATCCAGCACCT 58.874 50.000 9.87 0.00 0.00 4.00
417 445 1.775385 TCGATGACATCCAGCACCTA 58.225 50.000 9.87 0.00 0.00 3.08
419 447 2.700371 TCGATGACATCCAGCACCTATT 59.300 45.455 9.87 0.00 0.00 1.73
420 448 3.134623 TCGATGACATCCAGCACCTATTT 59.865 43.478 9.87 0.00 0.00 1.40
421 449 4.343814 TCGATGACATCCAGCACCTATTTA 59.656 41.667 9.87 0.00 0.00 1.40
422 450 5.012046 TCGATGACATCCAGCACCTATTTAT 59.988 40.000 9.87 0.00 0.00 1.40
423 451 5.349817 CGATGACATCCAGCACCTATTTATC 59.650 44.000 9.87 0.00 0.00 1.75
424 452 5.628797 TGACATCCAGCACCTATTTATCA 57.371 39.130 0.00 0.00 0.00 2.15
425 453 5.614308 TGACATCCAGCACCTATTTATCAG 58.386 41.667 0.00 0.00 0.00 2.90
426 454 5.130975 TGACATCCAGCACCTATTTATCAGT 59.869 40.000 0.00 0.00 0.00 3.41
427 455 6.006275 ACATCCAGCACCTATTTATCAGTT 57.994 37.500 0.00 0.00 0.00 3.16
428 456 6.058183 ACATCCAGCACCTATTTATCAGTTC 58.942 40.000 0.00 0.00 0.00 3.01
429 457 5.036117 TCCAGCACCTATTTATCAGTTCC 57.964 43.478 0.00 0.00 0.00 3.62
430 458 4.721776 TCCAGCACCTATTTATCAGTTCCT 59.278 41.667 0.00 0.00 0.00 3.36
431 459 5.903010 TCCAGCACCTATTTATCAGTTCCTA 59.097 40.000 0.00 0.00 0.00 2.94
432 460 6.042093 TCCAGCACCTATTTATCAGTTCCTAG 59.958 42.308 0.00 0.00 0.00 3.02
433 461 6.042093 CCAGCACCTATTTATCAGTTCCTAGA 59.958 42.308 0.00 0.00 0.00 2.43
434 462 7.256475 CCAGCACCTATTTATCAGTTCCTAGAT 60.256 40.741 0.00 0.00 0.00 1.98
435 463 8.153550 CAGCACCTATTTATCAGTTCCTAGATT 58.846 37.037 0.00 0.00 0.00 2.40
436 464 8.718656 AGCACCTATTTATCAGTTCCTAGATTT 58.281 33.333 0.00 0.00 0.00 2.17
437 465 9.343539 GCACCTATTTATCAGTTCCTAGATTTT 57.656 33.333 0.00 0.00 0.00 1.82
489 517 9.444600 GATTTGGTTTGTCAGGATTAACTACTA 57.555 33.333 0.00 0.00 0.00 1.82
490 518 8.842358 TTTGGTTTGTCAGGATTAACTACTAG 57.158 34.615 0.00 0.00 0.00 2.57
491 519 7.549147 TGGTTTGTCAGGATTAACTACTAGT 57.451 36.000 0.00 0.00 0.00 2.57
492 520 7.383687 TGGTTTGTCAGGATTAACTACTAGTG 58.616 38.462 5.39 0.00 0.00 2.74
493 521 6.817140 GGTTTGTCAGGATTAACTACTAGTGG 59.183 42.308 5.39 4.89 0.00 4.00
494 522 5.593679 TGTCAGGATTAACTACTAGTGGC 57.406 43.478 5.39 0.00 0.00 5.01
505 533 5.153950 ACTACTAGTGGCCTCTTCTTTTG 57.846 43.478 13.50 2.21 0.00 2.44
519 547 6.421801 CCTCTTCTTTTGCACGAATCAATTTT 59.578 34.615 0.00 0.00 0.00 1.82
525 553 5.461032 TTGCACGAATCAATTTTTACCCT 57.539 34.783 0.00 0.00 0.00 4.34
526 554 5.461032 TGCACGAATCAATTTTTACCCTT 57.539 34.783 0.00 0.00 0.00 3.95
527 555 5.226396 TGCACGAATCAATTTTTACCCTTG 58.774 37.500 0.00 0.00 0.00 3.61
528 556 5.010112 TGCACGAATCAATTTTTACCCTTGA 59.990 36.000 0.00 0.00 33.75 3.02
529 557 5.572896 GCACGAATCAATTTTTACCCTTGAG 59.427 40.000 0.00 0.00 32.82 3.02
530 558 6.677913 CACGAATCAATTTTTACCCTTGAGT 58.322 36.000 0.00 0.00 32.82 3.41
531 559 7.574217 GCACGAATCAATTTTTACCCTTGAGTA 60.574 37.037 0.00 0.00 32.82 2.59
532 560 8.293867 CACGAATCAATTTTTACCCTTGAGTAA 58.706 33.333 0.00 0.00 32.82 2.24
533 561 8.852135 ACGAATCAATTTTTACCCTTGAGTAAA 58.148 29.630 0.00 0.00 39.76 2.01
534 562 9.855021 CGAATCAATTTTTACCCTTGAGTAAAT 57.145 29.630 0.00 0.00 40.80 1.40
555 2189 5.718724 ATTTCTTTTCTTCTGGCTGGAAG 57.281 39.130 12.29 12.29 42.72 3.46
576 2210 5.803020 AGATGAATTCTTACCGTCAAAGC 57.197 39.130 7.05 0.00 0.00 3.51
577 2211 5.491982 AGATGAATTCTTACCGTCAAAGCT 58.508 37.500 7.05 0.00 0.00 3.74
579 2213 6.758886 AGATGAATTCTTACCGTCAAAGCTAG 59.241 38.462 7.05 0.00 0.00 3.42
604 2238 1.589803 AACGACTGTTTGTGCCTACC 58.410 50.000 0.00 0.00 33.53 3.18
607 2241 1.000955 CGACTGTTTGTGCCTACCTCT 59.999 52.381 0.00 0.00 0.00 3.69
608 2242 2.230508 CGACTGTTTGTGCCTACCTCTA 59.769 50.000 0.00 0.00 0.00 2.43
609 2243 3.586892 GACTGTTTGTGCCTACCTCTAC 58.413 50.000 0.00 0.00 0.00 2.59
611 2245 1.274167 TGTTTGTGCCTACCTCTACCG 59.726 52.381 0.00 0.00 0.00 4.02
612 2246 0.248289 TTTGTGCCTACCTCTACCGC 59.752 55.000 0.00 0.00 0.00 5.68
613 2247 0.901114 TTGTGCCTACCTCTACCGCA 60.901 55.000 0.00 0.00 0.00 5.69
635 2278 0.818296 GTGTCATCGGTAGGAGCACT 59.182 55.000 0.00 0.00 0.00 4.40
638 2281 1.589993 CATCGGTAGGAGCACTGCG 60.590 63.158 0.00 0.00 31.84 5.18
659 2302 2.202557 CAGTGATACGCGTCGGCA 60.203 61.111 18.63 10.07 39.92 5.69
987 2630 3.803162 GGGAAGCTGGAGGGGAGC 61.803 72.222 0.00 0.00 36.65 4.70
1219 2875 1.428620 GACGACTACGACAGCTCCC 59.571 63.158 0.00 0.00 42.66 4.30
1244 2900 4.284550 CACCACCCCCACCACTGG 62.285 72.222 0.00 0.00 37.29 4.00
1327 2983 1.595993 CTCCCTCGACGCCTTCTTCA 61.596 60.000 0.00 0.00 0.00 3.02
1338 2994 1.667830 CTTCTTCAGGAACGCCGCA 60.668 57.895 0.00 0.00 39.96 5.69
1428 3090 2.464459 CCTCGCCAATCTGTTCGCC 61.464 63.158 0.00 0.00 0.00 5.54
1485 3147 2.815308 CTCGCGCAGTTCCCCTAT 59.185 61.111 8.75 0.00 0.00 2.57
1488 3150 1.069765 CGCGCAGTTCCCCTATGAT 59.930 57.895 8.75 0.00 0.00 2.45
1557 3219 3.414700 CTGTCCGACACCAAGCGC 61.415 66.667 0.00 0.00 0.00 5.92
1572 3234 2.035442 GCGCAGGTTCCTCAAGGAC 61.035 63.158 0.30 0.00 45.39 3.85
1917 3579 2.960659 CTCAGCTCGATGCAGGCG 60.961 66.667 5.48 5.48 45.94 5.52
2065 3727 3.425659 AGGGACTTCAATTTCAGCTTCC 58.574 45.455 0.00 0.00 27.25 3.46
2412 4074 1.141881 CATCTTCCAGGTCCGGACG 59.858 63.158 27.68 15.13 33.75 4.79
2520 4182 2.433664 GGCTTCACCGTGGTACCG 60.434 66.667 7.57 0.00 0.00 4.02
2603 4265 2.607457 CGTGAACCGGTTGTAGCAA 58.393 52.632 27.87 0.00 0.00 3.91
2626 4288 4.885325 ACAAATTAGAACCGTCCTGTTTGT 59.115 37.500 0.00 0.00 33.30 2.83
2627 4289 6.056884 ACAAATTAGAACCGTCCTGTTTGTA 58.943 36.000 2.64 0.00 34.80 2.41
2662 4340 0.034337 CGACGACTGGGGAGGAAAAA 59.966 55.000 0.00 0.00 0.00 1.94
2719 4397 4.802051 CCGGCTGGGGTGGTGATG 62.802 72.222 2.57 0.00 0.00 3.07
2720 4398 3.716195 CGGCTGGGGTGGTGATGA 61.716 66.667 0.00 0.00 0.00 2.92
2721 4399 2.763215 GGCTGGGGTGGTGATGAA 59.237 61.111 0.00 0.00 0.00 2.57
