Multiple sequence alignment - TraesCS3A01G123700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G123700 chr3A 100.000 3791 0 0 1 3791 99997187 99993397 0.000000e+00 7001.0
1 TraesCS3A01G123700 chr3A 95.455 44 2 0 3400 3443 289989563 289989520 1.890000e-08 71.3
2 TraesCS3A01G123700 chr3D 91.650 2946 121 47 538 3400 83864250 83861347 0.000000e+00 3962.0
3 TraesCS3A01G123700 chr3D 93.080 448 18 4 4 446 83864817 83864378 0.000000e+00 643.0
4 TraesCS3A01G123700 chr3D 94.944 178 9 0 3614 3791 13161727 13161550 2.880000e-71 279.0
5 TraesCS3A01G123700 chr3D 90.566 53 5 0 3391 3443 151425232 151425284 1.890000e-08 71.3
6 TraesCS3A01G123700 chr3B 96.854 1367 31 5 608 1970 132655314 132656672 0.000000e+00 2276.0
7 TraesCS3A01G123700 chr3B 92.907 1156 46 14 1968 3095 132656700 132657847 0.000000e+00 1648.0
8 TraesCS3A01G123700 chr3B 94.183 447 17 3 1 446 132649018 132649456 0.000000e+00 673.0
9 TraesCS3A01G123700 chr3B 86.555 238 17 5 130 365 564029527 564029303 8.130000e-62 248.0
10 TraesCS3A01G123700 chr3B 78.457 311 45 11 3104 3400 132658022 132658324 2.330000e-42 183.0
11 TraesCS3A01G123700 chr3B 95.556 45 2 0 3561 3605 422191166 422191210 5.250000e-09 73.1
12 TraesCS3A01G123700 chr3B 93.617 47 3 0 3559 3605 33589892 33589938 1.890000e-08 71.3
13 TraesCS3A01G123700 chr2B 84.872 390 26 6 1348 1736 789616887 789617244 2.780000e-96 363.0
14 TraesCS3A01G123700 chr2B 86.555 238 17 5 130 365 155818725 155818501 8.130000e-62 248.0
15 TraesCS3A01G123700 chr2B 91.379 58 5 0 1870 1927 383057345 383057288 3.140000e-11 80.5
16 TraesCS3A01G123700 chr2B 92.593 54 4 0 1340 1393 461896105 461896052 1.130000e-10 78.7
17 TraesCS3A01G123700 chr2B 97.500 40 1 0 1366 1405 546902928 546902889 6.800000e-08 69.4
18 TraesCS3A01G123700 chr2A 95.480 177 8 0 3614 3790 7915767 7915591 2.230000e-72 283.0
19 TraesCS3A01G123700 chr2A 94.972 179 9 0 3613 3791 51641252 51641430 8.020000e-72 281.0
20 TraesCS3A01G123700 chr2A 84.810 237 22 5 130 365 154507032 154506809 3.810000e-55 226.0
21 TraesCS3A01G123700 chr2A 92.727 55 4 0 1870 1924 420226784 420226838 3.140000e-11 80.5
22 TraesCS3A01G123700 chr7D 94.944 178 9 0 3614 3791 548022386 548022563 2.880000e-71 279.0
23 TraesCS3A01G123700 chr7D 83.402 241 16 16 127 365 430381142 430380924 6.420000e-48 202.0
24 TraesCS3A01G123700 chr7D 90.769 65 6 0 1366 1430 573007659 573007595 1.880000e-13 87.9
25 TraesCS3A01G123700 chr7D 95.745 47 2 0 1344 1390 549768548 549768594 4.060000e-10 76.8
26 TraesCS3A01G123700 chr7B 94.944 178 9 0 3614 3791 652145143 652145320 2.880000e-71 279.0
27 TraesCS3A01G123700 chr7B 86.498 237 26 4 3560 3791 373060309 373060074 4.860000e-64 255.0
28 TraesCS3A01G123700 chr7B 100.000 39 0 0 3557 3595 379205612 379205650 5.250000e-09 73.1
29 TraesCS3A01G123700 chr7B 91.667 48 4 0 3396 3443 240312305 240312352 2.440000e-07 67.6
30 TraesCS3A01G123700 chr5A 94.944 178 9 0 3614 3791 146528217 146528394 2.880000e-71 279.0
31 TraesCS3A01G123700 chr1B 94.944 178 9 0 3614 3791 683992174 683991997 2.880000e-71 279.0
32 TraesCS3A01G123700 chr1B 93.333 45 3 0 3399 3443 678465697 678465741 2.440000e-07 67.6
33 TraesCS3A01G123700 chr4B 86.555 238 17 5 130 365 5823699 5823475 8.130000e-62 248.0
34 TraesCS3A01G123700 chrUn 86.134 238 18 5 130 365 232880029 232879805 3.780000e-60 243.0
35 TraesCS3A01G123700 chr7A 83.264 239 36 4 3553 3791 138979287 138979053 2.290000e-52 217.0
36 TraesCS3A01G123700 chr7A 91.489 47 4 0 3397 3443 54186509 54186555 8.790000e-07 65.8
