Multiple sequence alignment - TraesCS3A01G127900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G127900 chr3A 100.000 4187 0 0 1 4187 104423074 104418888 0.000000e+00 7733
1 TraesCS3A01G127900 chr3B 93.731 2967 102 30 665 3612 137329153 137326252 0.000000e+00 4372
2 TraesCS3A01G127900 chr3B 90.909 242 18 2 3612 3853 137326350 137326113 5.220000e-84 322
3 TraesCS3A01G127900 chr3D 92.730 2476 117 27 622 3052 87932030 87929573 0.000000e+00 3517
4 TraesCS3A01G127900 chr3D 90.155 579 22 16 3039 3612 87929554 87929006 0.000000e+00 721
5 TraesCS3A01G127900 chr3D 85.329 334 27 6 3611 3939 87929105 87928789 4.040000e-85 326
6 TraesCS3A01G127900 chr4D 90.179 560 52 3 1 558 68801936 68802494 0.000000e+00 726
7 TraesCS3A01G127900 chr5B 86.643 554 66 7 10 558 319885229 319884679 1.290000e-169 606


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G127900 chr3A 104418888 104423074 4186 True 7733.000000 7733 100.000000 1 4187 1 chr3A.!!$R1 4186
1 TraesCS3A01G127900 chr3B 137326113 137329153 3040 True 2347.000000 4372 92.320000 665 3853 2 chr3B.!!$R1 3188
2 TraesCS3A01G127900 chr3D 87928789 87932030 3241 True 1521.333333 3517 89.404667 622 3939 3 chr3D.!!$R1 3317
3 TraesCS3A01G127900 chr4D 68801936 68802494 558 False 726.000000 726 90.179000 1 558 1 chr4D.!!$F1 557
4 TraesCS3A01G127900 chr5B 319884679 319885229 550 True 606.000000 606 86.643000 10 558 1 chr5B.!!$R1 548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
614 617 0.031857 ATCCTGATGAAGAGCTCGCG 59.968 55.0 8.37 0.0 0.00 5.87 F
710 713 0.320683 TCACCGAACAGCACATCCTG 60.321 55.0 0.00 0.0 38.78 3.86 F
2408 2438 0.807496 GCTCTCAGTCAATTGTGCCC 59.193 55.0 5.13 0.0 0.00 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2516 2546 0.824109 CAGGGAGGTTATGACGAGCA 59.176 55.0 0.0 0.0 0.0 4.26 R
2711 2768 3.077359 CTGTTCCAAGTAAAGCCTCCAG 58.923 50.0 0.0 0.0 0.0 3.86 R
3522 3621 0.028110 CGCGGAATAGAAAAGCAGCC 59.972 55.0 0.0 0.0 0.0 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 2.476534 AAGACAAAATGGCAGGCGCG 62.477 55.000 0.00 0.00 39.92 6.86
111 113 1.278985 TCAATCTGCGTGGGAGTGATT 59.721 47.619 0.00 0.00 33.76 2.57
114 116 1.672030 CTGCGTGGGAGTGATTGCA 60.672 57.895 0.00 0.00 0.00 4.08
128 130 2.076100 GATTGCACGTGACCTCAATGA 58.924 47.619 22.23 0.00 30.19 2.57
201 203 2.182030 GCAGAACTACGAGCGGCT 59.818 61.111 0.00 0.00 0.00 5.52
234 236 4.113815 CTGGCCGCCCATCTTGGA 62.114 66.667 7.03 0.00 40.96 3.53
261 263 1.599171 CGGATCTGCATCGAGACTGAC 60.599 57.143 0.00 0.00 0.00 3.51
301 304 2.668212 CACGCGGAAGGAGCCAAA 60.668 61.111 12.47 0.00 0.00 3.28
312 315 1.143684 AGGAGCCAAACTTCTCAGCAA 59.856 47.619 0.00 0.00 19.64 3.91
341 344 0.905357 CCCTGGACGTCCTGAAGATT 59.095 55.000 35.26 0.00 37.15 2.40
406 409 2.594592 GGAAGCCAACGGTGCTGT 60.595 61.111 0.00 0.00 39.48 4.40
535 538 1.735571 CCTGGTTGCGTAATAAAGCGT 59.264 47.619 0.00 0.00 35.87 5.07
578 581 3.861341 CATCAACCTGATGTCCCGT 57.139 52.632 8.23 0.00 46.80 5.28
579 582 2.113860 CATCAACCTGATGTCCCGTT 57.886 50.000 8.23 0.00 46.80 4.44
580 583 3.260475 CATCAACCTGATGTCCCGTTA 57.740 47.619 8.23 0.00 46.80 3.18
581 584 3.605634 CATCAACCTGATGTCCCGTTAA 58.394 45.455 8.23 0.00 46.80 2.01
582 585 3.773418 TCAACCTGATGTCCCGTTAAA 57.227 42.857 0.00 0.00 0.00 1.52
583 586 4.088056 TCAACCTGATGTCCCGTTAAAA 57.912 40.909 0.00 0.00 0.00 1.52
584 587 4.462133 TCAACCTGATGTCCCGTTAAAAA 58.538 39.130 0.00 0.00 0.00 1.94
608 611 6.770746 AAAAATCACCATCCTGATGAAGAG 57.229 37.500 8.69 0.00 41.20 2.85
609 612 2.996249 TCACCATCCTGATGAAGAGC 57.004 50.000 8.69 0.00 41.20 4.09
610 613 2.475155 TCACCATCCTGATGAAGAGCT 58.525 47.619 8.69 0.00 41.20 4.09
611 614 2.433604 TCACCATCCTGATGAAGAGCTC 59.566 50.000 5.27 5.27 41.20 4.09
612 615 1.411977 ACCATCCTGATGAAGAGCTCG 59.588 52.381 8.37 0.00 41.20 5.03
613 616 1.500108 CATCCTGATGAAGAGCTCGC 58.500 55.000 8.37 5.34 41.20 5.03
614 617 0.031857 ATCCTGATGAAGAGCTCGCG 59.968 55.000 8.37 0.00 0.00 5.87
615 618 2.236382 CCTGATGAAGAGCTCGCGC 61.236 63.158 8.37 0.00 0.00 6.86
616 619 2.575111 CTGATGAAGAGCTCGCGCG 61.575 63.158 26.76 26.76 42.32 6.86
617 620 2.580867 GATGAAGAGCTCGCGCGT 60.581 61.111 30.98 11.13 42.32 6.01
618 621 2.854214 GATGAAGAGCTCGCGCGTG 61.854 63.158 30.98 28.37 42.32 5.34
710 713 0.320683 TCACCGAACAGCACATCCTG 60.321 55.000 0.00 0.00 38.78 3.86
812 821 2.756283 AACTCCCTCCGCCTCTCG 60.756 66.667 0.00 0.00 38.08 4.04
984 993 1.644786 GCTAAATCGCGGTTGCCTGT 61.645 55.000 4.83 0.00 38.08 4.00
1039 1048 1.592223 CTGGTGTCGTCTTCCCTCC 59.408 63.158 0.00 0.00 0.00 4.30
1102 1111 2.045926 GTGCCGGCACCTTCATCT 60.046 61.111 43.24 0.00 40.79 2.90
1126 1136 3.861840 TCATAGTTCTGAGCTTTTCCCG 58.138 45.455 0.00 0.00 0.00 5.14
1235 1245 3.117794 TCGGTTCACTCGTTTACAGTTG 58.882 45.455 0.00 0.00 0.00 3.16
1270 1288 8.668510 AATGTTACATTCATCTGTACCATCTC 57.331 34.615 4.56 0.00 34.73 2.75
1419 1439 3.952931 AGAGTTGAGCTCATTTCAGCAT 58.047 40.909 19.04 0.00 46.47 3.79
1577 1597 2.578163 TACGCCTGCATGGAGAGTGC 62.578 60.000 16.85 9.75 42.81 4.40
1611 1631 3.465403 CCACCTCCCGGCTCTGAG 61.465 72.222 0.00 0.00 0.00 3.35
1654 1675 6.472887 TGGTGGTTGTTTGGTTTCATTTTAA 58.527 32.000 0.00 0.00 0.00 1.52
1758 1779 0.901827 TCGTTAGCTTCTGGGCATCA 59.098 50.000 0.00 0.00 34.17 3.07
1817 1846 7.481275 TTTTCAAGCTTTATTTTGCTTCCAG 57.519 32.000 0.00 0.00 46.29 3.86
1903 1932 9.820725 TTCTGTTTTGATTTTGATCTCATGTTT 57.179 25.926 0.00 0.00 0.00 2.83
1977 2007 3.318839 CCAGCTTTCCAACAGTTCATGAA 59.681 43.478 3.38 3.38 0.00 2.57
2017 2047 3.006940 TGGTGATTCTAACGTGAATGGC 58.993 45.455 5.90 0.00 36.86 4.40
2155 2185 6.624423 GCACACATGAGCTTCAGAACATTTAT 60.624 38.462 0.00 0.00 0.00 1.40
2392 2422 5.467035 AAGCTATATCTCAGAACCAGCTC 57.533 43.478 7.52 0.00 36.91 4.09
2408 2438 0.807496 GCTCTCAGTCAATTGTGCCC 59.193 55.000 5.13 0.00 0.00 5.36
2516 2546 5.598769 AGTGTCAAAGCTTACTCGTAAGTT 58.401 37.500 15.85 9.01 43.28 2.66
2539 2569 2.695666 CTCGTCATAACCTCCCTGATGT 59.304 50.000 0.00 0.00 0.00 3.06
2620 2676 1.995542 AGCCATGGGAATAGGGTATGG 59.004 52.381 15.13 0.00 40.91 2.74
