Multiple sequence alignment - TraesCS3A01G135300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G135300 chr3A 100.000 4771 0 0 1 4771 112946222 112950992 0.000000e+00 8811.0
1 TraesCS3A01G135300 chr3D 90.104 2203 120 41 1885 4047 116032618 116034762 0.000000e+00 2771.0
2 TraesCS3A01G135300 chr3D 87.876 1031 93 20 864 1881 116031456 116032467 0.000000e+00 1182.0
3 TraesCS3A01G135300 chr3D 78.544 522 62 25 81 565 116030902 116031410 1.000000e-76 298.0
4 TraesCS3A01G135300 chr3D 93.333 150 6 2 4318 4466 116035636 116035782 8.040000e-53 219.0
5 TraesCS3A01G135300 chr3D 79.899 199 35 4 2512 2706 117509640 117509443 1.790000e-29 141.0
6 TraesCS3A01G135300 chr3B 84.951 2678 177 99 2218 4771 169619824 169622399 0.000000e+00 2505.0
7 TraesCS3A01G135300 chr3B 86.878 1166 98 26 733 1882 169618082 169619208 0.000000e+00 1254.0
8 TraesCS3A01G135300 chr7B 84.848 132 19 1 602 733 597315196 597315066 1.080000e-26 132.0
9 TraesCS3A01G135300 chr7B 88.679 53 4 2 602 653 458458081 458458132 3.990000e-06 63.9
10 TraesCS3A01G135300 chr1B 84.252 127 20 0 608 734 85239808 85239682 1.800000e-24 124.0
11 TraesCS3A01G135300 chr5B 86.047 86 10 2 3569 3653 659218108 659218192 1.830000e-14 91.6
12 TraesCS3A01G135300 chr6B 78.358 134 26 3 602 733 690887861 690887729 3.060000e-12 84.2
13 TraesCS3A01G135300 chr2A 82.609 92 11 5 202 290 554107003 554106914 5.120000e-10 76.8
14 TraesCS3A01G135300 chr5A 89.474 57 6 0 3572 3628 650846281 650846337 6.620000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G135300 chr3A 112946222 112950992 4770 False 8811.0 8811 100.00000 1 4771 1 chr3A.!!$F1 4770
1 TraesCS3A01G135300 chr3D 116030902 116035782 4880 False 1117.5 2771 87.46425 81 4466 4 chr3D.!!$F1 4385
2 TraesCS3A01G135300 chr3B 169618082 169622399 4317 False 1879.5 2505 85.91450 733 4771 2 chr3B.!!$F1 4038

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
808 848 0.034477 AATGGGCCGGTTTCTCGAAT 60.034 50.000 1.90 0.0 0.00 3.34 F
901 944 0.178973 GTTACCAGCCCACCAGGTTT 60.179 55.000 0.00 0.0 38.26 3.27 F
1302 1348 0.250209 TTTGGTTTGGCCGCGTAGTA 60.250 50.000 4.92 0.0 41.21 1.82 F
1421 1471 0.539986 AGGCGTGTGGTAATCCGAAT 59.460 50.000 0.00 0.0 36.30 3.34 F
2926 3337 1.002033 GCTTGCTTGAGTGTTCCACAG 60.002 52.381 0.00 0.0 36.74 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2228 2590 1.883275 TCAATGGCAACCACTTAACCG 59.117 47.619 0.0 0.0 35.80 4.44 R
2842 3249 1.202486 TCAACGCACGAGAAAGAAGGT 60.202 47.619 0.0 0.0 0.00 3.50 R
2847 3254 1.722751 GCATGTCAACGCACGAGAAAG 60.723 52.381 0.0 0.0 0.00 2.62 R
3389 3844 1.462283 CACACGCTCATCTGTTGAAGG 59.538 52.381 0.0 0.0 32.78 3.46 R
4669 5755 1.203287 GAGCTTTGCCATTTCAGGACC 59.797 52.381 0.0 0.0 0.00 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.398319 TGGTTTCATCTCTCCTTTGTTCC 58.602 43.478 0.00 0.00 0.00 3.62
24 25 4.104738 TGGTTTCATCTCTCCTTTGTTCCT 59.895 41.667 0.00 0.00 0.00 3.36
25 26 5.309543 TGGTTTCATCTCTCCTTTGTTCCTA 59.690 40.000 0.00 0.00 0.00 2.94
26 27 6.183361 TGGTTTCATCTCTCCTTTGTTCCTAA 60.183 38.462 0.00 0.00 0.00 2.69
27 28 6.887002 GGTTTCATCTCTCCTTTGTTCCTAAT 59.113 38.462 0.00 0.00 0.00 1.73
28 29 7.394641 GGTTTCATCTCTCCTTTGTTCCTAATT 59.605 37.037 0.00 0.00 0.00 1.40
29 30 8.797438 GTTTCATCTCTCCTTTGTTCCTAATTT 58.203 33.333 0.00 0.00 0.00 1.82
30 31 8.567285 TTCATCTCTCCTTTGTTCCTAATTTC 57.433 34.615 0.00 0.00 0.00 2.17
31 32 7.689299 TCATCTCTCCTTTGTTCCTAATTTCA 58.311 34.615 0.00 0.00 0.00 2.69
32 33 8.163408 TCATCTCTCCTTTGTTCCTAATTTCAA 58.837 33.333 0.00 0.00 0.00 2.69
33 34 8.964772 CATCTCTCCTTTGTTCCTAATTTCAAT 58.035 33.333 0.00 0.00 0.00 2.57
34 35 8.940397 TCTCTCCTTTGTTCCTAATTTCAATT 57.060 30.769 0.00 0.00 0.00 2.32
35 36 9.367160 TCTCTCCTTTGTTCCTAATTTCAATTT 57.633 29.630 0.00 0.00 0.00 1.82
60 61 4.891627 TTTTCGTTGCTCAGATTTGTGA 57.108 36.364 0.00 0.00 0.00 3.58
61 62 4.472691 TTTCGTTGCTCAGATTTGTGAG 57.527 40.909 0.56 0.56 45.91 3.51
62 63 3.111853 TCGTTGCTCAGATTTGTGAGT 57.888 42.857 6.59 0.00 45.07 3.41
63 64 3.466836 TCGTTGCTCAGATTTGTGAGTT 58.533 40.909 6.59 0.00 45.07 3.01
64 65 3.248363 TCGTTGCTCAGATTTGTGAGTTG 59.752 43.478 6.59 0.00 45.07 3.16
65 66 3.303406 GTTGCTCAGATTTGTGAGTTGC 58.697 45.455 6.59 0.00 45.07 4.17
66 67 2.854963 TGCTCAGATTTGTGAGTTGCT 58.145 42.857 6.59 0.00 45.07 3.91
67 68 2.810274 TGCTCAGATTTGTGAGTTGCTC 59.190 45.455 6.59 0.00 45.07 4.26
68 69 2.159734 GCTCAGATTTGTGAGTTGCTCG 60.160 50.000 6.59 0.00 45.07 5.03
69 70 3.062763 CTCAGATTTGTGAGTTGCTCGT 58.937 45.455 0.00 0.00 39.39 4.18
70 71 2.802247 TCAGATTTGTGAGTTGCTCGTG 59.198 45.455 0.00 0.00 32.35 4.35
71 72 2.545526 CAGATTTGTGAGTTGCTCGTGT 59.454 45.455 0.00 0.00 32.35 4.49
72 73 2.545526 AGATTTGTGAGTTGCTCGTGTG 59.454 45.455 0.00 0.00 32.35 3.82
73 74 1.732941 TTTGTGAGTTGCTCGTGTGT 58.267 45.000 0.00 0.00 32.35 3.72
74 75 1.732941 TTGTGAGTTGCTCGTGTGTT 58.267 45.000 0.00 0.00 32.35 3.32
75 76 1.006086 TGTGAGTTGCTCGTGTGTTG 58.994 50.000 0.00 0.00 32.35 3.33
76 77 1.006832 GTGAGTTGCTCGTGTGTTGT 58.993 50.000 0.00 0.00 32.35 3.32
77 78 1.006086 TGAGTTGCTCGTGTGTTGTG 58.994 50.000 0.00 0.00 32.35 3.33
78 79 1.286501 GAGTTGCTCGTGTGTTGTGA 58.713 50.000 0.00 0.00 0.00 3.58
79 80 1.867233 GAGTTGCTCGTGTGTTGTGAT 59.133 47.619 0.00 0.00 0.00 3.06
80 81 1.599071 AGTTGCTCGTGTGTTGTGATG 59.401 47.619 0.00 0.00 0.00 3.07
81 82 1.330521 GTTGCTCGTGTGTTGTGATGT 59.669 47.619 0.00 0.00 0.00 3.06
82 83 2.517650 TGCTCGTGTGTTGTGATGTA 57.482 45.000 0.00 0.00 0.00 2.29
83 84 2.403259 TGCTCGTGTGTTGTGATGTAG 58.597 47.619 0.00 0.00 0.00 2.74
84 85 1.726791 GCTCGTGTGTTGTGATGTAGG 59.273 52.381 0.00 0.00 0.00 3.18
85 86 2.866460 GCTCGTGTGTTGTGATGTAGGT 60.866 50.000 0.00 0.00 0.00 3.08
86 87 3.390135 CTCGTGTGTTGTGATGTAGGTT 58.610 45.455 0.00 0.00 0.00 3.50
87 88 3.799366 TCGTGTGTTGTGATGTAGGTTT 58.201 40.909 0.00 0.00 0.00 3.27
88 89 4.193090 TCGTGTGTTGTGATGTAGGTTTT 58.807 39.130 0.00 0.00 0.00 2.43
89 90 4.034626 TCGTGTGTTGTGATGTAGGTTTTG 59.965 41.667 0.00 0.00 0.00 2.44
90 91 4.201871 CGTGTGTTGTGATGTAGGTTTTGT 60.202 41.667 0.00 0.00 0.00 2.83
91 92 5.646606 GTGTGTTGTGATGTAGGTTTTGTT 58.353 37.500 0.00 0.00 0.00 2.83
92 93 6.457122 CGTGTGTTGTGATGTAGGTTTTGTTA 60.457 38.462 0.00 0.00 0.00 2.41
99 100 6.714810 TGTGATGTAGGTTTTGTTAATGCTCT 59.285 34.615 0.00 0.00 0.00 4.09
133 134 4.094294 GCATGTGTTAGTTTCTCCGCAATA 59.906 41.667 0.00 0.00 0.00 1.90
139 140 6.092259 GTGTTAGTTTCTCCGCAATATCTTGT 59.908 38.462 0.00 0.00 34.69 3.16
141 142 4.192317 AGTTTCTCCGCAATATCTTGTCC 58.808 43.478 0.00 0.00 34.69 4.02
143 144 1.068588 TCTCCGCAATATCTTGTCCGG 59.931 52.381 0.00 0.00 34.69 5.14
155 157 8.338259 CAATATCTTGTCCGGTTCTATTTTCTG 58.662 37.037 0.00 0.00 0.00 3.02
156 158 4.000988 TCTTGTCCGGTTCTATTTTCTGC 58.999 43.478 0.00 0.00 0.00 4.26
168 170 8.893727 GGTTCTATTTTCTGCAGCTAGATTTTA 58.106 33.333 9.47 0.00 0.00 1.52
196 218 6.585389 AGTTCACTAACTTGAGAAACGTTC 57.415 37.500 0.00 0.00 43.60 3.95
197 219 5.231568 AGTTCACTAACTTGAGAAACGTTCG 59.768 40.000 0.00 0.00 43.60 3.95
201 223 1.219522 ACTTGAGAAACGTTCGCGGG 61.220 55.000 6.13 0.00 46.45 6.13
211 233 1.117234 CGTTCGCGGGTTTGAAAAAG 58.883 50.000 6.13 0.00 36.88 2.27
214 236 2.478547 TCGCGGGTTTGAAAAAGTTC 57.521 45.000 6.13 0.00 0.00 3.01
215 237 1.743958 TCGCGGGTTTGAAAAAGTTCA 59.256 42.857 6.13 0.00 42.12 3.18
216 238 2.359531 TCGCGGGTTTGAAAAAGTTCAT 59.640 40.909 6.13 0.00 43.29 2.57
217 239 2.470999 CGCGGGTTTGAAAAAGTTCATG 59.529 45.455 0.00 0.00 43.29 3.07
218 240 3.712187 GCGGGTTTGAAAAAGTTCATGA 58.288 40.909 0.00 0.00 43.29 3.07
223 245 7.344441 CGGGTTTGAAAAAGTTCATGAAATTC 58.656 34.615 20.35 16.26 43.29 2.17
224 246 7.010923 CGGGTTTGAAAAAGTTCATGAAATTCA 59.989 33.333 20.35 18.22 43.29 2.57
253 275 9.450807 AATGTTCACTAACTTGAGAAAATTTCG 57.549 29.630 0.00 0.00 36.51 3.46
254 276 7.981142 TGTTCACTAACTTGAGAAAATTTCGT 58.019 30.769 0.00 0.00 36.51 3.85
255 277 7.908082 TGTTCACTAACTTGAGAAAATTTCGTG 59.092 33.333 0.00 0.71 36.51 4.35
257 279 8.203937 TCACTAACTTGAGAAAATTTCGTGAA 57.796 30.769 0.00 0.00 34.02 3.18
384 406 8.340230 ACTTCACGAATTTGAGAAAATTTCAC 57.660 30.769 8.55 2.26 32.92 3.18
466 506 9.865321 ATACATTGGAGAAAATCATGAAACAAG 57.135 29.630 0.00 0.00 0.00 3.16