37 TraesCS3A01G123700 chr6B 84.388 237 19 8 130 364 451460460 451460240 2.290000e-52 217.0
38 TraesCS3A01G123700 chr6B 91.803 61 5 0 1366 1426 534509682 534509622 6.750000e-13 86.1
39 TraesCS3A01G123700 chr6B 90.385 52 3 1 3394 3443 184352623 184352674 2.440000e-07 67.6
40 TraesCS3A01G123700 chr6B 80.822 73 10 3 3524 3595 716575390 716575321 2.000000e-03 54.7
41 TraesCS3A01G123700 chr4A 84.397 141 11 8 3469 3605 176810382 176810249 1.110000e-25 128.0
42 TraesCS3A01G123700 chr5D 89.231 65 7 0 1366 1430 448576646 448576710 8.730000e-12 82.4
43 TraesCS3A01G123700 chr5D 95.833 48 2 0 1869 1916 81149800 81149753 1.130000e-10 78.7
44 TraesCS3A01G123700 chr2D 90.000 60 4 2 3547 3605 636517270 636517212 4.060000e-10 76.8
45 TraesCS3A01G123700 chr2D 89.655 58 6 0 1870 1927 315115456 315115399 1.460000e-09 75.0
46 TraesCS3A01G123700 chr2D 90.741 54 4 1 3559 3611 485666745 485666798 1.890000e-08 71.3
47 TraesCS3A01G123700 chr1D 95.652 46 2 0 3398 3443 427703305 427703350 1.460000e-09 75.0
48 TraesCS3A01G123700 chr1D 95.652 46 2 0 3398 3443 487225297 487225252 1.460000e-09 75.0
49 TraesCS3A01G123700 chr1D 91.304 46 4 0 3398 3443 165199959 165199914 3.160000e-06 63.9
50 TraesCS3A01G123700 chr5B 82.716 81 14 0 1869 1949 89684213 89684133 5.250000e-09 73.1
51 TraesCS3A01G123700 chr6D 100.000 30 0 0 187 216 469270167 469270196 5.290000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G123700 chr3A 99993397 99997187 3790 True 7001.0 7001 100.000 1 3791 1 chr3A.!!$R1 3790
1 TraesCS3A01G123700 chr3D 83861347 83864817 3470 True 2302.5 3962 92.365 4 3400 2 chr3D.!!$R2 3396
2 TraesCS3A01G123700 chr3B 132655314 132658324 3010 False 1369.0 2276 89.406 608 3400 3 chr3B.!!$F4 2792

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
637 709 0.035056 ATCCTACTGCACCACCTTGC 60.035 55.0 0.0 0.0 43.31 4.01 F
1288 1374 0.250124 TGTGTGCTTACGTGGAAGGG 60.250 55.0 0.0 0.0 0.00 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1951 2041 1.862123 CATGTGGACGTCTGTGTGC 59.138 57.895 16.46 0.0 0.0 4.57 R
3281 3634 0.680921 ATCAGGCAAACATCCACCCG 60.681 55.000 0.00 0.0 0.0 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 0.833287 AGAGGATGGTGTGATTCCCG 59.167 55.000 0.00 0.00 0.00 5.14
175 176 5.221661 GGTTCTCTTTGGACTACTTTGAGGA 60.222 44.000 0.00 0.00 0.00 3.71
179 180 4.283722 TCTTTGGACTACTTTGAGGAGGTC 59.716 45.833 0.00 0.00 0.00 3.85
180 181 3.254093 TGGACTACTTTGAGGAGGTCA 57.746 47.619 0.00 0.00 0.00 4.02
181 182 2.897969 TGGACTACTTTGAGGAGGTCAC 59.102 50.000 0.00 0.00 33.71 3.67
182 183 2.234168 GGACTACTTTGAGGAGGTCACC 59.766 54.545 0.00 0.00 33.71 4.02
183 184 3.166679 GACTACTTTGAGGAGGTCACCT 58.833 50.000 0.00 0.00 43.64 4.00
184 185 3.579151 GACTACTTTGAGGAGGTCACCTT 59.421 47.826 0.00 0.00 40.73 3.50
185 186 4.748701 ACTACTTTGAGGAGGTCACCTTA 58.251 43.478 0.00 0.00 40.73 2.69
249 250 2.941415 GCTAACTTCCTGTGGGTGATGG 60.941 54.545 0.00 0.00 0.00 3.51
328 333 3.081061 TCCATGTGAAAAGATTGACCGG 58.919 45.455 0.00 0.00 0.00 5.28
341 346 2.319136 TGACCGGGGAAAATACATCG 57.681 50.000 6.32 0.00 0.00 3.84
347 353 1.404035 GGGGAAAATACATCGTGTGGC 59.596 52.381 1.58 0.00 0.00 5.01
423 429 3.619929 GGTTTCCAGATTTTCATGCATGC 59.380 43.478 22.25 11.82 0.00 4.06
425 431 4.746535 TTCCAGATTTTCATGCATGCAT 57.253 36.364 27.46 27.46 37.08 3.96
443 449 3.824443 TGCATGATGCCCAGAGATATTTG 59.176 43.478 15.70 0.00 44.23 2.32
468 489 5.940617 TGTATATGCTACTTTCAAGGGCAT 58.059 37.500 19.10 19.10 44.89 4.40
471 492 3.712016 TGCTACTTTCAAGGGCATACA 57.288 42.857 5.68 0.00 35.26 2.29
