>input_sequence_40295
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------------------------------------------------------------------------------AT
GCAGCGCGCCGCGGCCTCCCTCGCCTCCTCCCGCT---CCGCGGCCTGGGCCTGCTCCACCACCTCGCGCCATGCCGCCG
CCTCGTGCTCTGCCGCCGCCCGCCGCGACGCCGTCGTGCCTCTCCGAATTCGCGGCCAAGAGCAGCGGCCCGCCGCCCTC
CCCATGTCACTGTCGCTGCTCTCCGGGAGTCGGCCCCCGCGGACGGCAAAAGCGGCGGCCGCGGCCGCGGAGCTGGCCCC
GG---CGGACGAGGTGGCCGCGGGTGGCGGCATTGCCGGCACGGTGCAGCTCGGCGCCATGATCGTCGCCTGGTACCTCC
TCAACATCTACTTCAACATCTACAACAAGCAGGTACGC----------------CATTGGCATCCCCTCCCCTGTTCCTC
GCCG---TTCGCCGCCCGTCCGTACGTGACCGACCAACCAAGAACCAACAAACCCGCTTTGCCACAACCGCAGGTGCTCC
AGGTGCTGCCATTGCCGCTCCCCTACACCATCACCGCCTTCCAGCTCGCCTTCGGCTCGCTCGTCATCTTCTTCATGTGG
GCCGCCAAGCTCCACCCCGTGCCCAAGCTCTCCGCCGCACAGGTCCGTCAGCCACCCACACGAACACAAAAAGGGCTCTG
TGATTTTGTCTGAATTTGCTCCACGGAAACTGAAGCCTCTGCTCCCGTTCAGCTGGCCAAGATCGCGCCGCTGGCCGCCG
GGCACATGCTGGGCACGGTGTTCACCAACATGAGCCTGGGCAAGGTGGCCGTCTCCTTCACGCACACCGTCAAGGCATCG
GAGCCCTTCTTCACCGTGCTGCTCTCCGCCTTCTTCCTCGGCGAGGTGCCGTCGCCGCTGGTGCTGGGCTCGCTGGTGCC
GATCGTCGGCGGCGTCGCCCTGGCGTCGCTGACCGAGGTCTCATTCAACTGGTTCGTCCTGTCTGCTCCGCTGACCGTCG
GAGAACATTGTCCTCTAATCATGGCCCGATGATTATATTCCCTTTCGCCGTCGACCCCGAATAATTGCGGCCGGGAAGAA
TCCCGTCGCTTTCTCACGGTGC--ATAAACGATTCCGTTGACGCGCAGGGTGGGATTCTGGAGCGCCATGGCGTCGAATC
TGCTCAACCAGACCAGGAATGTGCTCAGCAAGAGGCTCCTCGGCGGCGAAGAGGTGATTCCTTCTTCTTTCTTTCTCAGT
TCACCAGTAACAATTCAGTAG-----TATCTCATGATTCCTTCCAAATTCCAAACACTGATGAATGTGTTCATGTAATGC
TGCTGCAGGAGGAGTTCATGGACGACATAAACCTCTTCTCGGTGATCACCGTGCTGTCCTTCCTCCTATCGTTGCCTCTG
ATGATCTTTGCAGAAGGGGTCAGCTTCTCCCCAGCGTTCCTCCAGAGCACGGTGAGTTAATCTGAAAGTCTCCAAAATTC
AGACAAGTTGAACTGTTGCATCATCATAACTCC-----------------------TAAACTAAATAAACTATTATGAAC
TCTGGCATGTAGGGCCTGAACCTGCAGGAGCTGTGCGTGAGGGCGGCCCTGGCAGGGCTCTGCTTCCATGGCTACCAGAA
GGTGAGGGACGAGACACATGACAAATCCTCACACGGTTCTGGCTTGAGTCAGCTCCAAACAAACAGAATGCATGATCTGT
AACACTGTTACTGACGATGGTCCTGGCAATGGTAATGGCAGCTGTCGTACATGATCCTGGCGAGGGTGTCGCCCGTGACC
CACTCCGTGGCCAACTGCGTCAAGCGTGTGGTGGTCATCGTCTCCTCCGTCCTCTTCTTCCGGACGCCCATCTCCCCTGT
CAATGCACTGGGTAAGAACAGACCCT-------------TCGTTTTTCCTCGAGCAGTCTCTTTTCTACTGCAATGTCGT
GTGGCTCTTCTGACTTGTTTCTCCTTGTAACTGCAGGGACTGGAGCGGCACTGGCGGGAGTTTACCTGTACTCCAGGCTC
AAGAAAGCAAAGCCAAAGAGCTCATGA-----------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
>chr3A_1_TraesCS3A01G130300
CGGATCCTCTAACATTAAGAAGGAAAGTTAGAGAAGCTACAATACCGTAACTTTCCTTCTTTCTATCCATATGATTATGG