471 511 8.647143 TGGAGAAAATCATGAAACAAGAAAAC 57.353 30.769 0.00 0.00 0.00 2.43
472 512 8.256605 TGGAGAAAATCATGAAACAAGAAAACA 58.743 29.630 0.00 0.00 0.00 2.83
528 568 3.430333 AAATGCGGACGTGAAAGTTTT 57.570 38.095 0.00 0.00 0.00 2.43
545 585 4.948847 AGTTTTGGGAAGCTTCATTTCAC 58.051 39.130 27.02 16.72 0.00 3.18
557 597 0.179240 CATTTCACGAGCGAGTGTGC 60.179 55.000 12.93 0.00 42.40 4.57
566 606 4.059459 CGAGTGTGCGTTGCGGTC 62.059 66.667 0.00 0.00 0.00 4.79
567 607 2.964925 GAGTGTGCGTTGCGGTCA 60.965 61.111 0.00 0.00 0.00 4.02
568 608 2.943345 GAGTGTGCGTTGCGGTCAG 61.943 63.158 0.00 0.00 0.00 3.51
578 618 2.184579 GCGGTCAGCCACTAGGTC 59.815 66.667 0.00 0.00 40.81 3.85
579 619 2.646175 GCGGTCAGCCACTAGGTCA 61.646 63.158 0.00 0.00 40.81 4.02
580 620 1.513158 CGGTCAGCCACTAGGTCAG 59.487 63.158 0.00 0.00 37.19 3.51
581 621 0.965866 CGGTCAGCCACTAGGTCAGA 60.966 60.000 0.00 0.00 37.19 3.27
582 622 0.533032 GGTCAGCCACTAGGTCAGAC 59.467 60.000 0.00 0.00 37.19 3.51
583 623 1.551452 GTCAGCCACTAGGTCAGACT 58.449 55.000 0.00 0.00 37.19 3.24
584 624 2.620886 GGTCAGCCACTAGGTCAGACTA 60.621 54.545 0.00 0.00 37.19 2.59
585 625 3.090037 GTCAGCCACTAGGTCAGACTAA 58.910 50.000 0.00 0.00 37.19 2.24
586 626 3.510360 GTCAGCCACTAGGTCAGACTAAA 59.490 47.826 0.00 0.00 37.19 1.85
587 627 4.160626 GTCAGCCACTAGGTCAGACTAAAT 59.839 45.833 0.00 0.00 37.19 1.40
588 628 4.160439 TCAGCCACTAGGTCAGACTAAATG 59.840 45.833 0.00 0.00 37.19 2.32
589 629 3.118592 AGCCACTAGGTCAGACTAAATGC 60.119 47.826 0.00 0.00 37.19 3.56
590 630 3.448686 CCACTAGGTCAGACTAAATGCG 58.551 50.000 0.00 0.00 0.00 4.73
591 631 3.448686 CACTAGGTCAGACTAAATGCGG 58.551 50.000 0.00 0.00 0.00 5.69
592 632 3.130516 CACTAGGTCAGACTAAATGCGGA 59.869 47.826 0.00 0.00 0.00 5.54
593 633 2.674796 AGGTCAGACTAAATGCGGAC 57.325 50.000 0.00 0.00 0.00 4.79
594 634 1.135083 AGGTCAGACTAAATGCGGACG 60.135 52.381 0.00 0.00 0.00 4.79
595 635 1.403780 GGTCAGACTAAATGCGGACGT 60.404 52.381 0.00 0.00 0.00 4.34
596 636 1.654105 GTCAGACTAAATGCGGACGTG 59.346 52.381 0.00 0.00 0.00 4.49
597 637 1.542472 TCAGACTAAATGCGGACGTGA 59.458 47.619 0.00 0.00 0.00 4.35
598 638 2.029739 TCAGACTAAATGCGGACGTGAA 60.030 45.455 0.00 0.00 0.00 3.18
599 639 2.734606 CAGACTAAATGCGGACGTGAAA 59.265 45.455 0.00 0.00 0.00 2.69
600 640 2.993899 AGACTAAATGCGGACGTGAAAG 59.006 45.455 0.00 0.00 0.00 2.62
601 641 2.735134 GACTAAATGCGGACGTGAAAGT 59.265 45.455 0.00 0.00 0.00 2.66
602 642 3.135994 ACTAAATGCGGACGTGAAAGTT 58.864 40.909 0.00 0.00 0.00 2.66
603 643 3.562557 ACTAAATGCGGACGTGAAAGTTT 59.437 39.130 0.00 0.00 0.00 2.66
604 644 3.430333 AAATGCGGACGTGAAAGTTTT 57.570 38.095 0.00 0.00 0.00 2.43
605 645 2.681152 ATGCGGACGTGAAAGTTTTC 57.319 45.000 0.00 0.00 37.69 2.29
606 646 0.302288 TGCGGACGTGAAAGTTTTCG 59.698 50.000 0.00 10.91 40.01 3.46
607 647 0.578211 GCGGACGTGAAAGTTTTCGA 59.422 50.000 16.80 0.00 40.01 3.71
608 648 1.193874 GCGGACGTGAAAGTTTTCGAT 59.806 47.619 16.80 5.54 40.01 3.59
609 649 2.349155 GCGGACGTGAAAGTTTTCGATT 60.349 45.455 16.80 0.92 40.01 3.34
610 650 3.847105 GCGGACGTGAAAGTTTTCGATTT 60.847 43.478 16.80 0.00 40.01 2.17
611 651 3.898361 CGGACGTGAAAGTTTTCGATTTC 59.102 43.478 16.80 2.88 40.01 2.17
612 652 4.318546 CGGACGTGAAAGTTTTCGATTTCT 60.319 41.667 16.80 0.00 40.01 2.52
613 653 5.138095 GGACGTGAAAGTTTTCGATTTCTC 58.862 41.667 16.80 6.15 40.01 2.87
614 654 5.050295 GGACGTGAAAGTTTTCGATTTCTCT 60.050 40.000 16.80 0.00 40.01 3.10
615 655 6.359480 ACGTGAAAGTTTTCGATTTCTCTT 57.641 33.333 16.80 0.00 40.01 2.85
616 656 6.782150 ACGTGAAAGTTTTCGATTTCTCTTT 58.218 32.000 16.80 6.18 40.01 2.52
617 657 6.905609 ACGTGAAAGTTTTCGATTTCTCTTTC 59.094 34.615 16.80 13.07 40.01 2.62
618 658 6.357240 CGTGAAAGTTTTCGATTTCTCTTTCC 59.643 38.462 17.60 12.04 39.57 3.13
619 659 7.418408 GTGAAAGTTTTCGATTTCTCTTTCCT 58.582 34.615 17.60 0.00 39.57 3.36
620 660 7.915923 GTGAAAGTTTTCGATTTCTCTTTCCTT 59.084 33.333 17.60 0.00 39.57 3.36
621 661 8.466798 TGAAAGTTTTCGATTTCTCTTTCCTTT 58.533 29.630 17.60 0.00 39.57 3.11
622 662 8.858003 AAAGTTTTCGATTTCTCTTTCCTTTC 57.142 30.769 0.00 0.00 0.00 2.62
623 663 7.809546 AGTTTTCGATTTCTCTTTCCTTTCT 57.190 32.000 0.00 0.00 0.00 2.52
624 664 8.226819 AGTTTTCGATTTCTCTTTCCTTTCTT 57.773 30.769 0.00 0.00 0.00 2.52
625 665 8.687242 AGTTTTCGATTTCTCTTTCCTTTCTTT 58.313 29.630 0.00 0.00 0.00 2.52
626 666 8.746751 GTTTTCGATTTCTCTTTCCTTTCTTTG 58.253 33.333 0.00 0.00 0.00 2.77
627 667 6.560253 TCGATTTCTCTTTCCTTTCTTTGG 57.440 37.500 0.00 0.00 0.00 3.28
628 668 5.473504 TCGATTTCTCTTTCCTTTCTTTGGG 59.526 40.000 0.00 0.00 0.00 4.12
629 669 4.937201 TTTCTCTTTCCTTTCTTTGGGC 57.063 40.909 0.00 0.00 0.00 5.36
630 670 3.593442 TCTCTTTCCTTTCTTTGGGCA 57.407 42.857 0.00 0.00 0.00 5.36
631 671 4.118168 TCTCTTTCCTTTCTTTGGGCAT 57.882 40.909 0.00 0.00 0.00 4.40
632 672 3.828451 TCTCTTTCCTTTCTTTGGGCATG 59.172 43.478 0.00 0.00 0.00 4.06
633 673 3.828451 CTCTTTCCTTTCTTTGGGCATGA 59.172 43.478 0.00 0.00 0.00 3.07
634 674 4.419282 TCTTTCCTTTCTTTGGGCATGAT 58.581 39.130 0.00 0.00 0.00 2.45
635 675 4.840115 TCTTTCCTTTCTTTGGGCATGATT 59.160 37.500 0.00 0.00 0.00 2.57
636 676 4.540359 TTCCTTTCTTTGGGCATGATTG 57.460 40.909 0.00 0.00 0.00 2.67
637 677 3.509442 TCCTTTCTTTGGGCATGATTGT 58.491 40.909 0.00 0.00 0.00 2.71
638 678 4.671831 TCCTTTCTTTGGGCATGATTGTA 58.328 39.130 0.00 0.00 0.00 2.41
639 679 5.271598 TCCTTTCTTTGGGCATGATTGTAT 58.728 37.500 0.00 0.00 0.00 2.29
640 680 5.721000 TCCTTTCTTTGGGCATGATTGTATT 59.279 36.000 0.00 0.00 0.00 1.89
641 681 5.813672 CCTTTCTTTGGGCATGATTGTATTG 59.186 40.000 0.00 0.00 0.00 1.90
642 682 5.999205 TTCTTTGGGCATGATTGTATTGT 57.001 34.783 0.00 0.00 0.00 2.71
643 683 5.999205 TCTTTGGGCATGATTGTATTGTT 57.001 34.783 0.00 0.00 0.00 2.83
644 684 5.722263 TCTTTGGGCATGATTGTATTGTTG 58.278 37.500 0.00 0.00 0.00 3.33
645 685 3.523606 TGGGCATGATTGTATTGTTGC 57.476 42.857 0.00 0.00 0.00 4.17
646 686 2.168106 TGGGCATGATTGTATTGTTGCC 59.832 45.455 0.00 3.18 46.92 4.52
647 687 2.825205 GGCATGATTGTATTGTTGCCC 58.175 47.619 0.00 0.00 42.96 5.36
648 688 2.483538 GGCATGATTGTATTGTTGCCCC 60.484 50.000 0.00 0.00 42.96 5.80
649 689 2.168106 GCATGATTGTATTGTTGCCCCA 59.832 45.455 0.00 0.00 0.00 4.96
650 690 3.738899 GCATGATTGTATTGTTGCCCCAG 60.739 47.826 0.00 0.00 0.00 4.45
651 691 1.824230 TGATTGTATTGTTGCCCCAGC 59.176 47.619 0.00 0.00 40.48 4.85
652 692 1.136891 GATTGTATTGTTGCCCCAGCC 59.863 52.381 0.00 0.00 38.69 4.85
653 693 1.247419 TTGTATTGTTGCCCCAGCCG 61.247 55.000 0.00 0.00 38.69 5.52
654 694 1.677633 GTATTGTTGCCCCAGCCGT 60.678 57.895 0.00 0.00 38.69 5.68
655 695 1.377987 TATTGTTGCCCCAGCCGTC 60.378 57.895 0.00 0.00 38.69 4.79
656 696 2.130821 TATTGTTGCCCCAGCCGTCA 62.131 55.000 0.00 0.00 38.69 4.35
657 697 4.947147 TGTTGCCCCAGCCGTCAC 62.947 66.667 0.00 0.00 38.69 3.67
658 698 4.643387 GTTGCCCCAGCCGTCACT 62.643 66.667 0.00 0.00 38.69 3.41
659 699 2.925706 TTGCCCCAGCCGTCACTA 60.926 61.111 0.00 0.00 38.69 2.74
660 700 2.297895 TTGCCCCAGCCGTCACTAT 61.298 57.895 0.00 0.00 38.69 2.12
661 701 2.203070 GCCCCAGCCGTCACTATG 60.203 66.667 0.00 0.00 0.00 2.23
662 702 2.731571 GCCCCAGCCGTCACTATGA 61.732 63.158 0.00 0.00 0.00 2.15
663 703 1.443407 CCCCAGCCGTCACTATGAG 59.557 63.158 0.00 0.00 0.00 2.90
664 704 1.330655 CCCCAGCCGTCACTATGAGT 61.331 60.000 0.00 0.00 0.00 3.41
665 705 1.399714 CCCAGCCGTCACTATGAGTA 58.600 55.000 0.00 0.00 0.00 2.59
666 706 1.067212 CCCAGCCGTCACTATGAGTAC 59.933 57.143 0.00 0.00 0.00 2.73
667 707 1.268589 CCAGCCGTCACTATGAGTACG 60.269 57.143 0.00 0.00 35.20 3.67
668 708 1.669265 CAGCCGTCACTATGAGTACGA 59.331 52.381 0.00 0.00 37.53 3.43
669 709 2.290916 CAGCCGTCACTATGAGTACGAT 59.709 50.000 0.00 0.00 37.53 3.73
670 710 2.950309 AGCCGTCACTATGAGTACGATT 59.050 45.455 0.00 0.00 37.53 3.34
671 711 3.380637 AGCCGTCACTATGAGTACGATTT 59.619 43.478 0.00 0.00 37.53 2.17
672 712 3.729716 GCCGTCACTATGAGTACGATTTC 59.270 47.826 0.00 0.00 37.53 2.17
673 713 4.732647 GCCGTCACTATGAGTACGATTTCA 60.733 45.833 0.00 0.00 37.53 2.69
674 714 4.970611 CCGTCACTATGAGTACGATTTCAG 59.029 45.833 0.00 0.00 37.53 3.02
675 715 5.220796 CCGTCACTATGAGTACGATTTCAGA 60.221 44.000 0.00 0.00 37.53 3.27