2788 4466 9.025020 GTAGCGATGTGATCATAATATAAGTGG 57.975 37.037 0.00 0.00 34.06 4.00
2790 4468 6.313658 GCGATGTGATCATAATATAAGTGGCA 59.686 38.462 0.00 0.00 34.06 4.92
2804 4483 1.880027 AGTGGCAATTTCAGTTCGGAC 59.120 47.619 0.00 0.00 0.00 4.79
2812 4491 2.691409 TTCAGTTCGGACCCATGATC 57.309 50.000 0.00 0.00 0.00 2.92
2818 4497 0.617535 TCGGACCCATGATCCAGTGT 60.618 55.000 14.29 0.00 35.83 3.55
2844 4523 2.615912 GCTGTCTTCTTGTCTTGCAGTT 59.384 45.455 0.00 0.00 0.00 3.16
2846 4525 4.787882 GCTGTCTTCTTGTCTTGCAGTTTC 60.788 45.833 0.00 0.00 0.00 2.78
2848 4527 4.572389 TGTCTTCTTGTCTTGCAGTTTCTC 59.428 41.667 0.00 0.00 0.00 2.87
2849 4528 4.813697 GTCTTCTTGTCTTGCAGTTTCTCT 59.186 41.667 0.00 0.00 0.00 3.10
2854 4533 7.194607 TCTTGTCTTGCAGTTTCTCTATTTG 57.805 36.000 0.00 0.00 0.00 2.32
2856 4535 4.216257 TGTCTTGCAGTTTCTCTATTTGCC 59.784 41.667 0.00 0.00 33.98 4.52
2863 4542 2.427095 GTTTCTCTATTTGCCCGGCATT 59.573 45.455 14.30 6.77 38.76 3.56
2881 4579 5.300969 GCATTCTTGCTCAATGTCAAGTA 57.699 39.130 13.95 8.11 45.77 2.24
2883 4581 5.106396 GCATTCTTGCTCAATGTCAAGTACT 60.106 40.000 13.95 0.00 45.77 2.73
2887 4585 6.233434 TCTTGCTCAATGTCAAGTACTGATT 58.767 36.000 0.00 0.00 40.27 2.57
2889 4587 7.547019 TCTTGCTCAATGTCAAGTACTGATTAG 59.453 37.037 0.00 0.00 40.27 1.73
2890 4588 5.582269 TGCTCAATGTCAAGTACTGATTAGC 59.418 40.000 0.00 0.00 36.14 3.09
2892 4590 6.980978 GCTCAATGTCAAGTACTGATTAGCTA 59.019 38.462 0.00 0.00 36.14 3.32
2894 4592 8.877808 TCAATGTCAAGTACTGATTAGCTATG 57.122 34.615 0.00 0.00 36.14 2.23
2918 4639 2.476854 GCGTTCCACTTCATGAGCATTC 60.477 50.000 0.00 0.00 0.00 2.67
2922 4643 4.564782 TCCACTTCATGAGCATTCTCTT 57.435 40.909 0.00 0.00 40.03 2.85
2923 4644 4.511527 TCCACTTCATGAGCATTCTCTTC 58.488 43.478 0.00 0.00 40.03 2.87
2932 4653 3.204526 GAGCATTCTCTTCCTGATGGTG 58.795 50.000 0.00 0.00 36.42 4.17
2933 4654 2.575279 AGCATTCTCTTCCTGATGGTGT 59.425 45.455 0.00 0.00 34.23 4.16
2934 4655 3.776969 AGCATTCTCTTCCTGATGGTGTA 59.223 43.478 0.00 0.00 34.23 2.90
2935 4656 4.411540 AGCATTCTCTTCCTGATGGTGTAT 59.588 41.667 0.00 0.00 34.23 2.29
2936 4657 4.754114 GCATTCTCTTCCTGATGGTGTATC 59.246 45.833 0.00 0.00 36.29 2.24
2937 4658 5.685861 GCATTCTCTTCCTGATGGTGTATCA 60.686 44.000 0.00 0.00 43.40 2.15
2938 4659 5.344743 TTCTCTTCCTGATGGTGTATCAC 57.655 43.478 0.00 0.00 40.82 3.06
2954 4675 7.656707 GTGTATCACCAAATTTGAGCATTTT 57.343 32.000 19.86 0.80 0.00 1.82
2955 4676 7.732664 GTGTATCACCAAATTTGAGCATTTTC 58.267 34.615 19.86 4.05 0.00 2.29
2956 4677 7.599998 GTGTATCACCAAATTTGAGCATTTTCT 59.400 33.333 19.86 0.00 0.00 2.52
2957 4678 8.149647 TGTATCACCAAATTTGAGCATTTTCTT 58.850 29.630 19.86 0.00 0.00 2.52
2958 4679 8.992073 GTATCACCAAATTTGAGCATTTTCTTT 58.008 29.630 19.86 0.00 0.00 2.52
2959 4680 7.481275 TCACCAAATTTGAGCATTTTCTTTC 57.519 32.000 19.86 0.00 0.00 2.62
2960 4681 7.274447 TCACCAAATTTGAGCATTTTCTTTCT 58.726 30.769 19.86 0.00 0.00 2.52
2961 4682 7.225145 TCACCAAATTTGAGCATTTTCTTTCTG 59.775 33.333 19.86 0.00 0.00 3.02
2962 4683 7.225145 CACCAAATTTGAGCATTTTCTTTCTGA 59.775 33.333 19.86 0.00 0.00 3.27
2963 4684 7.225341 ACCAAATTTGAGCATTTTCTTTCTGAC 59.775 33.333 19.86 0.00 0.00 3.51
2964 4685 6.998258 AATTTGAGCATTTTCTTTCTGACG 57.002 33.333 0.00 0.00 0.00 4.35
2965 4686 4.488126 TTGAGCATTTTCTTTCTGACGG 57.512 40.909 0.00 0.00 0.00 4.79
2966 4687 3.476552 TGAGCATTTTCTTTCTGACGGT 58.523 40.909 0.00 0.00 0.00 4.83
2972 4693 3.462483 TTTCTTTCTGACGGTAGCACA 57.538 42.857 0.00 0.00 0.00 4.57
2974 4695 3.678056 TCTTTCTGACGGTAGCACAAT 57.322 42.857 0.00 0.00 0.00 2.71
2975 4696 4.002906 TCTTTCTGACGGTAGCACAATT 57.997 40.909 0.00 0.00 0.00 2.32
3009 4730 1.860950 CAGGTTCGTATGCAGATTCCG 59.139 52.381 0.00 0.00 0.00 4.30
3011 4732 2.167693 AGGTTCGTATGCAGATTCCGAA 59.832 45.455 1.65 1.65 35.42 4.30
3028 4749 2.212922 GAACTGCACGTTCGTTCATC 57.787 50.000 14.17 0.00 42.28 2.92
3029 4750 0.865769 AACTGCACGTTCGTTCATCC 59.134 50.000 0.00 0.00 0.00 3.51
3030 4751 1.282248 ACTGCACGTTCGTTCATCCG 61.282 55.000 0.00 0.00 0.00 4.18
3031 4752 1.955529 CTGCACGTTCGTTCATCCGG 61.956 60.000 0.00 0.00 0.00 5.14
3032 4753 2.025418 GCACGTTCGTTCATCCGGT 61.025 57.895 0.00 0.00 0.00 5.28
3033 4754 1.952266 GCACGTTCGTTCATCCGGTC 61.952 60.000 0.00 0.00 0.00 4.79
3035 4756 0.316204 ACGTTCGTTCATCCGGTCTT 59.684 50.000 0.00 0.00 0.00 3.01
3036 4757 0.989890 CGTTCGTTCATCCGGTCTTC 59.010 55.000 0.00 0.00 0.00 2.87
3038 4759 2.685100 GTTCGTTCATCCGGTCTTCTT 58.315 47.619 0.00 0.00 0.00 2.52
3041 4762 1.732259 CGTTCATCCGGTCTTCTTTGG 59.268 52.381 0.00 0.00 0.00 3.28
3042 4763 2.779506 GTTCATCCGGTCTTCTTTGGT 58.220 47.619 0.00 0.00 0.00 3.67
3044 4765 3.053831 TCATCCGGTCTTCTTTGGTTC 57.946 47.619 0.00 0.00 0.00 3.62
3045 4766 2.370519 TCATCCGGTCTTCTTTGGTTCA 59.629 45.455 0.00 0.00 0.00 3.18
3046 4767 3.009033 TCATCCGGTCTTCTTTGGTTCAT 59.991 43.478 0.00 0.00 0.00 2.57
3047 4768 2.778299 TCCGGTCTTCTTTGGTTCATG 58.222 47.619 0.00 0.00 0.00 3.07
3048 4769 1.812571 CCGGTCTTCTTTGGTTCATGG 59.187 52.381 0.00 0.00 0.00 3.66
3049 4770 1.812571 CGGTCTTCTTTGGTTCATGGG 59.187 52.381 0.00 0.00 0.00 4.00
3050 4771 2.552155 CGGTCTTCTTTGGTTCATGGGA 60.552 50.000 0.00 0.00 0.00 4.37
3051 4772 3.701664 GGTCTTCTTTGGTTCATGGGAT 58.298 45.455 0.00 0.00 0.00 3.85
3052 4773 4.625324 CGGTCTTCTTTGGTTCATGGGATA 60.625 45.833 0.00 0.00 0.00 2.59
3053 4774 4.884164 GGTCTTCTTTGGTTCATGGGATAG 59.116 45.833 0.00 0.00 0.00 2.08
3054 4775 4.884164 GTCTTCTTTGGTTCATGGGATAGG 59.116 45.833 0.00 0.00 0.00 2.57
3055 4776 4.788075 TCTTCTTTGGTTCATGGGATAGGA 59.212 41.667 0.00 0.00 0.00 2.94
3056 4777 5.252863 TCTTCTTTGGTTCATGGGATAGGAA 59.747 40.000 0.00 0.00 0.00 3.36
3057 4778 5.732331 TCTTTGGTTCATGGGATAGGAAT 57.268 39.130 0.00 0.00 30.99 3.01