CTAAAATGACTTAAATTAATTTGCAAATTAATAATCTATTGTGTACATTACCAAATTGACGGTGAAATAAAATTAATTTT
AAATTATTTATATCAACAGTAAACAACCTACTTACGGAGTACTACCTACTAACAGTCCCTAATGTTCCTTCTTTATTTTA
CACTCGGCAAACATCGTAGCACCGTGACTTTTCTTCACAATGTTAGAGGATCCGGTTTCGGATGGCGGGCCTTTTGTTCA
TGAACGAGCTATGGCGGCGCGCTCCTGACATCGAAGACGTGAGAGGCACGGATCGGACGGTTACTATGTGCTGTATCACA
CGGCTGCGCGGCGAAATTTGGGCTGGTCGACTGGCGGCGCGGCCCAAAATGAAACCACGCATCGTGATCAAAACAAGGGA
GCGAGCGAAATGCGGAGGGGATCTTCCGTCGCGAAGCCGCCGGCCGTGAGAAGC--------GCAATTCCAACCTCGCCA
CCGTCTTCCTCCCGCCTTCCTTTTCCACGCCACTCGTGACGCACGCTCCTTCTCGGTCTATTACATGTCGTCGCGCCAGT
TGACGGCTGCTCTTTCTTTCTTTTTTTCTTTCTTTCTTTCCCCTGCTGTTGCGCGCTCCACATACCAAACCGTCCTTTAT
TTT-----TTCAGGCTGATGGGTTGGGATTGGCCACACATTACATATTCCATTCCACTGCACGTACCGCCCACTGCAATT
TCTTTCTTTTCTGCAAACGTTTAGAAAACAAAGGTACACTAATAG---TAGGAGTATGACCAGGGGGGGACGAATCTGTA
CGGGATCGCGGCGAGATTCACCCGGCGCC---------TCCCTGTAACGTCGTTATACAAGTGTACTTATCTCGGGGG--
--------ACCCTATAAGGGACGGAGGCGGCTCCAGCACCTCCAAGCGCCAGCCAACGGACCAACCGCGGC---CAAGAT
GCAGCGCGCCGCGGCCTCCCTCGCCTCCTCCCGCT---CCGCGGCCTGGGCCTGCTCCACCACCTCGCGCCATGCCGCCG
CCTCGTGCTCTGCCGCCGCCCGCCGCGACGCCGTCGTGCCTCTCCGAATTCGCGGCCAAGAGCAGCGGCCCGCCGCCCTC
CCCATGTCACTGTCGCTGCTCTCCGGGAGTCGGCCCCCGCGGACGGCAAAAGCGGCGGCCGCGGCCGCGGAGCTGGCCCC
GG---CGGACGAGGTGGCCGCGGGTGGCGGCATTGCCGGCACGGTGCAGCTCGGCGCCATGATCGTCGCCTGGTACCTCC
TCAACATCTACTTCAACATCTACAACAAGCAGGTACGC----------------CATTGGCATCCCCTCCCCTGTTCCTC
GCCG---TTCGCCGCCCGTCCGTACGTGACCGACCAACCAAGAACCAACAAACCCGCTTTGCCACAACCGCAGGTGCTCC
AGGTGCTGCCATTGCCGCTCCCCTACACCATCACCGCCTTCCAGCTCGCCTTCGGCTCGCTCGTCATCTTCTTCATGTGG
GCCGCCAAGCTCCACCCCGTGCCCAAGCTCTCCGCCGCACAGGTCCGTCAGCCACCCACACGAACACAAAAAGGGCTCTG
TGATTTTGTCTGAATTTGCTCCACGGAAACTGAAGCCTCTGCTCCCGTTCAGCTGGCCAAGATCGCGCCGCTGGCCGCCG
GGCACATGCTGGGCACGGTGTTCACCAACATGAGCCTGGGCAAGGTGGCCGTCTCCTTCACGCACACCGTCAAGGCATCG
GAGCCCTTCTTCACCGTGCTGCTCTCCGCCTTCTTCCTCGGCGAGGTGCCGTCGCCGCTGGTGCTGGGCTCGCTGGTGCC
GATCGTCGGCGGCGTCGCCCTGGCGTCGCTGACCGAGGTCTCATTCAACTGGTTCGTCCTGTCTGCTCCGCTGACCGTCG
GAGAACATTGTCCTCTAATCATGGCCCGATGATTATATTCCCTTTCGCCGTCGACCCCGAATAATTGCGGCCGGGAAGAA
TCCCGTCGCTTTCTCACGGTGC--ATAAACGATTCCGTTGACGCGCAGGGTGGGATTCTGGAGCGCCATGGCGTCGAATC
TGCTCAACCAGACCAGGAATGTGCTCAGCAAGAGGCTCCTCGGCGGCGAAGAGGTGATTCCTTCTTCTTTCTTTCTCAGT
TCACCAGTAACAATTCAGTAG-----TATCTCATGATTCCTTCCAAATTCCAAACACTGATGAATGTGTTCATGTAATGC
TGCTGCAGGAGGAGTTCATGGACGACATAAACCTCTTCTCGGTGATCACCGTGCTGTCCTTCCTCCTATCGTTGCCTCTG
ATGATCTTTGCAGAAGGGGTCAGCTTCTCCCCAGCGTTCCTCCAGAGCACGGTGAGTTAATCTGAAAGTCTCCAAAATTC