2682 2738 9.453572 AAGATTTAGCTTCAACAACAGATGATA 57.546 29.630 0.00 0.00 0.00 2.15
2774 2836 3.257873 TGTGCCCTTGATTACAACATTGG 59.742 43.478 0.00 0.00 32.27 3.16
2889 2951 3.134127 GTTGCTAAGCTGCCGGGG 61.134 66.667 2.18 0.00 0.00 5.73
3101 3195 5.105567 TCTTTCACTTGGTGGTTGACTTA 57.894 39.130 0.00 0.00 33.87 2.24
3265 3362 0.170561 TTACTCGACGCTCTTCCTGC 59.829 55.000 0.00 0.00 0.00 4.85
3299 3396 3.469899 TTTGACGCAGGATTTTCATCG 57.530 42.857 0.00 0.00 0.00 3.84
3355 3452 2.589014 CAAGAGCATCCAAGTTTTCGC 58.411 47.619 0.00 0.00 33.66 4.70
3435 3532 4.455533 TCAGGTGATTTCGTTTGGATTCTG 59.544 41.667 0.00 0.00 0.00 3.02
3484 3583 7.282450 GCAGTAATAAATGGTTAGGCTGTTACT 59.718 37.037 0.00 0.00 32.00 2.24
3485 3584 9.174166 CAGTAATAAATGGTTAGGCTGTTACTT 57.826 33.333 0.00 0.00 30.07 2.24
3486 3585 9.749340 AGTAATAAATGGTTAGGCTGTTACTTT 57.251 29.630 0.00 0.00 0.00 2.66
3487 3586 9.783256 GTAATAAATGGTTAGGCTGTTACTTTG 57.217 33.333 0.00 0.00 0.00 2.77
3488 3587 8.417273 AATAAATGGTTAGGCTGTTACTTTGT 57.583 30.769 0.00 0.00 0.00 2.83
3489 3588 9.523168 AATAAATGGTTAGGCTGTTACTTTGTA 57.477 29.630 0.00 0.00 0.00 2.41
3490 3589 6.812879 AATGGTTAGGCTGTTACTTTGTAC 57.187 37.500 0.00 0.00 0.00 2.90
3491 3590 5.556006 TGGTTAGGCTGTTACTTTGTACT 57.444 39.130 0.00 0.00 0.00 2.73
3492 3591 5.932455 TGGTTAGGCTGTTACTTTGTACTT 58.068 37.500 0.00 0.00 0.00 2.24
3493 3592 6.358991 TGGTTAGGCTGTTACTTTGTACTTT 58.641 36.000 0.00 0.00 0.00 2.66
3494 3593 6.829811 TGGTTAGGCTGTTACTTTGTACTTTT 59.170 34.615 0.00 0.00 0.00 2.27
3495 3594 7.339976 TGGTTAGGCTGTTACTTTGTACTTTTT 59.660 33.333 0.00 0.00 0.00 1.94
3524 3623 8.400186 TGAAACAAGTTACTTTGTACTTTAGGC 58.600 33.333 0.00 0.00 40.24 3.93
3525 3624 8.515695 AAACAAGTTACTTTGTACTTTAGGCT 57.484 30.769 0.00 0.00 40.24 4.58
3526 3625 7.492352 ACAAGTTACTTTGTACTTTAGGCTG 57.508 36.000 0.00 0.00 39.40 4.85
3527 3626 6.017357 ACAAGTTACTTTGTACTTTAGGCTGC 60.017 38.462 0.00 0.00 39.40 5.25
3528 3627 5.866207 AGTTACTTTGTACTTTAGGCTGCT 58.134 37.500 0.00 0.00 0.00 4.24
3529 3628 6.296803 AGTTACTTTGTACTTTAGGCTGCTT 58.703 36.000 0.00 0.00 0.00 3.91
3530 3629 6.771267 AGTTACTTTGTACTTTAGGCTGCTTT 59.229 34.615 0.00 0.00 0.00 3.51
3531 3630 7.284716 AGTTACTTTGTACTTTAGGCTGCTTTT 59.715 33.333 0.00 0.00 0.00 2.27
3532 3631 6.073327 ACTTTGTACTTTAGGCTGCTTTTC 57.927 37.500 0.00 0.00 0.00 2.29
3533 3632 5.828328 ACTTTGTACTTTAGGCTGCTTTTCT 59.172 36.000 0.00 0.00 0.00 2.52
3534 3633 6.996282 ACTTTGTACTTTAGGCTGCTTTTCTA 59.004 34.615 0.00 0.00 0.00 2.10
3535 3634 7.665974 ACTTTGTACTTTAGGCTGCTTTTCTAT 59.334 33.333 0.00 0.00 0.00 1.98
3536 3635 7.996098 TTGTACTTTAGGCTGCTTTTCTATT 57.004 32.000 0.00 0.00 0.00 1.73
3537 3636 7.611213 TGTACTTTAGGCTGCTTTTCTATTC 57.389 36.000 0.00 0.00 0.00 1.75
3538 3637 6.598064 TGTACTTTAGGCTGCTTTTCTATTCC 59.402 38.462 0.00 0.00 0.00 3.01
3539 3638 4.636206 ACTTTAGGCTGCTTTTCTATTCCG 59.364 41.667 0.00 0.00 0.00 4.30
3540 3639 1.383523 AGGCTGCTTTTCTATTCCGC 58.616 50.000 0.00 0.00 0.00 5.54
3541 3640 0.028110 GGCTGCTTTTCTATTCCGCG 59.972 55.000 0.00 0.00 0.00 6.46
3542 3641 1.006832 GCTGCTTTTCTATTCCGCGA 58.993 50.000 8.23 0.00 0.00 5.87
3543 3642 1.396996 GCTGCTTTTCTATTCCGCGAA 59.603 47.619 8.23 0.00 0.00 4.70
3544 3643 2.537730 GCTGCTTTTCTATTCCGCGAAG 60.538 50.000 8.23 0.83 0.00 3.79
3545 3644 2.673368 CTGCTTTTCTATTCCGCGAAGT 59.327 45.455 8.23 0.00 0.00 3.01
3546 3645 3.071479 TGCTTTTCTATTCCGCGAAGTT 58.929 40.909 8.23 0.00 0.00 2.66
3547 3646 4.247258 TGCTTTTCTATTCCGCGAAGTTA 58.753 39.130 8.23 0.00 0.00 2.24
3548 3647 4.691685 TGCTTTTCTATTCCGCGAAGTTAA 59.308 37.500 8.23 0.00 0.00 2.01
3549 3648 5.353123 TGCTTTTCTATTCCGCGAAGTTAAT 59.647 36.000 8.23 1.74 0.00 1.40
3550 3649 6.128117 TGCTTTTCTATTCCGCGAAGTTAATT 60.128 34.615 8.23 0.00 0.00 1.40
3551 3650 6.745907 GCTTTTCTATTCCGCGAAGTTAATTT 59.254 34.615 8.23 0.00 0.00 1.82
3552 3651 7.272731 GCTTTTCTATTCCGCGAAGTTAATTTT 59.727 33.333 8.23 0.00 0.00 1.82
3553 3652 8.442605 TTTTCTATTCCGCGAAGTTAATTTTG 57.557 30.769 8.23 0.00 0.00 2.44
3554 3653 6.730960 TCTATTCCGCGAAGTTAATTTTGT 57.269 33.333 8.23 0.00 0.00 2.83
3555 3654 7.136289 TCTATTCCGCGAAGTTAATTTTGTT 57.864 32.000 8.23 0.00 0.00 2.83
3556 3655 7.586747 TCTATTCCGCGAAGTTAATTTTGTTT 58.413 30.769 8.23 0.00 0.00 2.83
3557 3656 5.874892 TTCCGCGAAGTTAATTTTGTTTG 57.125 34.783 8.23 0.00 0.00 2.93
3558 3657 4.922719 TCCGCGAAGTTAATTTTGTTTGT 58.077 34.783 8.23 0.00 0.00 2.83
3559 3658 4.735822 TCCGCGAAGTTAATTTTGTTTGTG 59.264 37.500 8.23 0.00 0.00 3.33
3560 3659 4.501198 CCGCGAAGTTAATTTTGTTTGTGT 59.499 37.500 8.23 0.00 0.00 3.72
3561 3660 5.681982 CCGCGAAGTTAATTTTGTTTGTGTA 59.318 36.000 8.23 0.00 0.00 2.90
3562 3661 6.196724 CCGCGAAGTTAATTTTGTTTGTGTAA 59.803 34.615 8.23 0.00 0.00 2.41
3563 3662 7.096394 CCGCGAAGTTAATTTTGTTTGTGTAAT 60.096 33.333 8.23 0.00 0.00 1.89
3564 3663 7.937294 CGCGAAGTTAATTTTGTTTGTGTAATC 59.063 33.333 0.00 0.00 0.00 1.75
3565 3664 8.747666 GCGAAGTTAATTTTGTTTGTGTAATCA 58.252 29.630 0.46 0.00 0.00 2.57
3569 3668 9.528018 AGTTAATTTTGTTTGTGTAATCACCTG 57.472 29.630 0.00 0.00 43.26 4.00
3570 3669 9.308318 GTTAATTTTGTTTGTGTAATCACCTGT 57.692 29.630 0.00 0.00 43.26 4.00
3571 3670 9.877178 TTAATTTTGTTTGTGTAATCACCTGTT 57.123 25.926 0.00 0.00 43.26 3.16
3572 3671 8.785329 AATTTTGTTTGTGTAATCACCTGTTT 57.215 26.923 0.00 0.00 43.26 2.83
3573 3672 7.820044 TTTTGTTTGTGTAATCACCTGTTTC 57.180 32.000 0.00 0.00 43.26 2.78
3574 3673 5.508200 TGTTTGTGTAATCACCTGTTTCC 57.492 39.130 0.00 0.00 43.26 3.13
3575 3674 4.950475 TGTTTGTGTAATCACCTGTTTCCA 59.050 37.500 0.00 0.00 43.26 3.53
3576 3675 5.163602 TGTTTGTGTAATCACCTGTTTCCAC 60.164 40.000 0.00 0.00 43.26 4.02
3577 3676 3.482436 TGTGTAATCACCTGTTTCCACC 58.518 45.455 0.00 0.00 43.26 4.61
3578 3677 2.482721 GTGTAATCACCTGTTTCCACCG 59.517 50.000 0.00 0.00 38.51 4.94
3579 3678 1.467342 GTAATCACCTGTTTCCACCGC 59.533 52.381 0.00 0.00 0.00 5.68
3580 3679 1.234615 AATCACCTGTTTCCACCGCG 61.235 55.000 0.00 0.00 0.00 6.46
3581 3680 2.107041 ATCACCTGTTTCCACCGCGA 62.107 55.000 8.23 0.00 0.00 5.87