3058 4779 6.091076 TCTTTGGTTCATGGGATAGGAATT 57.909 37.500 0.00 0.00 30.99 2.17
3059 4780 6.502138 TCTTTGGTTCATGGGATAGGAATTT 58.498 36.000 0.00 0.00 30.99 1.82
3060 4781 6.959366 TCTTTGGTTCATGGGATAGGAATTTT 59.041 34.615 0.00 0.00 30.99 1.82
3061 4782 7.457535 TCTTTGGTTCATGGGATAGGAATTTTT 59.542 33.333 0.00 0.00 30.99 1.94
3062 4783 6.790232 TGGTTCATGGGATAGGAATTTTTC 57.210 37.500 0.00 0.00 30.99 2.29
3063 4784 6.259893 TGGTTCATGGGATAGGAATTTTTCA 58.740 36.000 0.00 0.00 30.99 2.69
3064 4785 6.380846 TGGTTCATGGGATAGGAATTTTTCAG 59.619 38.462 0.00 0.00 30.99 3.02
3065 4786 6.183360 GGTTCATGGGATAGGAATTTTTCAGG 60.183 42.308 0.00 0.00 30.99 3.86
3066 4787 6.339999 TCATGGGATAGGAATTTTTCAGGA 57.660 37.500 0.00 0.00 0.00 3.86
3067 4788 6.740693 TCATGGGATAGGAATTTTTCAGGAA 58.259 36.000 0.00 0.00 0.00 3.36
3068 4789 7.364627 TCATGGGATAGGAATTTTTCAGGAAT 58.635 34.615 0.00 0.00 0.00 3.01
3069 4790 8.510283 TCATGGGATAGGAATTTTTCAGGAATA 58.490 33.333 0.00 0.00 0.00 1.75
3070 4791 8.800332 CATGGGATAGGAATTTTTCAGGAATAG 58.200 37.037 0.00 0.00 0.00 1.73
3071 4792 7.297614 TGGGATAGGAATTTTTCAGGAATAGG 58.702 38.462 0.00 0.00 0.00 2.57
3072 4793 7.130285 TGGGATAGGAATTTTTCAGGAATAGGA 59.870 37.037 0.00 0.00 0.00 2.94
3073 4794 8.004801 GGGATAGGAATTTTTCAGGAATAGGAA 58.995 37.037 0.00 0.00 0.00 3.36
3074 4795 9.421399 GGATAGGAATTTTTCAGGAATAGGAAA 57.579 33.333 0.00 0.00 0.00 3.13
3078 4799 9.325248 AGGAATTTTTCAGGAATAGGAAAATCA 57.675 29.630 0.00 0.00 41.20 2.57
3083 4804 9.989296 TTTTTCAGGAATAGGAAAATCATAGGA 57.011 29.630 0.00 0.00 41.20 2.94
3084 4805 9.632638 TTTTCAGGAATAGGAAAATCATAGGAG 57.367 33.333 0.00 0.00 37.90 3.69
3085 4806 7.321717 TCAGGAATAGGAAAATCATAGGAGG 57.678 40.000 0.00 0.00 0.00 4.30
3086 4807 6.851836 TCAGGAATAGGAAAATCATAGGAGGT 59.148 38.462 0.00 0.00 0.00 3.85
3087 4808 6.939163 CAGGAATAGGAAAATCATAGGAGGTG 59.061 42.308 0.00 0.00 0.00 4.00
3088 4809 6.851836 AGGAATAGGAAAATCATAGGAGGTGA 59.148 38.462 0.00 0.00 0.00 4.02
3089 4810 7.017056 AGGAATAGGAAAATCATAGGAGGTGAG 59.983 40.741 0.00 0.00 0.00 3.51
3090 4811 7.016661 GGAATAGGAAAATCATAGGAGGTGAGA 59.983 40.741 0.00 0.00 0.00 3.27
3091 4812 8.517323 AATAGGAAAATCATAGGAGGTGAGAT 57.483 34.615 0.00 0.00 0.00 2.75
3092 4813 6.185114 AGGAAAATCATAGGAGGTGAGATG 57.815 41.667 0.00 0.00 0.00 2.90
3093 4814 5.907662 AGGAAAATCATAGGAGGTGAGATGA 59.092 40.000 0.00 0.00 33.09 2.92
3094 4815 5.994668 GGAAAATCATAGGAGGTGAGATGAC 59.005 44.000 0.00 0.00 31.41 3.06
3095 4816 6.408548 GGAAAATCATAGGAGGTGAGATGACA 60.409 42.308 0.00 0.00 31.41 3.58
3096 4817 6.760440 AAATCATAGGAGGTGAGATGACAT 57.240 37.500 0.00 0.00 31.41 3.06
3097 4818 5.741962 ATCATAGGAGGTGAGATGACATG 57.258 43.478 0.00 0.00 31.41 3.21
3098 4819 3.323115 TCATAGGAGGTGAGATGACATGC 59.677 47.826 0.00 0.00 0.00 4.06
3099 4820 1.576577 AGGAGGTGAGATGACATGCA 58.423 50.000 0.00 0.00 0.00 3.96
3100 4821 2.125233 AGGAGGTGAGATGACATGCAT 58.875 47.619 0.00 0.00 40.77 3.96
3137 4858 7.223260 AGAAAAAGAGATGTCATTTGATGCA 57.777 32.000 0.00 0.00 0.00 3.96
3138 4859 7.837863 AGAAAAAGAGATGTCATTTGATGCAT 58.162 30.769 0.00 0.00 32.43 3.96
3139 4860 8.963725 AGAAAAAGAGATGTCATTTGATGCATA 58.036 29.630 0.00 0.00 30.80 3.14
3140 4861 9.234384 GAAAAAGAGATGTCATTTGATGCATAG 57.766 33.333 0.00 0.00 30.80 2.23
3141 4862 6.879276 AAGAGATGTCATTTGATGCATAGG 57.121 37.500 0.00 0.00 30.80 2.57
3142 4863 6.183810 AGAGATGTCATTTGATGCATAGGA 57.816 37.500 0.00 0.00 30.80 2.94
3143 4864 6.780901 AGAGATGTCATTTGATGCATAGGAT 58.219 36.000 0.00 0.00 30.80 3.24
3144 4865 7.914859 AGAGATGTCATTTGATGCATAGGATA 58.085 34.615 0.00 0.00 30.80 2.59
3145 4866 8.041919 AGAGATGTCATTTGATGCATAGGATAG 58.958 37.037 0.00 0.00 30.80 2.08
3146 4867 7.110810 AGATGTCATTTGATGCATAGGATAGG 58.889 38.462 0.00 0.00 30.80 2.57
3147 4868 6.438186 TGTCATTTGATGCATAGGATAGGA 57.562 37.500 0.00 0.00 0.00 2.94
3148 4869 6.840527 TGTCATTTGATGCATAGGATAGGAA 58.159 36.000 0.00 0.00 0.00 3.36
3149 4870 7.464273 TGTCATTTGATGCATAGGATAGGAAT 58.536 34.615 0.00 0.00 0.00 3.01
3150 4871 7.946219 TGTCATTTGATGCATAGGATAGGAATT 59.054 33.333 0.00 0.00 0.00 2.17
3151 4872 8.800332 GTCATTTGATGCATAGGATAGGAATTT 58.200 33.333 0.00 0.00 0.00 1.82
3152 4873 9.370930 TCATTTGATGCATAGGATAGGAATTTT 57.629 29.630 0.00 0.00 0.00 1.82
3153 4874 9.991906 CATTTGATGCATAGGATAGGAATTTTT 57.008 29.630 0.00 0.00 0.00 1.94
3174 4895 8.635765 TTTTTCCATTGAGTCTTAGCTAATGT 57.364 30.769 6.64 0.00 0.00 2.71
3175 4896 8.635765 TTTTCCATTGAGTCTTAGCTAATGTT 57.364 30.769 6.64 0.00 0.00 2.71
3176 4897 8.635765 TTTCCATTGAGTCTTAGCTAATGTTT 57.364 30.769 6.64 0.00 0.00 2.83
3177 4898 8.635765 TTCCATTGAGTCTTAGCTAATGTTTT 57.364 30.769 6.64 0.00 0.00 2.43
3178 4899 8.635765 TCCATTGAGTCTTAGCTAATGTTTTT 57.364 30.769 6.64 0.00 0.00 1.94
3206 4927 8.511604 TCTCTAAAATGTGAAGGATTGATTCC 57.488 34.615 0.00 0.00 45.85 3.01
3219 4940 6.210287 GGATTGATTCCTATCCTACGTAGG 57.790 45.833 32.05 32.05 42.06 3.18
3233 4954 6.607004 CCTACGTAGGAATAGGAATCCATT 57.393 41.667 33.93 0.00 46.63 3.16
3234 4955 6.631962 CCTACGTAGGAATAGGAATCCATTC 58.368 44.000 33.93 8.71 46.63 2.67
3250 4971 8.926715 GAATCCATTCCTACAAACCAAATAAC 57.073 34.615 0.00 0.00 0.00 1.89
3251 4972 8.664669 AATCCATTCCTACAAACCAAATAACT 57.335 30.769 0.00 0.00 0.00 2.24
3252 4973 8.664669 ATCCATTCCTACAAACCAAATAACTT 57.335 30.769 0.00 0.00 0.00 2.66
3253 4974 8.117813 TCCATTCCTACAAACCAAATAACTTC 57.882 34.615 0.00 0.00 0.00 3.01
3254 4975 7.726291 TCCATTCCTACAAACCAAATAACTTCA 59.274 33.333 0.00 0.00 0.00 3.02
3255 4976 8.364142 CCATTCCTACAAACCAAATAACTTCAA 58.636 33.333 0.00 0.00 0.00 2.69
3256 4977 9.757227 CATTCCTACAAACCAAATAACTTCAAA 57.243 29.630 0.00 0.00 0.00 2.69
3257 4978 9.981114 ATTCCTACAAACCAAATAACTTCAAAG 57.019 29.630 0.00 0.00 0.00 2.77