AGACAAGTTGAACTGTTGCATCATCATAACTCC-----------------------TAAACTAAATAAACTATTATGAAC
TCTGGCATGTAGGGCCTGAACCTGCAGGAGCTGTGCGTGAGGGCGGCCCTGGCAGGGCTCTGCTTCCATGGCTACCAGAA
GGTGAGGGACGAGACACATGACAAATCCTCACACGGTTCTGGCTTGAGTCAGCTCCAAACAAACAGAATGCATGATCTGT
AACACTGTTACTGACGATGGTCCTGGCAATGGTAATGGCAGCTGTCGTACATGATCCTGGCGAGGGTGTCGCCCGTGACC
CACTCCGTGGCCAACTGCGTCAAGCGTGTGGTGGTCATCGTCTCCTCCGTCCTCTTCTTCCGGACGCCCATCTCCCCTGT
CAATGCACTGGGTAAGAACAGACCCT-------------TCGTTTTTCCTCGAGCAGTCTCTTTTCTACTGCAATGTCGT
GTGGCTCTTCTGACTTGTTTCTCCTTGTAACTGCAGGGACTGGAGCGGCACTGGCGGGAGTTTACCTGTACTCCAGGCTC
AAGAAAGCAAAGCCAAAGAGCTCATGAAGATGTTTTTTTTATTTTTCTGTATTGGATACAGGTTTTTGAGATAGAGGATT
AGGTCGATATAGTATCCAC--GATAAAATGTATTGAGATAGTAGGTTGTACAGAACTTGCCACGGCCAGTAGTACACTTG
TACCACAGCCTACAGCAGCTTCTTTCCATAGTAGCAGGACCAAACTTCTGGTCTTGAAGATTTGTAACATCCTCCCTGAA
TAATCACAAATCTCCTGACAACATG-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------CAAGATGCTCTGATGCCATGAGAATGC--CACTCTTCAAGGTGCAAAACCCACTTAAAAAGAT
AACCTTTGAGAAGAGCGGGCATGTTTGGCTTGTGCCATTGCAAGCCCTAACAAATCTTGCAAACAATTGGCTAGACATTG
CTTGACCATCTGTTGCCC-AAATCTTTGCAATATGCAAGATCCCATAGGCAACCAAAGTTTTGGCAGCCAACCAAATGGA
AGCCAAAATATTGCCAGC----------------AATTGGCTGGAGGTCGCCAGAAACTGGCAACATCTGAGGAGAGTGG
GCAAGATGGCACAGATAACCAATATTTTGGTAACCAACCAAATTAAGGGCTGCCAAAATCTTGGTGGGGTAAATCTGAGC
ACCAACCAAACATGCCCCTTATGCTTTGAG-AAAACATGC--TAGAGCACAAGCAAGGCACACATGTGCAGGATAGTTCA
GCAGTTCACGTCGGGCATTTCAGTTCAACATCAAGCCATGCCGAGAGCATTTACAACAGCCAACATAACTTACATGGTTC
CGTCCAAAATTCATGGCTCAACCGGTCCGGTTTCCTAAGGATTATAACACGACTACCAGGCATAAAGAGGTCCGAGGTTC
CAGGTTTCATAGAGTACTAACGCCAGCATACGGACACCGTATAAAGCGCCTCCGAGGCACCACCACATCAACATAGCAAA
ATATCCGACACGCTTAACCTATGTCAGCAAAGTTCCAGGACACGCTTTGCTTAAACCAACATG-ACTGATACTACGATTT
GGTT
>chr3D_474
CAACGGAGAGAGCA------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------AAATGCGGAGGGGGTCTCCCGTGGCGAAGCCGCCGGCCGGCCCGCCGTCAGATCGGCAATTCCTGCCTCGCCA
TCGTCTTCCTCCCGCCTTCCTTTTCCACGCCACTCGTGATGCATGCTCCTTCTCGGTCTACTACATGTCGTCGCACCAGT
TGACGGCTGCTCTTTCTTC------TTCTTTCTTTCTTT-CCCTGCTGTTGCGCTCTCCACATACCAAACCGTCCTTTAT
TTTTCGATTTGAGGCGGATGGATTGGGATTGGCGACACATTACATATTCCATTCCACTGCACGTACCGCCCACTGCATTT
TCTTTCTTTTCTGCAAACGTTTAAAAAACATGGTAGTAC---TGGTAATAGGAGTATGACCAGGGGGG-ACGAATCTGTA
CGGGATCGCGGCGAGATTCACCCGGCGCCACCCTCGCCTCCCTGTAACGTCGTTATACAAGTGTACTTATCTCGGGGGAC
CTCGGGGGACCCTATAAGGGACGGAGGCGGCTCCGGCAGCTCCAAGCGCCAGCGAACCAACCACGAGGACACGGCAAGAT
GCAGCGCGCCGCGGCCTCCCTCGCCTCCTCCCGCTCTGCCGCGGCCTGGGCGTGCTCCACCACCTCGCGCCATGCCGCCG