3582 3681 2.030562 ACCTGTTTCCACCGCGAG 59.969 61.111 8.23 0.00 0.00 5.03
3583 3682 3.423154 CCTGTTTCCACCGCGAGC 61.423 66.667 8.23 0.00 0.00 5.03
3584 3683 3.777925 CTGTTTCCACCGCGAGCG 61.778 66.667 8.23 10.86 39.44 5.03
3595 3694 3.264897 GCGAGCGCACCATCGATT 61.265 61.111 19.38 0.00 41.40 3.34
3596 3695 2.923854 CGAGCGCACCATCGATTC 59.076 61.111 11.47 0.00 41.40 2.52
3597 3696 1.878069 CGAGCGCACCATCGATTCA 60.878 57.895 11.47 0.00 41.40 2.57
3598 3697 1.420641 CGAGCGCACCATCGATTCAA 61.421 55.000 11.47 0.00 41.40 2.69
3599 3698 0.726827 GAGCGCACCATCGATTCAAA 59.273 50.000 11.47 0.00 0.00 2.69
3600 3699 0.729116 AGCGCACCATCGATTCAAAG 59.271 50.000 11.47 0.00 0.00 2.77
3601 3700 0.248215 GCGCACCATCGATTCAAAGG 60.248 55.000 0.30 0.00 0.00 3.11
3602 3701 0.248215 CGCACCATCGATTCAAAGGC 60.248 55.000 0.00 0.00 0.00 4.35
3603 3702 1.098050 GCACCATCGATTCAAAGGCT 58.902 50.000 0.00 0.00 0.00 4.58
3604 3703 1.474077 GCACCATCGATTCAAAGGCTT 59.526 47.619 0.00 0.00 0.00 4.35
3605 3704 2.733227 GCACCATCGATTCAAAGGCTTG 60.733 50.000 0.00 0.00 0.00 4.01
3606 3705 2.489329 CACCATCGATTCAAAGGCTTGT 59.511 45.455 0.00 0.00 33.94 3.16
3607 3706 2.489329 ACCATCGATTCAAAGGCTTGTG 59.511 45.455 0.00 1.72 33.94 3.33
3608 3707 2.159338 CCATCGATTCAAAGGCTTGTGG 60.159 50.000 0.00 0.00 33.94 4.17
3609 3708 1.533625 TCGATTCAAAGGCTTGTGGG 58.466 50.000 0.00 0.00 33.94 4.61
3640 3739 6.513806 TTTATGCTGCTTTTCTATTCTGCA 57.486 33.333 0.00 0.00 37.68 4.41
3678 3777 3.553828 ATAATCATCCGTTTCCACCGT 57.446 42.857 0.00 0.00 0.00 4.83
3684 3783 2.660552 CGTTTCCACCGTGAGCGT 60.661 61.111 0.00 0.00 36.15 5.07
3707 3806 2.086869 CATCGATTCAAGGCTTGTGGT 58.913 47.619 25.39 13.25 0.00 4.16
3724 3823 4.140536 TGTGGTGTTGCATTGTCTGAATA 58.859 39.130 0.00 0.00 0.00 1.75
3754 3853 3.424703 ACCTGTGTAATGCATCTTGCTT 58.575 40.909 0.00 0.00 45.31 3.91
3772 3871 9.613428 ATCTTGCTTGTATAAACTTACAGCATA 57.387 29.630 0.00 0.00 36.76 3.14
3809 3908 3.553096 CGAAGAGCAAGGTAGTGACAACT 60.553 47.826 0.00 0.00 40.67 3.16
3810 3909 4.321008 CGAAGAGCAAGGTAGTGACAACTA 60.321 45.833 0.00 0.00 37.88 2.24
3838 3937 1.507562 GCGGATTTTGGGTTGTTTGG 58.492 50.000 0.00 0.00 0.00 3.28
3856 3955 6.710692 GTTTGGAATAATCAAAACAGCCAG 57.289 37.500 5.99 0.00 45.23 4.85
3859 3961 4.220382 TGGAATAATCAAAACAGCCAGGTG 59.780 41.667 0.00 0.00 0.00 4.00
3862 3964 6.321181 GGAATAATCAAAACAGCCAGGTGATA 59.679 38.462 3.46 0.00 0.00 2.15
3863 3965 7.147915 GGAATAATCAAAACAGCCAGGTGATAA 60.148 37.037 3.46 0.00 0.00 1.75
3869 3971 7.957002 TCAAAACAGCCAGGTGATAATTTTTA 58.043 30.769 3.46 0.00 0.00 1.52
3873 3975 9.620259 AAACAGCCAGGTGATAATTTTTAAAAA 57.380 25.926 15.38 15.38 0.00 1.94
3875 3977 9.791801 ACAGCCAGGTGATAATTTTTAAAAATT 57.208 25.926 31.16 31.16 46.85 1.82
3909 4011 8.855110 CAATTTAATTTTTGTAAAAAGGCCCCT 58.145 29.630 0.00 0.00 40.78 4.79
3945 4047 9.699410 ATAAAGGATCATCAACAATACAAAGGA 57.301 29.630 0.00 0.00 0.00 3.36
3946 4048 7.396540 AAGGATCATCAACAATACAAAGGAC 57.603 36.000 0.00 0.00 0.00 3.85
3947 4049 5.888161 AGGATCATCAACAATACAAAGGACC 59.112 40.000 0.00 0.00 0.00 4.46
3948 4050 5.067805 GGATCATCAACAATACAAAGGACCC 59.932 44.000 0.00 0.00 0.00 4.46
3949 4051 4.991776 TCATCAACAATACAAAGGACCCA 58.008 39.130 0.00 0.00 0.00 4.51
3950 4052 5.389520 TCATCAACAATACAAAGGACCCAA 58.610 37.500 0.00 0.00 0.00 4.12
3951 4053 5.835819 TCATCAACAATACAAAGGACCCAAA 59.164 36.000 0.00 0.00 0.00 3.28
3952 4054 5.523438 TCAACAATACAAAGGACCCAAAC 57.477 39.130 0.00 0.00 0.00 2.93
3953 4055 4.956700 TCAACAATACAAAGGACCCAAACA 59.043 37.500 0.00 0.00 0.00 2.83
3954 4056 5.422331 TCAACAATACAAAGGACCCAAACAA 59.578 36.000 0.00 0.00 0.00 2.83
3955 4057 5.941555 ACAATACAAAGGACCCAAACAAA 57.058 34.783 0.00 0.00 0.00 2.83
3956 4058 5.666462 ACAATACAAAGGACCCAAACAAAC 58.334 37.500 0.00 0.00 0.00 2.93
3957 4059 5.423931 ACAATACAAAGGACCCAAACAAACT 59.576 36.000 0.00 0.00 0.00 2.66
3958 4060 6.608002 ACAATACAAAGGACCCAAACAAACTA 59.392 34.615 0.00 0.00 0.00 2.24
3959 4061 6.894339 ATACAAAGGACCCAAACAAACTAG 57.106 37.500 0.00 0.00 0.00 2.57
3960 4062 4.862371 ACAAAGGACCCAAACAAACTAGA 58.138 39.130 0.00 0.00 0.00 2.43
3961 4063 5.265989 ACAAAGGACCCAAACAAACTAGAA 58.734 37.500 0.00 0.00 0.00 2.10
3962 4064 5.717654 ACAAAGGACCCAAACAAACTAGAAA 59.282 36.000 0.00 0.00 0.00 2.52
3963 4065 6.382859 ACAAAGGACCCAAACAAACTAGAAAT 59.617 34.615 0.00 0.00 0.00 2.17
3964 4066 7.093068 ACAAAGGACCCAAACAAACTAGAAATT 60.093 33.333 0.00 0.00 0.00 1.82
3965 4067 8.417884 CAAAGGACCCAAACAAACTAGAAATTA 58.582 33.333 0.00 0.00 0.00 1.40
3966 4068 8.721133 AAGGACCCAAACAAACTAGAAATTAT 57.279 30.769 0.00 0.00 0.00 1.28
3967 4069 9.816787 AAGGACCCAAACAAACTAGAAATTATA 57.183 29.630 0.00 0.00 0.00 0.98
3968 4070 9.990868 AGGACCCAAACAAACTAGAAATTATAT 57.009 29.630 0.00 0.00 0.00 0.86
3984 4086 8.884323 AGAAATTATATTCCAGTCCATAGAGCA 58.116 33.333 0.00 0.00 0.00 4.26
3985 4087 8.854614 AAATTATATTCCAGTCCATAGAGCAC 57.145 34.615 0.00 0.00 0.00 4.40
3986 4088 4.899352 ATATTCCAGTCCATAGAGCACC 57.101 45.455 0.00 0.00 0.00 5.01
3987 4089 1.951209 TTCCAGTCCATAGAGCACCA 58.049 50.000 0.00 0.00 0.00 4.17
3988 4090 1.951209 TCCAGTCCATAGAGCACCAA 58.049 50.000 0.00 0.00 0.00 3.67
3989 4091 2.265367 TCCAGTCCATAGAGCACCAAA 58.735 47.619 0.00 0.00 0.00 3.28
3990 4092 2.027192 TCCAGTCCATAGAGCACCAAAC 60.027 50.000 0.00 0.00 0.00 2.93
3991 4093 2.290260 CCAGTCCATAGAGCACCAAACA 60.290 50.000 0.00 0.00 0.00 2.83
3992 4094 3.411446 CAGTCCATAGAGCACCAAACAA 58.589 45.455 0.00 0.00 0.00 2.83
3993 4095 3.820467 CAGTCCATAGAGCACCAAACAAA 59.180 43.478 0.00 0.00 0.00 2.83
3994 4096 4.460382 CAGTCCATAGAGCACCAAACAAAT 59.540 41.667 0.00 0.00 0.00 2.32
3995 4097 5.047802 CAGTCCATAGAGCACCAAACAAATT 60.048 40.000 0.00 0.00 0.00 1.82
3996 4098 5.539955 AGTCCATAGAGCACCAAACAAATTT 59.460 36.000 0.00 0.00 0.00 1.82
3997 4099 6.719370 AGTCCATAGAGCACCAAACAAATTTA 59.281 34.615 0.00 0.00 0.00 1.40
3998 4100 7.397192 AGTCCATAGAGCACCAAACAAATTTAT 59.603 33.333 0.00 0.00 0.00 1.40
3999 4101 7.702348 GTCCATAGAGCACCAAACAAATTTATC 59.298 37.037 0.00 0.00 0.00 1.75