472 493 4.027674 TGCTACTTTCAAGGGCATACAA 57.972 40.909 5.68 0.00 35.26 2.41
477 498 7.996066 TGCTACTTTCAAGGGCATACAAATATA 59.004 33.333 5.68 0.00 35.26 0.86
478 499 8.290325 GCTACTTTCAAGGGCATACAAATATAC 58.710 37.037 0.00 0.00 0.00 1.47
479 500 7.582667 ACTTTCAAGGGCATACAAATATACC 57.417 36.000 0.00 0.00 0.00 2.73
480 501 6.549736 ACTTTCAAGGGCATACAAATATACCC 59.450 38.462 0.00 0.00 42.91 3.69
481 502 4.993028 TCAAGGGCATACAAATATACCCC 58.007 43.478 0.00 0.00 43.44 4.95
482 503 4.086457 CAAGGGCATACAAATATACCCCC 58.914 47.826 0.00 0.00 43.44 5.40
483 504 2.307686 AGGGCATACAAATATACCCCCG 59.692 50.000 0.00 0.00 43.44 5.73
484 505 2.089201 GGCATACAAATATACCCCCGC 58.911 52.381 0.00 0.00 0.00 6.13
485 506 2.553466 GGCATACAAATATACCCCCGCA 60.553 50.000 0.00 0.00 0.00 5.69
486 507 3.150767 GCATACAAATATACCCCCGCAA 58.849 45.455 0.00 0.00 0.00 4.85
487 508 3.570550 GCATACAAATATACCCCCGCAAA 59.429 43.478 0.00 0.00 0.00 3.68
488 509 4.038162 GCATACAAATATACCCCCGCAAAA 59.962 41.667 0.00 0.00 0.00 2.44
489 510 5.452077 GCATACAAATATACCCCCGCAAAAA 60.452 40.000 0.00 0.00 0.00 1.94
540 561 6.115446 CCAGCTAGGTTCATTTGATCTTACA 58.885 40.000 0.00 0.00 0.00 2.41
541 562 6.259608 CCAGCTAGGTTCATTTGATCTTACAG 59.740 42.308 0.00 0.00 0.00 2.74
543 564 6.820656 AGCTAGGTTCATTTGATCTTACAGTG 59.179 38.462 0.00 0.00 0.00 3.66
544 565 6.037610 GCTAGGTTCATTTGATCTTACAGTGG 59.962 42.308 0.00 0.00 0.00 4.00
546 567 6.176183 AGGTTCATTTGATCTTACAGTGGAG 58.824 40.000 0.00 0.00 0.00 3.86
561 633 0.679505 TGGAGAGACCAGAAACCACG 59.320 55.000 0.00 0.00 44.64 4.94
570 642 0.250727 CAGAAACCACGTGACCCCAT 60.251 55.000 19.30 0.00 0.00 4.00
579 651 0.390340 CGTGACCCCATCTGTGTCAG 60.390 60.000 0.00 0.00 39.50 3.51
581 653 0.473694 TGACCCCATCTGTGTCAGGT 60.474 55.000 0.00 0.00 34.28 4.00
596 668 2.345991 GGTGTGGTCGCCTTGCTA 59.654 61.111 0.00 0.00 40.73 3.49
597 669 1.741770 GGTGTGGTCGCCTTGCTAG 60.742 63.158 0.00 0.00 40.73 3.42
598 670 1.004918 GTGTGGTCGCCTTGCTAGT 60.005 57.895 0.00 0.00 0.00 2.57
599 671 0.602905 GTGTGGTCGCCTTGCTAGTT 60.603 55.000 0.00 0.00 0.00 2.24
600 672 0.602638 TGTGGTCGCCTTGCTAGTTG 60.603 55.000 0.00 0.00 0.00 3.16
601 673 1.671054 TGGTCGCCTTGCTAGTTGC 60.671 57.895 0.00 0.00 43.25 4.17
602 674 1.376037 GGTCGCCTTGCTAGTTGCT 60.376 57.895 0.00 0.00 43.37 3.91
603 675 0.108329 GGTCGCCTTGCTAGTTGCTA 60.108 55.000 0.00 0.00 43.37 3.49
604 676 1.000145 GTCGCCTTGCTAGTTGCTAC 59.000 55.000 0.00 0.00 43.37 3.58
605 677 0.457853 TCGCCTTGCTAGTTGCTACG 60.458 55.000 0.00 0.00 43.37 3.51
606 678 1.421410 CGCCTTGCTAGTTGCTACGG 61.421 60.000 0.00 0.00 43.37 4.02
637 709 0.035056 ATCCTACTGCACCACCTTGC 60.035 55.000 0.00 0.00 43.31 4.01
772 844 1.273606 CAGGTCTGGTGGTCTACAGTG 59.726 57.143 0.00 0.00 36.17 3.66
858 930 8.417884 CCTCTAAATCCGACTTTATTCTCTCTT 58.582 37.037 0.00 0.00 0.00 2.85
924 1004 1.150308 CCCCATCCACACACACACA 59.850 57.895 0.00 0.00 0.00 3.72
925 1005 1.172180 CCCCATCCACACACACACAC 61.172 60.000 0.00 0.00 0.00 3.82
926 1006 0.465278 CCCATCCACACACACACACA 60.465 55.000 0.00 0.00 0.00 3.72
927 1007 0.662619 CCATCCACACACACACACAC 59.337 55.000 0.00 0.00 0.00 3.82
928 1008 0.662619 CATCCACACACACACACACC 59.337 55.000 0.00 0.00 0.00 4.16
931 1011 1.077787 CACACACACACACACCCCT 60.078 57.895 0.00 0.00 0.00 4.79
1005 1091 1.603802 CACCACTTCACACACATGGAC 59.396 52.381 0.00 0.00 34.38 4.02
1038 1124 3.952967 CTGACCTAACCCTAGACTACACC 59.047 52.174 0.00 0.00 0.00 4.16
1288 1374 0.250124 TGTGTGCTTACGTGGAAGGG 60.250 55.000 0.00 0.00 0.00 3.95
