Multiple sequence alignment - TraesCS3A01G130300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G130300 chr3A 100.000 3961 0 0 1 3961 107406105 107402145 0.000000e+00 7315.0
1 TraesCS3A01G130300 chr3D 89.469 3124 166 51 474 3512 91226602 91223557 0.000000e+00 3795.0
2 TraesCS3A01G130300 chr3D 97.669 429 9 1 3534 3961 91223569 91223141 0.000000e+00 736.0
3 TraesCS3A01G130300 chr3B 89.181 2588 152 58 662 3193 140858126 140855611 0.000000e+00 3110.0
4 TraesCS3A01G130300 chr3B 90.937 651 39 8 3331 3961 140855288 140854638 0.000000e+00 857.0
5 TraesCS3A01G130300 chr3B 82.500 320 32 9 1 297 657786425 657786107 3.930000e-65 259.0
6 TraesCS3A01G130300 chr4D 84.762 315 27 7 1 297 498045525 498045836 2.990000e-76 296.0
7 TraesCS3A01G130300 chr5D 83.801 321 29 8 3 300 507510082 507509762 2.330000e-72 283.0
8 TraesCS3A01G130300 chr5D 83.750 320 27 15 1 297 478596425 478596742 3.010000e-71 279.0
9 TraesCS3A01G130300 chr5D 82.595 316 32 8 1 293 16748993 16748678 1.410000e-64 257.0
10 TraesCS3A01G130300 chr5D 79.538 303 32 10 1 275 34061736 34061436 5.230000e-44 189.0
11 TraesCS3A01G130300 chr5D 88.000 75 7 2 1277 1350 283356029 283355956 1.960000e-13 87.9
12 TraesCS3A01G130300 chr5A 84.127 315 23 17 1 297 68969939 68969634 3.010000e-71 279.0
13 TraesCS3A01G130300 chr5A 96.000 125 5 0 1 125 105432312 105432188 1.870000e-48 204.0
14 TraesCS3A01G130300 chr5A 94.574 129 7 0 1 129 524201371 524201243 2.410000e-47 200.0
15 TraesCS3A01G130300 chr5A 88.406 69 6 2 1283 1350 375573070 375573003 9.120000e-12 82.4
16 TraesCS3A01G130300 chr7D 81.761 318 29 8 1 295 164631800 164631489 5.120000e-59 239.0
17 TraesCS3A01G130300 chr2D 81.388 317 35 11 1 294 154390210 154390525 1.840000e-58 237.0
18 TraesCS3A01G130300 chr2A 80.923 325 35 20 1 300 603681643 603681321 8.560000e-57 231.0
19 TraesCS3A01G130300 chr2A 83.650 263 20 11 1 241 700529847 700530108 3.980000e-55 226.0
20 TraesCS3A01G130300 chr6B 80.374 321 39 8 1 297 320430551 320430871 5.150000e-54 222.0
21 TraesCS3A01G130300 chrUn 80.903 288 29 7 3 264 50799239 50798952 1.870000e-48 204.0
22 TraesCS3A01G130300 chr4B 83.254 209 18 4 3 195 667595900 667595693 4.070000e-40 176.0
23 TraesCS3A01G130300 chr7A 82.000 200 19 10 1 183 77696821 77697020 1.910000e-33 154.0
24 TraesCS3A01G130300 chr1D 92.222 90 5 2 1262 1350 112462202 112462290 4.160000e-25 126.0
25 TraesCS3A01G130300 chr1A 85.833 120 15 2 1700 1818 119704800 119704918 4.160000e-25 126.0
26 TraesCS3A01G130300 chr1A 92.045 88 5 2 1264 1350 119704070 119704156 5.380000e-24 122.0
27 TraesCS3A01G130300 chr1B 92.045 88 5 2 1264 1350 172001792 172001878 5.380000e-24 122.0
28 TraesCS3A01G130300 chr5B 88.406 69 6 2 1283 1350 321559466 321559399 9.120000e-12 82.4
29 TraesCS3A01G130300 chr5B 97.059 34 1 0 267 300 636932127 636932094 1.540000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G130300 chr3A 107402145 107406105 3960 True 7315.0 7315 100.000 1 3961 1 chr3A.!!$R1 3960
1 TraesCS3A01G130300 chr3D 91223141 91226602 3461 True 2265.5 3795 93.569 474 3961 2 chr3D.!!$R1 3487
2 TraesCS3A01G130300 chr3B 140854638 140858126 3488 True 1983.5 3110 90.059 662 3961 2 chr3B.!!$R2 3299

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
260 261 0.037697 ACTCGGCAAACATCGTAGCA 60.038 50.0 0.00 0.00 0.00 3.49 F
430 431 0.168128 CGAAATTTGGGCTGGTCGAC 59.832 55.0 7.13 7.13 0.00 4.20 F
504 505 0.179045 CGAAATGCGGAGGGGATCTT 60.179 55.0 0.00 0.00 36.03 2.40 F
1418 1482 0.032403 TACGTGACCGACCAACCAAG 59.968 55.0 0.00 0.00 37.88 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1414 1478 0.249280 GCGGGTTTGTTGGTTCTTGG 60.249 55.0 0.00 0.0 0.00 3.61 R
1419 1483 0.461163 GCAAAGCGGGTTTGTTGGTT 60.461 50.0 27.37 0.0 46.44 3.67 R
1639 1703 0.603975 GCAGAGGCTTCAGTTTCCGT 60.604 55.0 0.00 0.0 36.96 4.69 R
3095 3204 0.036577 AGAAGCTGCTGTAGGCTGTG 60.037 55.0 1.35 0.0 42.39 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.406692 CGGATCCTCTAACATTAAGAAGGA 57.593 41.667 10.75 0.00 0.00 3.36
24 25 6.817184 CGGATCCTCTAACATTAAGAAGGAA 58.183 40.000 10.75 0.00 29.80 3.36
25 26 7.272978 CGGATCCTCTAACATTAAGAAGGAAA 58.727 38.462 10.75 0.00 29.80 3.13
26 27 7.439655 CGGATCCTCTAACATTAAGAAGGAAAG 59.560 40.741 10.75 0.00 29.80 2.62
27 28 8.268605 GGATCCTCTAACATTAAGAAGGAAAGT 58.731 37.037 3.84 0.00 29.80 2.66
28 29 9.674068 GATCCTCTAACATTAAGAAGGAAAGTT 57.326 33.333 0.00 0.00 29.80 2.66
36 37 8.554835 ACATTAAGAAGGAAAGTTAGAGAAGC 57.445 34.615 0.00 0.00 0.00 3.86
37 38 8.379331 ACATTAAGAAGGAAAGTTAGAGAAGCT 58.621 33.333 0.00 0.00 0.00 3.74
38 39 9.877178 CATTAAGAAGGAAAGTTAGAGAAGCTA 57.123 33.333 0.00 0.00 0.00 3.32
39 40 9.878667 ATTAAGAAGGAAAGTTAGAGAAGCTAC 57.121 33.333 0.00 0.00 0.00 3.58
40 41 6.919775 AGAAGGAAAGTTAGAGAAGCTACA 57.080 37.500 0.00 0.00 0.00 2.74
41 42 7.304497 AGAAGGAAAGTTAGAGAAGCTACAA 57.696 36.000 0.00 0.00 0.00 2.41
42 43 7.912719 AGAAGGAAAGTTAGAGAAGCTACAAT 58.087 34.615 0.00 0.00 0.00 2.71
43 44 9.036980 AGAAGGAAAGTTAGAGAAGCTACAATA 57.963 33.333 0.00 0.00 0.00 1.90
44 45 9.089601 GAAGGAAAGTTAGAGAAGCTACAATAC 57.910 37.037 0.00 0.00 0.00 1.89
45 46 7.557724 AGGAAAGTTAGAGAAGCTACAATACC 58.442 38.462 0.00 0.00 0.00 2.73
46 47 6.476053 GGAAAGTTAGAGAAGCTACAATACCG 59.524 42.308 0.00 0.00 0.00 4.02
47 48 6.527057 AAGTTAGAGAAGCTACAATACCGT 57.473 37.500 0.00 0.00 0.00 4.83
48 49 7.636150 AAGTTAGAGAAGCTACAATACCGTA 57.364 36.000 0.00 0.00 0.00 4.02
49 50 7.636150 AGTTAGAGAAGCTACAATACCGTAA 57.364 36.000 0.00 0.00 0.00 3.18
50 51 7.479150 AGTTAGAGAAGCTACAATACCGTAAC 58.521 38.462 0.00 0.00 0.00 2.50
51 52 7.338957 AGTTAGAGAAGCTACAATACCGTAACT 59.661 37.037 0.00 0.00 0.00 2.24
52 53 6.527057 AGAGAAGCTACAATACCGTAACTT 57.473 37.500 0.00 0.00 31.98 2.66
53 54 6.932947 AGAGAAGCTACAATACCGTAACTTT 58.067 36.000 0.00 0.00 30.00 2.66
54 55 7.034397 AGAGAAGCTACAATACCGTAACTTTC 58.966 38.462 0.00 0.00 30.00 2.62
55 56 6.104665 AGAAGCTACAATACCGTAACTTTCC 58.895 40.000 0.00 0.00 30.00 3.13
56 57 5.672421 AGCTACAATACCGTAACTTTCCT 57.328 39.130 0.00 0.00 0.00 3.36
57 58 6.046290 AGCTACAATACCGTAACTTTCCTT 57.954 37.500 0.00 0.00 0.00 3.36
58 59 6.104665 AGCTACAATACCGTAACTTTCCTTC 58.895 40.000 0.00 0.00 0.00 3.46
59 60 6.070938 AGCTACAATACCGTAACTTTCCTTCT 60.071 38.462 0.00 0.00 0.00 2.85
60 61 6.592994 GCTACAATACCGTAACTTTCCTTCTT 59.407 38.462 0.00 0.00 0.00 2.52
61 62 7.118825 GCTACAATACCGTAACTTTCCTTCTTT 59.881 37.037 0.00 0.00 0.00 2.52
62 63 7.430992 ACAATACCGTAACTTTCCTTCTTTC 57.569 36.000 0.00 0.00 0.00 2.62
63 64 7.222161 ACAATACCGTAACTTTCCTTCTTTCT 58.778 34.615 0.00 0.00 0.00 2.52
64 65 8.370182 ACAATACCGTAACTTTCCTTCTTTCTA 58.630 33.333 0.00 0.00 0.00 2.10
65 66 9.379791 CAATACCGTAACTTTCCTTCTTTCTAT 57.620 33.333 0.00 0.00 0.00 1.98
66 67 9.597170 AATACCGTAACTTTCCTTCTTTCTATC 57.403 33.333 0.00 0.00 0.00 2.08
67 68 6.404708 ACCGTAACTTTCCTTCTTTCTATCC 58.595 40.000 0.00 0.00 0.00 2.59
68 69 6.013984 ACCGTAACTTTCCTTCTTTCTATCCA 60.014 38.462 0.00 0.00 0.00 3.41
69 70 7.048512 CCGTAACTTTCCTTCTTTCTATCCAT 58.951 38.462 0.00 0.00 0.00 3.41
70 71 8.202137 CCGTAACTTTCCTTCTTTCTATCCATA 58.798 37.037 0.00 0.00 0.00 2.74
71 72 9.765795 CGTAACTTTCCTTCTTTCTATCCATAT 57.234 33.333 0.00 0.00 0.00 1.78
140 141 8.661257 TCTATTGTGTACATTACCAAATTGACG 58.339 33.333 0.00 0.00 0.00 4.35
141 142 5.614923 TGTGTACATTACCAAATTGACGG 57.385 39.130 0.00 0.00 0.00 4.79
142 143 5.064558 TGTGTACATTACCAAATTGACGGT 58.935 37.500 0.00 0.65 39.41 4.83
143 144 5.049336 TGTGTACATTACCAAATTGACGGTG 60.049 40.000 0.00 0.00 36.69 4.94
144 145 5.179742 GTGTACATTACCAAATTGACGGTGA 59.820 40.000 0.00 0.00 36.69 4.02
145 146 5.763698 TGTACATTACCAAATTGACGGTGAA 59.236 36.000 0.00 0.00 36.69 3.18
146 147 5.776173 ACATTACCAAATTGACGGTGAAA 57.224 34.783 0.00 0.00 36.69 2.69