676 716 6.431278 CGTCACTATGAGTACGATTTCAGAT 58.569 40.000 0.00 0.00 37.53 2.90
677 717 6.358294 CGTCACTATGAGTACGATTTCAGATG 59.642 42.308 0.00 0.00 37.53 2.90
678 718 7.197017 GTCACTATGAGTACGATTTCAGATGT 58.803 38.462 0.00 0.00 0.00 3.06
679 719 7.702772 GTCACTATGAGTACGATTTCAGATGTT 59.297 37.037 0.00 0.00 0.00 2.71
680 720 7.702348 TCACTATGAGTACGATTTCAGATGTTG 59.298 37.037 0.00 0.00 0.00 3.33
681 721 7.489435 CACTATGAGTACGATTTCAGATGTTGT 59.511 37.037 0.00 0.00 0.00 3.32
682 722 8.035394 ACTATGAGTACGATTTCAGATGTTGTT 58.965 33.333 0.00 0.00 0.00 2.83
683 723 7.672983 ATGAGTACGATTTCAGATGTTGTTT 57.327 32.000 0.00 0.00 0.00 2.83
684 724 6.887368 TGAGTACGATTTCAGATGTTGTTTG 58.113 36.000 0.00 0.00 0.00 2.93
685 725 6.481976 TGAGTACGATTTCAGATGTTGTTTGT 59.518 34.615 0.00 0.00 0.00 2.83
686 726 7.654116 TGAGTACGATTTCAGATGTTGTTTGTA 59.346 33.333 0.00 0.00 0.00 2.41
687 727 8.547967 AGTACGATTTCAGATGTTGTTTGTAT 57.452 30.769 0.00 0.00 0.00 2.29
688 728 8.443160 AGTACGATTTCAGATGTTGTTTGTATG 58.557 33.333 0.00 0.00 0.00 2.39
689 729 6.611381 ACGATTTCAGATGTTGTTTGTATGG 58.389 36.000 0.00 0.00 0.00 2.74
690 730 6.429692 ACGATTTCAGATGTTGTTTGTATGGA 59.570 34.615 0.00 0.00 0.00 3.41
691 731 7.121168 ACGATTTCAGATGTTGTTTGTATGGAT 59.879 33.333 0.00 0.00 0.00 3.41
692 732 7.641411 CGATTTCAGATGTTGTTTGTATGGATC 59.359 37.037 0.00 0.00 0.00 3.36
693 733 6.421377 TTCAGATGTTGTTTGTATGGATCG 57.579 37.500 0.00 0.00 0.00 3.69
694 734 5.487433 TCAGATGTTGTTTGTATGGATCGT 58.513 37.500 0.00 0.00 0.00 3.73
695 735 5.937540 TCAGATGTTGTTTGTATGGATCGTT 59.062 36.000 0.00 0.00 0.00 3.85
696 736 6.023435 CAGATGTTGTTTGTATGGATCGTTG 58.977 40.000 0.00 0.00 0.00 4.10
697 737 5.937540 AGATGTTGTTTGTATGGATCGTTGA 59.062 36.000 0.00 0.00 0.00 3.18
698 738 6.599244 AGATGTTGTTTGTATGGATCGTTGAT 59.401 34.615 0.00 0.00 0.00 2.57
699 739 6.567687 TGTTGTTTGTATGGATCGTTGATT 57.432 33.333 0.00 0.00 0.00 2.57
700 740 6.976088 TGTTGTTTGTATGGATCGTTGATTT 58.024 32.000 0.00 0.00 0.00 2.17
701 741 8.100508 TGTTGTTTGTATGGATCGTTGATTTA 57.899 30.769 0.00 0.00 0.00 1.40
702 742 8.735315 TGTTGTTTGTATGGATCGTTGATTTAT 58.265 29.630 0.00 0.00 0.00 1.40
703 743 9.221775 GTTGTTTGTATGGATCGTTGATTTATC 57.778 33.333 0.00 0.00 0.00 1.75
704 744 7.925993 TGTTTGTATGGATCGTTGATTTATCC 58.074 34.615 0.00 0.00 39.76 2.59
711 751 7.202016 TGGATCGTTGATTTATCCATAAAGC 57.798 36.000 0.00 1.14 43.27 3.51
712 752 6.073276 TGGATCGTTGATTTATCCATAAAGCG 60.073 38.462 0.00 3.61 43.27 4.68
713 753 5.666969 TCGTTGATTTATCCATAAAGCGG 57.333 39.130 3.53 0.00 40.47 5.52
714 754 5.361427 TCGTTGATTTATCCATAAAGCGGA 58.639 37.500 3.53 0.00 40.47 5.54
715 755 5.818336 TCGTTGATTTATCCATAAAGCGGAA 59.182 36.000 3.53 0.00 40.47 4.30
716 756 6.485313 TCGTTGATTTATCCATAAAGCGGAAT 59.515 34.615 3.53 0.00 40.47 3.01
717 757 7.658167 TCGTTGATTTATCCATAAAGCGGAATA 59.342 33.333 3.53 0.00 40.47 1.75
718 758 8.286800 CGTTGATTTATCCATAAAGCGGAATAA 58.713 33.333 3.53 0.00 40.47 1.40
719 759 9.959749 GTTGATTTATCCATAAAGCGGAATAAA 57.040 29.630 3.53 0.00 40.47 1.40
722 762 9.129209 GATTTATCCATAAAGCGGAATAAAAGC 57.871 33.333 0.00 0.00 35.88 3.51
723 763 4.911514 TCCATAAAGCGGAATAAAAGCC 57.088 40.909 0.00 0.00 0.00 4.35
724 764 4.532834 TCCATAAAGCGGAATAAAAGCCT 58.467 39.130 0.00 0.00 0.00 4.58
725 765 5.686753 TCCATAAAGCGGAATAAAAGCCTA 58.313 37.500 0.00 0.00 0.00 3.93
726 766 6.303839 TCCATAAAGCGGAATAAAAGCCTAT 58.696 36.000 0.00 0.00 0.00 2.57
727 767 6.775629 TCCATAAAGCGGAATAAAAGCCTATT 59.224 34.615 0.00 0.00 0.00 1.73
728 768 7.286775 TCCATAAAGCGGAATAAAAGCCTATTT 59.713 33.333 0.00 0.00 0.00 1.40
729 769 7.595130 CCATAAAGCGGAATAAAAGCCTATTTC 59.405 37.037 0.00 0.00 0.00 2.17
730 770 4.813296 AGCGGAATAAAAGCCTATTTCG 57.187 40.909 6.99 6.99 41.36 3.46
731 771 4.448210 AGCGGAATAAAAGCCTATTTCGA 58.552 39.130 13.10 0.00 41.06 3.71
735 775 5.333416 CGGAATAAAAGCCTATTTCGAGAGC 60.333 44.000 5.86 0.00 41.06 4.09
739 779 0.528684 AGCCTATTTCGAGAGCGTGC 60.529 55.000 0.00 0.00 38.98 5.34
803 843 2.597578 AACTAAATGGGCCGGTTTCT 57.402 45.000 1.90 0.00 0.00 2.52
804 844 2.124277 ACTAAATGGGCCGGTTTCTC 57.876 50.000 1.90 0.00 0.00 2.87
805 845 1.014352 CTAAATGGGCCGGTTTCTCG 58.986 55.000 1.90 0.00 0.00 4.04
806 846 0.614294 TAAATGGGCCGGTTTCTCGA 59.386 50.000 1.90 0.00 0.00 4.04
807 847 0.250989 AAATGGGCCGGTTTCTCGAA 60.251 50.000 1.90 0.00 0.00 3.71
808 848 0.034477 AATGGGCCGGTTTCTCGAAT 60.034 50.000 1.90 0.00 0.00 3.34
809 849 0.834612 ATGGGCCGGTTTCTCGAATA 59.165 50.000 1.90 0.00 0.00 1.75
810 850 0.614294 TGGGCCGGTTTCTCGAATAA 59.386 50.000 1.90 0.00 0.00 1.40
811 851 1.296727 GGGCCGGTTTCTCGAATAAG 58.703 55.000 1.90 0.00 0.00 1.73
812 852 1.296727 GGCCGGTTTCTCGAATAAGG 58.703 55.000 1.90 0.00 0.00 2.69
813 853 1.296727 GCCGGTTTCTCGAATAAGGG 58.703 55.000 1.90 0.00 0.00 3.95
814 854 1.949465 CCGGTTTCTCGAATAAGGGG 58.051 55.000 0.00 0.00 0.00 4.79
815 855 1.474498 CCGGTTTCTCGAATAAGGGGG 60.474 57.143 0.00 0.00 0.00 5.40
842 882 1.603678 GGTGAACTGCGACCGAAACTA 60.604 52.381 0.00 0.00 0.00 2.24
863 906 6.292150 ACTAAGAACAAAAAGAGAGGTCCAG 58.708 40.000 0.00 0.00 0.00 3.86
864 907 4.092116 AGAACAAAAAGAGAGGTCCAGG 57.908 45.455 0.00 0.00 0.00 4.45
865 908 3.459969 AGAACAAAAAGAGAGGTCCAGGT 59.540 43.478 0.00 0.00 0.00 4.00
866 909 3.493767 ACAAAAAGAGAGGTCCAGGTC 57.506 47.619 0.00 0.00 0.00 3.85
867 910 2.106684 ACAAAAAGAGAGGTCCAGGTCC 59.893 50.000 0.00 0.00 0.00 4.46
894 937 2.025418 CGACACGTTACCAGCCCAC 61.025 63.158 0.00 0.00 0.00 4.61
901 944 0.178973 GTTACCAGCCCACCAGGTTT 60.179 55.000 0.00 0.00 38.26 3.27
908 951 1.830408 CCCACCAGGTTTGCGGAAA 60.830 57.895 0.00 0.00 0.00 3.13
915 958 2.338620 GTTTGCGGAAAGGCCCAC 59.661 61.111 0.93 0.00 0.00 4.61
917 960 1.901464 TTTGCGGAAAGGCCCACTC 60.901 57.895 0.00 0.00 0.00 3.51
1018 1061 2.202892 CTCGGCGAAACCCTAGCC 60.203 66.667 12.13 0.00 46.88 3.93
1026 1069 2.041206 GAAACCCTAGCCTAGCCCCG 62.041 65.000 0.00 0.00 0.00 5.73
1070 1116 1.522580 GGAGCAAGCCGAGATGTCC 60.523 63.158 0.00 0.00 0.00 4.02
1244 1290 2.117423 CGGCCTTCCAAACCCCTT 59.883 61.111 0.00 0.00 0.00 3.95
1259 1305 3.451890 ACCCCTTTCTCGGAGTAGAAAT 58.548 45.455 4.69 0.00 42.87 2.17
1260 1306 4.617593 ACCCCTTTCTCGGAGTAGAAATA 58.382 43.478 4.69 0.00 42.87 1.40
1268 1314 5.759963 TCTCGGAGTAGAAATAAATCGCTC 58.240 41.667 4.69 0.00 0.00 5.03
1271 1317 5.048921 TCGGAGTAGAAATAAATCGCTCGAT 60.049 40.000 0.00 0.00 36.23 3.59
1302 1348 0.250209 TTTGGTTTGGCCGCGTAGTA 60.250 50.000 4.92 0.00 41.21 1.82
1306 1352 1.447140 TTTGGCCGCGTAGTAGCTG 60.447 57.895 4.92 0.00 34.40 4.24
1313 1360 1.063811 GCGTAGTAGCTGGTCGTCC 59.936 63.158 0.00 0.00 0.00 4.79
1337 1386 3.592856 TAGGCGCGGGCTTTTTCGA 62.593 57.895 24.48 0.00 39.70 3.71
1382 1431 0.815615 CCTAGGGCGTTGGATTGAGC 60.816 60.000 0.00 0.00 0.00 4.26
1395 1444 4.419282 TGGATTGAGCCTCCTTGATTTTT 58.581 39.130 0.00 0.00 33.69 1.94
1398 1447 2.528564 TGAGCCTCCTTGATTTTTGGG 58.471 47.619 0.00 0.00 0.00 4.12
1402 1451 2.765699 GCCTCCTTGATTTTTGGGCATA 59.234 45.455 0.00 0.00 38.16 3.14
1421 1471 0.539986 AGGCGTGTGGTAATCCGAAT 59.460 50.000 0.00 0.00 36.30 3.34
1422 1472 1.758280 AGGCGTGTGGTAATCCGAATA 59.242 47.619 0.00 0.00 36.30 1.75
1475 1525 6.379988 GGTAGAATGGATTCTTTGGCCTTTTA 59.620 38.462 3.32 0.00 44.28 1.52
1478 1528 7.559486 AGAATGGATTCTTTGGCCTTTTATTC 58.441 34.615 3.32 2.53 44.28 1.75
1480 1530 6.678568 TGGATTCTTTGGCCTTTTATTCAA 57.321 33.333 3.32 0.00 0.00 2.69
1493 1545 6.295859 GCCTTTTATTCAAGGAGGGTGAATTT 60.296 38.462 3.55 0.00 45.79 1.82
1542 1594 7.458409 TGTCTATTTGGTTTAGACGACTAGT 57.542 36.000 0.00 0.00 45.56 2.57
1546 1598 3.293311 TGGTTTAGACGACTAGTGCAC 57.707 47.619 9.40 9.40 0.00 4.57
1560 1612 1.816224 AGTGCACGTTCTTGTTTGGTT 59.184 42.857 12.01 0.00 0.00 3.67
1573 1625 6.919721 TCTTGTTTGGTTATTTGATAGTGCC 58.080 36.000 0.00 0.00 0.00 5.01
1628 1682 6.898041 TCTTTTACGATTCACCTGTTTGATG 58.102 36.000 0.00 0.00 0.00 3.07
1629 1683 6.485313 TCTTTTACGATTCACCTGTTTGATGT 59.515 34.615 0.00 0.00 0.00 3.06
1642 1697 3.508402 TGTTTGATGTTGATGATGCAGCT 59.492 39.130 2.53 0.00 0.00 4.24
1646 1702 2.357327 TGTTGATGATGCAGCTTTGC 57.643 45.000 2.53 0.00 0.00 3.68
1663 1719 4.397417 GCTTTGCACTGAATCTGAGGTTAT 59.603 41.667 0.00 0.00 0.00 1.89