1289 1375 0.250166 GTGTGCTTACGTGGAAGGGT 60.250 55.000 0.00 0.00 0.00 4.34
1317 1403 2.290093 GCTCTGCCTGACTGAATAATGC 59.710 50.000 0.00 0.00 0.00 3.56
1342 1432 2.203266 GGTGCAGCTATGGAGGCC 60.203 66.667 9.07 0.00 0.00 5.19
1426 1516 0.615331 TGGTGCTGGAGGAGTTCATC 59.385 55.000 0.00 0.00 0.00 2.92
1951 2041 3.272334 GGCGGCGCTCAAGGTATG 61.272 66.667 32.30 0.00 0.00 2.39
1983 2105 4.380339 CGTCCACATGCATCAAATTAACCA 60.380 41.667 0.00 0.00 0.00 3.67
1996 2118 6.913170 TCAAATTAACCAGCTGAATCTGAAC 58.087 36.000 17.39 0.00 36.19 3.18
2000 2122 2.417719 ACCAGCTGAATCTGAACGAAC 58.582 47.619 17.39 0.00 36.19 3.95
2004 2126 4.237724 CAGCTGAATCTGAACGAACTACA 58.762 43.478 8.42 0.00 36.19 2.74
2013 2135 4.278919 TCTGAACGAACTACATGTGTACCA 59.721 41.667 9.11 0.00 0.00 3.25
2025 2151 9.216117 ACTACATGTGTACCAAAGATTCTAAAC 57.784 33.333 9.11 0.00 0.00 2.01
2177 2303 4.208873 GCATCTTGCATTCTCTCTTCGTAG 59.791 45.833 0.00 0.00 44.26 3.51
2178 2304 5.347342 CATCTTGCATTCTCTCTTCGTAGT 58.653 41.667 0.00 0.00 0.00 2.73
2179 2305 6.499172 CATCTTGCATTCTCTCTTCGTAGTA 58.501 40.000 0.00 0.00 0.00 1.82
2189 2315 4.067896 TCTCTTCGTAGTACGTTCCAGTT 58.932 43.478 21.38 0.00 43.14 3.16
2210 2336 2.572191 TTATGCATGCTGCTGCTTTC 57.428 45.000 20.33 5.69 45.31 2.62
2218 2344 4.796290 GCATGCTGCTGCTTTCATTATGAT 60.796 41.667 17.00 0.00 40.96 2.45
2219 2345 4.301637 TGCTGCTGCTTTCATTATGATG 57.698 40.909 17.00 0.00 40.48 3.07
2220 2346 3.949113 TGCTGCTGCTTTCATTATGATGA 59.051 39.130 17.00 0.00 39.10 2.92
2276 2406 6.100279 ACATGAGACATGGGTGTGTATCTAAT 59.900 38.462 14.70 0.00 40.16 1.73
2279 2409 7.402054 TGAGACATGGGTGTGTATCTAATTTT 58.598 34.615 0.00 0.00 40.16 1.82
2280 2410 7.888021 TGAGACATGGGTGTGTATCTAATTTTT 59.112 33.333 0.00 0.00 40.16 1.94
2325 2460 2.663520 TACAGGTTGCACACGCGG 60.664 61.111 12.47 1.27 42.97 6.46
2623 2758 2.747686 CCTACAAGGTGCACCCGT 59.252 61.111 32.29 29.01 38.74 5.28
2628 2763 2.203294 AAGGTGCACCCGTTGTCC 60.203 61.111 32.29 4.74 38.74 4.02
2795 2930 6.144724 GCCGAGCAGATCAACTACTAATTAAG 59.855 42.308 0.00 0.00 0.00 1.85
2796 2931 7.203910 CCGAGCAGATCAACTACTAATTAAGT 58.796 38.462 0.00 0.00 42.62 2.24
2797 2932 8.350722 CCGAGCAGATCAACTACTAATTAAGTA 58.649 37.037 0.00 0.00 39.80 2.24
3102 3438 4.013267 ACACTTGTTGGAGGAAGAGATG 57.987 45.455 0.00 0.00 0.00 2.90
3117 3453 7.460071 AGGAAGAGATGATTATTTGGGAGATG 58.540 38.462 0.00 0.00 0.00 2.90
3121 3457 7.222872 AGAGATGATTATTTGGGAGATGTGTC 58.777 38.462 0.00 0.00 0.00 3.67
3126 3462 7.500992 TGATTATTTGGGAGATGTGTCTACTC 58.499 38.462 0.00 0.00 35.49 2.59
3138 3474 2.498078 GTGTCTACTCAGCTTTAGGGCT 59.502 50.000 0.00 0.00 44.10 5.19
3159 3495 1.202405 GGCAGTGTGTTTGTTCCTTGG 60.202 52.381 0.00 0.00 0.00 3.61
3163 3499 4.381079 GCAGTGTGTTTGTTCCTTGGTTTA 60.381 41.667 0.00 0.00 0.00 2.01
3166 3502 6.310224 CAGTGTGTTTGTTCCTTGGTTTAAAG 59.690 38.462 0.00 0.00 0.00 1.85
3167 3503 6.014925 AGTGTGTTTGTTCCTTGGTTTAAAGT 60.015 34.615 0.00 0.00 0.00 2.66
3197 3537 5.156355 GGTGTGAATTGTCAGTAAGCAATG 58.844 41.667 0.00 0.00 35.72 2.82
3207 3547 5.181748 GTCAGTAAGCAATGATGGAAGACT 58.818 41.667 0.00 0.00 0.00 3.24
3211 3551 7.496920 TCAGTAAGCAATGATGGAAGACTATTG 59.503 37.037 0.00 0.00 33.18 1.90
3212 3552 7.281774 CAGTAAGCAATGATGGAAGACTATTGT 59.718 37.037 0.00 0.00 32.75 2.71
3214 3554 6.446781 AGCAATGATGGAAGACTATTGTTG 57.553 37.500 0.00 0.00 32.75 3.33
3218 3558 7.066284 GCAATGATGGAAGACTATTGTTGTAGT 59.934 37.037 0.00 0.00 37.61 2.73
3220 3560 7.239763 TGATGGAAGACTATTGTTGTAGTGA 57.760 36.000 0.00 0.00 35.14 3.41