4000 4102 6.980397 CCATAGAGCACCAAACAAATTTATCC 59.020 38.462 0.00 0.00 0.00 2.59
4001 4103 7.363705 CCATAGAGCACCAAACAAATTTATCCA 60.364 37.037 0.00 0.00 0.00 3.41
4002 4104 5.783111 AGAGCACCAAACAAATTTATCCAC 58.217 37.500 0.00 0.00 0.00 4.02
4003 4105 4.893608 AGCACCAAACAAATTTATCCACC 58.106 39.130 0.00 0.00 0.00 4.61
4004 4106 4.346418 AGCACCAAACAAATTTATCCACCA 59.654 37.500 0.00 0.00 0.00 4.17
4005 4107 5.059833 GCACCAAACAAATTTATCCACCAA 58.940 37.500 0.00 0.00 0.00 3.67
4006 4108 5.529060 GCACCAAACAAATTTATCCACCAAA 59.471 36.000 0.00 0.00 0.00 3.28
4007 4109 6.038714 GCACCAAACAAATTTATCCACCAAAA 59.961 34.615 0.00 0.00 0.00 2.44
4008 4110 7.413644 CACCAAACAAATTTATCCACCAAAAC 58.586 34.615 0.00 0.00 0.00 2.43
4009 4111 6.258947 ACCAAACAAATTTATCCACCAAAACG 59.741 34.615 0.00 0.00 0.00 3.60
4010 4112 6.480320 CCAAACAAATTTATCCACCAAAACGA 59.520 34.615 0.00 0.00 0.00 3.85
4011 4113 7.307101 CCAAACAAATTTATCCACCAAAACGAG 60.307 37.037 0.00 0.00 0.00 4.18
4012 4114 5.227152 ACAAATTTATCCACCAAAACGAGC 58.773 37.500 0.00 0.00 0.00 5.03
4013 4115 4.450082 AATTTATCCACCAAAACGAGCC 57.550 40.909 0.00 0.00 0.00 4.70
4014 4116 1.444836 TTATCCACCAAAACGAGCCG 58.555 50.000 0.00 0.00 0.00 5.52
4015 4117 1.022451 TATCCACCAAAACGAGCCGC 61.022 55.000 0.00 0.00 0.00 6.53
4016 4118 4.038080 CCACCAAAACGAGCCGCC 62.038 66.667 0.00 0.00 0.00 6.13
4017 4119 4.383602 CACCAAAACGAGCCGCCG 62.384 66.667 0.00 0.44 0.00 6.46
4036 4138 3.334751 CACCGCGTCGCACTTGAA 61.335 61.111 18.75 0.00 0.00 2.69
4037 4139 3.036084 ACCGCGTCGCACTTGAAG 61.036 61.111 18.75 0.00 0.00 3.02
4038 4140 4.430423 CCGCGTCGCACTTGAAGC 62.430 66.667 18.75 0.00 39.54 3.86
4039 4141 4.430423 CGCGTCGCACTTGAAGCC 62.430 66.667 18.75 0.00 39.74 4.35
4040 4142 4.430423 GCGTCGCACTTGAAGCCG 62.430 66.667 13.44 0.00 37.39 5.52
4041 4143 3.777925 CGTCGCACTTGAAGCCGG 61.778 66.667 0.00 0.00 0.00 6.13
4042 4144 4.090057 GTCGCACTTGAAGCCGGC 62.090 66.667 21.89 21.89 0.00 6.13
4045 4147 4.043200 GCACTTGAAGCCGGCCAC 62.043 66.667 26.15 18.32 0.00 5.01
4046 4148 2.281761 CACTTGAAGCCGGCCACT 60.282 61.111 26.15 8.16 0.00 4.00
4047 4149 2.032681 ACTTGAAGCCGGCCACTC 59.967 61.111 26.15 18.17 0.00 3.51
4048 4150 2.747855 CTTGAAGCCGGCCACTCC 60.748 66.667 26.15 8.55 0.00 3.85
4066 4168 1.364171 CGATCTACGGCCCTGAAGG 59.636 63.158 0.00 0.00 38.46 3.46
4067 4169 1.107538 CGATCTACGGCCCTGAAGGA 61.108 60.000 0.00 0.00 36.56 3.36
4068 4170 0.389757 GATCTACGGCCCTGAAGGAC 59.610 60.000 0.00 0.00 42.38 3.85
4069 4171 1.049289 ATCTACGGCCCTGAAGGACC 61.049 60.000 0.00 0.00 43.25 4.46
4077 4179 4.680237 CTGAAGGACCGGCGCACA 62.680 66.667 10.83 0.00 0.00 4.57
4078 4180 4.680237 TGAAGGACCGGCGCACAG 62.680 66.667 10.83 0.00 0.00 3.66
4082 4184 4.814294 GGACCGGCGCACAGGTAG 62.814 72.222 19.04 0.00 41.51 3.18
4083 4185 3.755628 GACCGGCGCACAGGTAGA 61.756 66.667 19.04 0.00 41.51 2.59
4084 4186 3.701604 GACCGGCGCACAGGTAGAG 62.702 68.421 19.04 0.00 41.51 2.43
4095 4197 4.547367 GGTAGAGCCGCCGCCATT 62.547 66.667 0.00 0.00 34.57 3.16
4096 4198 3.272334 GTAGAGCCGCCGCCATTG 61.272 66.667 0.00 0.00 34.57 2.82
4097 4199 3.781307 TAGAGCCGCCGCCATTGT 61.781 61.111 0.00 0.00 34.57 2.71
4098 4200 3.733344 TAGAGCCGCCGCCATTGTC 62.733 63.158 0.00 0.00 34.57 3.18
4104 4206 3.849953 GCCGCCATTGTCGTCGTC 61.850 66.667 0.00 0.00 0.00 4.20
4105 4207 3.541831 CCGCCATTGTCGTCGTCG 61.542 66.667 0.00 0.00 38.55 5.12
4106 4208 4.191485 CGCCATTGTCGTCGTCGC 62.191 66.667 0.00 0.00 36.96 5.19
4107 4209 3.849953 GCCATTGTCGTCGTCGCC 61.850 66.667 0.00 0.00 36.96 5.54
4108 4210 3.541831 CCATTGTCGTCGTCGCCG 61.542 66.667 0.00 0.00 36.96 6.46
4109 4211 2.803670 CATTGTCGTCGTCGCCGT 60.804 61.111 0.00 0.00 36.96 5.68
4110 4212 2.049802 ATTGTCGTCGTCGCCGTT 60.050 55.556 0.00 0.00 36.96 4.44
4111 4213 2.369629 ATTGTCGTCGTCGCCGTTG 61.370 57.895 0.00 0.00 36.96 4.10
4112 4214 2.736343 ATTGTCGTCGTCGCCGTTGA 62.736 55.000 0.00 0.00 36.96 3.18
4113 4215 2.726912 GTCGTCGTCGCCGTTGAA 60.727 61.111 0.00 0.00 36.96 2.69
4114 4216 2.084681 GTCGTCGTCGCCGTTGAAT 61.085 57.895 0.00 0.00 36.96 2.57
4115 4217 0.794229 GTCGTCGTCGCCGTTGAATA 60.794 55.000 0.00 0.00 36.96 1.75
4116 4218 0.109827 TCGTCGTCGCCGTTGAATAA 60.110 50.000 0.00 0.00 36.96 1.40
4117 4219 0.709467 CGTCGTCGCCGTTGAATAAA 59.291 50.000 0.00 0.00 35.01 1.40
4118 4220 1.523600 CGTCGTCGCCGTTGAATAAAC 60.524 52.381 0.00 0.00 35.25 2.01
4119 4221 1.070038 TCGTCGCCGTTGAATAAACC 58.930 50.000 0.00 0.00 35.13 3.27
4120 4222 0.791422 CGTCGCCGTTGAATAAACCA 59.209 50.000 0.00 0.00 35.13 3.67
4121 4223 1.201877 CGTCGCCGTTGAATAAACCAG 60.202 52.381 0.00 0.00 35.13 4.00
4122 4224 1.129811 GTCGCCGTTGAATAAACCAGG 59.870 52.381 0.00 0.00 35.13 4.45
4123 4225 1.002201 TCGCCGTTGAATAAACCAGGA 59.998 47.619 0.00 0.00 35.13 3.86
4124 4226 2.014128 CGCCGTTGAATAAACCAGGAT 58.986 47.619 0.00 0.00 35.13 3.24
4125 4227 2.031683 CGCCGTTGAATAAACCAGGATC 59.968 50.000 0.00 0.00 35.13 3.36
4126 4228 3.013921 GCCGTTGAATAAACCAGGATCA 58.986 45.455 0.00 0.00 35.13 2.92
4127 4229 3.181500 GCCGTTGAATAAACCAGGATCAC 60.181 47.826 0.00 0.00 35.13 3.06
4128 4230 3.063452 CCGTTGAATAAACCAGGATCACG 59.937 47.826 0.00 0.00 35.13 4.35
4129 4231 3.930229 CGTTGAATAAACCAGGATCACGA 59.070 43.478 0.00 0.00 35.13 4.35
4130 4232 4.390603 CGTTGAATAAACCAGGATCACGAA 59.609 41.667 0.00 0.00 35.13 3.85
4131 4233 5.628134 GTTGAATAAACCAGGATCACGAAC 58.372 41.667 0.00 0.00 32.13 3.95
4132 4234 4.258543 TGAATAAACCAGGATCACGAACC 58.741 43.478 0.00 0.00 0.00 3.62
4133 4235 3.992943 ATAAACCAGGATCACGAACCA 57.007 42.857 0.00 0.00 0.00 3.67
4134 4236 1.892209 AAACCAGGATCACGAACCAC 58.108 50.000 0.00 0.00 0.00 4.16
4136 4238 2.100631 CCAGGATCACGAACCACGC 61.101 63.158 0.00 0.00 46.94 5.34
4137 4239 2.100631 CAGGATCACGAACCACGCC 61.101 63.158 0.00 0.00 46.94 5.68
4138 4240 2.264794 GGATCACGAACCACGCCT 59.735 61.111 0.00 0.00 46.94 5.52
4139 4241 0.968901 AGGATCACGAACCACGCCTA 60.969 55.000 0.00 0.00 46.94 3.93
4140 4242 0.804933 GGATCACGAACCACGCCTAC 60.805 60.000 0.00 0.00 46.94 3.18
4141 4243 1.138047 GATCACGAACCACGCCTACG 61.138 60.000 0.00 0.00 46.94 3.51