3258 4979 8.754991 TCCTACAAACCAAATAACTTCAAAGA 57.245 30.769 0.00 0.00 0.00 2.52
3259 4980 9.191479 TCCTACAAACCAAATAACTTCAAAGAA 57.809 29.630 0.00 0.00 0.00 2.52
3260 4981 9.810545 CCTACAAACCAAATAACTTCAAAGAAA 57.189 29.630 0.00 0.00 0.00 2.52
3316 5037 9.981114 AACCTATGAAATTTCTACAAACCAAAG 57.019 29.630 18.64 2.57 0.00 2.77
3317 5038 9.362151 ACCTATGAAATTTCTACAAACCAAAGA 57.638 29.630 18.64 0.00 0.00 2.52
3321 5042 6.983890 TGAAATTTCTACAAACCAAAGAAGGC 59.016 34.615 18.64 0.00 31.30 4.35
3329 5050 4.898861 ACAAACCAAAGAAGGCCTTGAATA 59.101 37.500 26.25 0.00 34.79 1.75
3344 5065 5.452636 GCCTTGAATAGTGTTTTTGTTCCCA 60.453 40.000 0.00 0.00 0.00 4.37
3345 5066 6.741240 GCCTTGAATAGTGTTTTTGTTCCCAT 60.741 38.462 0.00 0.00 0.00 4.00
3346 5067 7.216494 CCTTGAATAGTGTTTTTGTTCCCATT 58.784 34.615 0.00 0.00 0.00 3.16
3347 5068 7.714813 CCTTGAATAGTGTTTTTGTTCCCATTT 59.285 33.333 0.00 0.00 0.00 2.32
3348 5069 9.108284 CTTGAATAGTGTTTTTGTTCCCATTTT 57.892 29.630 0.00 0.00 0.00 1.82
3349 5070 8.655651 TGAATAGTGTTTTTGTTCCCATTTTC 57.344 30.769 0.00 0.00 0.00 2.29
3350 5071 7.436673 TGAATAGTGTTTTTGTTCCCATTTTCG 59.563 33.333 0.00 0.00 0.00 3.46
3351 5072 5.079689 AGTGTTTTTGTTCCCATTTTCGT 57.920 34.783 0.00 0.00 0.00 3.85
3352 5073 5.483811 AGTGTTTTTGTTCCCATTTTCGTT 58.516 33.333 0.00 0.00 0.00 3.85
3353 5074 5.579119 AGTGTTTTTGTTCCCATTTTCGTTC 59.421 36.000 0.00 0.00 0.00 3.95
3354 5075 5.348997 GTGTTTTTGTTCCCATTTTCGTTCA 59.651 36.000 0.00 0.00 0.00 3.18
3355 5076 6.036626 GTGTTTTTGTTCCCATTTTCGTTCAT 59.963 34.615 0.00 0.00 0.00 2.57
3356 5077 6.256757 TGTTTTTGTTCCCATTTTCGTTCATC 59.743 34.615 0.00 0.00 0.00 2.92
3358 5079 2.486203 TGTTCCCATTTTCGTTCATCCG 59.514 45.455 0.00 0.00 0.00 4.18
3375 5097 7.849026 CGTTCATCCGGTAACAATAATAAACTG 59.151 37.037 0.00 0.00 0.00 3.16
3399 5121 3.533606 TTGGTTGTTTGTTGATGTGGG 57.466 42.857 0.00 0.00 0.00 4.61
3430 5152 1.523934 CGTACGTTGGAACTTGTGACC 59.476 52.381 7.22 0.00 0.00 4.02
3465 5187 1.682344 GTTGGATCCCCTTGGTGGC 60.682 63.158 9.90 0.00 0.00 5.01
3504 5226 5.649782 AAAAAGTATGCCATCACAAGGAG 57.350 39.130 0.00 0.00 0.00 3.69
3552 5274 1.329171 TGCTGCTGGCCTGTTTGTTT 61.329 50.000 11.69 0.00 40.92 2.83
3553 5275 0.673437 GCTGCTGGCCTGTTTGTTTA 59.327 50.000 11.69 0.00 34.27 2.01
3554 5276 1.602920 GCTGCTGGCCTGTTTGTTTAC 60.603 52.381 11.69 0.00 34.27 2.01
3555 5277 0.665835 TGCTGGCCTGTTTGTTTACG 59.334 50.000 11.69 0.00 0.00 3.18
3556 5278 0.663269 GCTGGCCTGTTTGTTTACGC 60.663 55.000 11.69 0.00 0.00 4.42
3557 5279 0.665835 CTGGCCTGTTTGTTTACGCA 59.334 50.000 3.32 0.00 0.00 5.24
3558 5280 0.382515 TGGCCTGTTTGTTTACGCAC 59.617 50.000 3.32 0.00 0.00 5.34
3559 5281 0.382515 GGCCTGTTTGTTTACGCACA 59.617 50.000 0.00 0.00 0.00 4.57
3560 5282 1.472990 GCCTGTTTGTTTACGCACAC 58.527 50.000 0.00 0.00 0.00 3.82
3562 5284 1.595976 CCTGTTTGTTTACGCACACGG 60.596 52.381 0.00 0.00 46.04 4.94
3563 5285 0.248134 TGTTTGTTTACGCACACGGC 60.248 50.000 0.00 0.00 46.04 5.68
3572 5294 4.501714 GCACACGGCGATACGGGA 62.502 66.667 16.62 0.00 40.35 5.14
3573 5295 2.278596 CACACGGCGATACGGGAG 60.279 66.667 16.62 0.00 40.35 4.30
3574 5296 4.203076 ACACGGCGATACGGGAGC 62.203 66.667 16.62 0.00 40.35 4.70
3575 5297 4.201679 CACGGCGATACGGGAGCA 62.202 66.667 16.62 0.00 40.35 4.26
3576 5298 3.454573 ACGGCGATACGGGAGCAA 61.455 61.111 16.62 0.00 38.39 3.91
3577 5299 2.658593 CGGCGATACGGGAGCAAG 60.659 66.667 0.00 0.00 0.00 4.01
3578 5300 2.812499 GGCGATACGGGAGCAAGA 59.188 61.111 0.00 0.00 0.00 3.02
3579 5301 1.591863 GGCGATACGGGAGCAAGAC 60.592 63.158 0.00 0.00 0.00 3.01
3580 5302 1.141019 GCGATACGGGAGCAAGACA 59.859 57.895 0.00 0.00 0.00 3.41
3581 5303 0.459585 GCGATACGGGAGCAAGACAA 60.460 55.000 0.00 0.00 0.00 3.18
3582 5304 2.004583 CGATACGGGAGCAAGACAAA 57.995 50.000 0.00 0.00 0.00 2.83
3583 5305 2.550978 CGATACGGGAGCAAGACAAAT 58.449 47.619 0.00 0.00 0.00 2.32
3584 5306 2.285220 CGATACGGGAGCAAGACAAATG 59.715 50.000 0.00 0.00 0.00 2.32
3585 5307 1.448985 TACGGGAGCAAGACAAATGC 58.551 50.000 0.00 0.00 44.15 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.530910 AAACACCCGCCGAGAGTGG 62.531 63.158 6.79 0.00 46.61 4.00
3 4 2.030562 AAACACCCGCCGAGAGTG 59.969 61.111 0.00 0.00 37.53 3.51
4 5 2.030562 CAAACACCCGCCGAGAGT 59.969 61.111 0.00 0.00 0.00 3.24
5 6 2.742372 CCAAACACCCGCCGAGAG 60.742 66.667 0.00 0.00 0.00 3.20
6 7 2.999739 GAACCAAACACCCGCCGAGA 63.000 60.000 0.00 0.00 0.00 4.04
7 8 2.593436 AACCAAACACCCGCCGAG 60.593 61.111 0.00 0.00 0.00 4.63
8 9 2.592287 GAACCAAACACCCGCCGA 60.592 61.111 0.00 0.00 0.00 5.54
9 10 3.666253 GGAACCAAACACCCGCCG 61.666 66.667 0.00 0.00 0.00 6.46
10 11 1.468506 AATGGAACCAAACACCCGCC 61.469 55.000 0.00 0.00 0.00 6.13
11 12 0.319469 CAATGGAACCAAACACCCGC 60.319 55.000 0.00 0.00 0.00 6.13
12 13 0.319469 GCAATGGAACCAAACACCCG 60.319 55.000 0.00 0.00 0.00 5.28
13 14 0.034756 GGCAATGGAACCAAACACCC 59.965 55.000 0.00 0.00 0.00 4.61
14 15 0.755686 TGGCAATGGAACCAAACACC 59.244 50.000 0.00 0.00 31.46 4.16
15 16 2.611225 TTGGCAATGGAACCAAACAC 57.389 45.000 0.00 0.00 42.87 3.32
19 20 1.067821 GAACGTTGGCAATGGAACCAA 59.932 47.619 22.48 0.00 43.59 3.67
20 21 0.671251 GAACGTTGGCAATGGAACCA 59.329 50.000 22.48 0.00 0.00 3.67
21 22 0.386731 CGAACGTTGGCAATGGAACC 60.387 55.000 22.48 8.13 0.00 3.62
22 23 0.386731 CCGAACGTTGGCAATGGAAC 60.387 55.000 22.48 12.14 0.00 3.62
23 24 1.953017 CCGAACGTTGGCAATGGAA 59.047 52.632 22.48 0.00 0.00 3.53
24 25 3.661911 CCGAACGTTGGCAATGGA 58.338 55.556 22.48 0.00 0.00 3.41
42 43 4.622456 AAAAAGGTGCACGGCGCG 62.622 61.111 11.45 0.00 46.97 6.86
58 59 6.339587 ACAACACAACTGGAAGAAGAAAAA 57.660 33.333 0.00 0.00 37.43 1.94
59 60 5.975693 ACAACACAACTGGAAGAAGAAAA 57.024 34.783 0.00 0.00 37.43 2.29
60 61 5.975693 AACAACACAACTGGAAGAAGAAA 57.024 34.783 0.00 0.00 37.43 2.52