3221 3561 7.676004 TGATGGAAGACTATTGTTGTAGTGAA 58.324 34.615 0.00 0.00 35.14 3.18
3222 3562 8.321353 TGATGGAAGACTATTGTTGTAGTGAAT 58.679 33.333 0.00 0.00 35.14 2.57
3223 3563 9.817809 GATGGAAGACTATTGTTGTAGTGAATA 57.182 33.333 0.00 0.00 35.14 1.75
3233 3578 8.650143 ATTGTTGTAGTGAATAAATGGTTCCT 57.350 30.769 0.00 0.00 0.00 3.36
3238 3583 9.967451 TTGTAGTGAATAAATGGTTCCTGAATA 57.033 29.630 0.00 0.00 0.00 1.75
3239 3584 9.391006 TGTAGTGAATAAATGGTTCCTGAATAC 57.609 33.333 0.00 0.00 0.00 1.89
3244 3589 7.993183 TGAATAAATGGTTCCTGAATACCTCTC 59.007 37.037 0.00 0.00 35.41 3.20
3251 3596 6.214615 TGGTTCCTGAATACCTCTCATTTGTA 59.785 38.462 0.00 0.00 35.41 2.41
3254 3599 6.749139 TCCTGAATACCTCTCATTTGTATCG 58.251 40.000 0.00 0.00 0.00 2.92
3285 3638 2.274760 CCTCTCGGGTAGTCGGGT 59.725 66.667 0.00 0.00 31.63 5.28
3293 3646 0.616891 GGGTAGTCGGGTGGATGTTT 59.383 55.000 0.00 0.00 0.00 2.83
3303 3656 3.299503 GGGTGGATGTTTGCCTGATATT 58.700 45.455 0.00 0.00 0.00 1.28
3374 3730 9.146984 TGTACGAAAGTTTACAAAGATAGATGG 57.853 33.333 0.00 0.00 46.40 3.51
3383 3739 8.700644 GTTTACAAAGATAGATGGTATAGCACG 58.299 37.037 6.80 0.00 0.00 5.34
3390 3746 7.990917 AGATAGATGGTATAGCACGATAACTG 58.009 38.462 6.80 0.00 0.00 3.16
3400 3756 3.809832 AGCACGATAACTGGTTGCATATC 59.190 43.478 0.00 0.00 0.00 1.63
3401 3757 3.809832 GCACGATAACTGGTTGCATATCT 59.190 43.478 0.00 0.00 0.00 1.98
3402 3758 4.273480 GCACGATAACTGGTTGCATATCTT 59.727 41.667 0.00 0.00 0.00 2.40
3403 3759 5.220854 GCACGATAACTGGTTGCATATCTTT 60.221 40.000 0.00 0.00 0.00 2.52
3404 3760 6.422223 CACGATAACTGGTTGCATATCTTTC 58.578 40.000 0.00 0.00 0.00 2.62
3405 3761 5.527582 ACGATAACTGGTTGCATATCTTTCC 59.472 40.000 0.00 0.00 0.00 3.13
3406 3762 5.760253 CGATAACTGGTTGCATATCTTTCCT 59.240 40.000 0.00 0.00 0.00 3.36
3407 3763 6.929049 CGATAACTGGTTGCATATCTTTCCTA 59.071 38.462 0.00 0.00 0.00 2.94
3408 3764 7.095607 CGATAACTGGTTGCATATCTTTCCTAC 60.096 40.741 0.00 0.00 0.00 3.18
3409 3765 5.700402 ACTGGTTGCATATCTTTCCTACT 57.300 39.130 0.00 0.00 0.00 2.57
3410 3766 6.067217 ACTGGTTGCATATCTTTCCTACTT 57.933 37.500 0.00 0.00 0.00 2.24
3411 3767 6.116126 ACTGGTTGCATATCTTTCCTACTTC 58.884 40.000 0.00 0.00 0.00 3.01
3412 3768 6.069963 ACTGGTTGCATATCTTTCCTACTTCT 60.070 38.462 0.00 0.00 0.00 2.85
3413 3769 7.125811 ACTGGTTGCATATCTTTCCTACTTCTA 59.874 37.037 0.00 0.00 0.00 2.10
3414 3770 7.857456 TGGTTGCATATCTTTCCTACTTCTAA 58.143 34.615 0.00 0.00 0.00 2.10
3415 3771 8.325787 TGGTTGCATATCTTTCCTACTTCTAAA 58.674 33.333 0.00 0.00 0.00 1.85
3416 3772 8.831550 GGTTGCATATCTTTCCTACTTCTAAAG 58.168 37.037 0.00 0.00 0.00 1.85
3417 3773 9.384764 GTTGCATATCTTTCCTACTTCTAAAGT 57.615 33.333 0.00 0.00 45.40 2.66
3418 3774 9.959721 TTGCATATCTTTCCTACTTCTAAAGTT 57.040 29.630 0.00 0.00 42.81 2.66
3419 3775 9.959721 TGCATATCTTTCCTACTTCTAAAGTTT 57.040 29.630 0.00 0.00 42.81 2.66
3425 3781 9.901172 TCTTTCCTACTTCTAAAGTTTTGAGTT 57.099 29.630 0.00 0.00 42.81 3.01
3426 3782 9.937175 CTTTCCTACTTCTAAAGTTTTGAGTTG 57.063 33.333 0.00 0.11 42.81 3.16
3427 3783 8.446599 TTCCTACTTCTAAAGTTTTGAGTTGG 57.553 34.615 15.65 15.65 42.81 3.77
3428 3784 7.571025 TCCTACTTCTAAAGTTTTGAGTTGGT 58.429 34.615 18.24 11.79 42.81 3.67
3429 3785 8.707449 TCCTACTTCTAAAGTTTTGAGTTGGTA 58.293 33.333 18.24 12.09 42.81 3.25
3430 3786 8.989980 CCTACTTCTAAAGTTTTGAGTTGGTAG 58.010 37.037 14.61 15.04 42.81 3.18
3431 3787 9.543783 CTACTTCTAAAGTTTTGAGTTGGTAGT 57.456 33.333 0.00 0.00 42.81 2.73
3432 3788 8.434733 ACTTCTAAAGTTTTGAGTTGGTAGTC 57.565 34.615 0.00 0.00 39.04 2.59