4142 4244 3.475774 CACGAACCACGCCTACGC 61.476 66.667 0.00 0.00 46.94 4.42
4143 4245 4.729856 ACGAACCACGCCTACGCC 62.730 66.667 0.00 0.00 46.94 5.68
4144 4246 4.430765 CGAACCACGCCTACGCCT 62.431 66.667 0.00 0.00 45.53 5.52
4145 4247 2.887360 GAACCACGCCTACGCCTA 59.113 61.111 0.00 0.00 45.53 3.93
4146 4248 1.226888 GAACCACGCCTACGCCTAG 60.227 63.158 0.00 0.00 45.53 3.02
4147 4249 1.660560 GAACCACGCCTACGCCTAGA 61.661 60.000 0.00 0.00 45.53 2.43
4148 4250 1.041447 AACCACGCCTACGCCTAGAT 61.041 55.000 0.00 0.00 45.53 1.98
4149 4251 1.286260 CCACGCCTACGCCTAGATC 59.714 63.158 0.00 0.00 45.53 2.75
4150 4252 1.286260 CACGCCTACGCCTAGATCC 59.714 63.158 0.00 0.00 45.53 3.36
4151 4253 1.152819 ACGCCTACGCCTAGATCCA 60.153 57.895 0.00 0.00 45.53 3.41
4152 4254 1.173444 ACGCCTACGCCTAGATCCAG 61.173 60.000 0.00 0.00 45.53 3.86
4153 4255 1.290639 GCCTACGCCTAGATCCAGC 59.709 63.158 0.00 0.00 0.00 4.85
4159 4261 3.704381 GCCTAGATCCAGCGATACG 57.296 57.895 0.00 0.00 0.00 3.06
4160 4262 1.166129 GCCTAGATCCAGCGATACGA 58.834 55.000 0.00 0.00 0.00 3.43
4161 4263 1.540267 GCCTAGATCCAGCGATACGAA 59.460 52.381 0.00 0.00 0.00 3.85
4162 4264 2.414824 GCCTAGATCCAGCGATACGAAG 60.415 54.545 0.00 0.00 0.00 3.79
4163 4265 3.075148 CCTAGATCCAGCGATACGAAGA 58.925 50.000 0.00 0.00 0.00 2.87
4164 4266 3.120130 CCTAGATCCAGCGATACGAAGAC 60.120 52.174 0.00 0.00 0.00 3.01
4165 4267 1.609555 AGATCCAGCGATACGAAGACC 59.390 52.381 0.00 0.00 0.00 3.85
4166 4268 0.311165 ATCCAGCGATACGAAGACCG 59.689 55.000 0.00 0.00 45.44 4.79
4167 4269 1.299165 CCAGCGATACGAAGACCGG 60.299 63.158 0.00 0.00 43.93 5.28
4168 4270 1.944676 CAGCGATACGAAGACCGGC 60.945 63.158 0.00 0.00 43.93 6.13
4169 4271 3.022914 GCGATACGAAGACCGGCG 61.023 66.667 0.00 0.00 43.93 6.46
4170 4272 3.022914 CGATACGAAGACCGGCGC 61.023 66.667 0.00 0.00 43.93 6.53
4171 4273 2.657620 GATACGAAGACCGGCGCC 60.658 66.667 19.07 19.07 43.93 6.53
4172 4274 4.217159 ATACGAAGACCGGCGCCC 62.217 66.667 23.46 7.02 43.93 6.13
4185 4287 4.326766 CGCCCACACAACGCCTTG 62.327 66.667 0.00 0.00 0.00 3.61
4186 4288 4.645921 GCCCACACAACGCCTTGC 62.646 66.667 0.00 0.00 0.00 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 6.071391 GCCATTTTGTCTTCTCCTTTGGAATA 60.071 38.462 0.00 0.00 0.00 1.75
6 7 4.039124 GCCATTTTGTCTTCTCCTTTGGAA 59.961 41.667 0.00 0.00 0.00 3.53
36 37 1.335689 ACTTCAGTACGTCCGCTTCAC 60.336 52.381 0.00 0.00 0.00 3.18
111 113 1.069978 TCTTCATTGAGGTCACGTGCA 59.930 47.619 11.67 0.00 0.00 4.57
114 116 2.289631 TGCATCTTCATTGAGGTCACGT 60.290 45.455 0.00 0.00 0.00 4.49
117 119 3.708403 ACTGCATCTTCATTGAGGTCA 57.292 42.857 0.00 0.00 0.00 4.02
201 203 2.042537 AGCTCCATCTCGCCCTCA 60.043 61.111 0.00 0.00 0.00 3.86
234 236 1.291588 GATGCAGATCCGGATCGCT 59.708 57.895 37.21 29.05 42.48 4.93
289 292 2.431454 CTGAGAAGTTTGGCTCCTTCC 58.569 52.381 7.45 0.00 38.24 3.46
301 304 1.446907 CGAGGCATTTGCTGAGAAGT 58.553 50.000 2.12 0.00 41.70 3.01
312 315 4.115199 GTCCAGGGCCGAGGCATT 62.115 66.667 16.65 0.00 44.11 3.56
331 334 4.581309 AGCCTCATTTGAATCTTCAGGA 57.419 40.909 0.00 0.00 38.61 3.86
406 409 2.592194 CTAACTTAGCGAGTTCGTGCA 58.408 47.619 11.09 0.00 45.40 4.57
431 434 5.331902 GTGGGTTCATTCACATTACATTCG 58.668 41.667 0.00 0.00 34.32 3.34
465 468 1.079819 CAGACGGCGGAACACTGAT 60.080 57.895 13.24 0.00 0.00 2.90
469 472 3.041940 CCACAGACGGCGGAACAC 61.042 66.667 13.24 0.00 0.00 3.32
490 493 3.282831 GCATGTCGCCTAAAACAAGTT 57.717 42.857 0.00 0.00 32.94 2.66
514 517 1.531058 CGCTTTATTACGCAACCAGGC 60.531 52.381 0.00 0.00 0.00 4.85
561 564 3.992943 TTAACGGGACATCAGGTTGAT 57.007 42.857 0.00 0.00 37.65 2.57
562 565 3.773418 TTTAACGGGACATCAGGTTGA 57.227 42.857 0.00 0.00 0.00 3.18
563 566 4.839668 TTTTTAACGGGACATCAGGTTG 57.160 40.909 0.00 0.00 0.00 3.77
592 595 1.411977 CGAGCTCTTCATCAGGATGGT 59.588 52.381 12.85 0.00 39.24 3.55
593 596 1.873069 GCGAGCTCTTCATCAGGATGG 60.873 57.143 12.85 0.00 39.24 3.51
594 597 1.500108 GCGAGCTCTTCATCAGGATG 58.500 55.000 12.85 2.84 40.09 3.51
595 598 0.031857 CGCGAGCTCTTCATCAGGAT 59.968 55.000 12.85 0.00 0.00 3.24
596 599 1.435105 CGCGAGCTCTTCATCAGGA 59.565 57.895 12.85 0.00 0.00 3.86
597 600 4.009539 CGCGAGCTCTTCATCAGG 57.990 61.111 12.85 0.00 0.00 3.86
710 713 1.475682 ACGGTTCGACTCCAATCTACC 59.524 52.381 6.63 0.00 0.00 3.18
847 856 2.202892 GAGATTGCGGACGGGGTC 60.203 66.667 0.00 0.00 0.00 4.46
984 993 1.001068 TGCATCGACGGGTAAAACAGA 59.999 47.619 0.00 0.00 0.00 3.41
1102 1111 5.003804 GGGAAAAGCTCAGAACTATGAACA 58.996 41.667 0.00 0.00 0.00 3.18
1126 1136 5.332707 GGACCAGTTGAGCGAAAATAAATC 58.667 41.667 0.00 0.00 0.00 2.17
1167 1177 3.998341 CTGACAGCAATTTGGGGATTTTG 59.002 43.478 0.00 0.00 0.00 2.44
1270 1288 9.179552 CTCTTATCAAACAATCTCGTGATAGAG 57.820 37.037 0.00 2.68 35.12 2.43
1419 1439 1.693062 AGCACAAATGGTCATGGCAAA 59.307 42.857 0.00 0.00 0.00 3.68
1577 1597 2.125350 GCTCCAGCCTCACCGAAG 60.125 66.667 0.00 0.00 34.31 3.79
1611 1631 6.715264 ACCACCAGTTTATAGCATTATAAGGC 59.285 38.462 14.09 14.09 34.21 4.35
1623 1643 6.380274 TGAAACCAAACAACCACCAGTTTATA 59.620 34.615 0.00 0.00 36.18 0.98
1627 1647 2.900546 TGAAACCAAACAACCACCAGTT 59.099 40.909 0.00 0.00 40.16 3.16
1654 1675 9.739276 TTTAAATCTCATAGACACTGTTCCATT 57.261 29.630 0.00 0.00 0.00 3.16
1678 1699 7.255486 GCTGAAACTAACCATGTAACCTTCTTT 60.255 37.037 0.00 0.00 0.00 2.52
1701 1722 6.128200 TGTGATAACATTGCAAGTCTAAGCTG 60.128 38.462 4.94 0.00 0.00 4.24
1758 1779 3.721035 GCACAGAGCAAAAAGGACAATT 58.279 40.909 0.00 0.00 44.79 2.32
1884 1913 6.514063 TGTGCAAACATGAGATCAAAATCAA 58.486 32.000 0.00 0.00 34.07 2.57
1977 2007 4.161189 CACCACTGATTCCTGATGAGTAGT 59.839 45.833 0.00 0.00 29.83 2.73
2017 2047 2.352229 CGTGTTGCACTTGTGCCG 60.352 61.111 21.01 13.83 31.34 5.69
2162 2192 8.346300 TGCGTATTTTTGTTACATTTCAAGAGA 58.654 29.630 0.00 0.00 0.00 3.10
2164 2194 8.910666 CATGCGTATTTTTGTTACATTTCAAGA 58.089 29.630 0.00 0.00 0.00 3.02
2289 2319 7.509546 TCAGGATAACCCTTCATGAAGATAAC 58.490 38.462 32.49 20.01 44.85 1.89
2392 2422 1.171308 CAGGGGCACAATTGACTGAG 58.829 55.000 13.59 0.00 0.00 3.35