CCGGCGCCTCCTGTTCCCCTCGCCGCGACGCCCTCGTGCCTCTCAGAATTCGCGGCCTGGAGCAGCGGCCCGCCGCCCTC
CCCATGTCCCTGTCGCTGCTCTCCGGCAGTCGGCCCGCGCGGACGGCAAAAGCGGCGGCCGCGGCGGCGGAGCTGGCCCC
GG---CGGACGAGGTGGCCGCGGGCGGCGGCATTGCCGGGACGGTGCAGCTCGGCGCCATGATCGTCGCCTGGTACCTCC
TCAACATCTACTTCAACATCTACAACAAGCAGGTACGCACG--------CGCGCCATTGGCATCCCCTCCCCTGTTCCTC
GCCGGAGTTCGCCGTCCGTGCGTGCGTGACCGACCAAT-------CAACAAACCCGCTTTGCCACAACCGCAGGTCCTCC
AGGTGCTGCCATTGCCGCTCCCCTACACCATCACCGCCTTCCAGCTCGCCTTCGGCTCGCTCGTCATCTTCTTCATGTGG
GCCGCCAAGCTCCACCCCGTGCCCAAGCTCTCCGCCGCACAGGTCCGTCAGCCACCTGAACAACAGTTTTTTC----GTC
TGCTTTTCTCTGAATTTTCTCTCCGGAAACTGAAGCCTCTGCTCCCGTTCAGCTGGCCAAGATCGCGCCGCTGGCCGCCG
GGCACATGCTGGGCACGGTGTTCACCAACATGAGCCTGGGCATGGTGGCCGTCTCCTTCACGCACACCGTTAAGGCCTCG
GAGCCCTTCTTCACCGTCCTGCTCTCCGCCTTCTTCCTCGGCGAGGTGCCGTCGCCGCTGGTGCTGGGCTCGCTGGTGCC
CATCGTCGGCGGCGTCGCCCTGGCATCGTTGACCGAGGTCTCCTTCAACTGGTTCGTCCCGTCTAA----CTAACCATCG
GAGAACATTGTCCTCTAATCATGGCCCGGTGATTATATTCCCTTTTACCGTCGACCCCGAATAATCGGGGCCGGGAAGAA
TCCCGTTGCTTTCTCACGCCACATATATACGATTCCGTTGACGCGCAGGGTCGGATTCTGGAGCGCCATGGCGTCGAATC
TGCTCAACCAGACCAGGAATGTGCTCAGCAAGCGGCTCCTCGGCGGCGAAGAGGTGATTCCTTCCTCTCCTTCT-TCAGT
TCACCAGTAATAACAATTCAG-----CATCTCATGATTCTTTCCAAATTCCAACCACTGATGAGTTTGTTCATGCAATGC
GTCTGCAGGAGGAGTTCATGGACGACATAAACCTCTTCTCGGTGATCACTGTGCTGTCCTTCCTGCTGTCCTTGCCCCTG
ATGATCTTTGCAGAAGGTGTCAGCTTCTCCCCGGCGTTCCTCCAGAGCACCGTGAGTCAACCTCAAAGCCTGCAAAATCC
AGACAAATTGAACTGTTGCATCATCATAACTTCTTTTTTTGCATCATCATAACTCTTAAACTAAATAAACTATTATGAAC
TCTGGCATGTAGGGCCTGAACCTGCAGGAGCTGTGCGTGAGGGCAGCCCTGGCCGGGCTCTGCTTCCATGGCTACCAGAA
GGTGAGAGCCACGTGACAA--------CTCACACGGTTCTGGCTTCAGTCAGCTCCAAACAAACAGAATGCATGATCTGT
AACACTGTAACTGACGATGGTCCTGGCAATGGTAATGGCAGCTGTCGTACATGATCCTGGCGCGGGTGTCGCCCGTGACC
CACTCCGTGGCCAACTGCGTCAAGCGTGTGGTGGTCATCGTCTCCTCCGTCCTCTTCTTCCGGACGCCCATCTCGCCTGT
CAATGCACTGGGTAAAAACAAATTGATCACACTGCAACCTC---------------------TTTCTACTGCAGTCTCTT
GTGGCTCTTCTGACTTGTTTCTCCTTGTAACTGCAGGGACTGGAGCGGCACTGGCAGGAGTTTACCTGTACTCCAGACTC
AAGAAAGCAAAGCCAAAGAGTTCATGAAGATGTTTTTTC---TTTCCTGTTTTGGGTACAGGTTTTTGAGATAGAGGATT
AGGTCGATATAGTATCCAC--GAGAAAATGTATTGAGATAGTAGGTTGTACAGAACTTGCCACGGCCAGTAGTACACTTG
TACTACAGGCTACAGCAGCTTCTTTCAATAGTAGCAGGACCAAACTTCTGGTCTTGAAGATTTGTAACATCCTCCCTGAA
TAATCACAAATCTCCTGACAA-ATG-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------CAATATGCTCAGATGCCATGAGAATACCACACTCCTCAAGGTGCAAAACCAACTTAAAAAGAT
A--------------------------GCTTGTGCCATTGCAAGCCCTAACAAATCTTGCAAACAATTGGCTAGACATTG