61 62 5.975693 AAACAACACAACTGGAAGAAGAA 57.024 34.783 0.00 0.00 37.43 2.52
62 63 5.336372 CCAAAACAACACAACTGGAAGAAGA 60.336 40.000 0.00 0.00 37.43 2.87
63 64 4.864247 CCAAAACAACACAACTGGAAGAAG 59.136 41.667 0.00 0.00 37.43 2.85
64 65 4.815269 CCAAAACAACACAACTGGAAGAA 58.185 39.130 0.00 0.00 37.43 2.52
65 66 3.367910 GCCAAAACAACACAACTGGAAGA 60.368 43.478 0.00 0.00 37.43 2.87
66 67 2.929398 GCCAAAACAACACAACTGGAAG 59.071 45.455 0.00 0.00 42.29 3.46
149 150 2.440796 CCCCTCGCTACCACCGTA 60.441 66.667 0.00 0.00 0.00 4.02
156 157 3.971109 AAAAGCCGCCCCTCGCTAC 62.971 63.158 0.00 0.00 36.73 3.58
178 179 2.629210 CCGCGCTCGTGTCAAAAA 59.371 55.556 5.56 0.00 0.00 1.94
290 291 2.650608 GCATTGAACCGTTGAACTCAC 58.349 47.619 0.00 0.00 0.00 3.51
336 364 2.416260 GTCATCTCCCGGGTACGC 59.584 66.667 22.86 3.52 39.22 4.42
346 374 2.357637 CTCCTCTTGTCTCCGTCATCTC 59.642 54.545 0.00 0.00 0.00 2.75
373 401 2.917227 AAAAACTGGGGCAGGCGG 60.917 61.111 0.00 0.00 35.51 6.13
401 429 6.183361 ACTGATAAATAGGTGCTGGATGTCAT 60.183 38.462 0.00 0.00 0.00 3.06
403 431 5.615289 ACTGATAAATAGGTGCTGGATGTC 58.385 41.667 0.00 0.00 0.00 3.06
404 432 5.636903 ACTGATAAATAGGTGCTGGATGT 57.363 39.130 0.00 0.00 0.00 3.06
447 475 9.014297 CAAACCAAATCTAGGAACTGATAAAGT 57.986 33.333 0.00 0.00 41.52 2.66
448 476 9.014297 ACAAACCAAATCTAGGAACTGATAAAG 57.986 33.333 0.00 0.00 41.52 1.85
489 517 1.322442 GTGCAAAAGAAGAGGCCACT 58.678 50.000 5.01 0.00 0.00 4.00
490 518 0.040067 CGTGCAAAAGAAGAGGCCAC 60.040 55.000 5.01 0.00 0.00 5.01
491 519 0.179032 TCGTGCAAAAGAAGAGGCCA 60.179 50.000 5.01 0.00 0.00 5.36
492 520 0.951558 TTCGTGCAAAAGAAGAGGCC 59.048 50.000 0.00 0.00 0.00 5.19
493 521 2.226437 TGATTCGTGCAAAAGAAGAGGC 59.774 45.455 0.00 0.00 0.00 4.70
494 522 4.488126 TTGATTCGTGCAAAAGAAGAGG 57.512 40.909 0.00 0.00 0.00 3.69
505 533 5.465935 TCAAGGGTAAAAATTGATTCGTGC 58.534 37.500 0.00 0.00 0.00 5.34
525 553 8.137437 CAGCCAGAAGAAAAGAAATTTACTCAA 58.863 33.333 0.00 0.00 0.00 3.02
526 554 7.255590 CCAGCCAGAAGAAAAGAAATTTACTCA 60.256 37.037 0.00 0.00 0.00 3.41
527 555 7.040409 TCCAGCCAGAAGAAAAGAAATTTACTC 60.040 37.037 0.00 0.00 0.00 2.59
528 556 6.777580 TCCAGCCAGAAGAAAAGAAATTTACT 59.222 34.615 0.00 0.00 0.00 2.24
529 557 6.981722 TCCAGCCAGAAGAAAAGAAATTTAC 58.018 36.000 0.00 0.00 0.00 2.01
530 558 7.595819 TTCCAGCCAGAAGAAAAGAAATTTA 57.404 32.000 0.00 0.00 0.00 1.40
531 559 6.484364 TTCCAGCCAGAAGAAAAGAAATTT 57.516 33.333 0.00 0.00 0.00 1.82
532 560 6.094193 CTTCCAGCCAGAAGAAAAGAAATT 57.906 37.500 7.41 0.00 45.08 1.82
533 561 5.718724 CTTCCAGCCAGAAGAAAAGAAAT 57.281 39.130 7.41 0.00 45.08 2.17
555 2189 5.803020 AGCTTTGACGGTAAGAATTCATC 57.197 39.130 8.44 0.00 0.00 2.92
585 2219 1.140252 AGGTAGGCACAAACAGTCGTT 59.860 47.619 0.00 0.00 36.73 3.85
587 2221 1.000955 AGAGGTAGGCACAAACAGTCG 59.999 52.381 0.00 0.00 0.00 4.18
589 2223 2.302157 GGTAGAGGTAGGCACAAACAGT 59.698 50.000 0.00 0.00 0.00 3.55
590 2224 2.674177 CGGTAGAGGTAGGCACAAACAG 60.674 54.545 0.00 0.00 0.00 3.16
591 2225 1.274167 CGGTAGAGGTAGGCACAAACA 59.726 52.381 0.00 0.00 0.00 2.83
592 2226 2.005560 GCGGTAGAGGTAGGCACAAAC 61.006 57.143 0.00 0.00 0.00 2.93
593 2227 0.248289 GCGGTAGAGGTAGGCACAAA 59.752 55.000 0.00 0.00 0.00 2.83
594 2228 0.901114 TGCGGTAGAGGTAGGCACAA 60.901 55.000 0.00 0.00 0.00 3.33
597 2231 1.399744 CCATGCGGTAGAGGTAGGCA 61.400 60.000 0.00 0.00 38.09 4.75
598 2232 1.367840 CCATGCGGTAGAGGTAGGC 59.632 63.158 0.00 0.00 0.00 3.93
599 2233 0.389391 CACCATGCGGTAGAGGTAGG 59.611 60.000 0.00 0.00 46.94 3.18
600 2234 1.067212 GACACCATGCGGTAGAGGTAG 59.933 57.143 0.00 0.00 46.94 3.18
601 2235 1.108776 GACACCATGCGGTAGAGGTA 58.891 55.000 0.00 0.00 46.94 3.08
603 2237 0.465705 ATGACACCATGCGGTAGAGG 59.534 55.000 0.00 0.00 46.94 3.69
604 2238 1.858091 GATGACACCATGCGGTAGAG 58.142 55.000 0.00 0.00 46.94 2.43
607 2241 1.142965 CCGATGACACCATGCGGTA 59.857 57.895 0.00 0.00 46.94 4.02
609 2243 0.875908 CTACCGATGACACCATGCGG 60.876 60.000 0.00 0.00 43.07 5.69
611 2245 0.464036 TCCTACCGATGACACCATGC 59.536 55.000 0.00 0.00 32.09 4.06
612 2246 1.539065 GCTCCTACCGATGACACCATG 60.539 57.143 0.00 0.00 32.09 3.66
613 2247 0.753262 GCTCCTACCGATGACACCAT 59.247 55.000 0.00 0.00 35.29 3.55
635 2278 2.813474 GCGTATCACTGTGCCGCA 60.813 61.111 24.05 0.00 43.53 5.69
638 2281 2.505498 CGACGCGTATCACTGTGCC 61.505 63.158 13.97 0.00 0.00 5.01
646 2289 2.959599 TGCATGCCGACGCGTATC 60.960 61.111 13.97 4.64 38.08 2.24
969 2612 3.474570 CTCCCCTCCAGCTTCCCG 61.475 72.222 0.00 0.00 0.00 5.14
1195 2851 4.185059 GTCGTAGTCGTCCCCGGC 62.185 72.222 0.00 0.00 39.53 6.13
1327 2983 1.816863 TTCTTCTCTGCGGCGTTCCT 61.817 55.000 9.37 0.00 0.00 3.36
1329 2985 1.355066 CCTTCTTCTCTGCGGCGTTC 61.355 60.000 9.37 0.00 0.00 3.95
1338 2994 3.775654 CCGGCGGCCTTCTTCTCT 61.776 66.667 15.42 0.00 0.00 3.10
1485 3147 1.153107 CTGAATGGCCTCCGCATCA 60.153 57.895 3.32 0.00 36.38 3.07
1488 3150 2.268920 GACTGAATGGCCTCCGCA 59.731 61.111 3.32 0.00 36.38 5.69
1699 3361 2.496817 GAGCTCCGCATCCTTCGT 59.503 61.111 0.87 0.00 0.00 3.85
1701 3363 1.590259 GTCGAGCTCCGCATCCTTC 60.590 63.158 8.47 0.00 38.37 3.46
1917 3579 4.176752 GTCAGATCCCACCCGGCC 62.177 72.222 0.00 0.00 0.00 6.13
1920 3582 4.530857 GCGGTCAGATCCCACCCG 62.531 72.222 5.30 5.87 41.50 5.28
2065 3727 1.030488 TAGAACTCCCGCTCGTCCAG 61.030 60.000 0.00 0.00 0.00 3.86
2520 4182 2.186125 CGGCCGACTCTAAACCCC 59.814 66.667 24.07 0.00 0.00 4.95
2590 4252 4.391155 TCTAATTTGTTGCTACAACCGGT 58.609 39.130 13.36 0.00 43.66 5.28
2591 4253 5.151389 GTTCTAATTTGTTGCTACAACCGG 58.849 41.667 13.36 0.00 43.66 5.28
2592 4254 5.151389 GGTTCTAATTTGTTGCTACAACCG 58.849 41.667 13.36 3.07 43.66 4.44
2593 4255 5.151389 CGGTTCTAATTTGTTGCTACAACC 58.849 41.667 13.36 9.25 43.66 3.77