2408 2438 8.930846 ACAAGATATGATTTAGGGATTTCAGG 57.069 34.615 0.00 0.00 0.00 3.86
2516 2546 0.824109 CAGGGAGGTTATGACGAGCA 59.176 55.000 0.00 0.00 0.00 4.26
2711 2768 3.077359 CTGTTCCAAGTAAAGCCTCCAG 58.923 50.000 0.00 0.00 0.00 3.86
3101 3195 9.029368 CCCCTTTCTGAAGAAAATTTAGAGAAT 57.971 33.333 6.92 0.00 42.72 2.40
3265 3362 2.436670 CGTCAAAACAACAGAACACCG 58.563 47.619 0.00 0.00 0.00 4.94
3299 3396 1.308069 ATCATGGCTGGCAACACGAC 61.308 55.000 8.35 0.00 46.17 4.34
3355 3452 7.894376 AAAGTGGCATTTATTTGTCATGAAG 57.106 32.000 0.00 0.00 33.09 3.02
3435 3532 0.240145 GCAAACGGAGCCCAAAGTAC 59.760 55.000 0.00 0.00 0.00 2.73
3498 3597 8.400186 GCCTAAAGTACAAAGTAACTTGTTTCA 58.600 33.333 0.00 0.00 40.08 2.69
3499 3598 8.618677 AGCCTAAAGTACAAAGTAACTTGTTTC 58.381 33.333 0.00 0.00 40.08 2.78
3500 3599 8.403236 CAGCCTAAAGTACAAAGTAACTTGTTT 58.597 33.333 0.00 0.00 40.08 2.83
3501 3600 7.468220 GCAGCCTAAAGTACAAAGTAACTTGTT 60.468 37.037 0.00 0.00 40.08 2.83
3502 3601 6.017357 GCAGCCTAAAGTACAAAGTAACTTGT 60.017 38.462 0.00 0.00 42.20 3.16
3503 3602 6.204882 AGCAGCCTAAAGTACAAAGTAACTTG 59.795 38.462 0.00 0.00 36.12 3.16
3504 3603 6.296803 AGCAGCCTAAAGTACAAAGTAACTT 58.703 36.000 0.00 0.00 37.54 2.66
3505 3604 5.866207 AGCAGCCTAAAGTACAAAGTAACT 58.134 37.500 0.00 0.00 0.00 2.24
3506 3605 6.555812 AAGCAGCCTAAAGTACAAAGTAAC 57.444 37.500 0.00 0.00 0.00 2.50
3507 3606 7.501225 AGAAAAGCAGCCTAAAGTACAAAGTAA 59.499 33.333 0.00 0.00 0.00 2.24
3508 3607 6.996282 AGAAAAGCAGCCTAAAGTACAAAGTA 59.004 34.615 0.00 0.00 0.00 2.24
3509 3608 5.828328 AGAAAAGCAGCCTAAAGTACAAAGT 59.172 36.000 0.00 0.00 0.00 2.66
3510 3609 6.319141 AGAAAAGCAGCCTAAAGTACAAAG 57.681 37.500 0.00 0.00 0.00 2.77
3511 3610 7.996098 ATAGAAAAGCAGCCTAAAGTACAAA 57.004 32.000 0.00 0.00 0.00 2.83
3512 3611 7.120726 GGAATAGAAAAGCAGCCTAAAGTACAA 59.879 37.037 0.00 0.00 0.00 2.41
3513 3612 6.598064 GGAATAGAAAAGCAGCCTAAAGTACA 59.402 38.462 0.00 0.00 0.00 2.90
3514 3613 6.238130 CGGAATAGAAAAGCAGCCTAAAGTAC 60.238 42.308 0.00 0.00 0.00 2.73
3515 3614 5.815740 CGGAATAGAAAAGCAGCCTAAAGTA 59.184 40.000 0.00 0.00 0.00 2.24
3516 3615 4.636206 CGGAATAGAAAAGCAGCCTAAAGT 59.364 41.667 0.00 0.00 0.00 2.66
3517 3616 4.496507 GCGGAATAGAAAAGCAGCCTAAAG 60.497 45.833 0.00 0.00 0.00 1.85
3518 3617 3.377172 GCGGAATAGAAAAGCAGCCTAAA 59.623 43.478 0.00 0.00 0.00 1.85
3519 3618 2.943033 GCGGAATAGAAAAGCAGCCTAA 59.057 45.455 0.00 0.00 0.00 2.69
3520 3619 2.561569 GCGGAATAGAAAAGCAGCCTA 58.438 47.619 0.00 0.00 0.00 3.93
3521 3620 1.383523 GCGGAATAGAAAAGCAGCCT 58.616 50.000 0.00 0.00 0.00 4.58
3522 3621 0.028110 CGCGGAATAGAAAAGCAGCC 59.972 55.000 0.00 0.00 0.00 4.85
3523 3622 1.006832 TCGCGGAATAGAAAAGCAGC 58.993 50.000 6.13 0.00 0.00 5.25
3524 3623 2.673368 ACTTCGCGGAATAGAAAAGCAG 59.327 45.455 6.13 0.00 0.00 4.24
3525 3624 2.695359 ACTTCGCGGAATAGAAAAGCA 58.305 42.857 6.13 0.00 0.00 3.91
3526 3625 3.741805 AACTTCGCGGAATAGAAAAGC 57.258 42.857 6.13 0.00 0.00 3.51
3527 3626 8.575454 CAAAATTAACTTCGCGGAATAGAAAAG 58.425 33.333 6.13 1.85 0.00 2.27
3528 3627 8.077386 ACAAAATTAACTTCGCGGAATAGAAAA 58.923 29.630 6.13 0.43 0.00 2.29
3529 3628 7.586747 ACAAAATTAACTTCGCGGAATAGAAA 58.413 30.769 6.13 0.00 0.00 2.52
3530 3629 7.136289 ACAAAATTAACTTCGCGGAATAGAA 57.864 32.000 6.13 0.00 0.00 2.10
3531 3630 6.730960 ACAAAATTAACTTCGCGGAATAGA 57.269 33.333 6.13 0.00 0.00 1.98
3532 3631 7.325097 ACAAACAAAATTAACTTCGCGGAATAG 59.675 33.333 6.13 1.34 0.00 1.73
3533 3632 7.113684 CACAAACAAAATTAACTTCGCGGAATA 59.886 33.333 6.13 0.00 0.00 1.75
3534 3633 5.980715 ACAAACAAAATTAACTTCGCGGAAT 59.019 32.000 6.13 0.00 0.00 3.01
3535 3634 5.230306 CACAAACAAAATTAACTTCGCGGAA 59.770 36.000 6.13 0.00 0.00 4.30
3536 3635 4.735822 CACAAACAAAATTAACTTCGCGGA 59.264 37.500 6.13 0.00 0.00 5.54
3537 3636 4.501198 ACACAAACAAAATTAACTTCGCGG 59.499 37.500 6.13 0.00 0.00 6.46
3538 3637 5.613964 ACACAAACAAAATTAACTTCGCG 57.386 34.783 0.00 0.00 0.00 5.87
3539 3638 8.747666 TGATTACACAAACAAAATTAACTTCGC 58.252 29.630 0.00 0.00 0.00 4.70
3549 3648 7.525526 TGGAAACAGGTGATTACACAAACAAAA 60.526 33.333 0.00 0.00 41.61 2.44
3550 3649 6.071334 TGGAAACAGGTGATTACACAAACAAA 60.071 34.615 0.00 0.00 41.61 2.83
3551 3650 5.419155 TGGAAACAGGTGATTACACAAACAA 59.581 36.000 0.00 0.00 41.61 2.83
3552 3651 4.950475 TGGAAACAGGTGATTACACAAACA 59.050 37.500 0.00 0.00 41.61 2.83
3553 3652 5.278604 GTGGAAACAGGTGATTACACAAAC 58.721 41.667 9.77 0.00 43.54 2.93
3554 3653 4.339814 GGTGGAAACAGGTGATTACACAAA 59.660 41.667 15.04 0.00 41.67 2.83
3555 3654 3.886505 GGTGGAAACAGGTGATTACACAA 59.113 43.478 15.04 0.00 41.67 3.33
3556 3655 3.482436 GGTGGAAACAGGTGATTACACA 58.518 45.455 15.04 0.00 41.67 3.72
3557 3656 2.482721 CGGTGGAAACAGGTGATTACAC 59.517 50.000 6.76 6.76 44.46 2.90
3558 3657 2.773487 CGGTGGAAACAGGTGATTACA 58.227 47.619 0.00 0.00 44.46 2.41
3559 3658 1.467342 GCGGTGGAAACAGGTGATTAC 59.533 52.381 0.00 0.00 44.46 1.89
3560 3659 1.816074 GCGGTGGAAACAGGTGATTA 58.184 50.000 0.00 0.00 44.46 1.75
3561 3660 1.234615 CGCGGTGGAAACAGGTGATT 61.235 55.000 0.00 0.00 44.46 2.57
3562 3661 1.671054 CGCGGTGGAAACAGGTGAT 60.671 57.895 0.00 0.00 44.46 3.06
3563 3662 2.280524 CGCGGTGGAAACAGGTGA 60.281 61.111 0.00 0.00 44.46 4.02
3564 3663 2.280524 TCGCGGTGGAAACAGGTG 60.281 61.111 6.13 0.00 44.46 4.00
3565 3664 2.030562 CTCGCGGTGGAAACAGGT 59.969 61.111 6.13 0.00 44.46 4.00
3566 3665 3.423154 GCTCGCGGTGGAAACAGG 61.423 66.667 6.13 0.00 44.46 4.00
3567 3666 3.777925 CGCTCGCGGTGGAAACAG 61.778 66.667 6.13 0.00 44.46 3.16
3578 3677 3.215606 GAATCGATGGTGCGCTCGC 62.216 63.158 9.73 7.38 42.35 5.03
3579 3678 1.420641 TTGAATCGATGGTGCGCTCG 61.421 55.000 9.73 10.01 36.25 5.03
3580 3679 0.726827 TTTGAATCGATGGTGCGCTC 59.273 50.000 9.73 4.47 0.00 5.03
3581 3680 0.729116 CTTTGAATCGATGGTGCGCT 59.271 50.000 9.73 0.00 0.00 5.92
3582 3681 0.248215 CCTTTGAATCGATGGTGCGC 60.248 55.000 0.00 0.00 0.00 6.09
3583 3682 0.248215 GCCTTTGAATCGATGGTGCG 60.248 55.000 0.00 0.00 0.00 5.34
3584 3683 1.098050 AGCCTTTGAATCGATGGTGC 58.902 50.000 0.00 0.00 0.00 5.01