1664 1720 5.105997 GCTTTGCACTGAATCTGAGGTTATT 60.106 40.000 0.00 0.00 0.00 1.40
1678 1734 7.934457 TCTGAGGTTATTACATACGGTTAGTC 58.066 38.462 0.00 0.00 0.00 2.59
1679 1735 7.557358 TCTGAGGTTATTACATACGGTTAGTCA 59.443 37.037 0.00 0.00 0.00 3.41
1701 1757 8.867097 AGTCAGGTTTAATCTTTGTAGTCTGTA 58.133 33.333 0.00 0.00 0.00 2.74
1702 1758 9.654663 GTCAGGTTTAATCTTTGTAGTCTGTAT 57.345 33.333 0.00 0.00 0.00 2.29
1766 1822 2.477863 GCATTCGGATTTGGTACTGCAC 60.478 50.000 0.00 0.00 0.00 4.57
1767 1823 2.552599 TTCGGATTTGGTACTGCACA 57.447 45.000 0.00 0.00 0.00 4.57
1768 1824 2.552599 TCGGATTTGGTACTGCACAA 57.447 45.000 0.00 0.00 0.00 3.33
1769 1825 2.422597 TCGGATTTGGTACTGCACAAG 58.577 47.619 0.00 0.00 0.00 3.16
1770 1826 2.151202 CGGATTTGGTACTGCACAAGT 58.849 47.619 0.00 0.00 43.40 3.16
1771 1827 2.095768 CGGATTTGGTACTGCACAAGTG 60.096 50.000 0.00 0.00 40.26 3.16
1818 1874 4.797471 TGCAGCATGTAAAGTCATCAAAC 58.203 39.130 0.00 0.00 39.31 2.93
1843 1899 8.758829 ACAGTGTTGATAAGAACCTGTGATATA 58.241 33.333 0.00 0.00 36.66 0.86
1851 1907 2.859165 ACCTGTGATATATTGGGGCG 57.141 50.000 0.00 0.00 0.00 6.13
1874 1930 8.247562 GGCGAGATCTGTATAAGTAGAATGATT 58.752 37.037 0.00 0.00 0.00 2.57
1951 2252 6.368791 GGGTTGAGCTTGGATTTGAAAATTAC 59.631 38.462 0.00 0.00 0.00 1.89
1977 2279 8.675705 TGTGTTGGTAGATCCATGTTATATTG 57.324 34.615 0.00 0.00 46.60 1.90
2045 2348 7.881142 AGTGTTAATTATGCTTTTAGTGCACA 58.119 30.769 21.04 1.84 43.59 4.57
2046 2349 8.356657 AGTGTTAATTATGCTTTTAGTGCACAA 58.643 29.630 21.04 8.60 43.59 3.33
2047 2350 9.139174 GTGTTAATTATGCTTTTAGTGCACAAT 57.861 29.630 21.04 0.92 43.59 2.71
2048 2351 9.138062 TGTTAATTATGCTTTTAGTGCACAATG 57.862 29.630 21.04 8.86 43.59 2.82
2049 2352 6.651755 AATTATGCTTTTAGTGCACAATGC 57.348 33.333 21.04 18.15 43.59 3.56
2162 2467 2.526432 ACGGGAGTTAGTGATGTCTGT 58.474 47.619 0.00 0.00 43.33 3.41
2173 2478 5.290493 AGTGATGTCTGTTGTCTTGGTTA 57.710 39.130 0.00 0.00 0.00 2.85
2178 2483 4.448210 TGTCTGTTGTCTTGGTTACCTTC 58.552 43.478 2.07 0.00 0.00 3.46
2186 2491 5.064558 TGTCTTGGTTACCTTCGCAATAAA 58.935 37.500 2.07 0.00 0.00 1.40
2228 2590 5.466728 TGAACAGTACTTTCTTGCTCATGTC 59.533 40.000 14.65 0.00 0.00 3.06
2238 2600 2.093306 TGCTCATGTCGGTTAAGTGG 57.907 50.000 0.00 0.00 0.00 4.00
2258 2620 4.038642 GTGGTTGCCATTGAAGAGGTTTAA 59.961 41.667 0.00 0.00 35.28 1.52
2259 2621 4.280677 TGGTTGCCATTGAAGAGGTTTAAG 59.719 41.667 0.00 0.00 0.00 1.85
2260 2622 4.321974 GGTTGCCATTGAAGAGGTTTAAGG 60.322 45.833 0.00 0.00 0.00 2.69
2261 2623 2.825532 TGCCATTGAAGAGGTTTAAGGC 59.174 45.455 0.00 0.00 39.95 4.35
2262 2624 3.092301 GCCATTGAAGAGGTTTAAGGCT 58.908 45.455 0.00 0.00 36.72 4.58
2285 2647 6.458888 GCTTTAAGCTTGTCATGGAATACCTC 60.459 42.308 9.86 0.00 38.45 3.85
2287 2649 5.957771 AAGCTTGTCATGGAATACCTCTA 57.042 39.130 0.00 0.00 37.04 2.43
2399 2770 4.491676 TCATAGACGGTGCTGTAAAAGAC 58.508 43.478 0.00 0.00 0.00 3.01
2456 2828 6.047870 TGCATATCTTTTGCACACTTTTGTT 58.952 32.000 0.00 0.00 44.73 2.83
2463 2835 7.715657 TCTTTTGCACACTTTTGTTGAGATAT 58.284 30.769 0.00 0.00 31.66 1.63
2789 3196 7.545265 TATTTGTGAAATATGGCACAGCTTTTC 59.455 33.333 9.88 0.00 44.80 2.29
2796 3203 2.387757 TGGCACAGCTTTTCTCCTTTT 58.612 42.857 0.00 0.00 0.00 2.27
2798 3205 2.546584 GGCACAGCTTTTCTCCTTTTGG 60.547 50.000 0.00 0.00 42.21 3.28
2842 3249 9.151471 GAGTATGCTTGTTAGTTGATCAGTTTA 57.849 33.333 0.00 0.00 0.00 2.01
2847 3254 7.041372 TGCTTGTTAGTTGATCAGTTTACCTTC 60.041 37.037 0.00 0.00 0.00 3.46
2854 3261 6.647067 AGTTGATCAGTTTACCTTCTTTCTCG 59.353 38.462 0.00 0.00 0.00 4.04
2926 3337 1.002033 GCTTGCTTGAGTGTTCCACAG 60.002 52.381 0.00 0.00 36.74 3.66
2940 3351 3.719268 TCCACAGTATTGAGGCAACAT 57.281 42.857 0.00 0.00 35.29 2.71
2943 3354 5.565509 TCCACAGTATTGAGGCAACATTTA 58.434 37.500 0.00 0.00 35.29 1.40
2994 3405 5.943416 TCATGTCTTACCCAATTGTTCGATT 59.057 36.000 4.43 0.00 0.00 3.34
3081 3492 9.906660 GTTTCTACTGATATTCTCTATCTGTGG 57.093 37.037 12.34 10.34 36.95 4.17
3082 3493 7.695480 TCTACTGATATTCTCTATCTGTGGC 57.305 40.000 12.34 0.00 36.95 5.01
3083 3494 5.736951 ACTGATATTCTCTATCTGTGGCC 57.263 43.478 0.00 0.00 35.66 5.36
3096 3507 3.826524 TCTGTGGCCAATTCAACTGTTA 58.173 40.909 7.24 0.00 0.00 2.41
3110 3521 8.871686 ATTCAACTGTTAATCACAAGGAAAAC 57.128 30.769 0.00 0.00 33.87 2.43
3173 3585 3.757745 TTTGCTAATTAGAAGCCGTGC 57.242 42.857 16.85 0.00 39.30 5.34
3197 3609 5.228635 CGTATTCTGCTGCATTTGATTTCAC 59.771 40.000 1.31 0.00 0.00 3.18
3201 3613 6.270156 TCTGCTGCATTTGATTTCACATTA 57.730 33.333 1.31 0.00 0.00 1.90
3203 3615 6.754675 TCTGCTGCATTTGATTTCACATTATG 59.245 34.615 1.31 0.00 0.00 1.90
3204 3616 5.813157 TGCTGCATTTGATTTCACATTATGG 59.187 36.000 0.00 0.00 0.00 2.74
3205 3617 5.235616 GCTGCATTTGATTTCACATTATGGG 59.764 40.000 0.00 0.00 0.00 4.00
3206 3618 6.297080 TGCATTTGATTTCACATTATGGGT 57.703 33.333 0.00 0.00 0.00 4.51
3207 3619 6.709281 TGCATTTGATTTCACATTATGGGTT 58.291 32.000 0.00 0.00 0.00 4.11
3208 3620 6.594547 TGCATTTGATTTCACATTATGGGTTG 59.405 34.615 0.00 0.00 0.00 3.77
3209 3621 6.594937 GCATTTGATTTCACATTATGGGTTGT 59.405 34.615 0.00 0.00 0.00 3.32
3210 3622 7.413219 GCATTTGATTTCACATTATGGGTTGTG 60.413 37.037 0.00 0.00 43.61 3.33
3211 3623 5.070770 TGATTTCACATTATGGGTTGTGC 57.929 39.130 0.00 0.00 42.31 4.57
3215 3627 3.879998 TCACATTATGGGTTGTGCGTAT 58.120 40.909 0.00 0.00 42.31 3.06
3228 3662 6.401796 GGGTTGTGCGTATTCTGTACTTTTAG 60.402 42.308 0.00 0.00 0.00 1.85
3229 3663 6.401796 GGTTGTGCGTATTCTGTACTTTTAGG 60.402 42.308 0.00 0.00 0.00 2.69
3230 3664 5.172934 TGTGCGTATTCTGTACTTTTAGGG 58.827 41.667 0.00 0.00 0.00 3.53
3231 3665 5.173664 GTGCGTATTCTGTACTTTTAGGGT 58.826 41.667 0.00 0.00 0.00 4.34
3232 3666 5.640783 GTGCGTATTCTGTACTTTTAGGGTT 59.359 40.000 0.00 0.00 0.00 4.11
3234 3668 5.640783 GCGTATTCTGTACTTTTAGGGTTGT 59.359 40.000 0.00 0.00 0.00 3.32
3235 3669 6.401796 GCGTATTCTGTACTTTTAGGGTTGTG 60.402 42.308 0.00 0.00 0.00 3.33
3488 3943 2.153645 CACAGCTTGCACAGGTATGAA 58.846 47.619 0.00 0.00 27.76 2.57
3489 3944 2.095567 CACAGCTTGCACAGGTATGAAC 60.096 50.000 0.00 0.00 27.76 3.18
3556 4015 7.255942 CCTTCATTCCCTAAGACACATTGTTTT 60.256 37.037 0.00 0.00 0.00 2.43
3691 4150 1.208614 GGCAAGAAGTGAAGCTGCG 59.791 57.895 0.00 0.00 0.00 5.18
3692 4151 1.510480 GGCAAGAAGTGAAGCTGCGT 61.510 55.000 0.00 0.00 0.00 5.24
3792 4254 3.078837 TCATGCGACTTAAGAAAACCCC 58.921 45.455 10.09 0.00 0.00 4.95
3877 4339 0.234884 CTGGGTTTCGTTTCGTCAGC 59.765 55.000 0.00 0.00 0.00 4.26
3955 4417 2.229543 TGTTGCCAAATGTCTCTGCATC 59.770 45.455 0.00 0.00 0.00 3.91
3964 4429 6.127814 CCAAATGTCTCTGCATCAACACTTAT 60.128 38.462 0.00 0.00 0.00 1.73
4028 4493 2.461897 TTGCGACTCGGTTTGTTTTC 57.538 45.000 0.00 0.00 0.00 2.29
4077 4572 7.596749 TTTTGGTTTGAGCGTTTTGAAAATA 57.403 28.000 0.00 0.00 0.00 1.40
4078 4573 6.576551 TTGGTTTGAGCGTTTTGAAAATAC 57.423 33.333 0.00 0.00 0.00 1.89
4079 4574 5.651530 TGGTTTGAGCGTTTTGAAAATACA 58.348 33.333 0.00 0.00 0.00 2.29
4080 4575 6.276847 TGGTTTGAGCGTTTTGAAAATACAT 58.723 32.000 0.00 0.00 0.00 2.29
4081 4576 6.199908 TGGTTTGAGCGTTTTGAAAATACATG 59.800 34.615 0.00 0.00 0.00 3.21
4082 4577 6.419413 GGTTTGAGCGTTTTGAAAATACATGA 59.581 34.615 0.00 0.00 0.00 3.07
4083 4578 7.043059 GGTTTGAGCGTTTTGAAAATACATGAA 60.043 33.333 0.00 0.00 0.00 2.57
4117 4612 3.693578 TGCGATGGCATGTTCAATTCTAA 59.306 39.130 3.81 0.00 46.21 2.10
4118 4613 4.157472 TGCGATGGCATGTTCAATTCTAAA 59.843 37.500 3.81 0.00 46.21 1.85
4119 4614 5.163530 TGCGATGGCATGTTCAATTCTAAAT 60.164 36.000 3.81 0.00 46.21 1.40
4144 4639 7.525688 TTCTAATAGAAGAACTGAATGTGCG 57.474 36.000 0.00 0.00 30.54 5.34
4160 4655 4.678509 TGTGCGATAAGATGTTTTGGTC 57.321 40.909 0.00 0.00 0.00 4.02
4210 4795 8.321353 TCTTTCTAGAAGAACTGAAATGGCATA 58.679 33.333 5.12 0.00 33.26 3.14
4211 4796 9.118300 CTTTCTAGAAGAACTGAAATGGCATAT 57.882 33.333 5.12 0.00 33.26 1.78
4222 4807 6.321945 ACTGAAATGGCATATTAAGTGCATGA 59.678 34.615 15.09 2.28 44.25 3.07
4307 5379 7.978982 AGATTATGGAGAAAAATCACTGTTCG 58.021 34.615 0.00 0.00 33.06 3.95
4313 5385 5.795441 GGAGAAAAATCACTGTTCGCAATAC 59.205 40.000 0.00 0.00 0.00 1.89
4387 5472 7.604657 TCTCTAAATTTCTGATACTCCCTCC 57.395 40.000 0.00 0.00 0.00 4.30