147 148 6.339587 ACATTACCAAATTGACGGTGAAAT 57.660 33.333 0.00 0.00 36.69 2.17
148 149 7.455641 ACATTACCAAATTGACGGTGAAATA 57.544 32.000 0.00 0.00 36.69 1.40
149 150 7.887381 ACATTACCAAATTGACGGTGAAATAA 58.113 30.769 0.00 0.00 36.69 1.40
150 151 8.361139 ACATTACCAAATTGACGGTGAAATAAA 58.639 29.630 0.00 0.00 36.69 1.40
151 152 9.197694 CATTACCAAATTGACGGTGAAATAAAA 57.802 29.630 0.00 0.00 36.69 1.52
152 153 9.936759 ATTACCAAATTGACGGTGAAATAAAAT 57.063 25.926 0.00 0.00 36.69 1.82
153 154 9.765795 TTACCAAATTGACGGTGAAATAAAATT 57.234 25.926 0.00 0.00 36.69 1.82
155 156 9.765795 ACCAAATTGACGGTGAAATAAAATTAA 57.234 25.926 0.00 0.00 33.05 1.40
195 196 7.647907 ATCAACAGTAAACAACCTACTTACG 57.352 36.000 0.00 0.00 32.06 3.18
196 197 5.984926 TCAACAGTAAACAACCTACTTACGG 59.015 40.000 0.00 0.00 32.06 4.02
197 198 5.789643 ACAGTAAACAACCTACTTACGGA 57.210 39.130 0.00 0.00 32.06 4.69
198 199 5.776744 ACAGTAAACAACCTACTTACGGAG 58.223 41.667 0.00 0.00 32.06 4.63
200 201 6.490040 ACAGTAAACAACCTACTTACGGAGTA 59.510 38.462 1.70 1.70 45.11 2.59
201 202 6.803807 CAGTAAACAACCTACTTACGGAGTAC 59.196 42.308 0.00 0.00 45.76 2.73
202 203 6.717084 AGTAAACAACCTACTTACGGAGTACT 59.283 38.462 0.00 0.00 45.76 2.73
203 204 7.883311 AGTAAACAACCTACTTACGGAGTACTA 59.117 37.037 0.00 0.00 45.76 1.82
204 205 6.502136 AACAACCTACTTACGGAGTACTAC 57.498 41.667 0.00 0.00 45.76 2.73
205 206 4.944317 ACAACCTACTTACGGAGTACTACC 59.056 45.833 0.00 0.45 45.76 3.18
206 207 5.189180 CAACCTACTTACGGAGTACTACCT 58.811 45.833 0.00 0.00 45.76 3.08
207 208 6.070194 ACAACCTACTTACGGAGTACTACCTA 60.070 42.308 0.00 0.00 45.76 3.08
208 209 5.919755 ACCTACTTACGGAGTACTACCTAC 58.080 45.833 0.00 0.00 45.76 3.18
209 210 5.663556 ACCTACTTACGGAGTACTACCTACT 59.336 44.000 0.00 0.00 45.76 2.57
210 211 6.839657 ACCTACTTACGGAGTACTACCTACTA 59.160 42.308 0.00 0.00 45.76 1.82
211 212 7.344871 ACCTACTTACGGAGTACTACCTACTAA 59.655 40.741 0.00 0.00 45.76 2.24
212 213 7.654116 CCTACTTACGGAGTACTACCTACTAAC 59.346 44.444 0.00 0.00 45.76 2.34
213 214 6.947464 ACTTACGGAGTACTACCTACTAACA 58.053 40.000 0.00 0.00 45.76 2.41
214 215 7.044798 ACTTACGGAGTACTACCTACTAACAG 58.955 42.308 0.00 0.00 45.76 3.16
215 216 5.428184 ACGGAGTACTACCTACTAACAGT 57.572 43.478 0.00 0.00 41.94 3.55
216 217 5.423886 ACGGAGTACTACCTACTAACAGTC 58.576 45.833 0.00 0.00 41.94 3.51
217 218 4.813697 CGGAGTACTACCTACTAACAGTCC 59.186 50.000 0.00 0.00 35.66 3.85
218 219 5.129634 GGAGTACTACCTACTAACAGTCCC 58.870 50.000 0.00 0.00 35.66 4.46
219 220 5.104151 GGAGTACTACCTACTAACAGTCCCT 60.104 48.000 0.00 0.00 35.66 4.20
220 221 6.100424 GGAGTACTACCTACTAACAGTCCCTA 59.900 46.154 0.00 0.00 35.66 3.53
221 222 7.366011 GGAGTACTACCTACTAACAGTCCCTAA 60.366 44.444 0.00 0.00 35.66 2.69
222 223 8.111928 AGTACTACCTACTAACAGTCCCTAAT 57.888 38.462 0.00 0.00 33.53 1.73
223 224 7.997803 AGTACTACCTACTAACAGTCCCTAATG 59.002 40.741 0.00 0.00 33.53 1.90
224 225 6.739664 ACTACCTACTAACAGTCCCTAATGT 58.260 40.000 0.00 0.00 0.00 2.71
225 226 7.187676 ACTACCTACTAACAGTCCCTAATGTT 58.812 38.462 0.00 0.00 42.15 2.71
226 227 6.541934 ACCTACTAACAGTCCCTAATGTTC 57.458 41.667 0.00 0.00 40.09 3.18
227 228 5.424573 ACCTACTAACAGTCCCTAATGTTCC 59.575 44.000 0.00 0.00 40.09 3.62
228 229 5.661759 CCTACTAACAGTCCCTAATGTTCCT 59.338 44.000 0.00 0.00 40.09 3.36
229 230 6.156429 CCTACTAACAGTCCCTAATGTTCCTT 59.844 42.308 0.00 0.00 40.09 3.36
230 231 6.051179 ACTAACAGTCCCTAATGTTCCTTC 57.949 41.667 0.00 0.00 40.09 3.46
231 232 5.785940 ACTAACAGTCCCTAATGTTCCTTCT 59.214 40.000 0.00 0.00 40.09 2.85
232 233 5.584551 AACAGTCCCTAATGTTCCTTCTT 57.415 39.130 0.00 0.00 34.62 2.52
233 234 5.584551 ACAGTCCCTAATGTTCCTTCTTT 57.415 39.130 0.00 0.00 0.00 2.52
234 235 6.697641 ACAGTCCCTAATGTTCCTTCTTTA 57.302 37.500 0.00 0.00 0.00 1.85
235 236 7.272144 ACAGTCCCTAATGTTCCTTCTTTAT 57.728 36.000 0.00 0.00 0.00 1.40
236 237 7.699878 ACAGTCCCTAATGTTCCTTCTTTATT 58.300 34.615 0.00 0.00 0.00 1.40
237 238 8.170730 ACAGTCCCTAATGTTCCTTCTTTATTT 58.829 33.333 0.00 0.00 0.00 1.40
238 239 9.025041 CAGTCCCTAATGTTCCTTCTTTATTTT 57.975 33.333 0.00 0.00 0.00 1.82
246 247 7.429636 TGTTCCTTCTTTATTTTACACTCGG 57.570 36.000 0.00 0.00 0.00 4.63
247 248 6.072893 TGTTCCTTCTTTATTTTACACTCGGC 60.073 38.462 0.00 0.00 0.00 5.54
248 249 5.553123 TCCTTCTTTATTTTACACTCGGCA 58.447 37.500 0.00 0.00 0.00 5.69
249 250 5.998981 TCCTTCTTTATTTTACACTCGGCAA 59.001 36.000 0.00 0.00 0.00 4.52
250 251 6.487331 TCCTTCTTTATTTTACACTCGGCAAA 59.513 34.615 0.00 0.00 0.00 3.68
251 252 6.581166 CCTTCTTTATTTTACACTCGGCAAAC 59.419 38.462 0.00 0.00 0.00 2.93
252 253 6.621316 TCTTTATTTTACACTCGGCAAACA 57.379 33.333 0.00 0.00 0.00 2.83
253 254 7.209471 TCTTTATTTTACACTCGGCAAACAT 57.791 32.000 0.00 0.00 0.00 2.71
254 255 7.302524 TCTTTATTTTACACTCGGCAAACATC 58.697 34.615 0.00 0.00 0.00 3.06
255 256 3.529634 TTTTACACTCGGCAAACATCG 57.470 42.857 0.00 0.00 0.00 3.84
256 257 2.157834 TTACACTCGGCAAACATCGT 57.842 45.000 0.00 0.00 0.00 3.73
257 258 3.300852 TTACACTCGGCAAACATCGTA 57.699 42.857 0.00 0.00 0.00 3.43
258 259 1.710013 ACACTCGGCAAACATCGTAG 58.290 50.000 0.00 0.00 0.00 3.51
259 260 0.370273 CACTCGGCAAACATCGTAGC 59.630 55.000 0.00 0.00 0.00 3.58
260 261 0.037697 ACTCGGCAAACATCGTAGCA 60.038 50.000 0.00 0.00 0.00 3.49
261 262 0.370273 CTCGGCAAACATCGTAGCAC 59.630 55.000 0.00 0.00 0.00 4.40
262 263 1.017177 TCGGCAAACATCGTAGCACC 61.017 55.000 0.00 0.00 0.00 5.01
263 264 1.423845 GGCAAACATCGTAGCACCG 59.576 57.895 0.00 0.00 0.00 4.94
264 265 1.296056 GGCAAACATCGTAGCACCGT 61.296 55.000 0.00 0.00 0.00 4.83
265 266 0.179225 GCAAACATCGTAGCACCGTG 60.179 55.000 0.00 0.00 0.00 4.94
266 267 1.424403 CAAACATCGTAGCACCGTGA 58.576 50.000 1.65 0.00 0.00 4.35
267 268 1.126113 CAAACATCGTAGCACCGTGAC 59.874 52.381 1.65 0.00 0.00 3.67
268 269 0.601558 AACATCGTAGCACCGTGACT 59.398 50.000 1.65 1.79 0.00 3.41
269 270 0.601558 ACATCGTAGCACCGTGACTT 59.398 50.000 1.65 0.00 0.00 3.01
270 271 1.000506 ACATCGTAGCACCGTGACTTT 59.999 47.619 1.65 0.00 0.00 2.66
271 272 2.066262 CATCGTAGCACCGTGACTTTT 58.934 47.619 1.65 0.00 0.00 2.27
272 273 1.774639 TCGTAGCACCGTGACTTTTC 58.225 50.000 1.65 0.00 0.00 2.29
273 274 1.338973 TCGTAGCACCGTGACTTTTCT 59.661 47.619 1.65 0.00 0.00 2.52
274 275 2.132762 CGTAGCACCGTGACTTTTCTT 58.867 47.619 1.65 0.00 0.00 2.52
275 276 2.155155 CGTAGCACCGTGACTTTTCTTC 59.845 50.000 1.65 0.00 0.00 2.87
276 277 2.325583 AGCACCGTGACTTTTCTTCA 57.674 45.000 1.65 0.00 0.00 3.02
277 278 1.940613 AGCACCGTGACTTTTCTTCAC 59.059 47.619 1.65 0.00 40.10 3.18
278 279 1.668751 GCACCGTGACTTTTCTTCACA 59.331 47.619 1.65 0.00 43.09 3.58
279 280 2.096819 GCACCGTGACTTTTCTTCACAA 59.903 45.455 1.65 0.00 43.09 3.33
280 281 3.243068 GCACCGTGACTTTTCTTCACAAT 60.243 43.478 1.65 0.00 43.09 2.71
281 282 4.282068 CACCGTGACTTTTCTTCACAATG 58.718 43.478 0.00 0.00 43.09 2.82
282 283 3.945285 ACCGTGACTTTTCTTCACAATGT 59.055 39.130 3.58 0.00 43.09 2.71
283 284 4.398044 ACCGTGACTTTTCTTCACAATGTT 59.602 37.500 3.58 0.00 43.09 2.71
284 285 5.587043 ACCGTGACTTTTCTTCACAATGTTA 59.413 36.000 3.58 0.00 43.09 2.41
285 286 6.136071 CCGTGACTTTTCTTCACAATGTTAG 58.864 40.000 3.58 0.00 43.09 2.34
286 287 6.018262 CCGTGACTTTTCTTCACAATGTTAGA 60.018 38.462 3.58 0.00 43.09 2.10
287 288 7.065894 CGTGACTTTTCTTCACAATGTTAGAG 58.934 38.462 3.58 0.00 43.09 2.43
288 289 7.355778 GTGACTTTTCTTCACAATGTTAGAGG 58.644 38.462 0.00 0.00 42.58 3.69
289 290 7.226720 GTGACTTTTCTTCACAATGTTAGAGGA 59.773 37.037 0.00 0.00 42.58 3.71
290 291 7.939039 TGACTTTTCTTCACAATGTTAGAGGAT 59.061 33.333 0.00 0.00 0.00 3.24
291 292 8.329203 ACTTTTCTTCACAATGTTAGAGGATC 57.671 34.615 0.00 0.00 0.00 3.36
292 293 7.391833 ACTTTTCTTCACAATGTTAGAGGATCC 59.608 37.037 2.48 2.48 33.66 3.36
293 294 5.011090 TCTTCACAATGTTAGAGGATCCG 57.989 43.478 5.98 0.00 33.66 4.18