3585 3684 2.489329 ACAAGCCTTTGAATCGATGGTG 59.511 45.455 0.00 0.00 37.73 4.17
3586 3685 2.489329 CACAAGCCTTTGAATCGATGGT 59.511 45.455 0.00 0.00 37.73 3.55
3587 3686 2.159338 CCACAAGCCTTTGAATCGATGG 60.159 50.000 0.00 0.00 37.73 3.51
3588 3687 2.159338 CCCACAAGCCTTTGAATCGATG 60.159 50.000 0.00 0.00 37.73 3.84
3589 3688 2.094675 CCCACAAGCCTTTGAATCGAT 58.905 47.619 0.00 0.00 37.73 3.59
3590 3689 1.533625 CCCACAAGCCTTTGAATCGA 58.466 50.000 0.00 0.00 37.73 3.59
3591 3690 0.527565 CCCCACAAGCCTTTGAATCG 59.472 55.000 0.00 0.00 37.73 3.34
3592 3691 1.632589 ACCCCACAAGCCTTTGAATC 58.367 50.000 0.00 0.00 37.73 2.52
3593 3692 2.110011 ACTACCCCACAAGCCTTTGAAT 59.890 45.455 0.00 0.00 37.73 2.57
3594 3693 1.497286 ACTACCCCACAAGCCTTTGAA 59.503 47.619 0.00 0.00 37.73 2.69
3595 3694 1.145571 ACTACCCCACAAGCCTTTGA 58.854 50.000 0.00 0.00 37.73 2.69
3596 3695 1.995376 AACTACCCCACAAGCCTTTG 58.005 50.000 0.00 0.00 40.24 2.77
3597 3696 4.397919 AATAACTACCCCACAAGCCTTT 57.602 40.909 0.00 0.00 0.00 3.11
3598 3697 4.397919 AAATAACTACCCCACAAGCCTT 57.602 40.909 0.00 0.00 0.00 4.35
3599 3698 5.445964 CATAAATAACTACCCCACAAGCCT 58.554 41.667 0.00 0.00 0.00 4.58
3600 3699 4.037565 GCATAAATAACTACCCCACAAGCC 59.962 45.833 0.00 0.00 0.00 4.35
3601 3700 4.887655 AGCATAAATAACTACCCCACAAGC 59.112 41.667 0.00 0.00 0.00 4.01
3602 3701 5.221048 GCAGCATAAATAACTACCCCACAAG 60.221 44.000 0.00 0.00 0.00 3.16
3603 3702 4.642885 GCAGCATAAATAACTACCCCACAA 59.357 41.667 0.00 0.00 0.00 3.33
3604 3703 4.080015 AGCAGCATAAATAACTACCCCACA 60.080 41.667 0.00 0.00 0.00 4.17
3605 3704 4.461198 AGCAGCATAAATAACTACCCCAC 58.539 43.478 0.00 0.00 0.00 4.61
3606 3705 4.788925 AGCAGCATAAATAACTACCCCA 57.211 40.909 0.00 0.00 0.00 4.96
3607 3706 6.321435 AGAAAAGCAGCATAAATAACTACCCC 59.679 38.462 0.00 0.00 0.00 4.95
3608 3707 7.334844 AGAAAAGCAGCATAAATAACTACCC 57.665 36.000 0.00 0.00 0.00 3.69
3658 3757 3.118555 TCACGGTGGAAACGGATGATTAT 60.119 43.478 8.50 0.00 35.23 1.28
3678 3777 2.481276 CCTTGAATCGATGGTACGCTCA 60.481 50.000 0.00 0.00 0.00 4.26
3684 3783 3.270027 CACAAGCCTTGAATCGATGGTA 58.730 45.455 12.25 0.00 0.00 3.25
3724 3823 4.968259 TGCATTACACAGGTAAGTTCTGT 58.032 39.130 0.00 0.00 45.29 3.41
3754 3853 8.455682 GCAGGTTTTATGCTGTAAGTTTATACA 58.544 33.333 0.00 0.00 40.59 2.29
3772 3871 2.558359 CTCTTCGATTTGGGCAGGTTTT 59.442 45.455 0.00 0.00 0.00 2.43
3809 3908 2.374184 CCAAAATCCGCCCTTGACATA 58.626 47.619 0.00 0.00 0.00 2.29
3810 3909 1.185315 CCAAAATCCGCCCTTGACAT 58.815 50.000 0.00 0.00 0.00 3.06
3815 3914 0.471022 ACAACCCAAAATCCGCCCTT 60.471 50.000 0.00 0.00 0.00 3.95
3838 3937 5.643379 TCACCTGGCTGTTTTGATTATTC 57.357 39.130 0.00 0.00 0.00 1.75
3882 3984 7.596995 GGGGCCTTTTTACAAAAATTAAATTGC 59.403 33.333 0.84 0.00 37.27 3.56
3883 3985 8.855110 AGGGGCCTTTTTACAAAAATTAAATTG 58.145 29.630 0.84 0.00 37.27 2.32
3885 3987 9.733556 CTAGGGGCCTTTTTACAAAAATTAAAT 57.266 29.630 0.84 0.00 37.27 1.40
3898 4000 5.686535 ATAATGGATCTAGGGGCCTTTTT 57.313 39.130 0.84 0.00 0.00 1.94
3930 4032 4.956700 TGTTTGGGTCCTTTGTATTGTTGA 59.043 37.500 0.00 0.00 0.00 3.18
3939 4041 5.845391 TTCTAGTTTGTTTGGGTCCTTTG 57.155 39.130 0.00 0.00 0.00 2.77
3940 4042 7.432148 AATTTCTAGTTTGTTTGGGTCCTTT 57.568 32.000 0.00 0.00 0.00 3.11
3941 4043 8.721133 ATAATTTCTAGTTTGTTTGGGTCCTT 57.279 30.769 0.00 0.00 0.00 3.36
3942 4044 9.990868 ATATAATTTCTAGTTTGTTTGGGTCCT 57.009 29.630 0.00 0.00 0.00 3.85
3958 4060 8.884323 TGCTCTATGGACTGGAATATAATTTCT 58.116 33.333 0.00 0.00 0.00 2.52
3959 4061 8.940952 GTGCTCTATGGACTGGAATATAATTTC 58.059 37.037 0.00 0.00 33.97 2.17
3960 4062 7.885399 GGTGCTCTATGGACTGGAATATAATTT 59.115 37.037 0.00 0.00 37.18 1.82
3961 4063 7.017551 TGGTGCTCTATGGACTGGAATATAATT 59.982 37.037 0.00 0.00 37.18 1.40
3962 4064 6.501805 TGGTGCTCTATGGACTGGAATATAAT 59.498 38.462 0.00 0.00 37.18 1.28
3963 4065 5.843969 TGGTGCTCTATGGACTGGAATATAA 59.156 40.000 0.00 0.00 37.18 0.98
3964 4066 5.402630 TGGTGCTCTATGGACTGGAATATA 58.597 41.667 0.00 0.00 37.18 0.86
3965 4067 4.234550 TGGTGCTCTATGGACTGGAATAT 58.765 43.478 0.00 0.00 37.18 1.28
3966 4068 3.653164 TGGTGCTCTATGGACTGGAATA 58.347 45.455 0.00 0.00 37.18 1.75
3967 4069 2.481441 TGGTGCTCTATGGACTGGAAT 58.519 47.619 0.00 0.00 37.18 3.01
3968 4070 1.951209 TGGTGCTCTATGGACTGGAA 58.049 50.000 0.00 0.00 37.18 3.53
3969 4071 1.951209 TTGGTGCTCTATGGACTGGA 58.049 50.000 0.00 0.00 37.18 3.86
3970 4072 2.290260 TGTTTGGTGCTCTATGGACTGG 60.290 50.000 0.00 0.00 37.18 4.00
3971 4073 3.057969 TGTTTGGTGCTCTATGGACTG 57.942 47.619 0.00 0.00 37.18 3.51
3972 4074 3.788227 TTGTTTGGTGCTCTATGGACT 57.212 42.857 0.00 0.00 37.18 3.85
3973 4075 5.391312 AATTTGTTTGGTGCTCTATGGAC 57.609 39.130 0.00 0.00 36.19 4.02
3974 4076 7.147915 GGATAAATTTGTTTGGTGCTCTATGGA 60.148 37.037 0.00 0.00 0.00 3.41
3975 4077 6.980397 GGATAAATTTGTTTGGTGCTCTATGG 59.020 38.462 0.00 0.00 0.00 2.74
3976 4078 7.489113 GTGGATAAATTTGTTTGGTGCTCTATG 59.511 37.037 0.00 0.00 0.00 2.23
3977 4079 7.363793 GGTGGATAAATTTGTTTGGTGCTCTAT 60.364 37.037 0.00 0.00 0.00 1.98
3978 4080 6.071616 GGTGGATAAATTTGTTTGGTGCTCTA 60.072 38.462 0.00 0.00 0.00 2.43
3979 4081 5.279456 GGTGGATAAATTTGTTTGGTGCTCT 60.279 40.000 0.00 0.00 0.00 4.09
3980 4082 4.929211 GGTGGATAAATTTGTTTGGTGCTC 59.071 41.667 0.00 0.00 0.00 4.26
3981 4083 4.346418 TGGTGGATAAATTTGTTTGGTGCT 59.654 37.500 0.00 0.00 0.00 4.40
3982 4084 4.636249 TGGTGGATAAATTTGTTTGGTGC 58.364 39.130 0.00 0.00 0.00 5.01
3983 4085 7.413644 GTTTTGGTGGATAAATTTGTTTGGTG 58.586 34.615 0.00 0.00 0.00 4.17
3984 4086 6.258947 CGTTTTGGTGGATAAATTTGTTTGGT 59.741 34.615 0.00 0.00 0.00 3.67
3985 4087 6.480320 TCGTTTTGGTGGATAAATTTGTTTGG 59.520 34.615 0.00 0.00 0.00 3.28
3986 4088 7.470289 TCGTTTTGGTGGATAAATTTGTTTG 57.530 32.000 0.00 0.00 0.00 2.93
3987 4089 6.201997 GCTCGTTTTGGTGGATAAATTTGTTT 59.798 34.615 0.00 0.00 0.00 2.83
3988 4090 5.694458 GCTCGTTTTGGTGGATAAATTTGTT 59.306 36.000 0.00 0.00 0.00 2.83
3989 4091 5.227152 GCTCGTTTTGGTGGATAAATTTGT 58.773 37.500 0.00 0.00 0.00 2.83
3990 4092 4.625311 GGCTCGTTTTGGTGGATAAATTTG 59.375 41.667 0.00 0.00 0.00 2.32