2594 4256 5.754778 ACGGTTCTAATTTGTTGCTACAAC 58.245 37.500 13.36 3.52 43.66 3.32
2595 4257 5.049267 GGACGGTTCTAATTTGTTGCTACAA 60.049 40.000 9.74 9.74 42.34 2.41
2596 4258 4.453136 GGACGGTTCTAATTTGTTGCTACA 59.547 41.667 0.00 0.00 0.00 2.74
2597 4259 4.694037 AGGACGGTTCTAATTTGTTGCTAC 59.306 41.667 0.00 0.00 0.00 3.58
2598 4260 4.693566 CAGGACGGTTCTAATTTGTTGCTA 59.306 41.667 0.00 0.00 0.00 3.49
2599 4261 3.502211 CAGGACGGTTCTAATTTGTTGCT 59.498 43.478 0.00 0.00 0.00 3.91
2600 4262 3.252458 ACAGGACGGTTCTAATTTGTTGC 59.748 43.478 0.00 0.00 0.00 4.17
2603 4265 4.885325 ACAAACAGGACGGTTCTAATTTGT 59.115 37.500 18.52 18.52 34.95 2.83
2638 4316 3.036783 CTCCCCAGTCGTCGTCGTC 62.037 68.421 1.33 0.00 38.33 4.20
2639 4317 3.054503 CTCCCCAGTCGTCGTCGT 61.055 66.667 1.33 0.00 38.33 4.34
2640 4318 3.812019 CCTCCCCAGTCGTCGTCG 61.812 72.222 0.00 0.00 38.55 5.12
2716 4394 2.947652 CACCACCACCATGATCTTCATC 59.052 50.000 0.00 0.00 34.28 2.92
2717 4395 2.357465 CCACCACCACCATGATCTTCAT 60.357 50.000 0.00 0.00 37.65 2.57
2718 4396 1.004628 CCACCACCACCATGATCTTCA 59.995 52.381 0.00 0.00 0.00 3.02
2719 4397 1.683011 CCCACCACCACCATGATCTTC 60.683 57.143 0.00 0.00 0.00 2.87
2720 4398 0.332632 CCCACCACCACCATGATCTT 59.667 55.000 0.00 0.00 0.00 2.40
2721 4399 1.574526 CCCCACCACCACCATGATCT 61.575 60.000 0.00 0.00 0.00 2.75
2788 4466 1.243902 TGGGTCCGAACTGAAATTGC 58.756 50.000 0.00 0.00 0.00 3.56
2790 4468 3.433306 TCATGGGTCCGAACTGAAATT 57.567 42.857 0.00 0.00 0.00 1.82
2804 4483 1.747355 GCAAGAACACTGGATCATGGG 59.253 52.381 0.00 0.00 0.00 4.00
2812 4491 2.843701 AGAAGACAGCAAGAACACTGG 58.156 47.619 0.00 0.00 38.25 4.00
2818 4497 3.313526 GCAAGACAAGAAGACAGCAAGAA 59.686 43.478 0.00 0.00 0.00 2.52
2844 4523 2.092429 AGAATGCCGGGCAAATAGAGAA 60.092 45.455 27.70 0.00 43.62 2.87
2846 4525 1.972872 AGAATGCCGGGCAAATAGAG 58.027 50.000 27.70 0.00 43.62 2.43
2848 4527 2.497107 CAAGAATGCCGGGCAAATAG 57.503 50.000 27.70 11.36 43.62 1.73
2863 4542 5.213891 TCAGTACTTGACATTGAGCAAGA 57.786 39.130 21.79 9.62 43.11 3.02
2873 4552 6.220726 TGCATAGCTAATCAGTACTTGACA 57.779 37.500 0.00 0.00 38.99 3.58
2875 4554 5.292765 GCTGCATAGCTAATCAGTACTTGA 58.707 41.667 20.08 0.00 46.57 3.02
2876 4555 5.588568 GCTGCATAGCTAATCAGTACTTG 57.411 43.478 20.08 4.66 46.57 3.16
2905 4626 4.767478 TCAGGAAGAGAATGCTCATGAAG 58.233 43.478 2.79 0.00 43.81 3.02
2932 4653 8.538409 AAGAAAATGCTCAAATTTGGTGATAC 57.462 30.769 17.90 4.25 30.21 2.24
2933 4654 9.206870 GAAAGAAAATGCTCAAATTTGGTGATA 57.793 29.630 17.90 0.00 30.21 2.15
2934 4655 7.935210 AGAAAGAAAATGCTCAAATTTGGTGAT 59.065 29.630 17.90 4.88 30.21 3.06
2935 4656 7.225145 CAGAAAGAAAATGCTCAAATTTGGTGA 59.775 33.333 17.90 2.72 30.21 4.02
2936 4657 7.225145 TCAGAAAGAAAATGCTCAAATTTGGTG 59.775 33.333 17.90 11.99 30.21 4.17
2937 4658 7.225341 GTCAGAAAGAAAATGCTCAAATTTGGT 59.775 33.333 17.90 0.02 30.21 3.67
2938 4659 7.568134 CGTCAGAAAGAAAATGCTCAAATTTGG 60.568 37.037 17.90 9.84 30.21 3.28
2939 4660 7.278629 CGTCAGAAAGAAAATGCTCAAATTTG 58.721 34.615 12.15 12.15 30.21 2.32
2940 4661 6.421801 CCGTCAGAAAGAAAATGCTCAAATTT 59.578 34.615 0.00 0.00 0.00 1.82
2941 4662 5.922544 CCGTCAGAAAGAAAATGCTCAAATT 59.077 36.000 0.00 0.00 0.00 1.82
2942 4663 5.010012 ACCGTCAGAAAGAAAATGCTCAAAT 59.990 36.000 0.00 0.00 0.00 2.32
2943 4664 4.338118 ACCGTCAGAAAGAAAATGCTCAAA 59.662 37.500 0.00 0.00 0.00 2.69
2944 4665 3.882888 ACCGTCAGAAAGAAAATGCTCAA 59.117 39.130 0.00 0.00 0.00 3.02
2945 4666 3.476552 ACCGTCAGAAAGAAAATGCTCA 58.523 40.909 0.00 0.00 0.00 4.26
2946 4667 4.436183 GCTACCGTCAGAAAGAAAATGCTC 60.436 45.833 0.00 0.00 0.00 4.26
2947 4668 3.437049 GCTACCGTCAGAAAGAAAATGCT 59.563 43.478 0.00 0.00 0.00 3.79
2948 4669 3.188460 TGCTACCGTCAGAAAGAAAATGC 59.812 43.478 0.00 0.00 0.00 3.56
2949 4670 4.213270 TGTGCTACCGTCAGAAAGAAAATG 59.787 41.667 0.00 0.00 0.00 2.32
2950 4671 4.385825 TGTGCTACCGTCAGAAAGAAAAT 58.614 39.130 0.00 0.00 0.00 1.82
2951 4672 3.799366 TGTGCTACCGTCAGAAAGAAAA 58.201 40.909 0.00 0.00 0.00 2.29
2952 4673 3.462483 TGTGCTACCGTCAGAAAGAAA 57.538 42.857 0.00 0.00 0.00 2.52
2953 4674 3.462483 TTGTGCTACCGTCAGAAAGAA 57.538 42.857 0.00 0.00 0.00 2.52
2954 4675 3.678056 ATTGTGCTACCGTCAGAAAGA 57.322 42.857 0.00 0.00 0.00 2.52
2955 4676 4.749245 AAATTGTGCTACCGTCAGAAAG 57.251 40.909 0.00 0.00 0.00 2.62
2956 4677 5.298276 AGAAAAATTGTGCTACCGTCAGAAA 59.702 36.000 0.00 0.00 0.00 2.52
2957 4678 4.819630 AGAAAAATTGTGCTACCGTCAGAA 59.180 37.500 0.00 0.00 0.00 3.02
2958 4679 4.213270 CAGAAAAATTGTGCTACCGTCAGA 59.787 41.667 0.00 0.00 0.00 3.27
2959 4680 4.213270 TCAGAAAAATTGTGCTACCGTCAG 59.787 41.667 0.00 0.00 0.00 3.51
2960 4681 4.130857 TCAGAAAAATTGTGCTACCGTCA 58.869 39.130 0.00 0.00 0.00 4.35
2961 4682 4.742438 TCAGAAAAATTGTGCTACCGTC 57.258 40.909 0.00 0.00 0.00 4.79
2962 4683 5.003804 AGATCAGAAAAATTGTGCTACCGT 58.996 37.500 0.00 0.00 0.00 4.83
2963 4684 5.122239 TCAGATCAGAAAAATTGTGCTACCG 59.878 40.000 0.00 0.00 0.00 4.02
2964 4685 6.500684 TCAGATCAGAAAAATTGTGCTACC 57.499 37.500 0.00 0.00 0.00 3.18
2965 4686 7.755591 TGATCAGATCAGAAAAATTGTGCTAC 58.244 34.615 9.21 0.00 33.59 3.58
2966 4687 7.926674 TGATCAGATCAGAAAAATTGTGCTA 57.073 32.000 9.21 0.00 33.59 3.49
2991 4712 2.218953 TCGGAATCTGCATACGAACC 57.781 50.000 0.00 0.00 0.00 3.62
3011 4732 1.282248 CGGATGAACGAACGTGCAGT 61.282 55.000 13.37 2.77 37.05 4.40
3022 4743 2.779506 ACCAAAGAAGACCGGATGAAC 58.220 47.619 9.46 0.00 0.00 3.18
3024 4745 2.370519 TGAACCAAAGAAGACCGGATGA 59.629 45.455 9.46 0.00 0.00 2.92
3026 4747 3.347216 CATGAACCAAAGAAGACCGGAT 58.653 45.455 9.46 0.00 0.00 4.18
3027 4748 2.552155 CCATGAACCAAAGAAGACCGGA 60.552 50.000 9.46 0.00 0.00 5.14
3028 4749 1.812571 CCATGAACCAAAGAAGACCGG 59.187 52.381 0.00 0.00 0.00 5.28