294 295 3.819564 TCACAATGTTAGAGGATCCGG 57.180 47.619 5.98 0.00 33.66 5.14
295 296 3.104512 TCACAATGTTAGAGGATCCGGT 58.895 45.455 5.98 0.00 33.66 5.28
296 297 3.517901 TCACAATGTTAGAGGATCCGGTT 59.482 43.478 5.98 0.00 33.66 4.44
297 298 4.019681 TCACAATGTTAGAGGATCCGGTTT 60.020 41.667 5.98 0.00 33.66 3.27
298 299 4.332819 CACAATGTTAGAGGATCCGGTTTC 59.667 45.833 5.98 0.00 33.66 2.78
299 300 2.953466 TGTTAGAGGATCCGGTTTCG 57.047 50.000 5.98 0.00 33.66 3.46
311 312 4.796495 GTTTCGGATGGCGGGCCT 62.796 66.667 11.55 0.00 36.94 5.19
312 313 4.041762 TTTCGGATGGCGGGCCTT 62.042 61.111 11.55 4.32 36.94 4.35
313 314 3.577334 TTTCGGATGGCGGGCCTTT 62.577 57.895 11.55 0.00 36.94 3.11
314 315 3.577334 TTCGGATGGCGGGCCTTTT 62.577 57.895 11.55 0.00 36.94 2.27
315 316 3.825611 CGGATGGCGGGCCTTTTG 61.826 66.667 11.55 0.00 36.94 2.44
316 317 2.679996 GGATGGCGGGCCTTTTGT 60.680 61.111 11.55 0.00 36.94 2.83
317 318 2.282783 GGATGGCGGGCCTTTTGTT 61.283 57.895 11.55 0.00 36.94 2.83
318 319 1.215382 GATGGCGGGCCTTTTGTTC 59.785 57.895 11.55 0.00 36.94 3.18
319 320 1.531739 GATGGCGGGCCTTTTGTTCA 61.532 55.000 11.55 0.00 36.94 3.18
320 321 0.904394 ATGGCGGGCCTTTTGTTCAT 60.904 50.000 11.55 0.00 36.94 2.57
321 322 1.079888 GGCGGGCCTTTTGTTCATG 60.080 57.895 0.84 0.00 0.00 3.07
322 323 1.531739 GGCGGGCCTTTTGTTCATGA 61.532 55.000 0.84 0.00 0.00 3.07
323 324 0.316841 GCGGGCCTTTTGTTCATGAA 59.683 50.000 3.38 3.38 0.00 2.57
324 325 1.934849 GCGGGCCTTTTGTTCATGAAC 60.935 52.381 28.10 28.10 41.50 3.18
325 326 1.665735 CGGGCCTTTTGTTCATGAACG 60.666 52.381 28.55 17.32 43.94 3.95
326 327 1.611491 GGGCCTTTTGTTCATGAACGA 59.389 47.619 28.55 25.55 43.94 3.85
327 328 2.351738 GGGCCTTTTGTTCATGAACGAG 60.352 50.000 28.55 24.15 43.94 4.18
328 329 2.319472 GCCTTTTGTTCATGAACGAGC 58.681 47.619 28.55 22.82 43.94 5.03
329 330 2.030805 GCCTTTTGTTCATGAACGAGCT 60.031 45.455 28.55 0.00 43.94 4.09
330 331 3.188460 GCCTTTTGTTCATGAACGAGCTA 59.812 43.478 28.55 16.74 43.94 3.32
331 332 4.142600 GCCTTTTGTTCATGAACGAGCTAT 60.143 41.667 28.55 0.00 43.94 2.97
332 333 5.327091 CCTTTTGTTCATGAACGAGCTATG 58.673 41.667 28.55 15.95 43.94 2.23
333 334 4.944962 TTTGTTCATGAACGAGCTATGG 57.055 40.909 28.55 0.00 43.94 2.74
334 335 2.279741 TGTTCATGAACGAGCTATGGC 58.720 47.619 28.55 6.30 43.94 4.40
335 336 1.258982 GTTCATGAACGAGCTATGGCG 59.741 52.381 22.09 0.00 44.37 5.69
336 337 0.249447 TCATGAACGAGCTATGGCGG 60.249 55.000 0.00 0.00 44.37 6.13
337 338 1.595382 ATGAACGAGCTATGGCGGC 60.595 57.895 0.00 0.00 44.37 6.53
338 339 3.330853 GAACGAGCTATGGCGGCG 61.331 66.667 15.41 15.41 44.37 6.46
353 354 4.854784 GCGCGCTCCTGACATCGA 62.855 66.667 26.67 0.00 0.00 3.59
354 355 2.202610 CGCGCTCCTGACATCGAA 60.203 61.111 5.56 0.00 0.00 3.71
355 356 2.226896 CGCGCTCCTGACATCGAAG 61.227 63.158 5.56 0.00 0.00 3.79
356 357 1.139734 GCGCTCCTGACATCGAAGA 59.860 57.895 0.00 0.00 45.75 2.87
357 358 1.142778 GCGCTCCTGACATCGAAGAC 61.143 60.000 0.00 0.00 42.51 3.01
358 359 0.863538 CGCTCCTGACATCGAAGACG 60.864 60.000 0.00 0.00 42.51 4.18
359 360 0.171455 GCTCCTGACATCGAAGACGT 59.829 55.000 0.00 0.00 42.51 4.34
360 361 1.901538 CTCCTGACATCGAAGACGTG 58.098 55.000 0.00 0.00 42.51 4.49
361 362 1.468914 CTCCTGACATCGAAGACGTGA 59.531 52.381 0.00 0.00 42.51 4.35
362 363 1.468914 TCCTGACATCGAAGACGTGAG 59.531 52.381 0.00 0.00 42.51 3.51
363 364 1.468914 CCTGACATCGAAGACGTGAGA 59.531 52.381 0.00 0.00 42.51 3.27
364 365 2.477021 CCTGACATCGAAGACGTGAGAG 60.477 54.545 0.00 0.00 42.51 3.20
365 366 1.468914 TGACATCGAAGACGTGAGAGG 59.531 52.381 0.00 0.00 42.51 3.69
366 367 0.171455 ACATCGAAGACGTGAGAGGC 59.829 55.000 0.00 0.00 42.51 4.70
367 368 0.171231 CATCGAAGACGTGAGAGGCA 59.829 55.000 0.00 0.00 42.51 4.75
368 369 0.171455 ATCGAAGACGTGAGAGGCAC 59.829 55.000 0.00 0.00 42.51 5.01
375 376 2.105128 GTGAGAGGCACGGATCGG 59.895 66.667 0.00 0.00 37.83 4.18
376 377 2.044352 TGAGAGGCACGGATCGGA 60.044 61.111 7.35 0.00 0.00 4.55
377 378 2.413765 GAGAGGCACGGATCGGAC 59.586 66.667 7.35 0.00 0.00 4.79
378 379 3.471244 GAGAGGCACGGATCGGACG 62.471 68.421 7.35 0.00 37.36 4.79
379 380 4.570663 GAGGCACGGATCGGACGG 62.571 72.222 7.35 0.00 35.23 4.79
381 382 4.446413 GGCACGGATCGGACGGTT 62.446 66.667 7.35 0.00 35.23 4.44
382 383 2.491152 GCACGGATCGGACGGTTA 59.509 61.111 7.35 0.00 35.23 2.85
383 384 1.875364 GCACGGATCGGACGGTTAC 60.875 63.158 7.35 0.00 35.23 2.50
384 385 1.805254 CACGGATCGGACGGTTACT 59.195 57.895 7.35 0.00 35.23 2.24
385 386 1.016627 CACGGATCGGACGGTTACTA 58.983 55.000 7.35 0.00 35.23 1.82
386 387 1.605710 CACGGATCGGACGGTTACTAT 59.394 52.381 7.35 0.00 35.23 2.12
387 388 1.605710 ACGGATCGGACGGTTACTATG 59.394 52.381 7.35 0.00 35.23 2.23
388 389 1.605710 CGGATCGGACGGTTACTATGT 59.394 52.381 0.00 0.00 0.00 2.29
389 390 2.603892 CGGATCGGACGGTTACTATGTG 60.604 54.545 0.00 0.00 0.00 3.21
390 391 2.391879 GATCGGACGGTTACTATGTGC 58.608 52.381 0.00 0.00 0.00 4.57
391 392 1.466856 TCGGACGGTTACTATGTGCT 58.533 50.000 0.00 0.00 0.00 4.40
392 393 1.133598 TCGGACGGTTACTATGTGCTG 59.866 52.381 0.00 0.00 0.00 4.41
393 394 1.135199 CGGACGGTTACTATGTGCTGT 60.135 52.381 0.00 0.00 0.00 4.40
394 395 2.097954 CGGACGGTTACTATGTGCTGTA 59.902 50.000 0.00 0.00 0.00 2.74
395 396 3.243301 CGGACGGTTACTATGTGCTGTAT 60.243 47.826 0.00 0.00 0.00 2.29
396 397 4.296690 GGACGGTTACTATGTGCTGTATC 58.703 47.826 0.00 0.00 0.00 2.24
397 398 4.202080 GGACGGTTACTATGTGCTGTATCA 60.202 45.833 0.00 0.00 0.00 2.15
398 399 4.679662 ACGGTTACTATGTGCTGTATCAC 58.320 43.478 0.00 0.00 37.48 3.06
407 408 3.388134 CTGTATCACACGGCTGCG 58.612 61.111 0.00 0.00 0.00 5.18
408 409 2.802667 CTGTATCACACGGCTGCGC 61.803 63.158 0.00 0.00 0.00 6.09
409 410 3.913573 GTATCACACGGCTGCGCG 61.914 66.667 0.00 0.00 0.00 6.86
418 419 4.776647 GGCTGCGCGGCGAAATTT 62.777 61.111 33.18 0.00 0.00 1.82
419 420 3.535491 GCTGCGCGGCGAAATTTG 61.535 61.111 27.72 4.53 0.00 2.32
420 421 2.875711 CTGCGCGGCGAAATTTGG 60.876 61.111 28.54 0.00 0.00 3.28
421 422 4.412270 TGCGCGGCGAAATTTGGG 62.412 61.111 28.54 0.00 0.00 4.12
423 424 4.114997 CGCGGCGAAATTTGGGCT 62.115 61.111 19.16 0.00 0.00 5.19
424 425 2.506881 GCGGCGAAATTTGGGCTG 60.507 61.111 21.35 17.00 36.16 4.85
425 426 2.181525 CGGCGAAATTTGGGCTGG 59.818 61.111 21.35 6.28 0.00 4.85
426 427 2.635443 CGGCGAAATTTGGGCTGGT 61.635 57.895 21.35 0.00 0.00 4.00
427 428 1.215382 GGCGAAATTTGGGCTGGTC 59.785 57.895 17.73 0.00 0.00 4.02
428 429 1.154035 GCGAAATTTGGGCTGGTCG 60.154 57.895 0.00 0.00 0.00 4.79
429 430 1.582610 GCGAAATTTGGGCTGGTCGA 61.583 55.000 0.00 0.00 0.00 4.20
430 431 0.168128 CGAAATTTGGGCTGGTCGAC 59.832 55.000 7.13 7.13 0.00 4.20
431 432 1.534729 GAAATTTGGGCTGGTCGACT 58.465 50.000 16.46 0.00 0.00 4.18
432 433 1.200020 GAAATTTGGGCTGGTCGACTG 59.800 52.381 16.46 9.94 0.00 3.51
433 434 0.609131 AATTTGGGCTGGTCGACTGG 60.609 55.000 16.46 9.54 0.00 4.00
434 435 3.842925 TTTGGGCTGGTCGACTGGC 62.843 63.158 16.46 19.09 41.91 4.85
452 453 4.062656 GGCGCGGCCCAAAATGAA 62.063 61.111 23.89 0.00 44.06 2.57
453 454 2.048690 GCGCGGCCCAAAATGAAA 60.049 55.556 8.83 0.00 0.00 2.69
454 455 2.379634 GCGCGGCCCAAAATGAAAC 61.380 57.895 8.83 0.00 0.00 2.78
455 456 1.736282 CGCGGCCCAAAATGAAACC 60.736 57.895 0.00 0.00 0.00 3.27
456 457 1.369321 GCGGCCCAAAATGAAACCA 59.631 52.632 0.00 0.00 0.00 3.67
457 458 0.948623 GCGGCCCAAAATGAAACCAC 60.949 55.000 0.00 0.00 0.00 4.16
458 459 0.665972 CGGCCCAAAATGAAACCACG 60.666 55.000 0.00 0.00 0.00 4.94
459 460 0.948623 GGCCCAAAATGAAACCACGC 60.949 55.000 0.00 0.00 0.00 5.34
460 461 0.249657 GCCCAAAATGAAACCACGCA 60.250 50.000 0.00 0.00 0.00 5.24
461 462 1.607767 GCCCAAAATGAAACCACGCAT 60.608 47.619 0.00 0.00 0.00 4.73
462 463 2.336667 CCCAAAATGAAACCACGCATC 58.663 47.619 0.00 0.00 0.00 3.91