3433 3789 8.044908 ACTTCTAAAGTTTTGAGTTGGTAGTCA 58.955 33.333 0.00 0.00 39.04 3.41
3434 3790 8.974060 TTCTAAAGTTTTGAGTTGGTAGTCAT 57.026 30.769 0.00 0.00 33.82 3.06
3435 3791 8.603242 TCTAAAGTTTTGAGTTGGTAGTCATC 57.397 34.615 0.00 0.00 33.82 2.92
3436 3792 6.635030 AAAGTTTTGAGTTGGTAGTCATCC 57.365 37.500 0.00 0.00 33.82 3.51
3437 3793 5.304686 AGTTTTGAGTTGGTAGTCATCCA 57.695 39.130 0.00 0.00 33.82 3.41
3438 3794 5.880901 AGTTTTGAGTTGGTAGTCATCCAT 58.119 37.500 0.00 0.00 33.82 3.41
3439 3795 6.306987 AGTTTTGAGTTGGTAGTCATCCATT 58.693 36.000 0.00 0.00 33.82 3.16
3440 3796 6.431234 AGTTTTGAGTTGGTAGTCATCCATTC 59.569 38.462 0.00 0.00 33.82 2.67
3441 3797 5.497464 TTGAGTTGGTAGTCATCCATTCA 57.503 39.130 0.00 0.00 33.82 2.57
3442 3798 4.832248 TGAGTTGGTAGTCATCCATTCAC 58.168 43.478 0.00 0.00 34.75 3.18
3443 3799 4.192317 GAGTTGGTAGTCATCCATTCACC 58.808 47.826 0.00 0.00 34.75 4.02
3444 3800 3.846588 AGTTGGTAGTCATCCATTCACCT 59.153 43.478 0.00 0.00 34.75 4.00
3445 3801 5.030147 AGTTGGTAGTCATCCATTCACCTA 58.970 41.667 0.00 0.00 34.75 3.08
3446 3802 5.667626 AGTTGGTAGTCATCCATTCACCTAT 59.332 40.000 0.00 0.00 34.75 2.57
3447 3803 5.551305 TGGTAGTCATCCATTCACCTATG 57.449 43.478 0.00 0.00 0.00 2.23
3448 3804 4.968719 TGGTAGTCATCCATTCACCTATGT 59.031 41.667 0.00 0.00 0.00 2.29
3449 3805 5.428457 TGGTAGTCATCCATTCACCTATGTT 59.572 40.000 0.00 0.00 0.00 2.71
3450 3806 6.613679 TGGTAGTCATCCATTCACCTATGTTA 59.386 38.462 0.00 0.00 0.00 2.41
3451 3807 7.126573 TGGTAGTCATCCATTCACCTATGTTAA 59.873 37.037 0.00 0.00 0.00 2.01
3452 3808 8.157476 GGTAGTCATCCATTCACCTATGTTAAT 58.843 37.037 0.00 0.00 0.00 1.40
3471 3827 8.983702 TGTTAATAGGGTTTCTAAACAGTGTT 57.016 30.769 1.64 1.64 40.63 3.32
3477 3833 7.706100 AGGGTTTCTAAACAGTGTTAAAACA 57.294 32.000 26.28 7.89 40.63 2.83
3478 3834 8.301252 AGGGTTTCTAAACAGTGTTAAAACAT 57.699 30.769 26.28 16.26 39.74 2.71
3479 3835 9.411189 AGGGTTTCTAAACAGTGTTAAAACATA 57.589 29.630 26.28 11.11 39.74 2.29
3541 3897 4.728534 TGTGTATGAAAACAAATAGGCGC 58.271 39.130 0.00 0.00 0.00 6.53
3542 3898 4.102649 GTGTATGAAAACAAATAGGCGCC 58.897 43.478 21.89 21.89 0.00 6.53
3543 3899 3.759086 TGTATGAAAACAAATAGGCGCCA 59.241 39.130 31.54 15.56 0.00 5.69
3544 3900 3.951775 ATGAAAACAAATAGGCGCCAA 57.048 38.095 31.54 0.00 0.00 4.52
3545 3901 3.019933 TGAAAACAAATAGGCGCCAAC 57.980 42.857 31.54 0.33 0.00 3.77
3546 3902 2.362397 TGAAAACAAATAGGCGCCAACA 59.638 40.909 31.54 14.08 0.00 3.33
3547 3903 2.432206 AAACAAATAGGCGCCAACAC 57.568 45.000 31.54 0.00 0.00 3.32
3548 3904 1.323412 AACAAATAGGCGCCAACACA 58.677 45.000 31.54 8.28 0.00 3.72
3549 3905 1.544724 ACAAATAGGCGCCAACACAT 58.455 45.000 31.54 9.39 0.00 3.21
3550 3906 2.717390 ACAAATAGGCGCCAACACATA 58.283 42.857 31.54 11.70 0.00 2.29
3551 3907 3.287222 ACAAATAGGCGCCAACACATAT 58.713 40.909 31.54 13.73 0.00 1.78
3552 3908 4.456535 ACAAATAGGCGCCAACACATATA 58.543 39.130 31.54 10.00 0.00 0.86
3553 3909 5.070001 ACAAATAGGCGCCAACACATATAT 58.930 37.500 31.54 12.12 0.00 0.86
3554 3910 5.534654 ACAAATAGGCGCCAACACATATATT 59.465 36.000 31.54 17.57 0.00 1.28
3555 3911 6.712998 ACAAATAGGCGCCAACACATATATTA 59.287 34.615 31.54 7.73 0.00 0.98
3556 3912 6.985188 AATAGGCGCCAACACATATATTAG 57.015 37.500 31.54 0.00 0.00 1.73
3557 3913 4.617253 AGGCGCCAACACATATATTAGA 57.383 40.909 31.54 0.00 0.00 2.10
3558 3914 4.968259 AGGCGCCAACACATATATTAGAA 58.032 39.130 31.54 0.00 0.00 2.10
3559 3915 5.373222 AGGCGCCAACACATATATTAGAAA 58.627 37.500 31.54 0.00 0.00 2.52
3560 3916 5.825679 AGGCGCCAACACATATATTAGAAAA 59.174 36.000 31.54 0.00 0.00 2.29