CTTGACCATCTGTTGGCCAAAATCTTTGCAATATGCAAGATACCATAGGCAACCAAAATTCTGGCAGCCAACCAAATGGA
TGCCAAAATTTTGCTAGC----------------AATTGGCTGGAGGTCGCCAGAAACTGGCAACATCTGAGGAGAGTGG
GCAAGATGGCACAGATAACCAAAATTTTGGT----------------------------------GGGGTAAATCTGAGC
ACCAACCAAACATGCCCCTTATGCTTTGAGAAAAACGTGC--TAGAGCACAAGCAAGGCACACATGTGCAGGATAGTTCA
GCAGTTCATGTCGGGCATTTCAGTTCAACATCAAGCCATGCCGAGAGCATTTACAACAGCCAACATAACTTACATGGTTC
CGTCCAAAATTCATGGCTCAACCGGTCCGGTTTCCGAAGGATTATAACACGACTACCAGGCATAAAGAGGTCCGAGGTTC
CAGGTTTCATAGAGTACCAACGCCAGCATACGGACACCGTATAAAGCGCCTCCGAGACACCACCACATCAACATAGCAAA
ACATCCGACACGCTTAACCTATGTCAGCAAAGTTCCAGGACACGCTTTGCTTAAACCAACATT-ACTGATACTATGATTT
GGTT
>chr3B_662
TTCTTTCTC-----------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------T-CCCTGTTGTTGCGCTCTCCACATACCAAACCGTCCTTTAT
T------TTTGAGGCGGATGGATTGGGATTGGCCACACATTACATATTCCATTCCAGTGCACGTACCGCCCACTGCAG--
-------TTTCTGCAAACGTTTAAAAAACAAGGTAGTAC---TAG---TAGGAGTATGACCAGGGGGGGACGAATCTGTA
CGGGATCGCGGCGAGATTCACCCGGCGCCACCCTCCCCTCCCTGTAACGTCGTTATACAAGTGTACTTATCTCGGGGG--
--------ACCCTATAAG----GGAGGCGGCTCGGGCAGCTCCAAGCGCCAGCGAACCAACCACGAGGACACGGCGAGAT
GCAGCGCGCCGCGGCCTCCCTCGCCTCCTCCCGCTCCGCGGCTGCCTGGGCGTGCTCCTCCACCTCGCGCCATGCCATCG
CCTCCTGCTCGGCCACCGCCCGCCGCGACGCCGTCGTGCCTCTCCGGATTCGCGGGCAGCAGAAGGTTCCCCT---CCAC
TCCATGTCCCTGTCGCTGCTCTCGCGGAGACGGCCTGCGCGGACGGCAAAAGCGGCGGCTGCTGCGGCGGAACTGGCACC
GGCGTCGGACGAGGTGGCCGCGGGCGGCGGCATTGCCGGCACGGTGCAGCTCGGCGCCATGATCGTCGCCTGGTACCTCC
TCAACATCTACTTCAACATCTACAACAAGCAGGTACGCTACGCACGCGCCGCGCCATTGGCATCCCCTCCCCTGTTCCTC
GCCG----------TCCGTCCGTGCGTGACCGACCACT-------CAACAAACCCGCTTTGCCACAACCGCAGGTTCTCC
AGATGCTGCCATTGCCGCTCCCCTACACCATCACCGCCTTCCAGCTCGCCTTCGGCTCGCTCGTCATCTTCTTCATGTGG
GCCACAAAGCTCCACCCCGTGCCCAAGCTCTCCGCCGCACAGGTCCGTCAGACATTTGAACAACAATTTCTTC----CTC
TGCTTTTCTCTGAATTCGCTCCCCGCGAACTGAAGCCTCTGCTCCCGTTCAGCTGGCCAAGATCGCGCCGCTGGCCGCCG
GGCACATGCTGGGCACGGTGTTCACCAACATGAGCCTGGGCAAGGTAGCCGTCTCCTTCACGCACACCGTCAAGGCGTCC
GAGCCCTTCTTCACCGTGCTGCTCTCCGCCTTCTTCCTCGGTGAGGTGCCGTCGCCGCTGGTGCTGGGCTCGCTGGTGCC
GATCGTCGGCGGCGTCGCCCTGGCATCGCTGACCGAGGTCTCCTTCAACTGGTTCGTCCCGTCTGCTCCGCTGACCACCG
GAGAACATTGTCCCTAAATCATGGCCCGATGATTATATTCCCTTTTGCCGTCGACCCCGAATAATTGGGGCCGGGAAGAA
TCCCGTCGCTTTCTCACGGTACATA--AATGATTCCGTCGAG--GCAGGGTCGGATTCTGGAGCGCCATGGCGTCGAATC
TGCTCAACCAGACCAGGAATGTGCTCAGCAAGCGCCTCCTCGGCGGCGAAGAGGTGATTCCTTCTTCTCCTTCT-TCAGT
TCACCAGTAACAATTCAGCACTGTACTATCTTACGATTCTTTCCAAATCCCAAACACTGATGAATTTGTTCATGTAATGC