463 464 1.984990 CCAAAATGAAACCACGCATCG 59.015 47.619 0.00 0.00 0.00 3.84
464 465 2.606795 CCAAAATGAAACCACGCATCGT 60.607 45.455 0.00 0.00 42.36 3.73
476 477 3.187478 ACGCATCGTGATCAAAACAAG 57.813 42.857 0.00 0.00 39.18 3.16
477 478 2.095768 ACGCATCGTGATCAAAACAAGG 60.096 45.455 0.00 0.00 39.18 3.61
478 479 2.728846 CGCATCGTGATCAAAACAAGGG 60.729 50.000 0.00 0.00 0.00 3.95
479 480 2.487762 GCATCGTGATCAAAACAAGGGA 59.512 45.455 0.00 0.00 0.00 4.20
480 481 3.426695 GCATCGTGATCAAAACAAGGGAG 60.427 47.826 0.00 0.00 0.00 4.30
481 482 2.151202 TCGTGATCAAAACAAGGGAGC 58.849 47.619 0.00 0.00 0.00 4.70
482 483 1.135972 CGTGATCAAAACAAGGGAGCG 60.136 52.381 0.00 0.00 0.00 5.03
483 484 2.151202 GTGATCAAAACAAGGGAGCGA 58.849 47.619 0.00 0.00 0.00 4.93
484 485 2.160417 GTGATCAAAACAAGGGAGCGAG 59.840 50.000 0.00 0.00 0.00 5.03
485 486 1.131315 GATCAAAACAAGGGAGCGAGC 59.869 52.381 0.00 0.00 0.00 5.03
486 487 1.207593 CAAAACAAGGGAGCGAGCG 59.792 57.895 0.00 0.00 0.00 5.03
504 505 0.179045 CGAAATGCGGAGGGGATCTT 60.179 55.000 0.00 0.00 36.03 2.40
509 510 3.130227 CGGAGGGGATCTTCCGTC 58.870 66.667 19.10 11.93 40.49 4.79
542 551 1.298157 CCGTGAGAAGCGCAATTCCA 61.298 55.000 11.47 3.44 0.00 3.53
543 552 0.516877 CGTGAGAAGCGCAATTCCAA 59.483 50.000 11.47 0.00 0.00 3.53
552 561 1.212751 GCAATTCCAACCTCGCCAC 59.787 57.895 0.00 0.00 0.00 5.01
612 621 1.025812 CACGCTCCTTCTCGGTCTAT 58.974 55.000 0.00 0.00 0.00 1.98
626 635 2.041966 GGTCTATTACATGTCGTCGCG 58.958 52.381 0.00 0.00 0.00 5.87
650 659 1.604278 GTTGACGGCTGCTCTTTCTTT 59.396 47.619 0.00 0.00 0.00 2.52
651 660 1.512926 TGACGGCTGCTCTTTCTTTC 58.487 50.000 0.00 0.00 0.00 2.62
652 661 1.070758 TGACGGCTGCTCTTTCTTTCT 59.929 47.619 0.00 0.00 0.00 2.52
653 662 2.147150 GACGGCTGCTCTTTCTTTCTT 58.853 47.619 0.00 0.00 0.00 2.52
654 663 2.550180 GACGGCTGCTCTTTCTTTCTTT 59.450 45.455 0.00 0.00 0.00 2.52
655 664 2.952310 ACGGCTGCTCTTTCTTTCTTTT 59.048 40.909 0.00 0.00 0.00 2.27
656 665 3.381590 ACGGCTGCTCTTTCTTTCTTTTT 59.618 39.130 0.00 0.00 0.00 1.94
784 798 3.931247 ACGTACCGCCCACTGCAA 61.931 61.111 0.00 0.00 41.33 4.08
810 824 7.734538 TTCTTTCTTTTCTGCAAACGTTTAG 57.265 32.000 14.20 8.85 0.00 1.85
818 832 7.639162 TTTCTGCAAACGTTTAGAAAACAAA 57.361 28.000 25.76 11.46 36.52 2.83
820 834 5.802956 TCTGCAAACGTTTAGAAAACAAAGG 59.197 36.000 14.20 0.00 0.00 3.11
821 835 5.471257 TGCAAACGTTTAGAAAACAAAGGT 58.529 33.333 14.20 0.00 35.99 3.50
822 836 6.618811 TGCAAACGTTTAGAAAACAAAGGTA 58.381 32.000 14.20 0.00 34.02 3.08
823 837 6.527372 TGCAAACGTTTAGAAAACAAAGGTAC 59.473 34.615 14.20 0.00 34.02 3.34
826 840 6.990341 ACGTTTAGAAAACAAAGGTACACT 57.010 33.333 0.00 0.00 33.53 3.55
827 841 8.491331 AACGTTTAGAAAACAAAGGTACACTA 57.509 30.769 0.00 0.00 34.02 2.74
828 842 8.491331 ACGTTTAGAAAACAAAGGTACACTAA 57.509 30.769 0.00 0.00 33.53 2.24
989 1025 3.670377 GCCAGCCAACGGACCAAC 61.670 66.667 0.00 0.00 0.00 3.77
990 1026 2.983592 CCAGCCAACGGACCAACC 60.984 66.667 0.00 0.00 0.00 3.77
1414 1478 1.730547 CCGTACGTGACCGACCAAC 60.731 63.158 15.21 0.00 37.88 3.77
1415 1479 1.730547 CGTACGTGACCGACCAACC 60.731 63.158 7.22 0.00 37.88 3.77
1416 1480 1.363443 GTACGTGACCGACCAACCA 59.637 57.895 0.00 0.00 37.88 3.67
1417 1481 0.249405 GTACGTGACCGACCAACCAA 60.249 55.000 0.00 0.00 37.88 3.67
1418 1482 0.032403 TACGTGACCGACCAACCAAG 59.968 55.000 0.00 0.00 37.88 3.61
1419 1483 1.068417 CGTGACCGACCAACCAAGA 59.932 57.895 0.00 0.00 35.63 3.02
1420 1484 0.531090 CGTGACCGACCAACCAAGAA 60.531 55.000 0.00 0.00 35.63 2.52
1421 1485 0.942252 GTGACCGACCAACCAAGAAC 59.058 55.000 0.00 0.00 0.00 3.01
1593 1657 4.394712 CAGGTCCGTCAGCCACCC 62.395 72.222 0.00 0.00 0.00 4.61
1594 1658 4.954118 AGGTCCGTCAGCCACCCA 62.954 66.667 0.00 0.00 0.00 4.51
1595 1659 4.699522 GGTCCGTCAGCCACCCAC 62.700 72.222 0.00 0.00 0.00 4.61
1600 1664 2.110213 GTCAGCCACCCACACGAA 59.890 61.111 0.00 0.00 0.00 3.85
1601 1665 2.110213 TCAGCCACCCACACGAAC 59.890 61.111 0.00 0.00 0.00 3.95
1603 1667 2.203153 AGCCACCCACACGAACAC 60.203 61.111 0.00 0.00 0.00 3.32
1604 1668 2.515057 GCCACCCACACGAACACA 60.515 61.111 0.00 0.00 0.00 3.72
1605 1669 2.115911 GCCACCCACACGAACACAA 61.116 57.895 0.00 0.00 0.00 3.33
1606 1670 1.658686 GCCACCCACACGAACACAAA 61.659 55.000 0.00 0.00 0.00 2.83
1607 1671 0.811915 CCACCCACACGAACACAAAA 59.188 50.000 0.00 0.00 0.00 2.44
1608 1672 1.202582 CCACCCACACGAACACAAAAA 59.797 47.619 0.00 0.00 0.00 1.94
1609 1673 2.525055 CACCCACACGAACACAAAAAG 58.475 47.619 0.00 0.00 0.00 2.27
1610 1674 1.474879 ACCCACACGAACACAAAAAGG 59.525 47.619 0.00 0.00 0.00 3.11
1611 1675 1.202359 CCCACACGAACACAAAAAGGG 60.202 52.381 0.00 0.00 0.00 3.95
1612 1676 1.555477 CACACGAACACAAAAAGGGC 58.445 50.000 0.00 0.00 0.00 5.19
1613 1677 1.134175 CACACGAACACAAAAAGGGCT 59.866 47.619 0.00 0.00 0.00 5.19
1616 1680 1.676006 ACGAACACAAAAAGGGCTCTG 59.324 47.619 0.00 0.00 0.00 3.35
1619 1683 2.435372 ACACAAAAAGGGCTCTGTGA 57.565 45.000 10.42 0.00 41.35 3.58
1624 1688 4.508861 CACAAAAAGGGCTCTGTGATTTTG 59.491 41.667 16.26 16.26 41.35 2.44
1639 1703 5.068855 TGTGATTTTGTCTGAATTTGCTCCA 59.931 36.000 0.00 0.00 0.00 3.86
1899 1963 2.033602 TCGCTGACCGAGGTCTCA 59.966 61.111 21.35 3.89 44.80 3.27
1916 1980 2.632996 TCTCATTCAACTGGTTCGTCCT 59.367 45.455 1.80 0.00 37.07 3.85
1982 2046 4.640647 GGCCCGATGATTATATTCCCTTTC 59.359 45.833 0.00 0.00 0.00 2.62
2037 2101 2.372690 CCGTCGCTTTCTCACGGTG 61.373 63.158 0.56 0.56 46.58 4.94
2127 2193 1.612462 CCAGGAATGTGCTCAGCAAGA 60.612 52.381 0.00 0.00 41.47 3.02
2193 2259 5.680619 TCAGTTCACCAGTAACAATTCAGT 58.319 37.500 0.00 0.00 0.00 3.41
2209 2280 9.553064 AACAATTCAGTAGTATCTCATGATTCC 57.447 33.333 0.00 0.00 34.32 3.01
2235 2306 6.457355 TCCAAATTCCAAACACTGATGAATG 58.543 36.000 0.00 0.00 0.00 2.67
2320 2391 1.067821 GTGCTGTCCTTCCTCCTATCG 59.932 57.143 0.00 0.00 0.00 2.92
2380 2451 2.811317 GCGTTCCTCCAGAGCACG 60.811 66.667 11.33 11.33 36.95 5.34
2387 2458 1.668294 CTCCAGAGCACGGTGAGTT 59.332 57.895 13.29 0.00 0.00 3.01
2390 2461 1.899814 TCCAGAGCACGGTGAGTTAAT 59.100 47.619 13.29 0.00 0.00 1.40
2393 2464 2.926200 CAGAGCACGGTGAGTTAATCTG 59.074 50.000 13.29 10.12 31.79 2.90
2401 2472 5.346281 CACGGTGAGTTAATCTGAAAGTCTC 59.654 44.000 0.74 0.00 33.76 3.36
2408 2479 9.354673 TGAGTTAATCTGAAAGTCTCCAAAATT 57.645 29.630 0.00 0.00 33.76 1.82
2572 2666 2.303022 AGGGACGAGACACATGACAAAT 59.697 45.455 0.00 0.00 0.00 2.32
2592 2686 1.230635 CCTCACACGGTTCTGGCTTG 61.231 60.000 0.00 0.00 0.00 4.01
2781 2875 3.447025 CTTCCGGACGCCCATCTCC 62.447 68.421 1.83 0.00 0.00 3.71
2802 2896 2.086869 CCTGTCAATGCACTGGGTAAG 58.913 52.381 0.00 0.00 32.91 2.34
2807 2901 3.189287 GTCAATGCACTGGGTAAGAACAG 59.811 47.826 0.00 0.00 40.48 3.16
2809 2903 2.543777 TGCACTGGGTAAGAACAGAC 57.456 50.000 0.00 0.00 38.09 3.51
2810 2904 1.071699 TGCACTGGGTAAGAACAGACC 59.928 52.381 0.00 0.00 38.09 3.85
2821 2928 4.895224 AAGAACAGACCCTTCGTTTTTC 57.105 40.909 0.00 0.00 0.00 2.29
2832 2939 1.779569 TCGTTTTTCCTCGAGCAGTC 58.220 50.000 6.99 0.00 0.00 3.51
2852 2959 4.926238 AGTCTCTTTTCTACTGCAATGTCG 59.074 41.667 0.00 0.00 0.00 4.35
3035 3144 7.444792 GGATTAGGTCGATATAGTATCCACGAT 59.555 40.741 0.00 0.00 32.48 3.73
3118 3227 1.090728 GCCTACAGCAGCTTCTTTCC 58.909 55.000 0.00 0.00 42.97 3.13
3193 3302 8.044060 TGAATAATCACAAATCTCCTGACAAC 57.956 34.615 0.00 0.00 0.00 3.32
3200 3541 4.022589 ACAAATCTCCTGACAACATGCAAG 60.023 41.667 0.00 0.00 0.00 4.01
3207 3548 2.747989 CTGACAACATGCAAGATGCTCT 59.252 45.455 0.00 0.00 45.31 4.09
3222 3563 2.572290 TGCTCTGATGCCATGAGAATG 58.428 47.619 0.00 0.00 0.00 2.67
3229 3572 0.622136 TGCCATGAGAATGCCACTCT 59.378 50.000 0.00 0.00 35.66 3.24
3259 3602 6.987404 GGTGCAAAACCCACTTAAAAAGATAA 59.013 34.615 0.00 0.00 44.02 1.75
3260 3603 7.042321 GGTGCAAAACCCACTTAAAAAGATAAC 60.042 37.037 0.00 0.00 44.02 1.89