4388 5473 7.366226 TCTCTAAATTTCTGATACTCCCTCCT 58.634 38.462 0.00 0.00 0.00 3.69
4389 5474 7.846823 TCTCTAAATTTCTGATACTCCCTCCTT 59.153 37.037 0.00 0.00 0.00 3.36
4560 5646 9.665719 TGATTTGATACTGTAAAGCTTCATGTA 57.334 29.630 0.00 1.85 0.00 2.29
4575 5661 9.899226 AAGCTTCATGTATTTTTCTACAAACTC 57.101 29.630 0.00 0.00 35.37 3.01
4645 5731 2.289506 ACTAAAAAGACACGGAGGGAGC 60.290 50.000 0.00 0.00 0.00 4.70
4652 5738 0.824759 ACACGGAGGGAGCATAGAAC 59.175 55.000 0.00 0.00 0.00 3.01
4669 5755 6.800892 GCATAGAACTCTTTTGAAGCAAAGAG 59.199 38.462 18.02 18.02 34.72 2.85
4671 5757 5.196695 AGAACTCTTTTGAAGCAAAGAGGT 58.803 37.500 21.62 17.80 35.28 3.85
4683 5769 2.517959 CAAAGAGGTCCTGAAATGGCA 58.482 47.619 0.00 0.00 0.00 4.92
4685 5771 2.978156 AGAGGTCCTGAAATGGCAAA 57.022 45.000 0.00 0.00 0.00 3.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.827284 GGAACAAAGGAGAGATGAAACCAA 59.173 41.667 0.00 0.00 0.00 3.67
2 3 4.657013 AGGAACAAAGGAGAGATGAAACC 58.343 43.478 0.00 0.00 0.00 3.27
4 5 8.940397 AAATTAGGAACAAAGGAGAGATGAAA 57.060 30.769 0.00 0.00 0.00 2.69
7 8 7.928307 TGAAATTAGGAACAAAGGAGAGATG 57.072 36.000 0.00 0.00 0.00 2.90
8 9 9.539194 AATTGAAATTAGGAACAAAGGAGAGAT 57.461 29.630 0.00 0.00 0.00 2.75
38 39 5.163663 ACTCACAAATCTGAGCAACGAAAAA 60.164 36.000 0.00 0.00 41.38 1.94
39 40 4.335315 ACTCACAAATCTGAGCAACGAAAA 59.665 37.500 0.00 0.00 41.38 2.29
40 41 3.876914 ACTCACAAATCTGAGCAACGAAA 59.123 39.130 0.00 0.00 41.38 3.46
41 42 3.466836 ACTCACAAATCTGAGCAACGAA 58.533 40.909 0.00 0.00 41.38 3.85
42 43 3.111853 ACTCACAAATCTGAGCAACGA 57.888 42.857 0.00 0.00 41.38 3.85
43 44 3.548587 CAACTCACAAATCTGAGCAACG 58.451 45.455 0.00 0.00 41.38 4.10
44 45 3.004106 AGCAACTCACAAATCTGAGCAAC 59.996 43.478 0.00 0.00 41.38 4.17
45 46 3.216800 AGCAACTCACAAATCTGAGCAA 58.783 40.909 0.00 0.00 41.38 3.91
46 47 2.810274 GAGCAACTCACAAATCTGAGCA 59.190 45.455 0.00 0.00 41.38 4.26
47 48 2.159734 CGAGCAACTCACAAATCTGAGC 60.160 50.000 0.00 0.00 41.38 4.26
48 49 3.062763 ACGAGCAACTCACAAATCTGAG 58.937 45.455 0.00 0.00 43.06 3.35
49 50 2.802247 CACGAGCAACTCACAAATCTGA 59.198 45.455 0.00 0.00 0.00 3.27
50 51 2.545526 ACACGAGCAACTCACAAATCTG 59.454 45.455 0.00 0.00 0.00 2.90
51 52 2.545526 CACACGAGCAACTCACAAATCT 59.454 45.455 0.00 0.00 0.00 2.40
52 53 2.287915 ACACACGAGCAACTCACAAATC 59.712 45.455 0.00 0.00 0.00 2.17
53 54 2.288666 ACACACGAGCAACTCACAAAT 58.711 42.857 0.00 0.00 0.00 2.32
54 55 1.732941 ACACACGAGCAACTCACAAA 58.267 45.000 0.00 0.00 0.00 2.83
55 56 1.396648 CAACACACGAGCAACTCACAA 59.603 47.619 0.00 0.00 0.00 3.33
56 57 1.006086 CAACACACGAGCAACTCACA 58.994 50.000 0.00 0.00 0.00 3.58
57 58 1.006832 ACAACACACGAGCAACTCAC 58.993 50.000 0.00 0.00 0.00 3.51
58 59 1.006086 CACAACACACGAGCAACTCA 58.994 50.000 0.00 0.00 0.00 3.41
59 60 1.286501 TCACAACACACGAGCAACTC 58.713 50.000 0.00 0.00 0.00 3.01
60 61 1.599071 CATCACAACACACGAGCAACT 59.401 47.619 0.00 0.00 0.00 3.16
61 62 1.330521 ACATCACAACACACGAGCAAC 59.669 47.619 0.00 0.00 0.00 4.17
62 63 1.662517 ACATCACAACACACGAGCAA 58.337 45.000 0.00 0.00 0.00 3.91
63 64 2.403259 CTACATCACAACACACGAGCA 58.597 47.619 0.00 0.00 0.00 4.26
64 65 1.726791 CCTACATCACAACACACGAGC 59.273 52.381 0.00 0.00 0.00 5.03
65 66 3.026630 ACCTACATCACAACACACGAG 57.973 47.619 0.00 0.00 0.00 4.18
66 67 3.462483 AACCTACATCACAACACACGA 57.538 42.857 0.00 0.00 0.00 4.35
67 68 4.201871 ACAAAACCTACATCACAACACACG 60.202 41.667 0.00 0.00 0.00 4.49
68 69 5.243426 ACAAAACCTACATCACAACACAC 57.757 39.130 0.00 0.00 0.00 3.82
69 70 5.906113 AACAAAACCTACATCACAACACA 57.094 34.783 0.00 0.00 0.00 3.72
70 71 7.096230 GCATTAACAAAACCTACATCACAACAC 60.096 37.037 0.00 0.00 0.00 3.32
71 72 6.920758 GCATTAACAAAACCTACATCACAACA 59.079 34.615 0.00 0.00 0.00 3.33
72 73 7.145323 AGCATTAACAAAACCTACATCACAAC 58.855 34.615 0.00 0.00 0.00 3.32
73 74 7.230510 AGAGCATTAACAAAACCTACATCACAA 59.769 33.333 0.00 0.00 0.00 3.33
74 75 6.714810 AGAGCATTAACAAAACCTACATCACA 59.285 34.615 0.00 0.00 0.00 3.58
75 76 7.119846 AGAGAGCATTAACAAAACCTACATCAC 59.880 37.037 0.00 0.00 0.00 3.06
76 77 7.168219 AGAGAGCATTAACAAAACCTACATCA 58.832 34.615 0.00 0.00 0.00 3.07
77 78 7.617041 AGAGAGCATTAACAAAACCTACATC 57.383 36.000 0.00 0.00 0.00 3.06
78 79 7.448469 ACAAGAGAGCATTAACAAAACCTACAT 59.552 33.333 0.00 0.00 0.00 2.29
79 80 6.770785 ACAAGAGAGCATTAACAAAACCTACA 59.229 34.615 0.00 0.00 0.00 2.74
80 81 7.203255 ACAAGAGAGCATTAACAAAACCTAC 57.797 36.000 0.00 0.00 0.00 3.18
81 82 7.817418 AACAAGAGAGCATTAACAAAACCTA 57.183 32.000 0.00 0.00 0.00 3.08
82 83 6.715347 AACAAGAGAGCATTAACAAAACCT 57.285 33.333 0.00 0.00 0.00 3.50
83 84 7.871853 TCTAACAAGAGAGCATTAACAAAACC 58.128 34.615 0.00 0.00 0.00 3.27
84 85 9.334693 CATCTAACAAGAGAGCATTAACAAAAC 57.665 33.333 0.00 0.00 0.00 2.43
85 86 8.023128 GCATCTAACAAGAGAGCATTAACAAAA 58.977 33.333 0.00 0.00 0.00 2.44
86 87 7.174772 TGCATCTAACAAGAGAGCATTAACAAA 59.825 33.333 2.36 0.00 30.02 2.83
87 88 6.654582 TGCATCTAACAAGAGAGCATTAACAA 59.345 34.615 2.36 0.00 30.02 2.83
88 89 6.172630 TGCATCTAACAAGAGAGCATTAACA 58.827 36.000 2.36 0.00 30.02 2.41
89 90 6.668541 TGCATCTAACAAGAGAGCATTAAC 57.331 37.500 2.36 0.00 30.02 2.01
90 91 6.825213 ACATGCATCTAACAAGAGAGCATTAA 59.175 34.615 12.61 0.00 37.80 1.40
91 92 6.259387 CACATGCATCTAACAAGAGAGCATTA 59.741 38.462 12.61 0.00 37.80 1.90
92 93 5.066117 CACATGCATCTAACAAGAGAGCATT 59.934 40.000 12.61 5.55 37.80 3.56
99 100 7.661437 AGAAACTAACACATGCATCTAACAAGA 59.339 33.333 0.00 0.00 0.00 3.02
133 134 4.636206 GCAGAAAATAGAACCGGACAAGAT 59.364 41.667 9.46 0.00 0.00 2.40
139 140 2.027192 AGCTGCAGAAAATAGAACCGGA 60.027 45.455 20.43 0.00 0.00 5.14
141 142 4.433615 TCTAGCTGCAGAAAATAGAACCG 58.566 43.478 20.43 0.00 0.00 4.44
192 214 1.117234 CTTTTTCAAACCCGCGAACG 58.883 50.000 8.23 0.00 39.67 3.95
196 218 2.196295 TGAACTTTTTCAAACCCGCG 57.804 45.000 0.00 0.00 38.87 6.46
197 219 3.712187 TCATGAACTTTTTCAAACCCGC 58.288 40.909 0.00 0.00 45.01 6.13
229 251 7.908082 CACGAAATTTTCTCAAGTTAGTGAACA 59.092 33.333 7.50 0.00 38.10 3.18
305 327 9.260002 ACTTTCATGAATTTTTAGCGTTGATTT 57.740 25.926 9.40 0.00 0.00 2.17
306 328 8.816640 ACTTTCATGAATTTTTAGCGTTGATT 57.183 26.923 9.40 0.00 0.00 2.57
307 329 8.702438 CAACTTTCATGAATTTTTAGCGTTGAT 58.298 29.630 9.40 0.00 31.27 2.57
308 330 7.918033 TCAACTTTCATGAATTTTTAGCGTTGA 59.082 29.630 9.40 13.39 35.08 3.18
309 331 8.060020 TCAACTTTCATGAATTTTTAGCGTTG 57.940 30.769 9.40 11.68 0.00 4.10
364 386 5.277825 TGCGTGAAATTTTCTCAAATTCGT 58.722 33.333 10.33 0.00 41.02 3.85
365 387 5.804449 TGCGTGAAATTTTCTCAAATTCG 57.196 34.783 10.33 5.44 41.02 3.34
399 421 9.709495 ACATAACTTTCATACAATGCACAAATT 57.291 25.926 0.00 0.00 0.00 1.82
455 495 7.062839 CGGTCTTTTTGTTTTCTTGTTTCATGA 59.937 33.333 0.00 0.00 0.00 3.07
457 497 7.093992 TCGGTCTTTTTGTTTTCTTGTTTCAT 58.906 30.769 0.00 0.00 0.00 2.57
492 532 8.548721 CGTCCGCATTTAGTCTCTTTTATATTT 58.451 33.333 0.00 0.00 0.00 1.40
493 533 7.709613 ACGTCCGCATTTAGTCTCTTTTATATT 59.290 33.333 0.00 0.00 0.00 1.28
494 534 7.169308 CACGTCCGCATTTAGTCTCTTTTATAT 59.831 37.037 0.00 0.00 0.00 0.86
495 535 6.474427 CACGTCCGCATTTAGTCTCTTTTATA 59.526 38.462 0.00 0.00 0.00 0.98
497 537 4.624024 CACGTCCGCATTTAGTCTCTTTTA 59.376 41.667 0.00 0.00 0.00 1.52
502 542 2.273370 TCACGTCCGCATTTAGTCTC 57.727 50.000 0.00 0.00 0.00 3.36
504 544 2.735134 ACTTTCACGTCCGCATTTAGTC 59.265 45.455 0.00 0.00 0.00 2.59
516 556 2.375146 AGCTTCCCAAAACTTTCACGT 58.625 42.857 0.00 0.00 0.00 4.49
528 568 2.426522 CTCGTGAAATGAAGCTTCCCA 58.573 47.619 23.42 12.83 0.00 4.37
545 585 4.415501 GCAACGCACACTCGCTCG 62.416 66.667 0.00 0.00 0.00 5.03
565 605 3.451402 TTAGTCTGACCTAGTGGCTGA 57.549 47.619 3.76 0.00 36.63 4.26
566 606 4.437239 CATTTAGTCTGACCTAGTGGCTG 58.563 47.826 3.76 0.00 36.63 4.85
567 607 3.118592 GCATTTAGTCTGACCTAGTGGCT 60.119 47.826 3.76 0.00 36.63 4.75
568 608 3.198872 GCATTTAGTCTGACCTAGTGGC 58.801 50.000 3.76 0.00 36.63 5.01
569 609 3.448686 CGCATTTAGTCTGACCTAGTGG 58.551 50.000 3.76 0.00 39.83 4.00
570 610 3.130516 TCCGCATTTAGTCTGACCTAGTG 59.869 47.826 3.76 1.47 0.00 2.74
571 611 3.130693 GTCCGCATTTAGTCTGACCTAGT 59.869 47.826 3.76 0.00 0.00 2.57