3029 4750 1.812571 CCCATGAACCAAAGAAGACCG 59.187 52.381 0.00 0.00 0.00 4.79
3030 4751 3.154827 TCCCATGAACCAAAGAAGACC 57.845 47.619 0.00 0.00 0.00 3.85
3031 4752 4.884164 CCTATCCCATGAACCAAAGAAGAC 59.116 45.833 0.00 0.00 0.00 3.01
3032 4753 4.788075 TCCTATCCCATGAACCAAAGAAGA 59.212 41.667 0.00 0.00 0.00 2.87
3033 4754 5.116084 TCCTATCCCATGAACCAAAGAAG 57.884 43.478 0.00 0.00 0.00 2.85
3035 4756 5.732331 ATTCCTATCCCATGAACCAAAGA 57.268 39.130 0.00 0.00 0.00 2.52
3036 4757 6.796785 AAATTCCTATCCCATGAACCAAAG 57.203 37.500 0.00 0.00 0.00 2.77
3038 4759 6.728164 TGAAAAATTCCTATCCCATGAACCAA 59.272 34.615 0.00 0.00 0.00 3.67
3041 4762 6.607198 TCCTGAAAAATTCCTATCCCATGAAC 59.393 38.462 0.00 0.00 0.00 3.18
3042 4763 6.740693 TCCTGAAAAATTCCTATCCCATGAA 58.259 36.000 0.00 0.00 0.00 2.57
3044 4765 7.607615 ATTCCTGAAAAATTCCTATCCCATG 57.392 36.000 0.00 0.00 0.00 3.66
3045 4766 7.952368 CCTATTCCTGAAAAATTCCTATCCCAT 59.048 37.037 0.00 0.00 0.00 4.00
3046 4767 7.130285 TCCTATTCCTGAAAAATTCCTATCCCA 59.870 37.037 0.00 0.00 0.00 4.37
3047 4768 7.526918 TCCTATTCCTGAAAAATTCCTATCCC 58.473 38.462 0.00 0.00 0.00 3.85
3048 4769 8.996651 TTCCTATTCCTGAAAAATTCCTATCC 57.003 34.615 0.00 0.00 0.00 2.59
3052 4773 9.325248 TGATTTTCCTATTCCTGAAAAATTCCT 57.675 29.630 0.00 0.00 42.02 3.36
3057 4778 9.989296 TCCTATGATTTTCCTATTCCTGAAAAA 57.011 29.630 0.00 0.00 42.02 1.94
3058 4779 9.632638 CTCCTATGATTTTCCTATTCCTGAAAA 57.367 33.333 0.00 0.00 42.67 2.29
3059 4780 8.220559 CCTCCTATGATTTTCCTATTCCTGAAA 58.779 37.037 0.00 0.00 0.00 2.69
3060 4781 7.350921 ACCTCCTATGATTTTCCTATTCCTGAA 59.649 37.037 0.00 0.00 0.00 3.02
3061 4782 6.851836 ACCTCCTATGATTTTCCTATTCCTGA 59.148 38.462 0.00 0.00 0.00 3.86
3062 4783 6.939163 CACCTCCTATGATTTTCCTATTCCTG 59.061 42.308 0.00 0.00 0.00 3.86
3063 4784 6.851836 TCACCTCCTATGATTTTCCTATTCCT 59.148 38.462 0.00 0.00 0.00 3.36
3064 4785 7.016661 TCTCACCTCCTATGATTTTCCTATTCC 59.983 40.741 0.00 0.00 0.00 3.01
3065 4786 7.967908 TCTCACCTCCTATGATTTTCCTATTC 58.032 38.462 0.00 0.00 0.00 1.75
3066 4787 7.937700 TCTCACCTCCTATGATTTTCCTATT 57.062 36.000 0.00 0.00 0.00 1.73
3067 4788 7.736691 TCATCTCACCTCCTATGATTTTCCTAT 59.263 37.037 0.00 0.00 0.00 2.57
3068 4789 7.015682 GTCATCTCACCTCCTATGATTTTCCTA 59.984 40.741 0.00 0.00 31.49 2.94
3069 4790 5.907662 TCATCTCACCTCCTATGATTTTCCT 59.092 40.000 0.00 0.00 0.00 3.36
3070 4791 5.994668 GTCATCTCACCTCCTATGATTTTCC 59.005 44.000 0.00 0.00 31.49 3.13
3071 4792 6.586344 TGTCATCTCACCTCCTATGATTTTC 58.414 40.000 0.00 0.00 31.49 2.29
3072 4793 6.566079 TGTCATCTCACCTCCTATGATTTT 57.434 37.500 0.00 0.00 31.49 1.82
3073 4794 6.531923 CATGTCATCTCACCTCCTATGATTT 58.468 40.000 0.00 0.00 31.49 2.17
3074 4795 5.512749 GCATGTCATCTCACCTCCTATGATT 60.513 44.000 0.00 0.00 31.49 2.57
3075 4796 4.020396 GCATGTCATCTCACCTCCTATGAT 60.020 45.833 0.00 0.00 31.49 2.45
3076 4797 3.323115 GCATGTCATCTCACCTCCTATGA 59.677 47.826 0.00 0.00 0.00 2.15
3077 4798 3.070590 TGCATGTCATCTCACCTCCTATG 59.929 47.826 0.00 0.00 0.00 2.23
3078 4799 3.311990 TGCATGTCATCTCACCTCCTAT 58.688 45.455 0.00 0.00 0.00 2.57
3079 4800 2.750814 TGCATGTCATCTCACCTCCTA 58.249 47.619 0.00 0.00 0.00 2.94
3080 4801 1.576577 TGCATGTCATCTCACCTCCT 58.423 50.000 0.00 0.00 0.00 3.69
3081 4802 2.492012 GATGCATGTCATCTCACCTCC 58.508 52.381 2.46 0.00 46.29 4.30
3111 4832 8.963725 TGCATCAAATGACATCTCTTTTTCTAT 58.036 29.630 0.00 0.00 0.00 1.98
3112 4833 8.339344 TGCATCAAATGACATCTCTTTTTCTA 57.661 30.769 0.00 0.00 0.00 2.10
3113 4834 7.223260 TGCATCAAATGACATCTCTTTTTCT 57.777 32.000 0.00 0.00 0.00 2.52
3114 4835 9.234384 CTATGCATCAAATGACATCTCTTTTTC 57.766 33.333 0.19 0.00 32.25 2.29
3115 4836 8.195436 CCTATGCATCAAATGACATCTCTTTTT 58.805 33.333 0.19 0.00 32.25 1.94
3116 4837 7.558807 TCCTATGCATCAAATGACATCTCTTTT 59.441 33.333 0.19 0.00 32.25 2.27
3117 4838 7.058525 TCCTATGCATCAAATGACATCTCTTT 58.941 34.615 0.19 0.00 32.25 2.52
3118 4839 6.598503 TCCTATGCATCAAATGACATCTCTT 58.401 36.000 0.19 0.00 32.25 2.85
3119 4840 6.183810 TCCTATGCATCAAATGACATCTCT 57.816 37.500 0.19 0.00 32.25 3.10
3120 4841 7.280428 CCTATCCTATGCATCAAATGACATCTC 59.720 40.741 0.19 0.00 32.25 2.75
3121 4842 7.037802 TCCTATCCTATGCATCAAATGACATCT 60.038 37.037 0.19 0.00 32.25 2.90
3122 4843 7.108194 TCCTATCCTATGCATCAAATGACATC 58.892 38.462 0.19 0.00 32.25 3.06
3123 4844 7.024345 TCCTATCCTATGCATCAAATGACAT 57.976 36.000 0.19 0.00 33.67 3.06
3124 4845 6.438186 TCCTATCCTATGCATCAAATGACA 57.562 37.500 0.19 0.00 0.00 3.58
3125 4846 7.934855 ATTCCTATCCTATGCATCAAATGAC 57.065 36.000 0.19 0.00 0.00 3.06
3126 4847 8.945195 AAATTCCTATCCTATGCATCAAATGA 57.055 30.769 0.19 0.00 0.00 2.57
3127 4848 9.991906 AAAAATTCCTATCCTATGCATCAAATG 57.008 29.630 0.19 0.00 0.00 2.32
3129 4850 8.641541 GGAAAAATTCCTATCCTATGCATCAAA 58.358 33.333 0.19 0.00 46.57 2.69
3130 4851 8.181904 GGAAAAATTCCTATCCTATGCATCAA 57.818 34.615 0.19 0.00 46.57 2.57
3131 4852 7.765695 GGAAAAATTCCTATCCTATGCATCA 57.234 36.000 0.19 0.00 46.57 3.07
3148 4869 9.247861 ACATTAGCTAAGACTCAATGGAAAAAT 57.752 29.630 12.54 0.00 32.20 1.82
3149 4870 8.635765 ACATTAGCTAAGACTCAATGGAAAAA 57.364 30.769 12.54 0.00 32.20 1.94
3150 4871 8.635765 AACATTAGCTAAGACTCAATGGAAAA 57.364 30.769 12.54 0.00 32.20 2.29
3151 4872 8.635765 AAACATTAGCTAAGACTCAATGGAAA 57.364 30.769 12.54 0.00 32.20 3.13
3152 4873 8.635765 AAAACATTAGCTAAGACTCAATGGAA 57.364 30.769 12.54 0.00 32.20 3.53
3153 4874 8.635765 AAAAACATTAGCTAAGACTCAATGGA 57.364 30.769 12.54 0.00 32.20 3.41
3180 4901 8.960591 GGAATCAATCCTTCACATTTTAGAGAA 58.039 33.333 0.00 0.00 45.56 2.87
3181 4902 8.511604 GGAATCAATCCTTCACATTTTAGAGA 57.488 34.615 0.00 0.00 45.56 3.10
3196 4917 6.210287 CCTACGTAGGATAGGAATCAATCC 57.790 45.833 33.93 5.91 46.75 3.01