3561 3917 6.320164 AGGCGCCAACACATATATTAGAAAAA 59.680 34.615 31.54 0.00 0.00 1.94
3640 3996 8.909708 TTTTTGAACATCAGTAAAGACACAAG 57.090 30.769 0.00 0.00 0.00 3.16
3641 3997 5.673337 TGAACATCAGTAAAGACACAAGC 57.327 39.130 0.00 0.00 0.00 4.01
3642 3998 4.211164 TGAACATCAGTAAAGACACAAGCG 59.789 41.667 0.00 0.00 0.00 4.68
3643 3999 2.480419 ACATCAGTAAAGACACAAGCGC 59.520 45.455 0.00 0.00 0.00 5.92
3644 4000 2.526304 TCAGTAAAGACACAAGCGCT 57.474 45.000 2.64 2.64 0.00 5.92
3645 4001 2.404215 TCAGTAAAGACACAAGCGCTC 58.596 47.619 12.06 0.00 0.00 5.03
3646 4002 2.135139 CAGTAAAGACACAAGCGCTCA 58.865 47.619 12.06 0.00 0.00 4.26
3647 4003 2.738846 CAGTAAAGACACAAGCGCTCAT 59.261 45.455 12.06 0.00 0.00 2.90
3648 4004 3.926527 CAGTAAAGACACAAGCGCTCATA 59.073 43.478 12.06 0.00 0.00 2.15
3649 4005 3.927142 AGTAAAGACACAAGCGCTCATAC 59.073 43.478 12.06 5.97 0.00 2.39
3650 4006 2.455674 AAGACACAAGCGCTCATACA 57.544 45.000 12.06 0.00 0.00 2.29
3651 4007 1.714794 AGACACAAGCGCTCATACAC 58.285 50.000 12.06 1.00 0.00 2.90
3652 4008 1.000843 AGACACAAGCGCTCATACACA 59.999 47.619 12.06 0.00 0.00 3.72
3653 4009 1.126846 GACACAAGCGCTCATACACAC 59.873 52.381 12.06 0.00 0.00 3.82
3654 4010 0.093535 CACAAGCGCTCATACACACG 59.906 55.000 12.06 0.00 0.00 4.49
3658 4014 3.178592 CGCTCATACACACGCGCA 61.179 61.111 5.73 0.00 39.11 6.09
3659 4015 2.516589 CGCTCATACACACGCGCAT 61.517 57.895 5.73 0.00 39.11 4.73
3660 4016 1.206115 CGCTCATACACACGCGCATA 61.206 55.000 5.73 0.00 39.11 3.14
3661 4017 0.229753 GCTCATACACACGCGCATAC 59.770 55.000 5.73 0.00 0.00 2.39
3662 4018 1.555477 CTCATACACACGCGCATACA 58.445 50.000 5.73 0.00 0.00 2.29
3663 4019 1.255342 CTCATACACACGCGCATACAC 59.745 52.381 5.73 0.00 0.00 2.90
3664 4020 1.135228 TCATACACACGCGCATACACT 60.135 47.619 5.73 0.00 0.00 3.55
3665 4021 1.255342 CATACACACGCGCATACACTC 59.745 52.381 5.73 0.00 0.00 3.51
3666 4022 0.241481 TACACACGCGCATACACTCA 59.759 50.000 5.73 0.00 0.00 3.41
3667 4023 1.282248 ACACACGCGCATACACTCAC 61.282 55.000 5.73 0.00 0.00 3.51
3668 4024 1.736645 ACACGCGCATACACTCACC 60.737 57.895 5.73 0.00 0.00 4.02
3669 4025 2.125673 ACGCGCATACACTCACCC 60.126 61.111 5.73 0.00 0.00 4.61
3670 4026 2.125713 CGCGCATACACTCACCCA 60.126 61.111 8.75 0.00 0.00 4.51
3671 4027 1.521457 CGCGCATACACTCACCCAT 60.521 57.895 8.75 0.00 0.00 4.00
3672 4028 0.249280 CGCGCATACACTCACCCATA 60.249 55.000 8.75 0.00 0.00 2.74
3673 4029 1.605457 CGCGCATACACTCACCCATAT 60.605 52.381 8.75 0.00 0.00 1.78
3674 4030 1.800586 GCGCATACACTCACCCATATG 59.199 52.381 0.30 0.00 0.00 1.78
3675 4031 2.547855 GCGCATACACTCACCCATATGA 60.548 50.000 0.30 0.00 0.00 2.15
3676 4032 3.727726 CGCATACACTCACCCATATGAA 58.272 45.455 3.65 0.00 0.00 2.57
3677 4033 3.494626 CGCATACACTCACCCATATGAAC 59.505 47.826 3.65 0.00 0.00 3.18
3678 4034 3.494626 GCATACACTCACCCATATGAACG 59.505 47.826 3.65 0.00 0.00 3.95
3679 4035 2.024176 ACACTCACCCATATGAACGC 57.976 50.000 3.65 0.00 0.00 4.84
3680 4036 1.277842 ACACTCACCCATATGAACGCA 59.722 47.619 3.65 0.00 0.00 5.24
3681 4037 1.665679 CACTCACCCATATGAACGCAC 59.334 52.381 3.65 0.00 0.00 5.34
3682 4038 1.277842 ACTCACCCATATGAACGCACA 59.722 47.619 3.65 0.00 0.00 4.57
3683 4039 1.665679 CTCACCCATATGAACGCACAC 59.334 52.381 3.65 0.00 0.00 3.82
3684 4040 1.002544 TCACCCATATGAACGCACACA 59.997 47.619 3.65 0.00 0.00 3.72
3685 4041 1.130373 CACCCATATGAACGCACACAC 59.870 52.381 3.65 0.00 0.00 3.82
3686 4042 0.373370 CCCATATGAACGCACACACG 59.627 55.000 3.65 0.00 39.50 4.49
3687 4043 0.247655 CCATATGAACGCACACACGC 60.248 55.000 3.65 0.00 36.19 5.34