572 612 3.707793 GTCCGCATTTAGTCTGACCTAG 58.292 50.000 3.76 0.00 0.00 3.02
573 613 2.098607 CGTCCGCATTTAGTCTGACCTA 59.901 50.000 3.76 0.00 0.00 3.08
574 614 1.135083 CGTCCGCATTTAGTCTGACCT 60.135 52.381 3.76 0.00 0.00 3.85
575 615 1.278238 CGTCCGCATTTAGTCTGACC 58.722 55.000 3.76 0.00 0.00 4.02
576 616 1.654105 CACGTCCGCATTTAGTCTGAC 59.346 52.381 0.00 0.00 0.00 3.51
577 617 1.542472 TCACGTCCGCATTTAGTCTGA 59.458 47.619 0.00 0.00 0.00 3.27
578 618 1.990799 TCACGTCCGCATTTAGTCTG 58.009 50.000 0.00 0.00 0.00 3.51
579 619 2.736144 TTCACGTCCGCATTTAGTCT 57.264 45.000 0.00 0.00 0.00 3.24
580 620 2.735134 ACTTTCACGTCCGCATTTAGTC 59.265 45.455 0.00 0.00 0.00 2.59
581 621 2.762745 ACTTTCACGTCCGCATTTAGT 58.237 42.857 0.00 0.00 0.00 2.24
582 622 3.806316 AACTTTCACGTCCGCATTTAG 57.194 42.857 0.00 0.00 0.00 1.85
583 623 4.529446 GAAAACTTTCACGTCCGCATTTA 58.471 39.130 0.00 0.00 37.15 1.40
584 624 3.368495 GAAAACTTTCACGTCCGCATTT 58.632 40.909 0.00 0.00 37.15 2.32
585 625 2.601266 CGAAAACTTTCACGTCCGCATT 60.601 45.455 3.28 0.00 37.01 3.56
586 626 1.070175 CGAAAACTTTCACGTCCGCAT 60.070 47.619 3.28 0.00 37.01 4.73
587 627 0.302288 CGAAAACTTTCACGTCCGCA 59.698 50.000 3.28 0.00 37.01 5.69
588 628 0.578211 TCGAAAACTTTCACGTCCGC 59.422 50.000 3.28 0.00 37.01 5.54
589 629 3.515071 AATCGAAAACTTTCACGTCCG 57.485 42.857 0.00 0.00 37.01 4.79
590 630 5.050295 AGAGAAATCGAAAACTTTCACGTCC 60.050 40.000 10.85 0.00 37.01 4.79
591 631 5.975442 AGAGAAATCGAAAACTTTCACGTC 58.025 37.500 10.85 1.90 37.01 4.34
592 632 5.986004 AGAGAAATCGAAAACTTTCACGT 57.014 34.783 10.85 0.00 37.01 4.49
593 633 6.357240 GGAAAGAGAAATCGAAAACTTTCACG 59.643 38.462 22.25 0.00 42.41 4.35
594 634 7.418408 AGGAAAGAGAAATCGAAAACTTTCAC 58.582 34.615 22.25 13.46 42.41 3.18
595 635 7.568199 AGGAAAGAGAAATCGAAAACTTTCA 57.432 32.000 22.25 0.00 42.41 2.69
596 636 8.858003 AAAGGAAAGAGAAATCGAAAACTTTC 57.142 30.769 17.30 17.30 40.97 2.62
597 637 8.687242 AGAAAGGAAAGAGAAATCGAAAACTTT 58.313 29.630 0.00 0.00 0.00 2.66
598 638 8.226819 AGAAAGGAAAGAGAAATCGAAAACTT 57.773 30.769 0.00 0.00 0.00 2.66
599 639 7.809546 AGAAAGGAAAGAGAAATCGAAAACT 57.190 32.000 0.00 0.00 0.00 2.66
600 640 8.746751 CAAAGAAAGGAAAGAGAAATCGAAAAC 58.253 33.333 0.00 0.00 0.00 2.43
601 641 7.920682 CCAAAGAAAGGAAAGAGAAATCGAAAA 59.079 33.333 0.00 0.00 0.00 2.29
602 642 7.425606 CCAAAGAAAGGAAAGAGAAATCGAAA 58.574 34.615 0.00 0.00 0.00 3.46
603 643 6.016276 CCCAAAGAAAGGAAAGAGAAATCGAA 60.016 38.462 0.00 0.00 0.00 3.71
604 644 5.473504 CCCAAAGAAAGGAAAGAGAAATCGA 59.526 40.000 0.00 0.00 0.00 3.59
605 645 5.703876 CCCAAAGAAAGGAAAGAGAAATCG 58.296 41.667 0.00 0.00 0.00 3.34
606 646 5.011023 TGCCCAAAGAAAGGAAAGAGAAATC 59.989 40.000 0.00 0.00 0.00 2.17
607 647 4.901250 TGCCCAAAGAAAGGAAAGAGAAAT 59.099 37.500 0.00 0.00 0.00 2.17
608 648 4.285863 TGCCCAAAGAAAGGAAAGAGAAA 58.714 39.130 0.00 0.00 0.00 2.52
609 649 3.909732 TGCCCAAAGAAAGGAAAGAGAA 58.090 40.909 0.00 0.00 0.00 2.87
610 650 3.593442 TGCCCAAAGAAAGGAAAGAGA 57.407 42.857 0.00 0.00 0.00 3.10
611 651 3.828451 TCATGCCCAAAGAAAGGAAAGAG 59.172 43.478 0.00 0.00 0.00 2.85
612 652 3.843422 TCATGCCCAAAGAAAGGAAAGA 58.157 40.909 0.00 0.00 0.00 2.52
613 653 4.813750 ATCATGCCCAAAGAAAGGAAAG 57.186 40.909 0.00 0.00 0.00 2.62
614 654 4.347583 ACAATCATGCCCAAAGAAAGGAAA 59.652 37.500 0.00 0.00 0.00 3.13
615 655 3.903090 ACAATCATGCCCAAAGAAAGGAA 59.097 39.130 0.00 0.00 0.00 3.36
616 656 3.509442 ACAATCATGCCCAAAGAAAGGA 58.491 40.909 0.00 0.00 0.00 3.36
617 657 3.967332 ACAATCATGCCCAAAGAAAGG 57.033 42.857 0.00 0.00 0.00 3.11
618 658 6.400568 ACAATACAATCATGCCCAAAGAAAG 58.599 36.000 0.00 0.00 0.00 2.62
619 659 6.357579 ACAATACAATCATGCCCAAAGAAA 57.642 33.333 0.00 0.00 0.00 2.52
620 660 5.999205 ACAATACAATCATGCCCAAAGAA 57.001 34.783 0.00 0.00 0.00 2.52
621 661 5.722263 CAACAATACAATCATGCCCAAAGA 58.278 37.500 0.00 0.00 0.00 2.52
622 662 4.330620 GCAACAATACAATCATGCCCAAAG 59.669 41.667 0.00 0.00 0.00 2.77
623 663 4.252073 GCAACAATACAATCATGCCCAAA 58.748 39.130 0.00 0.00 0.00 3.28
624 664 3.369261 GGCAACAATACAATCATGCCCAA 60.369 43.478 3.25 0.00 45.84 4.12
625 665 2.168106 GGCAACAATACAATCATGCCCA 59.832 45.455 3.25 0.00 45.84 5.36
626 666 2.825205 GGCAACAATACAATCATGCCC 58.175 47.619 3.25 0.00 45.84 5.36
628 668 2.168106 TGGGGCAACAATACAATCATGC 59.832 45.455 0.00 0.00 39.74 4.06
629 669 3.738899 GCTGGGGCAACAATACAATCATG 60.739 47.826 0.00 0.00 38.54 3.07
630 670 2.431782 GCTGGGGCAACAATACAATCAT 59.568 45.455 0.00 0.00 38.54 2.45
631 671 1.824230 GCTGGGGCAACAATACAATCA 59.176 47.619 0.00 0.00 38.54 2.57
632 672 1.136891 GGCTGGGGCAACAATACAATC 59.863 52.381 0.00 0.00 40.87 2.67
633 673 1.194218 GGCTGGGGCAACAATACAAT 58.806 50.000 0.00 0.00 40.87 2.71
634 674 1.247419 CGGCTGGGGCAACAATACAA 61.247 55.000 0.00 0.00 40.87 2.41
635 675 1.677300 CGGCTGGGGCAACAATACA 60.677 57.895 0.00 0.00 40.87 2.29
636 676 1.654023 GACGGCTGGGGCAACAATAC 61.654 60.000 0.00 0.00 40.87 1.89
637 677 1.377987 GACGGCTGGGGCAACAATA 60.378 57.895 0.00 0.00 40.87 1.90
638 678 2.676471 GACGGCTGGGGCAACAAT 60.676 61.111 0.00 0.00 40.87 2.71
639 679 4.196778 TGACGGCTGGGGCAACAA 62.197 61.111 0.00 0.00 40.87 2.83
640 680 4.947147 GTGACGGCTGGGGCAACA 62.947 66.667 0.00 0.00 40.87 3.33
641 681 2.536997 ATAGTGACGGCTGGGGCAAC 62.537 60.000 0.00 0.00 40.87 4.17
642 682 2.297895 ATAGTGACGGCTGGGGCAA 61.298 57.895 0.00 0.00 40.87 4.52
643 683 2.687200 ATAGTGACGGCTGGGGCA 60.687 61.111 0.00 0.00 40.87 5.36
644 684 2.203070 CATAGTGACGGCTGGGGC 60.203 66.667 0.00 0.00 37.82 5.80
645 685 1.330655 ACTCATAGTGACGGCTGGGG 61.331 60.000 0.00 0.00 0.00 4.96
646 686 1.067212 GTACTCATAGTGACGGCTGGG 59.933 57.143 0.00 0.00 0.00 4.45
647 687 1.268589 CGTACTCATAGTGACGGCTGG 60.269 57.143 0.00 0.00 0.00 4.85
648 688 1.669265 TCGTACTCATAGTGACGGCTG 59.331 52.381 0.00 0.00 36.02 4.85
649 689 2.034104 TCGTACTCATAGTGACGGCT 57.966 50.000 0.00 0.00 36.02 5.52
650 690 3.351020 AATCGTACTCATAGTGACGGC 57.649 47.619 0.00 0.00 36.02 5.68
651 691 4.916870 TGAAATCGTACTCATAGTGACGG 58.083 43.478 0.00 0.00 36.02 4.79
652 692 5.807344 TCTGAAATCGTACTCATAGTGACG 58.193 41.667 0.00 0.00 36.66 4.35
653 693 7.197017 ACATCTGAAATCGTACTCATAGTGAC 58.803 38.462 0.00 0.00 0.00 3.67
654 694 7.334844 ACATCTGAAATCGTACTCATAGTGA 57.665 36.000 0.00 0.00 0.00 3.41
655 695 7.489435 ACAACATCTGAAATCGTACTCATAGTG 59.511 37.037 0.00 0.00 0.00 2.74
656 696 7.548097 ACAACATCTGAAATCGTACTCATAGT 58.452 34.615 0.00 0.00 0.00 2.12
657 697 7.993821 ACAACATCTGAAATCGTACTCATAG 57.006 36.000 0.00 0.00 0.00 2.23
658 698 8.655970 CAAACAACATCTGAAATCGTACTCATA 58.344 33.333 0.00 0.00 0.00 2.15
659 699 7.173218 ACAAACAACATCTGAAATCGTACTCAT 59.827 33.333 0.00 0.00 0.00 2.90
660 700 6.481976 ACAAACAACATCTGAAATCGTACTCA 59.518 34.615 0.00 0.00 0.00 3.41
661 701 6.888430 ACAAACAACATCTGAAATCGTACTC 58.112 36.000 0.00 0.00 0.00 2.59
662 702 6.861065 ACAAACAACATCTGAAATCGTACT 57.139 33.333 0.00 0.00 0.00 2.73
663 703 7.692291 CCATACAAACAACATCTGAAATCGTAC 59.308 37.037 0.00 0.00 0.00 3.67
664 704 7.604545 TCCATACAAACAACATCTGAAATCGTA 59.395 33.333 0.00 0.00 0.00 3.43
665 705 6.429692 TCCATACAAACAACATCTGAAATCGT 59.570 34.615 0.00 0.00 0.00 3.73
666 706 6.841119 TCCATACAAACAACATCTGAAATCG 58.159 36.000 0.00 0.00 0.00 3.34
667 707 7.641411 CGATCCATACAAACAACATCTGAAATC 59.359 37.037 0.00 0.00 0.00 2.17
668 708 7.121168 ACGATCCATACAAACAACATCTGAAAT 59.879 33.333 0.00 0.00 0.00 2.17
669 709 6.429692 ACGATCCATACAAACAACATCTGAAA 59.570 34.615 0.00 0.00 0.00 2.69
670 710 5.937540 ACGATCCATACAAACAACATCTGAA 59.062 36.000 0.00 0.00 0.00 3.02
671 711 5.487433 ACGATCCATACAAACAACATCTGA 58.513 37.500 0.00 0.00 0.00 3.27
672 712 5.801350 ACGATCCATACAAACAACATCTG 57.199 39.130 0.00 0.00 0.00 2.90
673 713 5.937540 TCAACGATCCATACAAACAACATCT 59.062 36.000 0.00 0.00 0.00 2.90
674 714 6.176975 TCAACGATCCATACAAACAACATC 57.823 37.500 0.00 0.00 0.00 3.06
675 715 6.757897 ATCAACGATCCATACAAACAACAT 57.242 33.333 0.00 0.00 0.00 2.71
676 716 6.567687 AATCAACGATCCATACAAACAACA 57.432 33.333 0.00 0.00 0.00 3.33
677 717 9.221775 GATAAATCAACGATCCATACAAACAAC 57.778 33.333 0.00 0.00 0.00 3.32
678 718 8.402472 GGATAAATCAACGATCCATACAAACAA 58.598 33.333 0.00 0.00 39.23 2.83