3261 3604 6.987404 TGCAAAACCCACTTAAAAAGATAACC 59.013 34.615 0.00 0.00 0.00 2.85
3270 3613 9.899226 CCACTTAAAAAGATAACCTTTGAGAAG 57.101 33.333 0.00 0.00 43.90 2.85
3353 3696 2.029649 ACATTGCTTGACCATCTGTTGC 60.030 45.455 0.00 0.00 0.00 4.17
3394 3738 3.303351 AGATCCCATAGGCAACCAAAG 57.697 47.619 0.00 0.00 37.17 2.77
3426 3770 4.805609 GCCAACCAAATGGAAGCCAAAATA 60.806 41.667 6.42 0.00 43.54 1.40
3540 3900 3.940852 CCAAATTAAGGGCTGCCAAAATC 59.059 43.478 22.05 1.96 0.00 2.17
3596 3957 3.258123 GCCCCTTATGCTTTGAGAAAACA 59.742 43.478 0.00 0.00 0.00 2.83
3854 4217 0.663568 CGTATAAAGCGCCTCCGAGG 60.664 60.000 10.41 10.41 38.80 4.63
3940 4303 3.182173 CACGCTTTGCTTAAACCAACATG 59.818 43.478 0.00 0.00 0.00 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.268605 ACTTTCCTTCTTAATGTTAGAGGATCC 58.731 37.037 2.48 2.48 33.66 3.36
2 3 9.674068 AACTTTCCTTCTTAATGTTAGAGGATC 57.326 33.333 0.00 0.00 0.00 3.36
11 12 8.379331 AGCTTCTCTAACTTTCCTTCTTAATGT 58.621 33.333 0.00 0.00 0.00 2.71
14 15 8.867097 TGTAGCTTCTCTAACTTTCCTTCTTAA 58.133 33.333 0.00 0.00 0.00 1.85
15 16 8.418597 TGTAGCTTCTCTAACTTTCCTTCTTA 57.581 34.615 0.00 0.00 0.00 2.10
16 17 7.304497 TGTAGCTTCTCTAACTTTCCTTCTT 57.696 36.000 0.00 0.00 0.00 2.52
17 18 6.919775 TGTAGCTTCTCTAACTTTCCTTCT 57.080 37.500 0.00 0.00 0.00 2.85
18 19 9.089601 GTATTGTAGCTTCTCTAACTTTCCTTC 57.910 37.037 0.00 0.00 0.00 3.46
19 20 8.041919 GGTATTGTAGCTTCTCTAACTTTCCTT 58.958 37.037 0.00 0.00 0.00 3.36
20 21 7.557724 GGTATTGTAGCTTCTCTAACTTTCCT 58.442 38.462 0.00 0.00 0.00 3.36
21 22 6.476053 CGGTATTGTAGCTTCTCTAACTTTCC 59.524 42.308 0.00 0.00 0.00 3.13
22 23 7.034397 ACGGTATTGTAGCTTCTCTAACTTTC 58.966 38.462 0.00 0.00 0.00 2.62
23 24 6.932947 ACGGTATTGTAGCTTCTCTAACTTT 58.067 36.000 0.00 0.00 0.00 2.66
24 25 6.527057 ACGGTATTGTAGCTTCTCTAACTT 57.473 37.500 0.00 0.00 0.00 2.66
25 26 7.338957 AGTTACGGTATTGTAGCTTCTCTAACT 59.661 37.037 0.00 0.00 32.78 2.24
26 27 7.479150 AGTTACGGTATTGTAGCTTCTCTAAC 58.521 38.462 0.00 0.00 32.78 2.34
27 28 7.636150 AGTTACGGTATTGTAGCTTCTCTAA 57.364 36.000 0.00 0.00 32.78 2.10
28 29 7.636150 AAGTTACGGTATTGTAGCTTCTCTA 57.364 36.000 0.00 0.00 40.46 2.43
29 30 6.527057 AAGTTACGGTATTGTAGCTTCTCT 57.473 37.500 0.00 0.00 40.46 3.10
30 31 6.255237 GGAAAGTTACGGTATTGTAGCTTCTC 59.745 42.308 0.00 4.72 42.63 2.87
31 32 6.070938 AGGAAAGTTACGGTATTGTAGCTTCT 60.071 38.462 0.00 0.00 42.63 2.85
32 33 6.104665 AGGAAAGTTACGGTATTGTAGCTTC 58.895 40.000 0.00 0.00 42.63 3.86
33 34 6.046290 AGGAAAGTTACGGTATTGTAGCTT 57.954 37.500 0.00 0.00 44.48 3.74
34 35 5.672421 AGGAAAGTTACGGTATTGTAGCT 57.328 39.130 0.00 0.00 37.47 3.32
35 36 6.104665 AGAAGGAAAGTTACGGTATTGTAGC 58.895 40.000 0.00 0.00 0.00 3.58
36 37 8.543862 AAAGAAGGAAAGTTACGGTATTGTAG 57.456 34.615 0.00 0.00 0.00 2.74
37 38 8.370182 AGAAAGAAGGAAAGTTACGGTATTGTA 58.630 33.333 0.00 0.00 0.00 2.41
38 39 7.222161 AGAAAGAAGGAAAGTTACGGTATTGT 58.778 34.615 0.00 0.00 0.00 2.71
39 40 7.668525 AGAAAGAAGGAAAGTTACGGTATTG 57.331 36.000 0.00 0.00 0.00 1.90
40 41 9.597170 GATAGAAAGAAGGAAAGTTACGGTATT 57.403 33.333 0.00 0.00 0.00 1.89
41 42 8.202811 GGATAGAAAGAAGGAAAGTTACGGTAT 58.797 37.037 0.00 0.00 0.00 2.73
42 43 7.178983 TGGATAGAAAGAAGGAAAGTTACGGTA 59.821 37.037 0.00 0.00 0.00 4.02
43 44 6.013984 TGGATAGAAAGAAGGAAAGTTACGGT 60.014 38.462 0.00 0.00 0.00 4.83
44 45 6.403878 TGGATAGAAAGAAGGAAAGTTACGG 58.596 40.000 0.00 0.00 0.00 4.02
45 46 9.765795 ATATGGATAGAAAGAAGGAAAGTTACG 57.234 33.333 0.00 0.00 0.00 3.18
114 115 8.661257 CGTCAATTTGGTAATGTACACAATAGA 58.339 33.333 0.00 0.00 0.00 1.98
115 116 7.908082 CCGTCAATTTGGTAATGTACACAATAG 59.092 37.037 0.00 0.00 0.00 1.73
116 117 7.390996 ACCGTCAATTTGGTAATGTACACAATA 59.609 33.333 0.00 0.00 36.50 1.90
117 118 6.207810 ACCGTCAATTTGGTAATGTACACAAT 59.792 34.615 0.00 0.00 36.50 2.71
118 119 5.531659 ACCGTCAATTTGGTAATGTACACAA 59.468 36.000 0.00 0.00 36.50 3.33
119 120 5.049336 CACCGTCAATTTGGTAATGTACACA 60.049 40.000 0.00 0.00 36.50 3.72
120 121 5.179742 TCACCGTCAATTTGGTAATGTACAC 59.820 40.000 0.00 0.00 36.50 2.90
121 122 5.306394 TCACCGTCAATTTGGTAATGTACA 58.694 37.500 0.00 0.00 36.50 2.90
122 123 5.866335 TCACCGTCAATTTGGTAATGTAC 57.134 39.130 0.00 0.00 36.50 2.90
123 124 6.879276 TTTCACCGTCAATTTGGTAATGTA 57.121 33.333 0.00 0.00 36.50 2.29
124 125 5.776173 TTTCACCGTCAATTTGGTAATGT 57.224 34.783 0.00 0.00 36.50 2.71
125 126 8.749841 TTTATTTCACCGTCAATTTGGTAATG 57.250 30.769 0.00 0.00 36.50 1.90
126 127 9.936759 ATTTTATTTCACCGTCAATTTGGTAAT 57.063 25.926 0.00 0.00 36.50 1.89
127 128 9.765795 AATTTTATTTCACCGTCAATTTGGTAA 57.234 25.926 0.00 0.00 36.50 2.85
129 130 9.765795 TTAATTTTATTTCACCGTCAATTTGGT 57.234 25.926 0.00 0.00 39.66 3.67
169 170 9.362539 CGTAAGTAGGTTGTTTACTGTTGATAT 57.637 33.333 0.00 0.00 31.96 1.63
170 171 7.814107 CCGTAAGTAGGTTGTTTACTGTTGATA 59.186 37.037 0.00 0.00 31.96 2.15
171 172 6.647895 CCGTAAGTAGGTTGTTTACTGTTGAT 59.352 38.462 0.00 0.00 31.96 2.57
172 173 5.984926 CCGTAAGTAGGTTGTTTACTGTTGA 59.015 40.000 0.00 0.00 31.96 3.18
173 174 5.984926 TCCGTAAGTAGGTTGTTTACTGTTG 59.015 40.000 0.00 0.00 31.96 3.33
174 175 6.160576 TCCGTAAGTAGGTTGTTTACTGTT 57.839 37.500 0.00 0.00 31.96 3.16
175 176 5.302823 ACTCCGTAAGTAGGTTGTTTACTGT 59.697 40.000 0.00 0.00 36.07 3.55
176 177 5.776744 ACTCCGTAAGTAGGTTGTTTACTG 58.223 41.667 0.00 0.00 36.07 2.74
177 178 6.717084 AGTACTCCGTAAGTAGGTTGTTTACT 59.283 38.462 0.00 0.00 41.17 2.24
178 179 6.914259 AGTACTCCGTAAGTAGGTTGTTTAC 58.086 40.000 0.00 0.00 41.17 2.01
179 180 7.120726 GGTAGTACTCCGTAAGTAGGTTGTTTA 59.879 40.741 0.00 0.00 41.17 2.01
180 181 6.071896 GGTAGTACTCCGTAAGTAGGTTGTTT 60.072 42.308 0.00 0.00 41.17 2.83
181 182 5.416013 GGTAGTACTCCGTAAGTAGGTTGTT 59.584 44.000 0.00 0.00 41.17 2.83
182 183 4.944317 GGTAGTACTCCGTAAGTAGGTTGT 59.056 45.833 0.00 0.00 41.17 3.32
183 184 5.189180 AGGTAGTACTCCGTAAGTAGGTTG 58.811 45.833 0.00 0.00 41.17 3.77
184 185 5.443230 AGGTAGTACTCCGTAAGTAGGTT 57.557 43.478 0.00 0.00 41.17 3.50
185 186 5.663556 AGTAGGTAGTACTCCGTAAGTAGGT 59.336 44.000 0.00 0.00 41.17 3.08
186 187 6.168270 AGTAGGTAGTACTCCGTAAGTAGG 57.832 45.833 0.00 0.00 41.17 3.18
187 188 8.198109 TGTTAGTAGGTAGTACTCCGTAAGTAG 58.802 40.741 0.00 0.00 41.42 2.57
188 189 8.074613 TGTTAGTAGGTAGTACTCCGTAAGTA 57.925 38.462 0.00 0.00 41.42 2.24
189 190 6.947464 TGTTAGTAGGTAGTACTCCGTAAGT 58.053 40.000 0.00 0.00 41.42 2.24
190 191 7.044798 ACTGTTAGTAGGTAGTACTCCGTAAG 58.955 42.308 0.00 0.00 41.42 2.34
191 192 6.947464 ACTGTTAGTAGGTAGTACTCCGTAA 58.053 40.000 0.00 0.32 41.42 3.18
192 193 6.407074 GGACTGTTAGTAGGTAGTACTCCGTA 60.407 46.154 0.00 0.00 41.42 4.02
193 194 5.423886 GACTGTTAGTAGGTAGTACTCCGT 58.576 45.833 0.00 0.00 41.42 4.69
194 195 4.813697 GGACTGTTAGTAGGTAGTACTCCG 59.186 50.000 0.00 0.00 41.42 4.63
195 196 5.104151 AGGGACTGTTAGTAGGTAGTACTCC 60.104 48.000 0.00 0.48 38.35 3.85
196 197 6.000246 AGGGACTGTTAGTAGGTAGTACTC 58.000 45.833 0.00 0.00 38.35 2.59
197 198 7.516450 TTAGGGACTGTTAGTAGGTAGTACT 57.484 40.000 0.00 0.00 42.15 2.73
198 199 7.777440 ACATTAGGGACTGTTAGTAGGTAGTAC 59.223 40.741 0.00 0.00 41.52 2.73
199 200 7.876371 ACATTAGGGACTGTTAGTAGGTAGTA 58.124 38.462 0.00 0.00 41.52 1.82
200 201 6.739664 ACATTAGGGACTGTTAGTAGGTAGT 58.260 40.000 0.00 0.00 41.52 2.73
201 202 7.201893 GGAACATTAGGGACTGTTAGTAGGTAG 60.202 44.444 0.00 0.00 41.52 3.18
202 203 6.608808 GGAACATTAGGGACTGTTAGTAGGTA 59.391 42.308 0.00 0.00 41.52 3.08
203 204 5.424573 GGAACATTAGGGACTGTTAGTAGGT 59.575 44.000 0.00 0.00 41.52 3.08
204 205 5.661759 AGGAACATTAGGGACTGTTAGTAGG 59.338 44.000 0.00 0.00 41.52 3.18
205 206 6.793505 AGGAACATTAGGGACTGTTAGTAG 57.206 41.667 0.00 0.00 41.52 2.57
206 207 6.958192 AGAAGGAACATTAGGGACTGTTAGTA 59.042 38.462 0.00 0.00 41.52 1.82