TGCAGCAGGAGGAGTTCATGGACGACATAAACCTCTTCTCGGTGATCACCGTGCTGTCCTTCCTCCTATCCTTGCCTCTG
ATGATCTTTGCAGAAGGGGTCAGCTTCTCCCCAGCGTTCCTCCAGAGCACCGTGAGTCAACCTCGAAGTCTGCAAAATCC
AGACAAGTTGAACTGTTGCATCATCATAATTCCTAGTAGACT---------------------AATAAACTATTGTGAAC
TCTGGCTTGTAGGGCCTGAACCTGCAGGAGCTGTGCGTGAGGGCGGCCCTGGCCGGCCTCTGCTTCCATGGCTACCAGAA
GGTGAGAGA-GAGACACATGACAAACCGTCACACGGTTCTGGCTTCAGTCAGCTCCAAACAAACAGAATGCATGATCTGT
AACACTGTTACTGACGATGGTCCTGGCAATGGTAATGGTAGCTGTCGTACATGATCCTGGCGAGGGTGTCGCCCGTGACC
CACTCCGTGGCCAACTGCGTCAAGCGTGTGGTGGTCATCGTCTCCTCCGTCCTCTTCTTCCGGACGCCCATCTCGCCTGT
CAACGCACTGGGTAAAAACAAATTGGCCACACTGCAATCTCTTTTTTACTCGAGCAGTGTCTTTTCTACTGCAATT----
----CTCTTCTGACTTGTTTCTCCTTGCAACTGCAGGGACTGGTGCGGCACTTGCGGGAGTTTACCTGTACTCCAGGCTC
AAGAAAACAAAGCCAAAGAGCTCATGAAGACATTCT------------------GATACAGGTTTTTGTGGTACAAGATT
AGATCGATATAGTTATTCAGAGAGAAAATGTATTGAGATA---GGTTGTACAGAACTTGCCACGGCCAGTAGTACACTTG
TACTACAGGCCACAGCAGCTTCTTTCAGTAGTAACAGGACCAAACTGCTGGTCTTGAAGACTTGTAACATCCTCCCTGAA
TAATGTCAAATCTCCTGACAA-ATACTCCCTCCGTCCAGAAATACTTGTCATCAAAATGAATAAAAAGGGATGTATCTAG
ATACTTGTCATCAAAATGAATAAAAAGGGATGTATCTAGATGTATTTTAGTTCTAGATACATCTTTTTTTGTCCATTTTG
ATGAATAAAAAAGGATGTATCTAGATGTATTTTAGTTCTAGATACATCTTTTTTTGTCCCTTTTGATGACAAGTATTTCC
AGACGGAGGTAGTAGTACAGTATGCTCAGACGCCCTGAGAATACCACATAACAAAT------------------------
----TTTGAGAAAAGCGGGCATGTTTGGCTTGTGCCCCTAGCAAAT--------------------TTTGCAAGACATTG
CTTGACCCTCTGTTGGCCAAAATCTTCGGAATATGCAAGATCACATAGGCAACCAAAATTTTGGTAACCAGCCAAATGAA
AGCCGAACTTTTGCCAACAATCGGCTAGCCAAAAAATTGGCTGGAGGTCGCCAAAAAGTGGCAACATCTGAGTTGAGTTT
GCAAGATGCCACAGATAACCAAAAATTTGGTAACCAACCAAATGAAGGGCTGCCAAAATTTTGGTAGGGTAAATCTGGGC
ACCAACCAAACATTCCCCTTGTGCTGTGAG-AAAACTTGCTATAGAGCACAAGCAAGGCACAGATGTGCACAACAGTTCA
GCAGTTCGCGTGGGGCATTTCAGTTCAACATCAAGCCATGCCGAGAGCATTTACAACAGCCAACATAACTTACATGGTTC
CGTCCAAAATTCATGGCTCAACCGGTCCGGTTTCCGAAAGATTATAACACGACTACCAGGCATAAAGAGGTCCGAGGTTC
CAGGTTTCATAGAGTACTAACGCCAGCATACGGACACCGTATAAAGCGCCTCCGAGACACCACCACATCAACATAGCAAA
ATATCCGACACGCTTAACCTATGTCAGCAAAGTTCCAGGACACGCTTTGCTTAAACCAACATTGACTGATACTACGATTT
GGTT
>SNPs
-SSS-S---S-S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS-------------S---S----S----------------SSSSSSSS----------------SS--------
S--------------------------------------S---S----------------S-------------S-----
------------------SSSSSSS--------------S--------------S-------------------------
----------S----S-----S-------------------------------------------------------S--