679 719 7.554476 TGGATAAATCAACGATCCATACAAACA 59.446 33.333 0.00 0.00 43.34 2.83
680 720 7.925993 TGGATAAATCAACGATCCATACAAAC 58.074 34.615 0.00 0.00 43.34 2.93
688 728 6.307155 CGCTTTATGGATAAATCAACGATCC 58.693 40.000 0.00 0.00 39.77 3.36
689 729 6.147164 TCCGCTTTATGGATAAATCAACGATC 59.853 38.462 0.00 0.00 32.36 3.69
690 730 5.995282 TCCGCTTTATGGATAAATCAACGAT 59.005 36.000 0.00 0.00 32.36 3.73
691 731 5.361427 TCCGCTTTATGGATAAATCAACGA 58.639 37.500 0.00 0.00 32.36 3.85
692 732 5.666969 TCCGCTTTATGGATAAATCAACG 57.333 39.130 0.00 0.00 32.36 4.10
693 733 9.959749 TTTATTCCGCTTTATGGATAAATCAAC 57.040 29.630 0.00 0.00 34.91 3.18
696 736 9.129209 GCTTTTATTCCGCTTTATGGATAAATC 57.871 33.333 0.00 0.00 34.91 2.17
697 737 8.088365 GGCTTTTATTCCGCTTTATGGATAAAT 58.912 33.333 0.00 0.00 34.91 1.40
698 738 7.286775 AGGCTTTTATTCCGCTTTATGGATAAA 59.713 33.333 0.00 0.00 34.91 1.40
699 739 6.775629 AGGCTTTTATTCCGCTTTATGGATAA 59.224 34.615 0.00 0.00 34.91 1.75
700 740 6.303839 AGGCTTTTATTCCGCTTTATGGATA 58.696 36.000 0.00 0.00 34.91 2.59
701 741 5.140454 AGGCTTTTATTCCGCTTTATGGAT 58.860 37.500 0.00 0.00 34.91 3.41
702 742 4.532834 AGGCTTTTATTCCGCTTTATGGA 58.467 39.130 0.00 0.00 0.00 3.41
703 743 4.918810 AGGCTTTTATTCCGCTTTATGG 57.081 40.909 0.00 0.00 0.00 2.74
704 744 7.323656 CGAAATAGGCTTTTATTCCGCTTTATG 59.676 37.037 0.00 0.00 0.00 1.90
705 745 7.227910 TCGAAATAGGCTTTTATTCCGCTTTAT 59.772 33.333 0.00 0.00 0.00 1.40
706 746 6.539464 TCGAAATAGGCTTTTATTCCGCTTTA 59.461 34.615 0.00 0.00 0.00 1.85
707 747 5.355910 TCGAAATAGGCTTTTATTCCGCTTT 59.644 36.000 0.00 0.00 0.00 3.51
708 748 4.879545 TCGAAATAGGCTTTTATTCCGCTT 59.120 37.500 0.00 0.00 0.00 4.68
709 749 4.448210 TCGAAATAGGCTTTTATTCCGCT 58.552 39.130 0.00 0.00 0.00 5.52
710 750 4.510340 TCTCGAAATAGGCTTTTATTCCGC 59.490 41.667 0.00 0.00 0.00 5.54
711 751 5.333416 GCTCTCGAAATAGGCTTTTATTCCG 60.333 44.000 0.00 0.00 0.00 4.30
712 752 5.333416 CGCTCTCGAAATAGGCTTTTATTCC 60.333 44.000 0.00 0.00 38.10 3.01
713 753 5.234543 ACGCTCTCGAAATAGGCTTTTATTC 59.765 40.000 0.00 0.00 39.41 1.75
714 754 5.006746 CACGCTCTCGAAATAGGCTTTTATT 59.993 40.000 0.00 0.00 39.41 1.40
715 755 4.508124 CACGCTCTCGAAATAGGCTTTTAT 59.492 41.667 0.00 0.00 39.41 1.40
716 756 3.863424 CACGCTCTCGAAATAGGCTTTTA 59.137 43.478 0.00 0.00 39.41 1.52
717 757 2.673368 CACGCTCTCGAAATAGGCTTTT 59.327 45.455 0.00 0.00 39.41 2.27
718 758 2.271800 CACGCTCTCGAAATAGGCTTT 58.728 47.619 0.00 0.00 39.41 3.51
719 759 1.927895 CACGCTCTCGAAATAGGCTT 58.072 50.000 0.00 0.00 39.41 4.35
720 760 0.528684 GCACGCTCTCGAAATAGGCT 60.529 55.000 0.00 0.00 39.41 4.58
721 761 1.812214 CGCACGCTCTCGAAATAGGC 61.812 60.000 0.00 0.00 39.41 3.93
722 762 0.525668 ACGCACGCTCTCGAAATAGG 60.526 55.000 0.00 0.00 39.41 2.57
723 763 1.007011 CAACGCACGCTCTCGAAATAG 60.007 52.381 0.00 0.00 39.41 1.73
724 764 0.989164 CAACGCACGCTCTCGAAATA 59.011 50.000 0.00 0.00 39.41 1.40
725 765 1.781555 CAACGCACGCTCTCGAAAT 59.218 52.632 0.00 0.00 39.41 2.17
726 766 2.938823 GCAACGCACGCTCTCGAAA 61.939 57.895 0.00 0.00 39.41 3.46
727 767 3.403057 GCAACGCACGCTCTCGAA 61.403 61.111 0.00 0.00 39.41 3.71
731 771 4.961511 TTCCGCAACGCACGCTCT 62.962 61.111 0.00 0.00 0.00 4.09
735 775 1.059657 CTTCATTTCCGCAACGCACG 61.060 55.000 0.00 0.00 0.00 5.34
739 779 2.697431 TTTCCTTCATTTCCGCAACG 57.303 45.000 0.00 0.00 0.00 4.10
842 882 4.079730 ACCTGGACCTCTCTTTTTGTTCTT 60.080 41.667 0.00 0.00 0.00 2.52
864 907 4.773117 GTGTCGGAGCGGACGGAC 62.773 72.222 10.44 10.44 39.83 4.79
867 910 3.313007 TAACGTGTCGGAGCGGACG 62.313 63.158 0.00 0.00 39.83 4.79
894 937 2.650778 GCCTTTCCGCAAACCTGG 59.349 61.111 0.00 0.00 0.00 4.45
901 944 4.697756 CGAGTGGGCCTTTCCGCA 62.698 66.667 4.53 0.00 39.64 5.69
915 958 0.734253 CCTCTTGAGGTGAACGCGAG 60.734 60.000 15.93 0.00 0.00 5.03
917 960 0.734253 CTCCTCTTGAGGTGAACGCG 60.734 60.000 15.44 3.53 37.45 6.01
1227 1273 1.532604 GAAAGGGGTTTGGAAGGCCG 61.533 60.000 0.00 0.00 36.79 6.13
1228 1274 0.178932 AGAAAGGGGTTTGGAAGGCC 60.179 55.000 0.00 0.00 0.00 5.19
1229 1275 1.257743 GAGAAAGGGGTTTGGAAGGC 58.742 55.000 0.00 0.00 0.00 4.35
1231 1277 1.073284 TCCGAGAAAGGGGTTTGGAAG 59.927 52.381 0.00 0.00 0.00 3.46
1234 1280 0.400594 ACTCCGAGAAAGGGGTTTGG 59.599 55.000 1.33 0.00 43.91 3.28
1236 1282 2.898662 TCTACTCCGAGAAAGGGGTTT 58.101 47.619 1.33 0.00 43.91 3.27
1238 1284 3.451890 ATTTCTACTCCGAGAAAGGGGT 58.548 45.455 1.33 0.00 45.98 4.95
1242 1288 6.697892 AGCGATTTATTTCTACTCCGAGAAAG 59.302 38.462 1.33 0.00 45.98 2.62
1244 1290 6.145338 AGCGATTTATTTCTACTCCGAGAA 57.855 37.500 1.33 0.00 33.57 2.87
1268 1314 1.429021 CAAATCCACCACCGCATCG 59.571 57.895 0.00 0.00 0.00 3.84
1271 1317 0.757188 AAACCAAATCCACCACCGCA 60.757 50.000 0.00 0.00 0.00 5.69
1276 1322 1.467678 CGGCCAAACCAAATCCACCA 61.468 55.000 2.24 0.00 39.03 4.17
1302 1348 0.745128 CTACTCGAGGACGACCAGCT 60.745 60.000 18.41 0.00 43.81 4.24
1329 1378 2.574322 CACGCCAATCTGTCGAAAAAG 58.426 47.619 0.00 0.00 0.00 2.27
1330 1379 1.334599 GCACGCCAATCTGTCGAAAAA 60.335 47.619 0.00 0.00 0.00 1.94
1337 1386 2.753966 GCATCGCACGCCAATCTGT 61.754 57.895 0.00 0.00 0.00 3.41
1382 1431 3.385755 CCTATGCCCAAAAATCAAGGAGG 59.614 47.826 0.00 0.00 0.00 4.30
1395 1444 1.554583 TTACCACACGCCTATGCCCA 61.555 55.000 0.00 0.00 0.00 5.36
1398 1447 1.226746 GGATTACCACACGCCTATGC 58.773 55.000 0.00 0.00 35.97 3.14
1402 1451 0.539986 ATTCGGATTACCACACGCCT 59.460 50.000 0.00 0.00 35.59 5.52
1421 1471 3.124466 CCTCGCGTGAAACATGAACATTA 59.876 43.478 10.21 0.00 35.74 1.90
1422 1472 2.095768 CCTCGCGTGAAACATGAACATT 60.096 45.455 10.21 0.00 35.74 2.71
1475 1525 6.561294 TCCTAAAAATTCACCCTCCTTGAAT 58.439 36.000 0.00 0.00 44.00 2.57
1478 1528 6.857437 ATTCCTAAAAATTCACCCTCCTTG 57.143 37.500 0.00 0.00 0.00 3.61
1480 1530 7.872061 AAAATTCCTAAAAATTCACCCTCCT 57.128 32.000 0.00 0.00 0.00 3.69
1523 1575 4.689345 GTGCACTAGTCGTCTAAACCAAAT 59.311 41.667 10.32 0.00 0.00 2.32
1525 1577 3.645884 GTGCACTAGTCGTCTAAACCAA 58.354 45.455 10.32 0.00 0.00 3.67
1526 1578 2.351060 CGTGCACTAGTCGTCTAAACCA 60.351 50.000 16.19 0.00 0.00 3.67
1528 1580 2.926165 ACGTGCACTAGTCGTCTAAAC 58.074 47.619 16.19 0.00 32.26 2.01
1535 1587 1.767289 ACAAGAACGTGCACTAGTCG 58.233 50.000 16.19 3.38 0.00 4.18
1542 1594 4.640789 AATAACCAAACAAGAACGTGCA 57.359 36.364 0.00 0.00 0.00 4.57
1546 1598 7.060633 GCACTATCAAATAACCAAACAAGAACG 59.939 37.037 0.00 0.00 0.00 3.95
1601 1655 7.763356 TCAAACAGGTGAATCGTAAAAGAAAA 58.237 30.769 0.00 0.00 0.00 2.29
1619 1673 3.857665 GCTGCATCATCAACATCAAACAG 59.142 43.478 0.00 0.00 0.00 3.16
1642 1697 6.939730 TGTAATAACCTCAGATTCAGTGCAAA 59.060 34.615 0.00 0.00 0.00 3.68
1646 1702 7.382488 CCGTATGTAATAACCTCAGATTCAGTG 59.618 40.741 0.00 0.00 0.00 3.66
1663 1719 8.752187 AGATTAAACCTGACTAACCGTATGTAA 58.248 33.333 0.00 0.00 0.00 2.41
1664 1720 8.297470 AGATTAAACCTGACTAACCGTATGTA 57.703 34.615 0.00 0.00 0.00 2.29
1766 1822 8.746922 AGTGTTGATATTTTAATGTGCACTTG 57.253 30.769 19.41 0.00 30.50 3.16
1767 1823 8.796475 AGAGTGTTGATATTTTAATGTGCACTT 58.204 29.630 19.41 9.21 34.22 3.16
1768 1824 8.340618 AGAGTGTTGATATTTTAATGTGCACT 57.659 30.769 19.41 0.28 36.36 4.40
1769 1825 8.970691 AAGAGTGTTGATATTTTAATGTGCAC 57.029 30.769 10.75 10.75 0.00 4.57
1770 1826 9.979578 AAAAGAGTGTTGATATTTTAATGTGCA 57.020 25.926 0.00 0.00 0.00 4.57
1773 1829 9.979578 TGCAAAAGAGTGTTGATATTTTAATGT 57.020 25.926 0.00 0.00 0.00 2.71
1775 1831 9.143631 GCTGCAAAAGAGTGTTGATATTTTAAT 57.856 29.630 0.00 0.00 0.00 1.40
1786 1842 4.916983 TTACATGCTGCAAAAGAGTGTT 57.083 36.364 6.36 0.00 0.00 3.32
1818 1874 9.770097 ATATATCACAGGTTCTTATCAACACTG 57.230 33.333 0.00 0.00 33.86 3.66
1843 1899 3.904339 ACTTATACAGATCTCGCCCCAAT 59.096 43.478 0.00 0.00 0.00 3.16
1874 1930 6.756299 TGCTGTGAATAGTATGAATGCAAA 57.244 33.333 0.00 0.00 0.00 3.68
1882 1938 6.968904 GGACAAACATTGCTGTGAATAGTATG 59.031 38.462 0.00 0.00 35.22 2.39
1916 2216 2.690778 GCTCAACCCACACATCGCC 61.691 63.158 0.00 0.00 0.00 5.54
2021 2324 8.514136 TTGTGCACTAAAAGCATAATTAACAC 57.486 30.769 19.41 0.00 44.79 3.32
2161 2466 2.215196 TGCGAAGGTAACCAAGACAAC 58.785 47.619 0.00 0.00 37.17 3.32
2162 2467 2.623878 TGCGAAGGTAACCAAGACAA 57.376 45.000 0.00 0.00 37.17 3.18