207 208 5.785940 AGAAGGAACATTAGGGACTGTTAGT 59.214 40.000 0.00 0.00 41.52 2.24
208 209 6.301169 AGAAGGAACATTAGGGACTGTTAG 57.699 41.667 0.00 0.00 41.52 2.34
209 210 6.697641 AAGAAGGAACATTAGGGACTGTTA 57.302 37.500 0.00 0.00 41.52 2.41
210 211 5.584551 AAGAAGGAACATTAGGGACTGTT 57.415 39.130 0.00 0.00 41.52 3.16
211 212 5.584551 AAAGAAGGAACATTAGGGACTGT 57.415 39.130 0.00 0.00 41.52 3.55
212 213 8.581253 AAATAAAGAAGGAACATTAGGGACTG 57.419 34.615 0.00 0.00 41.52 3.51
220 221 8.512138 CCGAGTGTAAAATAAAGAAGGAACATT 58.488 33.333 0.00 0.00 0.00 2.71
221 222 7.361799 GCCGAGTGTAAAATAAAGAAGGAACAT 60.362 37.037 0.00 0.00 0.00 2.71
222 223 6.072893 GCCGAGTGTAAAATAAAGAAGGAACA 60.073 38.462 0.00 0.00 0.00 3.18
223 224 6.072893 TGCCGAGTGTAAAATAAAGAAGGAAC 60.073 38.462 0.00 0.00 0.00 3.62
224 225 5.998981 TGCCGAGTGTAAAATAAAGAAGGAA 59.001 36.000 0.00 0.00 0.00 3.36
225 226 5.553123 TGCCGAGTGTAAAATAAAGAAGGA 58.447 37.500 0.00 0.00 0.00 3.36
226 227 5.873179 TGCCGAGTGTAAAATAAAGAAGG 57.127 39.130 0.00 0.00 0.00 3.46
227 228 7.136119 TGTTTGCCGAGTGTAAAATAAAGAAG 58.864 34.615 0.00 0.00 29.97 2.85
228 229 7.028926 TGTTTGCCGAGTGTAAAATAAAGAA 57.971 32.000 0.00 0.00 29.97 2.52
229 230 6.621316 TGTTTGCCGAGTGTAAAATAAAGA 57.379 33.333 0.00 0.00 29.97 2.52
230 231 6.248420 CGATGTTTGCCGAGTGTAAAATAAAG 59.752 38.462 0.00 0.00 29.97 1.85
231 232 6.081049 CGATGTTTGCCGAGTGTAAAATAAA 58.919 36.000 0.00 0.00 29.97 1.40
232 233 5.179742 ACGATGTTTGCCGAGTGTAAAATAA 59.820 36.000 0.00 0.00 29.97 1.40
233 234 4.691685 ACGATGTTTGCCGAGTGTAAAATA 59.308 37.500 0.00 0.00 29.97 1.40
234 235 3.500680 ACGATGTTTGCCGAGTGTAAAAT 59.499 39.130 0.00 0.00 29.97 1.82
235 236 2.873472 ACGATGTTTGCCGAGTGTAAAA 59.127 40.909 0.00 0.00 29.97 1.52
236 237 2.485903 ACGATGTTTGCCGAGTGTAAA 58.514 42.857 0.00 0.00 0.00 2.01
237 238 2.157834 ACGATGTTTGCCGAGTGTAA 57.842 45.000 0.00 0.00 0.00 2.41
238 239 2.871133 CTACGATGTTTGCCGAGTGTA 58.129 47.619 0.00 0.00 0.00 2.90
239 240 1.710013 CTACGATGTTTGCCGAGTGT 58.290 50.000 0.00 0.00 0.00 3.55
240 241 0.370273 GCTACGATGTTTGCCGAGTG 59.630 55.000 0.00 0.00 0.00 3.51
241 242 0.037697 TGCTACGATGTTTGCCGAGT 60.038 50.000 0.00 0.00 0.00 4.18
242 243 0.370273 GTGCTACGATGTTTGCCGAG 59.630 55.000 0.00 0.00 0.00 4.63
243 244 1.017177 GGTGCTACGATGTTTGCCGA 61.017 55.000 0.00 0.00 0.00 5.54
244 245 1.423845 GGTGCTACGATGTTTGCCG 59.576 57.895 0.00 0.00 0.00 5.69
245 246 1.296056 ACGGTGCTACGATGTTTGCC 61.296 55.000 7.58 0.00 37.61 4.52
246 247 0.179225 CACGGTGCTACGATGTTTGC 60.179 55.000 7.58 0.00 37.61 3.68
247 248 1.126113 GTCACGGTGCTACGATGTTTG 59.874 52.381 2.51 0.00 37.61 2.93
248 249 1.000506 AGTCACGGTGCTACGATGTTT 59.999 47.619 2.51 0.00 37.61 2.83
249 250 0.601558 AGTCACGGTGCTACGATGTT 59.398 50.000 2.51 0.00 37.61 2.71
250 251 0.601558 AAGTCACGGTGCTACGATGT 59.398 50.000 2.51 0.00 37.61 3.06
251 252 1.710013 AAAGTCACGGTGCTACGATG 58.290 50.000 2.51 3.11 37.61 3.84
252 253 2.029290 AGAAAAGTCACGGTGCTACGAT 60.029 45.455 2.51 0.00 37.61 3.73
253 254 1.338973 AGAAAAGTCACGGTGCTACGA 59.661 47.619 2.51 0.00 37.61 3.43
254 255 1.779569 AGAAAAGTCACGGTGCTACG 58.220 50.000 2.51 0.00 40.31 3.51
255 256 3.059800 GTGAAGAAAAGTCACGGTGCTAC 60.060 47.826 2.51 0.00 36.35 3.58
256 257 3.128349 GTGAAGAAAAGTCACGGTGCTA 58.872 45.455 2.51 0.00 36.35 3.49
257 258 1.940613 GTGAAGAAAAGTCACGGTGCT 59.059 47.619 2.51 1.17 36.35 4.40
258 259 1.668751 TGTGAAGAAAAGTCACGGTGC 59.331 47.619 2.51 0.00 46.89 5.01
259 260 4.201910 ACATTGTGAAGAAAAGTCACGGTG 60.202 41.667 0.56 0.56 46.89 4.94
260 261 3.945285 ACATTGTGAAGAAAAGTCACGGT 59.055 39.130 0.00 0.00 46.89 4.83
261 262 4.552166 ACATTGTGAAGAAAAGTCACGG 57.448 40.909 0.00 0.00 46.89 4.94
262 263 6.943981 TCTAACATTGTGAAGAAAAGTCACG 58.056 36.000 0.00 0.00 46.89 4.35
263 264 7.226720 TCCTCTAACATTGTGAAGAAAAGTCAC 59.773 37.037 0.00 0.00 44.67 3.67
264 265 7.279615 TCCTCTAACATTGTGAAGAAAAGTCA 58.720 34.615 0.00 0.00 0.00 3.41
265 266 7.730364 TCCTCTAACATTGTGAAGAAAAGTC 57.270 36.000 0.00 0.00 0.00 3.01
266 267 7.391833 GGATCCTCTAACATTGTGAAGAAAAGT 59.608 37.037 3.84 0.00 0.00 2.66
267 268 7.413438 CGGATCCTCTAACATTGTGAAGAAAAG 60.413 40.741 10.75 0.00 0.00 2.27
268 269 6.371548 CGGATCCTCTAACATTGTGAAGAAAA 59.628 38.462 10.75 0.00 0.00 2.29
269 270 5.874810 CGGATCCTCTAACATTGTGAAGAAA 59.125 40.000 10.75 0.00 0.00 2.52
270 271 5.419542 CGGATCCTCTAACATTGTGAAGAA 58.580 41.667 10.75 0.00 0.00 2.52
271 272 4.141937 CCGGATCCTCTAACATTGTGAAGA 60.142 45.833 10.75 0.00 0.00 2.87
272 273 4.122776 CCGGATCCTCTAACATTGTGAAG 58.877 47.826 10.75 0.00 0.00 3.02
273 274 3.517901 ACCGGATCCTCTAACATTGTGAA 59.482 43.478 9.46 0.00 0.00 3.18
274 275 3.104512 ACCGGATCCTCTAACATTGTGA 58.895 45.455 9.46 0.00 0.00 3.58
275 276 3.543680 ACCGGATCCTCTAACATTGTG 57.456 47.619 9.46 0.00 0.00 3.33
276 277 4.514401 GAAACCGGATCCTCTAACATTGT 58.486 43.478 9.46 0.00 0.00 2.71
277 278 3.555956 CGAAACCGGATCCTCTAACATTG 59.444 47.826 9.46 0.00 0.00 2.82
278 279 3.793559 CGAAACCGGATCCTCTAACATT 58.206 45.455 9.46 0.00 0.00 2.71
279 280 3.454371 CGAAACCGGATCCTCTAACAT 57.546 47.619 9.46 0.00 0.00 2.71
280 281 2.953466 CGAAACCGGATCCTCTAACA 57.047 50.000 9.46 0.00 0.00 2.41
294 295 4.796495 AGGCCCGCCATCCGAAAC 62.796 66.667 8.74 0.00 40.02 2.78
295 296 3.577334 AAAGGCCCGCCATCCGAAA 62.577 57.895 8.74 0.00 40.02 3.46
296 297 3.577334 AAAAGGCCCGCCATCCGAA 62.577 57.895 8.74 0.00 40.02 4.30
297 298 4.041762 AAAAGGCCCGCCATCCGA 62.042 61.111 8.74 0.00 40.02 4.55
298 299 3.825611 CAAAAGGCCCGCCATCCG 61.826 66.667 8.74 0.00 38.92 4.18
299 300 2.225791 GAACAAAAGGCCCGCCATCC 62.226 60.000 8.74 0.00 38.92 3.51
300 301 1.215382 GAACAAAAGGCCCGCCATC 59.785 57.895 8.74 0.00 38.92 3.51
301 302 0.904394 ATGAACAAAAGGCCCGCCAT 60.904 50.000 8.74 0.00 38.92 4.40
302 303 1.532794 ATGAACAAAAGGCCCGCCA 60.533 52.632 8.74 0.00 38.92 5.69
303 304 1.079888 CATGAACAAAAGGCCCGCC 60.080 57.895 0.00 0.00 0.00 6.13
304 305 0.316841 TTCATGAACAAAAGGCCCGC 59.683 50.000 3.38 0.00 0.00 6.13
305 306 1.665735 CGTTCATGAACAAAAGGCCCG 60.666 52.381 32.06 15.27 41.20 6.13
306 307 1.611491 TCGTTCATGAACAAAAGGCCC 59.389 47.619 32.06 7.92 41.20 5.80
307 308 2.922335 GCTCGTTCATGAACAAAAGGCC 60.922 50.000 32.06 13.90 41.20 5.19
308 309 2.030805 AGCTCGTTCATGAACAAAAGGC 60.031 45.455 32.06 25.39 41.20 4.35
309 310 3.904136 AGCTCGTTCATGAACAAAAGG 57.096 42.857 32.06 18.60 41.20 3.11
310 311 5.327091 CCATAGCTCGTTCATGAACAAAAG 58.673 41.667 32.06 25.59 41.20 2.27
311 312 4.379394 GCCATAGCTCGTTCATGAACAAAA 60.379 41.667 32.06 18.57 37.29 2.44
312 313 3.126858 GCCATAGCTCGTTCATGAACAAA 59.873 43.478 32.06 20.72 37.29 2.83
313 314 2.677836 GCCATAGCTCGTTCATGAACAA 59.322 45.455 32.06 18.12 37.29 2.83
314 315 2.279741 GCCATAGCTCGTTCATGAACA 58.720 47.619 32.06 20.24 37.29 3.18
315 316 1.258982 CGCCATAGCTCGTTCATGAAC 59.741 52.381 25.68 25.68 36.60 3.18
316 317 1.570813 CGCCATAGCTCGTTCATGAA 58.429 50.000 3.38 3.38 36.60 2.57
317 318 0.249447 CCGCCATAGCTCGTTCATGA 60.249 55.000 0.00 0.00 36.60 3.07
318 319 1.835483 GCCGCCATAGCTCGTTCATG 61.835 60.000 0.00 0.00 36.60 3.07
319 320 1.595382 GCCGCCATAGCTCGTTCAT 60.595 57.895 0.00 0.00 36.60 2.57
320 321 2.202878 GCCGCCATAGCTCGTTCA 60.203 61.111 0.00 0.00 36.60 3.18
321 322 3.330853 CGCCGCCATAGCTCGTTC 61.331 66.667 0.00 0.00 36.60 3.95
336 337 4.854784 TCGATGTCAGGAGCGCGC 62.855 66.667 26.66 26.66 0.00 6.86
337 338 2.202610 TTCGATGTCAGGAGCGCG 60.203 61.111 0.00 0.00 0.00 6.86
338 339 1.139734 TCTTCGATGTCAGGAGCGC 59.860 57.895 0.00 0.00 0.00 5.92
339 340 0.863538 CGTCTTCGATGTCAGGAGCG 60.864 60.000 0.00 0.00 39.71 5.03
340 341 0.171455 ACGTCTTCGATGTCAGGAGC 59.829 55.000 0.00 0.00 40.62 4.70
341 342 1.468914 TCACGTCTTCGATGTCAGGAG 59.531 52.381 0.00 0.00 40.62 3.69