3991 4093 4.617298 CGGCTCGTTTTGGTGGATAAATTT 60.617 41.667 0.00 0.00 0.00 1.82
3992 4094 3.119637 CGGCTCGTTTTGGTGGATAAATT 60.120 43.478 0.00 0.00 0.00 1.82
3993 4095 2.422127 CGGCTCGTTTTGGTGGATAAAT 59.578 45.455 0.00 0.00 0.00 1.40
3994 4096 1.807742 CGGCTCGTTTTGGTGGATAAA 59.192 47.619 0.00 0.00 0.00 1.40
3995 4097 1.444836 CGGCTCGTTTTGGTGGATAA 58.555 50.000 0.00 0.00 0.00 1.75
3996 4098 1.022451 GCGGCTCGTTTTGGTGGATA 61.022 55.000 0.00 0.00 0.00 2.59
3997 4099 2.332654 GCGGCTCGTTTTGGTGGAT 61.333 57.895 0.00 0.00 0.00 3.41
3998 4100 2.975799 GCGGCTCGTTTTGGTGGA 60.976 61.111 0.00 0.00 0.00 4.02
3999 4101 4.038080 GGCGGCTCGTTTTGGTGG 62.038 66.667 0.00 0.00 0.00 4.61
4000 4102 4.383602 CGGCGGCTCGTTTTGGTG 62.384 66.667 7.61 0.00 0.00 4.17
4019 4121 3.281751 CTTCAAGTGCGACGCGGTG 62.282 63.158 16.14 12.64 0.00 4.94
4020 4122 3.036084 CTTCAAGTGCGACGCGGT 61.036 61.111 16.14 0.99 0.00 5.68
4021 4123 4.430423 GCTTCAAGTGCGACGCGG 62.430 66.667 16.14 4.83 0.00 6.46
4022 4124 4.430423 GGCTTCAAGTGCGACGCG 62.430 66.667 16.14 3.53 31.25 6.01
4023 4125 4.430423 CGGCTTCAAGTGCGACGC 62.430 66.667 14.19 14.19 0.00 5.19
4024 4126 3.777925 CCGGCTTCAAGTGCGACG 61.778 66.667 0.00 0.00 0.00 5.12
4025 4127 4.090057 GCCGGCTTCAAGTGCGAC 62.090 66.667 22.15 0.00 0.00 5.19
4028 4130 4.043200 GTGGCCGGCTTCAAGTGC 62.043 66.667 28.56 7.32 0.00 4.40
4029 4131 2.281761 AGTGGCCGGCTTCAAGTG 60.282 61.111 28.56 0.00 0.00 3.16
4030 4132 2.032681 GAGTGGCCGGCTTCAAGT 59.967 61.111 28.56 12.55 0.00 3.16
4031 4133 2.747855 GGAGTGGCCGGCTTCAAG 60.748 66.667 28.56 0.00 0.00 3.02
4048 4150 1.107538 TCCTTCAGGGCCGTAGATCG 61.108 60.000 0.00 0.00 36.06 3.69
4049 4151 0.389757 GTCCTTCAGGGCCGTAGATC 59.610 60.000 0.00 0.00 32.49 2.75
4050 4152 2.517609 GTCCTTCAGGGCCGTAGAT 58.482 57.895 0.00 0.00 32.49 1.98
4051 4153 4.029472 GTCCTTCAGGGCCGTAGA 57.971 61.111 0.00 0.00 32.49 2.59
4060 4162 4.680237 TGTGCGCCGGTCCTTCAG 62.680 66.667 4.18 0.00 0.00 3.02
4061 4163 4.680237 CTGTGCGCCGGTCCTTCA 62.680 66.667 4.18 0.00 0.00 3.02
4065 4167 4.814294 CTACCTGTGCGCCGGTCC 62.814 72.222 17.25 0.00 34.76 4.46
4066 4168 3.701604 CTCTACCTGTGCGCCGGTC 62.702 68.421 17.25 0.00 34.76 4.79
4067 4169 3.760035 CTCTACCTGTGCGCCGGT 61.760 66.667 17.83 17.83 37.31 5.28
4078 4180 4.547367 AATGGCGGCGGCTCTACC 62.547 66.667 33.21 13.48 39.81 3.18
4079 4181 3.272334 CAATGGCGGCGGCTCTAC 61.272 66.667 33.21 2.85 39.81 2.59
4080 4182 3.733344 GACAATGGCGGCGGCTCTA 62.733 63.158 33.21 15.02 39.81 2.43
4087 4189 3.849953 GACGACGACAATGGCGGC 61.850 66.667 14.88 9.60 0.00 6.53
4088 4190 3.541831 CGACGACGACAATGGCGG 61.542 66.667 14.88 0.00 42.66 6.13
4089 4191 4.191485 GCGACGACGACAATGGCG 62.191 66.667 7.07 7.07 42.66 5.69
4102 4204 1.129811 CCTGGTTTATTCAACGGCGAC 59.870 52.381 16.62 0.00 36.05 5.19
4103 4205 1.002201 TCCTGGTTTATTCAACGGCGA 59.998 47.619 16.62 0.00 36.05 5.54
4104 4206 1.444836 TCCTGGTTTATTCAACGGCG 58.555 50.000 4.80 4.80 36.05 6.46
4105 4207 3.013921 TGATCCTGGTTTATTCAACGGC 58.986 45.455 0.00 0.00 36.05 5.68
4106 4208 3.063452 CGTGATCCTGGTTTATTCAACGG 59.937 47.826 0.00 0.00 36.05 4.44
4107 4209 3.930229 TCGTGATCCTGGTTTATTCAACG 59.070 43.478 0.00 0.00 36.05 4.10
4108 4210 5.391629 GGTTCGTGATCCTGGTTTATTCAAC 60.392 44.000 0.00 0.00 34.18 3.18
4109 4211 4.698304 GGTTCGTGATCCTGGTTTATTCAA 59.302 41.667 0.00 0.00 0.00 2.69
4110 4212 4.258543 GGTTCGTGATCCTGGTTTATTCA 58.741 43.478 0.00 0.00 0.00 2.57
4111 4213 4.094442 GTGGTTCGTGATCCTGGTTTATTC 59.906 45.833 0.00 0.00 0.00 1.75
4112 4214 4.007659 GTGGTTCGTGATCCTGGTTTATT 58.992 43.478 0.00 0.00 0.00 1.40
4113 4215 3.606687 GTGGTTCGTGATCCTGGTTTAT 58.393 45.455 0.00 0.00 0.00 1.40
4114 4216 2.610976 CGTGGTTCGTGATCCTGGTTTA 60.611 50.000 0.00 0.00 34.52 2.01
4115 4217 1.876416 CGTGGTTCGTGATCCTGGTTT 60.876 52.381 0.00 0.00 34.52 3.27
4116 4218 0.320421 CGTGGTTCGTGATCCTGGTT 60.320 55.000 0.00 0.00 34.52 3.67
4117 4219 1.292223 CGTGGTTCGTGATCCTGGT 59.708 57.895 0.00 0.00 34.52 4.00
4118 4220 2.100631 GCGTGGTTCGTGATCCTGG 61.101 63.158 0.00 0.00 42.13 4.45
4119 4221 2.100631 GGCGTGGTTCGTGATCCTG 61.101 63.158 0.00 0.00 42.13 3.86
4120 4222 0.968901 TAGGCGTGGTTCGTGATCCT 60.969 55.000 0.00 0.00 42.13 3.24
4121 4223 0.804933 GTAGGCGTGGTTCGTGATCC 60.805 60.000 0.00 0.00 42.13 3.36
4122 4224 1.138047 CGTAGGCGTGGTTCGTGATC 61.138 60.000 0.00 0.00 42.13 2.92
4123 4225 1.153901 CGTAGGCGTGGTTCGTGAT 60.154 57.895 0.00 0.00 42.13 3.06
4124 4226 2.256158 CGTAGGCGTGGTTCGTGA 59.744 61.111 0.00 0.00 42.13 4.35
4125 4227 3.475774 GCGTAGGCGTGGTTCGTG 61.476 66.667 0.00 0.00 42.13 4.35
4136 4238 1.581954 CGCTGGATCTAGGCGTAGG 59.418 63.158 13.23 0.00 43.28 3.18
4141 4243 1.166129 TCGTATCGCTGGATCTAGGC 58.834 55.000 8.31 1.99 34.00 3.93
4142 4244 3.075148 TCTTCGTATCGCTGGATCTAGG 58.925 50.000 8.31 0.00 34.00 3.02
4143 4245 3.120130 GGTCTTCGTATCGCTGGATCTAG 60.120 52.174 0.86 0.86 34.00 2.43
4144 4246 2.812591 GGTCTTCGTATCGCTGGATCTA 59.187 50.000 0.00 0.00 34.00 1.98
4145 4247 1.609555 GGTCTTCGTATCGCTGGATCT 59.390 52.381 0.00 0.00 34.00 2.75
4146 4248 1.663445 CGGTCTTCGTATCGCTGGATC 60.663 57.143 0.00 0.00 34.00 3.36
4147 4249 0.311165 CGGTCTTCGTATCGCTGGAT 59.689 55.000 0.00 0.00 36.65 3.41
4148 4250 1.721664 CCGGTCTTCGTATCGCTGGA 61.722 60.000 0.00 0.00 37.11 3.86
4149 4251 1.299165 CCGGTCTTCGTATCGCTGG 60.299 63.158 0.00 0.00 37.11 4.85
4150 4252 1.944676 GCCGGTCTTCGTATCGCTG 60.945 63.158 1.90 0.00 37.11 5.18
4151 4253 2.412112 GCCGGTCTTCGTATCGCT 59.588 61.111 1.90 0.00 37.11 4.93
4152 4254 3.022914 CGCCGGTCTTCGTATCGC 61.023 66.667 1.90 0.00 37.11 4.58
4153 4255 3.022914 GCGCCGGTCTTCGTATCG 61.023 66.667 1.90 0.00 37.11 2.92
4154 4256 2.657620 GGCGCCGGTCTTCGTATC 60.658 66.667 12.58 0.00 37.11 2.24
4155 4257 4.217159 GGGCGCCGGTCTTCGTAT 62.217 66.667 22.54 0.00 37.11 3.06
4168 4270 4.326766 CAAGGCGTTGTGTGGGCG 62.327 66.667 10.97 0.00 0.00 6.13
4169 4271 4.645921 GCAAGGCGTTGTGTGGGC 62.646 66.667 19.45 1.25 35.92 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.