2173 2478 3.146066 TGAAGTGCTTTATTGCGAAGGT 58.854 40.909 0.00 0.00 35.36 3.50
2228 2590 1.883275 TCAATGGCAACCACTTAACCG 59.117 47.619 0.00 0.00 35.80 4.44
2238 2600 4.809673 CCTTAAACCTCTTCAATGGCAAC 58.190 43.478 0.00 0.00 0.00 4.17
2258 2620 3.439857 TCCATGACAAGCTTAAAGCCT 57.560 42.857 0.00 0.00 43.77 4.58
2259 2621 4.725790 ATTCCATGACAAGCTTAAAGCC 57.274 40.909 0.00 0.00 43.77 4.35
2260 2622 5.358160 AGGTATTCCATGACAAGCTTAAAGC 59.642 40.000 0.00 0.00 37.61 3.51
2261 2623 6.825721 AGAGGTATTCCATGACAAGCTTAAAG 59.174 38.462 0.00 0.00 35.89 1.85
2262 2624 6.721318 AGAGGTATTCCATGACAAGCTTAAA 58.279 36.000 0.00 0.00 35.89 1.52
2328 2690 5.970317 TCAAGCATTTATGATGGCCATAG 57.030 39.130 20.84 4.02 38.82 2.23
2364 2735 7.123397 AGCACCGTCTATGATACAAGATATCAT 59.877 37.037 12.68 12.68 44.27 2.45
2378 2749 4.242475 TGTCTTTTACAGCACCGTCTATG 58.758 43.478 0.00 0.00 33.01 2.23
2399 2770 8.966069 ATATTCTGATCATATGATGAAGCCTG 57.034 34.615 22.86 11.39 43.50 4.85
2656 3032 7.095695 TGGACAATAAACAGCTATTTTAGGC 57.904 36.000 0.00 0.00 0.00 3.93
2695 3071 4.271661 TGATTGCCATACACACACATCAT 58.728 39.130 0.00 0.00 0.00 2.45
2762 3169 6.720112 AGCTGTGCCATATTTCACAAATAT 57.280 33.333 7.85 0.00 43.10 1.28
2763 3170 6.528537 AAGCTGTGCCATATTTCACAAATA 57.471 33.333 7.85 0.00 41.95 1.40
2764 3171 5.410355 AAGCTGTGCCATATTTCACAAAT 57.590 34.783 7.85 0.00 41.95 2.32
2765 3172 4.870123 AAGCTGTGCCATATTTCACAAA 57.130 36.364 7.85 0.00 41.95 2.83
2766 3173 4.870123 AAAGCTGTGCCATATTTCACAA 57.130 36.364 7.85 0.00 41.95 3.33
2798 3205 9.765795 AGCATACTCATGTATAGTTCCTTTTAC 57.234 33.333 0.00 0.00 37.28 2.01
2842 3249 1.202486 TCAACGCACGAGAAAGAAGGT 60.202 47.619 0.00 0.00 0.00 3.50
2847 3254 1.722751 GCATGTCAACGCACGAGAAAG 60.723 52.381 0.00 0.00 0.00 2.62
2854 3261 3.201726 ACTAAATGCATGTCAACGCAC 57.798 42.857 0.00 0.00 41.79 5.34
2898 3309 2.223641 ACACTCAAGCAAGCACAACATG 60.224 45.455 0.00 0.00 0.00 3.21
2975 3386 8.801882 AGAATTAATCGAACAATTGGGTAAGA 57.198 30.769 10.83 2.40 0.00 2.10
3071 3482 4.263462 ACAGTTGAATTGGCCACAGATAGA 60.263 41.667 3.88 0.00 0.00 1.98
3072 3483 4.012374 ACAGTTGAATTGGCCACAGATAG 58.988 43.478 3.88 0.00 0.00 2.08
3073 3484 4.032960 ACAGTTGAATTGGCCACAGATA 57.967 40.909 3.88 0.00 0.00 1.98
3074 3485 2.880443 ACAGTTGAATTGGCCACAGAT 58.120 42.857 3.88 0.00 0.00 2.90
3075 3486 2.363306 ACAGTTGAATTGGCCACAGA 57.637 45.000 3.88 0.00 0.00 3.41
3076 3487 4.582701 TTAACAGTTGAATTGGCCACAG 57.417 40.909 3.88 0.00 0.00 3.66
3077 3488 4.586421 TGATTAACAGTTGAATTGGCCACA 59.414 37.500 3.88 0.00 0.00 4.17
3078 3489 4.923281 GTGATTAACAGTTGAATTGGCCAC 59.077 41.667 3.88 0.00 0.00 5.01
3079 3490 4.586421 TGTGATTAACAGTTGAATTGGCCA 59.414 37.500 0.00 0.00 33.78 5.36
3080 3491 5.132897 TGTGATTAACAGTTGAATTGGCC 57.867 39.130 0.00 0.00 33.78 5.36
3081 3492 5.634859 CCTTGTGATTAACAGTTGAATTGGC 59.365 40.000 0.00 0.00 40.74 4.52
3082 3493 6.980593 TCCTTGTGATTAACAGTTGAATTGG 58.019 36.000 0.00 0.00 40.74 3.16
3083 3494 8.870160 TTTCCTTGTGATTAACAGTTGAATTG 57.130 30.769 0.00 0.00 40.74 2.32
3110 3521 6.777213 ACAGGTACACTATAGAGGAACTTG 57.223 41.667 6.78 10.33 41.55 3.16
3124 3536 4.280174 TCTGAAAGGACAGTACAGGTACAC 59.720 45.833 11.78 3.42 38.48 2.90
3159 3571 3.555956 CAGAATACGCACGGCTTCTAATT 59.444 43.478 8.43 0.00 0.00 1.40
3160 3572 3.123804 CAGAATACGCACGGCTTCTAAT 58.876 45.455 8.43 0.00 0.00 1.73
3173 3585 5.228635 GTGAAATCAAATGCAGCAGAATACG 59.771 40.000 0.00 0.00 0.00 3.06
3197 3609 4.335315 ACAGAATACGCACAACCCATAATG 59.665 41.667 0.00 0.00 0.00 1.90
3201 3613 2.489938 ACAGAATACGCACAACCCAT 57.510 45.000 0.00 0.00 0.00 4.00
3203 3615 2.968675 AGTACAGAATACGCACAACCC 58.031 47.619 0.00 0.00 0.00 4.11
3204 3616 5.352643 AAAAGTACAGAATACGCACAACC 57.647 39.130 0.00 0.00 0.00 3.77
3205 3617 6.401796 CCCTAAAAGTACAGAATACGCACAAC 60.402 42.308 0.00 0.00 0.00 3.32
3206 3618 5.640357 CCCTAAAAGTACAGAATACGCACAA 59.360 40.000 0.00 0.00 0.00 3.33
3207 3619 5.172934 CCCTAAAAGTACAGAATACGCACA 58.827 41.667 0.00 0.00 0.00 4.57
3208 3620 5.173664 ACCCTAAAAGTACAGAATACGCAC 58.826 41.667 0.00 0.00 0.00 5.34
3209 3621 5.410355 ACCCTAAAAGTACAGAATACGCA 57.590 39.130 0.00 0.00 0.00 5.24
3210 3622 5.640783 ACAACCCTAAAAGTACAGAATACGC 59.359 40.000 0.00 0.00 0.00 4.42
3211 3623 6.647895 ACACAACCCTAAAAGTACAGAATACG 59.352 38.462 0.00 0.00 0.00 3.06
3215 3627 6.181908 ACAACACAACCCTAAAAGTACAGAA 58.818 36.000 0.00 0.00 0.00 3.02
3228 3662 9.075519 GTAACTTAAGTTTTAACAACACAACCC 57.924 33.333 25.07 0.00 39.31 4.11
3229 3663 9.623350 TGTAACTTAAGTTTTAACAACACAACC 57.377 29.630 25.07 0.65 39.31 3.77
3335 3785 9.453572 AAGATGTGTATTGTATTGACATTCACT 57.546 29.630 0.00 0.00 34.86 3.41
3351 3801 9.855021 GGTTACAAAGCAATAAAAGATGTGTAT 57.145 29.630 0.00 0.00 0.00 2.29
3352 3802 8.851145 TGGTTACAAAGCAATAAAAGATGTGTA 58.149 29.630 0.00 0.00 35.70 2.90
3353 3803 7.721402 TGGTTACAAAGCAATAAAAGATGTGT 58.279 30.769 0.00 0.00 35.70 3.72
3354 3804 8.761575 ATGGTTACAAAGCAATAAAAGATGTG 57.238 30.769 0.00 0.00 42.83 3.21
3389 3844 1.462283 CACACGCTCATCTGTTGAAGG 59.538 52.381 0.00 0.00 32.78 3.46
3488 3943 1.774856 AGGTTGGCAGTGAAGTAAGGT 59.225 47.619 0.00 0.00 0.00 3.50
3489 3944 2.154462 CAGGTTGGCAGTGAAGTAAGG 58.846 52.381 0.00 0.00 0.00 2.69
3556 4015 5.994054 GCTTCTCATTGATCAGCTGGTAATA 59.006 40.000 15.13 0.00 0.00 0.98
3691 4150 1.719600 GACTCCTGTCAGATGCACAC 58.280 55.000 0.00 0.00 42.48 3.82
3692 4151 0.244721 CGACTCCTGTCAGATGCACA 59.755 55.000 0.00 0.00 43.06 4.57
3792 4254 2.343101 TGAGCGAAATACCAAACTCCG 58.657 47.619 0.00 0.00 0.00 4.63
3877 4339 2.794910 AGTTCACATTCACGAAGACACG 59.205 45.455 0.00 0.00 39.31 4.49
3938 4400 2.229543 TGTTGATGCAGAGACATTTGGC 59.770 45.455 0.00 0.00 0.00 4.52
3955 4417 2.226437 ACGCAGGAGCAAATAAGTGTTG 59.774 45.455 0.00 0.00 42.27 3.33
3964 4429 4.314740 AAAATAAACACGCAGGAGCAAA 57.685 36.364 0.00 0.00 42.27 3.68
4028 4493 4.020128 GGGCCCATCCTACTAGTAGAAATG 60.020 50.000 28.07 25.85 35.21 2.32
4077 4572 3.695556 TCGCATCCAATTCATGTTCATGT 59.304 39.130 11.73 0.00 0.00 3.21
4078 4573 4.295857 TCGCATCCAATTCATGTTCATG 57.704 40.909 6.46 6.46 0.00 3.07
4079 4574 4.261867 CCATCGCATCCAATTCATGTTCAT 60.262 41.667 0.00 0.00 0.00 2.57
4080 4575 3.067040 CCATCGCATCCAATTCATGTTCA 59.933 43.478 0.00 0.00 0.00 3.18
4081 4576 3.635331 CCATCGCATCCAATTCATGTTC 58.365 45.455 0.00 0.00 0.00 3.18
4082 4577 2.223876 GCCATCGCATCCAATTCATGTT 60.224 45.455 0.00 0.00 34.03 2.71
4083 4578 1.338973 GCCATCGCATCCAATTCATGT 59.661 47.619 0.00 0.00 34.03 3.21
4118 4613 8.607459 CGCACATTCAGTTCTTCTATTAGAAAT 58.393 33.333 7.51 0.00 36.01 2.17
4119 4614 7.817478 TCGCACATTCAGTTCTTCTATTAGAAA 59.183 33.333 7.51 0.00 36.01 2.52
4125 4620 7.492524 TCTTATCGCACATTCAGTTCTTCTAT 58.507 34.615 0.00 0.00 0.00 1.98
4143 4638 4.387559 TGACACGACCAAAACATCTTATCG 59.612 41.667 0.00 0.00 0.00 2.92
4144 4639 5.178623 TGTGACACGACCAAAACATCTTATC 59.821 40.000 0.22 0.00 0.00 1.75
4160 4655 2.158645 TGTGTGTTTTCTGTGTGACACG 59.841 45.455 11.51 6.25 43.93 4.49
4278 5347 9.965902 ACAGTGATTTTTCTCCATAATCTAGTT 57.034 29.630 0.00 0.00 31.25 2.24
4299 5368 1.990799 TCTCCGTATTGCGAACAGTG 58.009 50.000 0.00 0.00 44.77 3.66
4306 5378 3.050619 GGAGTATGTTCTCCGTATTGCG 58.949 50.000 0.00 0.00 43.42 4.85
4396 5481 6.370166 AGACAAAGCTTCTATGCAGAGTTAAC 59.630 38.462 8.44 0.00 34.99 2.01
4411 5496 7.490402 CAGAAAGTTTGATTCAAGACAAAGCTT 59.510 33.333 0.00 0.00 36.81 3.74
4469 5555 7.902087 ACCTATTTGATACTCCTTCTAGATGC 58.098 38.462 0.00 0.00 0.00 3.91
4614 5700 6.328148 TCCGTGTCTTTTTAGTCCCCATATAT 59.672 38.462 0.00 0.00 0.00 0.86
4615 5701 5.662208 TCCGTGTCTTTTTAGTCCCCATATA 59.338 40.000 0.00 0.00 0.00 0.86
4616 5702 4.472108 TCCGTGTCTTTTTAGTCCCCATAT 59.528 41.667 0.00 0.00 0.00 1.78
4621 5707 2.614734 CCCTCCGTGTCTTTTTAGTCCC 60.615 54.545 0.00 0.00 0.00 4.46
4669 5755 1.203287 GAGCTTTGCCATTTCAGGACC 59.797 52.381 0.00 0.00 0.00 4.46
4671 5757 2.592102 AGAGCTTTGCCATTTCAGGA 57.408 45.000 0.00 0.00 0.00 3.86
4683 5769 3.366374 GCAAACCGCAGAAATAGAGCTTT 60.366 43.478 0.00 0.00 41.79 3.51
4685 5771 1.740025 GCAAACCGCAGAAATAGAGCT 59.260 47.619 0.00 0.00 41.79 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.