342 343 1.468914 CTCACGTCTTCGATGTCAGGA 59.531 52.381 0.00 0.00 40.62 3.86
343 344 1.468914 TCTCACGTCTTCGATGTCAGG 59.531 52.381 0.00 0.00 40.62 3.86
344 345 2.477021 CCTCTCACGTCTTCGATGTCAG 60.477 54.545 0.00 0.00 40.62 3.51
345 346 1.468914 CCTCTCACGTCTTCGATGTCA 59.531 52.381 0.00 0.00 40.62 3.58
346 347 1.795889 GCCTCTCACGTCTTCGATGTC 60.796 57.143 0.00 0.00 40.62 3.06
347 348 0.171455 GCCTCTCACGTCTTCGATGT 59.829 55.000 0.00 0.00 40.62 3.06
348 349 0.171231 TGCCTCTCACGTCTTCGATG 59.829 55.000 0.00 0.00 40.62 3.84
349 350 0.171455 GTGCCTCTCACGTCTTCGAT 59.829 55.000 0.00 0.00 40.62 3.59
350 351 1.579932 GTGCCTCTCACGTCTTCGA 59.420 57.895 0.00 0.00 40.62 3.71
351 352 4.154613 GTGCCTCTCACGTCTTCG 57.845 61.111 0.00 0.00 43.34 3.79
358 359 2.105128 CCGATCCGTGCCTCTCAC 59.895 66.667 0.00 0.00 42.23 3.51
359 360 2.044352 TCCGATCCGTGCCTCTCA 60.044 61.111 0.00 0.00 0.00 3.27
360 361 2.413765 GTCCGATCCGTGCCTCTC 59.586 66.667 0.00 0.00 0.00 3.20
361 362 3.518998 CGTCCGATCCGTGCCTCT 61.519 66.667 0.00 0.00 0.00 3.69
362 363 4.570663 CCGTCCGATCCGTGCCTC 62.571 72.222 0.00 0.00 0.00 4.70
364 365 3.067480 TAACCGTCCGATCCGTGCC 62.067 63.158 0.00 0.00 0.00 5.01
365 366 1.875364 GTAACCGTCCGATCCGTGC 60.875 63.158 0.00 0.00 0.00 5.34
366 367 1.016627 TAGTAACCGTCCGATCCGTG 58.983 55.000 0.00 0.00 0.00 4.94
367 368 1.605710 CATAGTAACCGTCCGATCCGT 59.394 52.381 0.00 0.00 0.00 4.69
368 369 1.605710 ACATAGTAACCGTCCGATCCG 59.394 52.381 0.00 0.00 0.00 4.18
369 370 2.861360 GCACATAGTAACCGTCCGATCC 60.861 54.545 0.00 0.00 0.00 3.36
370 371 2.034305 AGCACATAGTAACCGTCCGATC 59.966 50.000 0.00 0.00 0.00 3.69
371 372 2.029623 AGCACATAGTAACCGTCCGAT 58.970 47.619 0.00 0.00 0.00 4.18
372 373 1.133598 CAGCACATAGTAACCGTCCGA 59.866 52.381 0.00 0.00 0.00 4.55
373 374 1.135199 ACAGCACATAGTAACCGTCCG 60.135 52.381 0.00 0.00 0.00 4.79
374 375 2.667473 ACAGCACATAGTAACCGTCC 57.333 50.000 0.00 0.00 0.00 4.79
375 376 4.738740 GTGATACAGCACATAGTAACCGTC 59.261 45.833 0.00 0.00 38.63 4.79
376 377 4.158949 TGTGATACAGCACATAGTAACCGT 59.841 41.667 0.00 0.00 43.35 4.83
377 378 4.678622 TGTGATACAGCACATAGTAACCG 58.321 43.478 0.00 0.00 43.35 4.44
386 387 0.670239 CAGCCGTGTGATACAGCACA 60.670 55.000 0.00 0.00 45.80 4.57
387 388 1.970917 GCAGCCGTGTGATACAGCAC 61.971 60.000 0.00 0.00 35.09 4.40
388 389 1.741401 GCAGCCGTGTGATACAGCA 60.741 57.895 0.00 0.00 35.09 4.41
389 390 2.802667 CGCAGCCGTGTGATACAGC 61.803 63.158 0.00 0.00 36.14 4.40
390 391 3.388134 CGCAGCCGTGTGATACAG 58.612 61.111 0.00 0.00 36.14 2.74
403 404 2.875711 CCAAATTTCGCCGCGCAG 60.876 61.111 8.75 0.00 0.00 5.18
404 405 4.412270 CCCAAATTTCGCCGCGCA 62.412 61.111 8.75 0.00 0.00 6.09
406 407 4.114997 AGCCCAAATTTCGCCGCG 62.115 61.111 6.39 6.39 0.00 6.46
407 408 2.506881 CAGCCCAAATTTCGCCGC 60.507 61.111 3.65 0.00 0.00 6.53
408 409 2.181525 CCAGCCCAAATTTCGCCG 59.818 61.111 3.65 0.00 0.00 6.46
409 410 1.215382 GACCAGCCCAAATTTCGCC 59.785 57.895 3.65 0.00 0.00 5.54
410 411 1.154035 CGACCAGCCCAAATTTCGC 60.154 57.895 0.00 0.00 0.00 4.70
411 412 0.168128 GTCGACCAGCCCAAATTTCG 59.832 55.000 3.51 0.00 0.00 3.46
412 413 1.200020 CAGTCGACCAGCCCAAATTTC 59.800 52.381 13.01 0.00 0.00 2.17
413 414 1.247567 CAGTCGACCAGCCCAAATTT 58.752 50.000 13.01 0.00 0.00 1.82
414 415 0.609131 CCAGTCGACCAGCCCAAATT 60.609 55.000 13.01 0.00 0.00 1.82
415 416 1.002134 CCAGTCGACCAGCCCAAAT 60.002 57.895 13.01 0.00 0.00 2.32
416 417 2.429930 CCAGTCGACCAGCCCAAA 59.570 61.111 13.01 0.00 0.00 3.28
417 418 4.329545 GCCAGTCGACCAGCCCAA 62.330 66.667 13.01 0.00 0.00 4.12
436 437 2.048690 TTTCATTTTGGGCCGCGC 60.049 55.556 0.00 0.00 0.00 6.86
437 438 1.736282 GGTTTCATTTTGGGCCGCG 60.736 57.895 0.00 0.00 0.00 6.46
438 439 0.948623 GTGGTTTCATTTTGGGCCGC 60.949 55.000 0.00 0.00 0.00 6.53
439 440 0.665972 CGTGGTTTCATTTTGGGCCG 60.666 55.000 0.00 0.00 0.00 6.13
440 441 0.948623 GCGTGGTTTCATTTTGGGCC 60.949 55.000 0.00 0.00 0.00 5.80
441 442 0.249657 TGCGTGGTTTCATTTTGGGC 60.250 50.000 0.00 0.00 0.00 5.36
442 443 2.336667 GATGCGTGGTTTCATTTTGGG 58.663 47.619 0.00 0.00 0.00 4.12
443 444 1.984990 CGATGCGTGGTTTCATTTTGG 59.015 47.619 0.00 0.00 0.00 3.28
444 445 2.660490 ACGATGCGTGGTTTCATTTTG 58.340 42.857 0.00 0.00 39.18 2.44
456 457 2.095768 CCTTGTTTTGATCACGATGCGT 60.096 45.455 0.00 0.00 42.36 5.24
457 458 2.508867 CCTTGTTTTGATCACGATGCG 58.491 47.619 0.00 0.00 0.00 4.73
458 459 2.487762 TCCCTTGTTTTGATCACGATGC 59.512 45.455 0.00 0.00 0.00 3.91
459 460 3.426695 GCTCCCTTGTTTTGATCACGATG 60.427 47.826 0.00 0.00 0.00 3.84
460 461 2.749621 GCTCCCTTGTTTTGATCACGAT 59.250 45.455 0.00 0.00 0.00 3.73
461 462 2.151202 GCTCCCTTGTTTTGATCACGA 58.849 47.619 0.00 0.00 0.00 4.35
462 463 1.135972 CGCTCCCTTGTTTTGATCACG 60.136 52.381 0.00 0.00 0.00 4.35
463 464 2.151202 TCGCTCCCTTGTTTTGATCAC 58.849 47.619 0.00 0.00 0.00 3.06
464 465 2.426522 CTCGCTCCCTTGTTTTGATCA 58.573 47.619 0.00 0.00 0.00 2.92
465 466 1.131315 GCTCGCTCCCTTGTTTTGATC 59.869 52.381 0.00 0.00 0.00 2.92
466 467 1.168714 GCTCGCTCCCTTGTTTTGAT 58.831 50.000 0.00 0.00 0.00 2.57
467 468 1.227999 CGCTCGCTCCCTTGTTTTGA 61.228 55.000 0.00 0.00 0.00 2.69
468 469 1.207593 CGCTCGCTCCCTTGTTTTG 59.792 57.895 0.00 0.00 0.00 2.44
469 470 0.534203 TTCGCTCGCTCCCTTGTTTT 60.534 50.000 0.00 0.00 0.00 2.43
470 471 0.534203 TTTCGCTCGCTCCCTTGTTT 60.534 50.000 0.00 0.00 0.00 2.83
471 472 0.321653 ATTTCGCTCGCTCCCTTGTT 60.322 50.000 0.00 0.00 0.00 2.83
472 473 1.021390 CATTTCGCTCGCTCCCTTGT 61.021 55.000 0.00 0.00 0.00 3.16
473 474 1.717937 CATTTCGCTCGCTCCCTTG 59.282 57.895 0.00 0.00 0.00 3.61
474 475 2.109126 GCATTTCGCTCGCTCCCTT 61.109 57.895 0.00 0.00 37.77 3.95
475 476 2.512515 GCATTTCGCTCGCTCCCT 60.513 61.111 0.00 0.00 37.77 4.20
476 477 3.929948 CGCATTTCGCTCGCTCCC 61.930 66.667 0.00 0.00 39.08 4.30
477 478 3.929948 CCGCATTTCGCTCGCTCC 61.930 66.667 0.00 0.00 39.08 4.70
478 479 2.864931 CTCCGCATTTCGCTCGCTC 61.865 63.158 0.00 0.00 39.08 5.03
479 480 2.887568 CTCCGCATTTCGCTCGCT 60.888 61.111 0.00 0.00 39.08 4.93
480 481 3.929948 CCTCCGCATTTCGCTCGC 61.930 66.667 0.00 0.00 39.08 5.03
481 482 3.264897 CCCTCCGCATTTCGCTCG 61.265 66.667 0.00 0.00 39.08 5.03
482 483 2.666596 ATCCCCTCCGCATTTCGCTC 62.667 60.000 0.00 0.00 39.08 5.03
483 484 2.666596 GATCCCCTCCGCATTTCGCT 62.667 60.000 0.00 0.00 39.08 4.93
484 485 2.203209 ATCCCCTCCGCATTTCGC 60.203 61.111 0.00 0.00 36.73 4.70
485 486 0.179045 AAGATCCCCTCCGCATTTCG 60.179 55.000 0.00 0.00 38.08 3.46
486 487 1.598882 GAAGATCCCCTCCGCATTTC 58.401 55.000 0.00 0.00 0.00 2.17
500 501 2.202756 GGCTTCGCGACGGAAGAT 60.203 61.111 22.32 0.00 44.93 2.40
526 527 0.881118 GGTTGGAATTGCGCTTCTCA 59.119 50.000 9.73 2.89 0.00 3.27
527 528 1.131315 GAGGTTGGAATTGCGCTTCTC 59.869 52.381 9.73 1.41 0.00 2.87
528 529 1.168714 GAGGTTGGAATTGCGCTTCT 58.831 50.000 9.73 0.00 0.00 2.85
529 530 0.179189 CGAGGTTGGAATTGCGCTTC 60.179 55.000 9.73 4.67 0.00 3.86
530 531 1.875963 CGAGGTTGGAATTGCGCTT 59.124 52.632 9.73 0.00 0.00 4.68
531 532 2.690778 GCGAGGTTGGAATTGCGCT 61.691 57.895 9.73 0.00 41.09 5.92
532 533 2.202479 GCGAGGTTGGAATTGCGC 60.202 61.111 0.00 0.00 37.60 6.09
533 534 2.331893 TGGCGAGGTTGGAATTGCG 61.332 57.895 0.00 0.00 0.00 4.85
542 551 2.342648 GAAGACGGTGGCGAGGTT 59.657 61.111 0.00 0.00 0.00 3.50
543 552 3.692406 GGAAGACGGTGGCGAGGT 61.692 66.667 0.00 0.00 0.00 3.85
552 561 3.372554 GAAGGCGGGAGGAAGACGG 62.373 68.421 0.00 0.00 0.00 4.79
591 600 4.421479 ACCGAGAAGGAGCGTGCG 62.421 66.667 0.00 0.00 45.00 5.34
595 604 2.617308 TGTAATAGACCGAGAAGGAGCG 59.383 50.000 0.00 0.00 45.00 5.03
612 621 1.803922 CTGGCGCGACGACATGTAA 60.804 57.895 12.10 0.00 46.51 2.41
654 663 5.425217 AGCAGGGGAAAGAAAGAAAGAAAAA 59.575 36.000 0.00 0.00 0.00 1.94