3210 4931 6.607004 AATGGATTCCTATTCCTACGTAGG 57.393 41.667 32.05 32.05 45.02 3.18
3225 4946 8.749354 AGTTATTTGGTTTGTAGGAATGGATTC 58.251 33.333 0.00 0.00 36.08 2.52
3226 4947 8.664669 AGTTATTTGGTTTGTAGGAATGGATT 57.335 30.769 0.00 0.00 0.00 3.01
3227 4948 8.664669 AAGTTATTTGGTTTGTAGGAATGGAT 57.335 30.769 0.00 0.00 0.00 3.41
3228 4949 7.726291 TGAAGTTATTTGGTTTGTAGGAATGGA 59.274 33.333 0.00 0.00 0.00 3.41
3229 4950 7.891561 TGAAGTTATTTGGTTTGTAGGAATGG 58.108 34.615 0.00 0.00 0.00 3.16
3230 4951 9.757227 TTTGAAGTTATTTGGTTTGTAGGAATG 57.243 29.630 0.00 0.00 0.00 2.67
3231 4952 9.981114 CTTTGAAGTTATTTGGTTTGTAGGAAT 57.019 29.630 0.00 0.00 0.00 3.01
3232 4953 9.191479 TCTTTGAAGTTATTTGGTTTGTAGGAA 57.809 29.630 0.00 0.00 0.00 3.36
3233 4954 8.754991 TCTTTGAAGTTATTTGGTTTGTAGGA 57.245 30.769 0.00 0.00 0.00 2.94
3234 4955 9.810545 TTTCTTTGAAGTTATTTGGTTTGTAGG 57.189 29.630 0.00 0.00 0.00 3.18
3290 5011 9.981114 CTTTGGTTTGTAGAAATTTCATAGGTT 57.019 29.630 19.99 0.99 0.00 3.50
3291 5012 9.362151 TCTTTGGTTTGTAGAAATTTCATAGGT 57.638 29.630 19.99 1.71 0.00 3.08
3295 5016 7.657354 GCCTTCTTTGGTTTGTAGAAATTTCAT 59.343 33.333 19.99 7.95 0.00 2.57
3296 5017 6.983890 GCCTTCTTTGGTTTGTAGAAATTTCA 59.016 34.615 19.99 3.83 0.00 2.69
3297 5018 6.423905 GGCCTTCTTTGGTTTGTAGAAATTTC 59.576 38.462 10.33 10.33 0.00 2.17
3298 5019 6.099701 AGGCCTTCTTTGGTTTGTAGAAATTT 59.900 34.615 0.00 0.00 0.00 1.82
3299 5020 5.602561 AGGCCTTCTTTGGTTTGTAGAAATT 59.397 36.000 0.00 0.00 0.00 1.82
3300 5021 5.147767 AGGCCTTCTTTGGTTTGTAGAAAT 58.852 37.500 0.00 0.00 0.00 2.17
3301 5022 4.542697 AGGCCTTCTTTGGTTTGTAGAAA 58.457 39.130 0.00 0.00 0.00 2.52
3302 5023 4.178956 AGGCCTTCTTTGGTTTGTAGAA 57.821 40.909 0.00 0.00 0.00 2.10
3303 5024 3.876309 AGGCCTTCTTTGGTTTGTAGA 57.124 42.857 0.00 0.00 0.00 2.59
3304 5025 3.888930 TCAAGGCCTTCTTTGGTTTGTAG 59.111 43.478 17.29 0.00 32.41 2.74
3305 5026 3.904717 TCAAGGCCTTCTTTGGTTTGTA 58.095 40.909 17.29 0.00 32.41 2.41
3306 5027 2.745968 TCAAGGCCTTCTTTGGTTTGT 58.254 42.857 17.29 0.00 32.41 2.83
3307 5028 3.817709 TTCAAGGCCTTCTTTGGTTTG 57.182 42.857 17.29 1.24 32.41 2.93
3308 5029 5.011023 CACTATTCAAGGCCTTCTTTGGTTT 59.989 40.000 17.29 0.00 32.41 3.27
3309 5030 4.524328 CACTATTCAAGGCCTTCTTTGGTT 59.476 41.667 17.29 0.00 32.41 3.67
3310 5031 4.082125 CACTATTCAAGGCCTTCTTTGGT 58.918 43.478 17.29 9.47 32.41 3.67
3311 5032 4.082125 ACACTATTCAAGGCCTTCTTTGG 58.918 43.478 17.29 3.89 32.41 3.28
3312 5033 5.712152 AACACTATTCAAGGCCTTCTTTG 57.288 39.130 17.29 5.21 32.41 2.77
3313 5034 6.731292 AAAACACTATTCAAGGCCTTCTTT 57.269 33.333 17.29 5.38 32.41 2.52
3314 5035 6.098266 ACAAAAACACTATTCAAGGCCTTCTT 59.902 34.615 17.29 5.77 35.79 2.52
3315 5036 5.598417 ACAAAAACACTATTCAAGGCCTTCT 59.402 36.000 17.29 5.97 0.00 2.85
3316 5037 5.842907 ACAAAAACACTATTCAAGGCCTTC 58.157 37.500 17.29 0.00 0.00 3.46
3317 5038 5.869649 ACAAAAACACTATTCAAGGCCTT 57.130 34.783 13.78 13.78 0.00 4.35
3318 5039 5.221441 GGAACAAAAACACTATTCAAGGCCT 60.221 40.000 0.00 0.00 0.00 5.19
3319 5040 4.988540 GGAACAAAAACACTATTCAAGGCC 59.011 41.667 0.00 0.00 0.00 5.19
3320 5041 4.988540 GGGAACAAAAACACTATTCAAGGC 59.011 41.667 0.00 0.00 0.00 4.35
3321 5042 6.155475 TGGGAACAAAAACACTATTCAAGG 57.845 37.500 0.00 0.00 37.44 3.61
3344 5065 5.890424 ATTGTTACCGGATGAACGAAAAT 57.110 34.783 9.46 3.03 35.47 1.82
3345 5066 6.798315 TTATTGTTACCGGATGAACGAAAA 57.202 33.333 9.46 0.67 35.47 2.29
3346 5067 6.988622 ATTATTGTTACCGGATGAACGAAA 57.011 33.333 9.46 5.67 35.47 3.46
3347 5068 8.389603 GTTTATTATTGTTACCGGATGAACGAA 58.610 33.333 9.46 7.12 35.47 3.85
3348 5069 7.765360 AGTTTATTATTGTTACCGGATGAACGA 59.235 33.333 9.46 9.73 35.47 3.85
3349 5070 7.849026 CAGTTTATTATTGTTACCGGATGAACG 59.151 37.037 9.46 0.00 0.00 3.95
3350 5071 8.126700 CCAGTTTATTATTGTTACCGGATGAAC 58.873 37.037 9.46 10.12 0.00 3.18
3351 5072 7.830201 ACCAGTTTATTATTGTTACCGGATGAA 59.170 33.333 9.46 0.00 0.00 2.57
3352 5073 7.340256 ACCAGTTTATTATTGTTACCGGATGA 58.660 34.615 9.46 0.00 0.00 2.92
3353 5074 7.562454 ACCAGTTTATTATTGTTACCGGATG 57.438 36.000 9.46 0.00 0.00 3.51
3354 5075 8.584063 AAACCAGTTTATTATTGTTACCGGAT 57.416 30.769 9.46 0.00 0.00 4.18
3355 5076 7.999450 AAACCAGTTTATTATTGTTACCGGA 57.001 32.000 9.46 0.00 0.00 5.14
3356 5077 7.542824 CCAAAACCAGTTTATTATTGTTACCGG 59.457 37.037 0.00 0.00 31.63 5.28
3358 5079 9.767228 AACCAAAACCAGTTTATTATTGTTACC 57.233 29.630 0.00 0.00 31.63 2.85
3375 5097 4.094146 CCACATCAACAAACAACCAAAACC 59.906 41.667 0.00 0.00 0.00 3.27
3399 5121 2.248835 AACGTACGTGCCACCAAGC 61.249 57.895 23.57 0.00 0.00 4.01
3465 5187 0.438445 TTTTCGCGCTCGATCACAAG 59.562 50.000 5.56 0.00 45.04 3.16
3493 5215 0.940126 GCATACGCCTCCTTGTGATG 59.060 55.000 0.00 0.00 0.00 3.07
3555 5277 4.501714 TCCCGTATCGCCGTGTGC 62.502 66.667 0.00 0.00 0.00 4.57
3556 5278 2.278596 CTCCCGTATCGCCGTGTG 60.279 66.667 0.00 0.00 0.00 3.82
3557 5279 4.203076 GCTCCCGTATCGCCGTGT 62.203 66.667 0.00 0.00 0.00 4.49
3558 5280 3.709880 TTGCTCCCGTATCGCCGTG 62.710 63.158 0.00 0.00 0.00 4.94
3559 5281 3.426117 CTTGCTCCCGTATCGCCGT 62.426 63.158 0.00 0.00 0.00 5.68
3560 5282 2.658593 CTTGCTCCCGTATCGCCG 60.659 66.667 0.00 0.00 0.00 6.46
3561 5283 1.591863 GTCTTGCTCCCGTATCGCC 60.592 63.158 0.00 0.00 0.00 5.54
3562 5284 0.459585 TTGTCTTGCTCCCGTATCGC 60.460 55.000 0.00 0.00 0.00 4.58
3563 5285 2.004583 TTTGTCTTGCTCCCGTATCG 57.995 50.000 0.00 0.00 0.00 2.92
3564 5286 2.032178 GCATTTGTCTTGCTCCCGTATC 59.968 50.000 0.00 0.00 37.14 2.24
3565 5287 2.017049 GCATTTGTCTTGCTCCCGTAT 58.983 47.619 0.00 0.00 37.14 3.06
3566 5288 1.448985 GCATTTGTCTTGCTCCCGTA 58.551 50.000 0.00 0.00 37.14 4.02
3567 5289 2.257353 GCATTTGTCTTGCTCCCGT 58.743 52.632 0.00 0.00 37.14 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.