-----------------------S-------S-SSSS--SSS--------------------------------------
--------------------------------------------------------------------------------
----------------------------------S---S--------------S---SS----SSS-SSSS---------
---------------------------------------------------S----------------------------
----S-----S---S-------------------------------------------S---------------------
--------S---------------------------S----------------------------S--------------
------------------------S-------------------------------------------------------
--------------------------------------------------------------------------------
--------------S--------S-------------SSSSSSSS------------------------------S----
--------------------------------------------------------------------------------
--------------------------------------------------------SSS--S-SS-SSSSSSSSSSS--S
--S----S--------------S---------------------------------------------------------
----------------------------------------------------------------------------S---
--------------------------------------------------------------------------------
------------------------S-----------------S----------------S----------------S---
---------------------------------------------S---------------------S------------
--------------------S------------------------------S----------------------------
--------------------------------S-----------------------------------SSS-S-S-----
------------------S--------------------S-------------------------S--------------
----------------------------------------------------------------------S---------
--------------------------------------------------S------S--S--S-------S------S-
--------------------------------------------------------------------------------
-----------------------------------------------------S--------------------------
------S------------------S-------------------S----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------S-----
---------------S----S-SSSS---------------S-----S----------S----------------S--S-
--------------------------------------------------------------------------------
--------------------------------------SSSS---S----S-----------------------------
-----------------------S--------------------------------------------------------
---S----S-----------------S-----------------------------------------------------
---------------------S----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------S------S--------------S--------S---------------S------------
-SSS--------S-------------------------------------------------------------------
---------------S-----------------------------------------S----------------------
---------S----------------------------------------------------------------------
----------------------S--------------------S---------------S--------------------
------------------------------------S-------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------S--------------------------------------------
--------------------------------------------------------S-----------------------
--------------------------------------------------------------S-----------------
----
>forward_261
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-ACTCGGCAAACATCGTAGCA-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----
>reverse_1478
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------CCAAGAACCAACAAACCCGC-----------------------
--------------------------------------------------------------------------------
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----
>forward_431
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------CGAAATTTGGGCTGGTCGAC-------------------------------------------------
--------------------------------------------------------------------------------
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----
>reverse_1483
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------AACCAACAAACCCGCTTTGC------------------
--------------------------------------------------------------------------------
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----
>forward_505
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----CGAAATGCGGAGGGGATCTT-------------------------------------------------------
--------------------------------------------------------------------------------
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----
>reverse_1703
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------ACGGAAACTGAAGCCTCTGC--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
>forward_1482
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------TACGTGACCGACCAACCAAG--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
>reverse_3204
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---CACAGCCTACAGCAGCTTCT---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