655 664 4.962362 AGCAGGGGAAAGAAAGAAAGAAAA 59.038 37.500 0.00 0.00 0.00 2.29
656 665 4.342092 CAGCAGGGGAAAGAAAGAAAGAAA 59.658 41.667 0.00 0.00 0.00 2.52
686 695 1.084289 GACGGTTTGGTATGTGGAGC 58.916 55.000 0.00 0.00 0.00 4.70
717 731 0.032813 AATCCCAACCCATCAGCCTG 60.033 55.000 0.00 0.00 0.00 4.85
722 736 1.001503 GGCCAATCCCAACCCATCA 59.998 57.895 0.00 0.00 0.00 3.07
728 742 0.975887 AATGTGTGGCCAATCCCAAC 59.024 50.000 7.24 0.00 36.46 3.77
784 798 7.595311 AAACGTTTGCAGAAAAGAAAGAAAT 57.405 28.000 13.81 0.00 0.00 2.17
810 824 9.933723 TCCTACTATTAGTGTACCTTTGTTTTC 57.066 33.333 6.60 0.00 0.00 2.29
818 832 8.162746 GGTCATACTCCTACTATTAGTGTACCT 58.837 40.741 6.60 0.00 0.00 3.08
820 834 8.915057 TGGTCATACTCCTACTATTAGTGTAC 57.085 38.462 6.60 0.00 0.00 2.90
821 835 8.162085 CCTGGTCATACTCCTACTATTAGTGTA 58.838 40.741 6.60 1.06 0.00 2.90
822 836 7.005296 CCTGGTCATACTCCTACTATTAGTGT 58.995 42.308 6.60 0.00 0.00 3.55
823 837 6.434652 CCCTGGTCATACTCCTACTATTAGTG 59.565 46.154 6.60 0.00 0.00 2.74
826 840 5.222484 CCCCCTGGTCATACTCCTACTATTA 60.222 48.000 0.00 0.00 0.00 0.98
827 841 4.450861 CCCCCTGGTCATACTCCTACTATT 60.451 50.000 0.00 0.00 0.00 1.73
828 842 3.077695 CCCCCTGGTCATACTCCTACTAT 59.922 52.174 0.00 0.00 0.00 2.12
959 995 4.711949 CTGGCGCTTGGAGGTGCT 62.712 66.667 7.64 0.00 41.78 4.40
1167 1209 3.753434 CCGGAGAGCAGCGACAGT 61.753 66.667 0.00 0.00 0.00 3.55
1400 1464 1.227438 CTTGGTTGGTCGGTCACGT 60.227 57.895 0.00 0.00 41.85 4.49
1414 1478 0.249280 GCGGGTTTGTTGGTTCTTGG 60.249 55.000 0.00 0.00 0.00 3.61
1415 1479 0.744281 AGCGGGTTTGTTGGTTCTTG 59.256 50.000 0.00 0.00 0.00 3.02
1416 1480 1.480789 AAGCGGGTTTGTTGGTTCTT 58.519 45.000 0.00 0.00 0.00 2.52
1417 1481 1.136110 CAAAGCGGGTTTGTTGGTTCT 59.864 47.619 21.20 0.00 40.74 3.01
1418 1482 1.566404 CAAAGCGGGTTTGTTGGTTC 58.434 50.000 21.20 0.00 40.74 3.62
1419 1483 0.461163 GCAAAGCGGGTTTGTTGGTT 60.461 50.000 27.37 0.00 46.44 3.67
1420 1484 1.142965 GCAAAGCGGGTTTGTTGGT 59.857 52.632 27.37 0.00 46.44 3.67
1421 1485 1.594021 GGCAAAGCGGGTTTGTTGG 60.594 57.895 27.37 8.54 46.44 3.77
1452 1516 2.362120 AATGGCAGCACCTGGAGC 60.362 61.111 8.14 8.14 40.22 4.70
1593 1657 1.134175 AGCCCTTTTTGTGTTCGTGTG 59.866 47.619 0.00 0.00 0.00 3.82
1594 1658 1.404035 GAGCCCTTTTTGTGTTCGTGT 59.596 47.619 0.00 0.00 0.00 4.49
1595 1659 1.676006 AGAGCCCTTTTTGTGTTCGTG 59.324 47.619 0.00 0.00 0.00 4.35
1598 1662 2.687935 TCACAGAGCCCTTTTTGTGTTC 59.312 45.455 3.73 0.00 41.19 3.18
1600 1664 2.435372 TCACAGAGCCCTTTTTGTGT 57.565 45.000 3.73 0.00 41.19 3.72
1601 1665 4.326504 AAATCACAGAGCCCTTTTTGTG 57.673 40.909 0.00 0.00 41.64 3.33
1603 1667 4.696455 ACAAAATCACAGAGCCCTTTTTG 58.304 39.130 2.39 2.39 39.02 2.44
1604 1668 4.651045 AGACAAAATCACAGAGCCCTTTTT 59.349 37.500 0.00 0.00 0.00 1.94
1605 1669 4.038402 CAGACAAAATCACAGAGCCCTTTT 59.962 41.667 0.00 0.00 0.00 2.27
1606 1670 3.571401 CAGACAAAATCACAGAGCCCTTT 59.429 43.478 0.00 0.00 0.00 3.11
1607 1671 3.152341 CAGACAAAATCACAGAGCCCTT 58.848 45.455 0.00 0.00 0.00 3.95
1608 1672 2.373169 TCAGACAAAATCACAGAGCCCT 59.627 45.455 0.00 0.00 0.00 5.19
1609 1673 2.783135 TCAGACAAAATCACAGAGCCC 58.217 47.619 0.00 0.00 0.00 5.19
1610 1674 5.382618 AATTCAGACAAAATCACAGAGCC 57.617 39.130 0.00 0.00 0.00 4.70
1611 1675 5.118203 GCAAATTCAGACAAAATCACAGAGC 59.882 40.000 0.00 0.00 0.00 4.09
1612 1676 6.444633 AGCAAATTCAGACAAAATCACAGAG 58.555 36.000 0.00 0.00 0.00 3.35
1613 1677 6.395426 AGCAAATTCAGACAAAATCACAGA 57.605 33.333 0.00 0.00 0.00 3.41
1616 1680 5.403466 GTGGAGCAAATTCAGACAAAATCAC 59.597 40.000 0.00 0.00 0.00 3.06
1619 1683 4.549458 CGTGGAGCAAATTCAGACAAAAT 58.451 39.130 0.00 0.00 0.00 1.82
1624 1688 1.808411 TCCGTGGAGCAAATTCAGAC 58.192 50.000 0.00 0.00 0.00 3.51
1639 1703 0.603975 GCAGAGGCTTCAGTTTCCGT 60.604 55.000 0.00 0.00 36.96 4.69
1773 1837 1.908483 GGTGAAGAAGGGCTCCGAT 59.092 57.895 0.00 0.00 0.00 4.18
1881 1945 1.658686 ATGAGACCTCGGTCAGCGAC 61.659 60.000 17.68 5.02 46.76 5.19
1899 1963 2.368875 AGACAGGACGAACCAGTTGAAT 59.631 45.455 0.00 0.00 38.51 2.57
1933 1997 4.451629 TTAGAGGACAATGTTCTCCGAC 57.548 45.455 17.56 0.00 38.87 4.79
1982 2046 2.688526 ATTATTCGGGGTCGACGGCG 62.689 60.000 2.87 2.87 45.92 6.46
2163 2229 5.984725 TGTTACTGGTGAACTGAGAAAGAA 58.015 37.500 0.00 0.00 0.00 2.52
2164 2230 5.607939 TGTTACTGGTGAACTGAGAAAGA 57.392 39.130 0.00 0.00 0.00 2.52
2165 2231 6.867662 ATTGTTACTGGTGAACTGAGAAAG 57.132 37.500 0.00 0.00 0.00 2.62
2167 2233 6.353323 TGAATTGTTACTGGTGAACTGAGAA 58.647 36.000 0.00 0.00 0.00 2.87
2169 2235 5.760253 ACTGAATTGTTACTGGTGAACTGAG 59.240 40.000 0.00 0.00 0.00 3.35
2193 2259 9.784531 GAATTTGGAAGGAATCATGAGATACTA 57.215 33.333 0.09 0.00 33.08 1.82
2209 2280 6.088016 TCATCAGTGTTTGGAATTTGGAAG 57.912 37.500 0.00 0.00 0.00 3.46
2235 2306 2.523015 GCAGCAGCATTACATGAACAC 58.477 47.619 0.00 0.00 41.58 3.32
2320 2391 2.751259 TGCAAAGATCATCAGAGGCAAC 59.249 45.455 0.00 0.00 0.00 4.17
2380 2451 5.794894 TGGAGACTTTCAGATTAACTCACC 58.205 41.667 0.00 0.00 0.00 4.02
2390 2461 6.356556 TGTCTGAATTTTGGAGACTTTCAGA 58.643 36.000 9.84 9.84 45.97 3.27
2393 2464 7.032377 ACTTGTCTGAATTTTGGAGACTTTC 57.968 36.000 0.00 0.00 37.58 2.62
2401 2472 6.332630 ACAGTTCAACTTGTCTGAATTTTGG 58.667 36.000 17.12 0.00 35.36 3.28
2408 2479 3.342719 TGCAACAGTTCAACTTGTCTGA 58.657 40.909 17.12 0.00 0.00 3.27
2520 2614 3.004951 CCATGGAAGCAGAGCCCT 58.995 61.111 5.56 0.00 0.00 5.19
2553 2647 2.673368 GGATTTGTCATGTGTCTCGTCC 59.327 50.000 0.00 0.00 0.00 4.79
2572 2666 1.407656 AAGCCAGAACCGTGTGAGGA 61.408 55.000 0.00 0.00 34.73 3.71
2592 2686 3.206150 TCTGTTTGTTTGGAGCTGACTC 58.794 45.455 0.00 0.00 42.66 3.36
2781 2875 0.327924 TACCCAGTGCATTGACAGGG 59.672 55.000 11.31 5.77 45.98 4.45
2802 2896 3.211865 AGGAAAAACGAAGGGTCTGTTC 58.788 45.455 0.00 0.00 0.00 3.18
2807 2901 2.067013 CTCGAGGAAAAACGAAGGGTC 58.933 52.381 3.91 0.00 38.05 4.46
2809 2903 0.796927 GCTCGAGGAAAAACGAAGGG 59.203 55.000 15.58 0.00 38.05 3.95
2810 2904 1.461127 CTGCTCGAGGAAAAACGAAGG 59.539 52.381 15.58 0.00 38.05 3.46
2811 2905 2.135933 ACTGCTCGAGGAAAAACGAAG 58.864 47.619 15.58 0.00 38.05 3.79
2812 2906 2.132762 GACTGCTCGAGGAAAAACGAA 58.867 47.619 15.58 0.00 38.05 3.85
2815 2922 3.033368 AGAGACTGCTCGAGGAAAAAC 57.967 47.619 15.58 3.81 45.98 2.43
2821 2928 3.442273 AGTAGAAAAGAGACTGCTCGAGG 59.558 47.826 15.58 0.17 45.98 4.63
2832 2939 4.449068 ACACGACATTGCAGTAGAAAAGAG 59.551 41.667 0.00 0.00 0.00 2.85
2849 2956 0.315568 AGTCAGAAGAGCCACACGAC 59.684 55.000 0.00 0.00 0.00 4.34
2852 2959 2.246719 ACAAGTCAGAAGAGCCACAC 57.753 50.000 0.00 0.00 0.00 3.82
2984 3091 7.995488 CCTCTATCTCAAAAACCTGTATCCAAT 59.005 37.037 0.00 0.00 0.00 3.16
3095 3204 0.036577 AGAAGCTGCTGTAGGCTGTG 60.037 55.000 1.35 0.00 42.39 3.66
3100 3209 2.479566 TGGAAAGAAGCTGCTGTAGG 57.520 50.000 1.35 0.00 0.00 3.18
3118 3227 4.872691 CAGAAGTTTGGTCCTGCTACTATG 59.127 45.833 0.00 0.00 0.00 2.23
3200 3541 2.545537 TCTCATGGCATCAGAGCATC 57.454 50.000 0.00 0.00 35.83 3.91
3222 3563 1.032014 TTTGCACCTTGAAGAGTGGC 58.968 50.000 13.19 7.92 34.48 5.01
3229 3572 1.859302 AGTGGGTTTTGCACCTTGAA 58.141 45.000 0.00 0.00 46.38 2.69
3259 3602 1.003233 GCCCGCTCTTCTCAAAGGT 60.003 57.895 0.00 0.00 33.03 3.50
3260 3603 0.393537 ATGCCCGCTCTTCTCAAAGG 60.394 55.000 0.00 0.00 33.03 3.11
3261 3604 0.731417 CATGCCCGCTCTTCTCAAAG 59.269 55.000 0.00 0.00 0.00 2.77
3270 3613 2.639327 AAGCCAAACATGCCCGCTC 61.639 57.895 0.00 0.00 0.00 5.03
3524 3884 2.178580 CCAAGATTTTGGCAGCCCTTA 58.821 47.619 9.64 0.00 46.84 2.69
3540 3900 2.290896 TGCTCAGATTTACCCCACCAAG 60.291 50.000 0.00 0.00 0.00 3.61
3753 4116 6.239120 GCCTGGTAGTCGTGTTATAATCCTTA 60.239 42.308 0.00 0.00 0.00 2.69
3854 4217 1.133025 GCTATGTTGATGTGGTGGTGC 59.867 52.381 0.00 0.00 0.00 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.