3688 4044 0.441921 CATATGAACGCACACACGCA 59.558 50.000 0.00 0.00 36.19 5.24
3689 4045 0.442310 ATATGAACGCACACACGCAC 59.558 50.000 0.00 0.00 36.19 5.34
3690 4046 0.876342 TATGAACGCACACACGCACA 60.876 50.000 0.00 0.00 36.19 4.57
3691 4047 2.350760 GAACGCACACACGCACAC 60.351 61.111 0.00 0.00 36.19 3.82
3692 4048 3.783588 GAACGCACACACGCACACC 62.784 63.158 0.00 0.00 36.19 4.16
3695 4051 2.280524 GCACACACGCACACCCTA 60.281 61.111 0.00 0.00 0.00 3.53
3696 4052 2.604174 GCACACACGCACACCCTAC 61.604 63.158 0.00 0.00 0.00 3.18
3697 4053 1.959226 CACACACGCACACCCTACC 60.959 63.158 0.00 0.00 0.00 3.18
3698 4054 2.358247 CACACGCACACCCTACCC 60.358 66.667 0.00 0.00 0.00 3.69
3699 4055 3.633116 ACACGCACACCCTACCCC 61.633 66.667 0.00 0.00 0.00 4.95
3700 4056 3.319198 CACGCACACCCTACCCCT 61.319 66.667 0.00 0.00 0.00 4.79
3701 4057 1.985662 CACGCACACCCTACCCCTA 60.986 63.158 0.00 0.00 0.00 3.53
3702 4058 1.986210 ACGCACACCCTACCCCTAC 60.986 63.158 0.00 0.00 0.00 3.18
3703 4059 2.897972 GCACACCCTACCCCTACG 59.102 66.667 0.00 0.00 0.00 3.51
3704 4060 1.683365 GCACACCCTACCCCTACGA 60.683 63.158 0.00 0.00 0.00 3.43
3705 4061 1.673808 GCACACCCTACCCCTACGAG 61.674 65.000 0.00 0.00 0.00 4.18
3706 4062 1.380920 ACACCCTACCCCTACGAGC 60.381 63.158 0.00 0.00 0.00 5.03
3707 4063 1.380785 CACCCTACCCCTACGAGCA 60.381 63.158 0.00 0.00 0.00 4.26
3708 4064 1.380920 ACCCTACCCCTACGAGCAC 60.381 63.158 0.00 0.00 0.00 4.40
3709 4065 2.132352 CCCTACCCCTACGAGCACC 61.132 68.421 0.00 0.00 0.00 5.01
3710 4066 1.076192 CCTACCCCTACGAGCACCT 60.076 63.158 0.00 0.00 0.00 4.00
3711 4067 1.108132 CCTACCCCTACGAGCACCTC 61.108 65.000 0.00 0.00 0.00 3.85
3712 4068 1.076485 TACCCCTACGAGCACCTCC 60.076 63.158 0.00 0.00 0.00 4.30
3713 4069 2.898920 TACCCCTACGAGCACCTCCG 62.899 65.000 0.00 0.00 0.00 4.63
3714 4070 2.439701 CCCTACGAGCACCTCCGA 60.440 66.667 0.00 0.00 0.00 4.55
3715 4071 2.050350 CCCTACGAGCACCTCCGAA 61.050 63.158 0.00 0.00 0.00 4.30
3716 4072 1.601419 CCCTACGAGCACCTCCGAAA 61.601 60.000 0.00 0.00 0.00 3.46
3717 4073 0.179134 CCTACGAGCACCTCCGAAAG 60.179 60.000 0.00 0.00 0.00 2.62
3718 4074 0.809385 CTACGAGCACCTCCGAAAGA 59.191 55.000 0.00 0.00 0.00 2.52
3719 4075 0.524862 TACGAGCACCTCCGAAAGAC 59.475 55.000 0.00 0.00 0.00 3.01
3720 4076 1.179814 ACGAGCACCTCCGAAAGACT 61.180 55.000 0.00 0.00 0.00 3.24
3721 4077 0.734253 CGAGCACCTCCGAAAGACTG 60.734 60.000 0.00 0.00 0.00 3.51
3722 4078 0.603569 GAGCACCTCCGAAAGACTGA 59.396 55.000 0.00 0.00 0.00 3.41
3723 4079 0.605589 AGCACCTCCGAAAGACTGAG 59.394 55.000 0.00 0.00 0.00 3.35
3724 4080 1.016653 GCACCTCCGAAAGACTGAGC 61.017 60.000 0.00 0.00 0.00 4.26
3725 4081 0.390472 CACCTCCGAAAGACTGAGCC 60.390 60.000 0.00 0.00 0.00 4.70
3726 4082 1.153745 CCTCCGAAAGACTGAGCCG 60.154 63.158 0.00 0.00 0.00 5.52
3727 4083 1.153745 CTCCGAAAGACTGAGCCGG 60.154 63.158 0.00 0.00 41.36 6.13
3728 4084 1.878656 CTCCGAAAGACTGAGCCGGT 61.879 60.000 1.90 0.00 40.87 5.28
3729 4085 0.609957 TCCGAAAGACTGAGCCGGTA 60.610 55.000 1.90 0.00 40.87 4.02
3730 4086 0.460311 CCGAAAGACTGAGCCGGTAT 59.540 55.000 1.90 0.00 35.83 2.73
3731 4087 1.679680 CCGAAAGACTGAGCCGGTATA 59.320 52.381 1.90 0.00 35.83 1.47
3732 4088 2.296471 CCGAAAGACTGAGCCGGTATAT 59.704 50.000 1.90 0.00 35.83 0.86
3733 4089 3.566523 CGAAAGACTGAGCCGGTATATC 58.433 50.000 1.90 0.00 0.00 1.63
3734 4090 3.004419 CGAAAGACTGAGCCGGTATATCA 59.996 47.826 1.90 1.83 0.00 2.15
3735 4091 4.321304 CGAAAGACTGAGCCGGTATATCAT 60.321 45.833 1.90 0.00 0.00 2.45
3736 4092 4.792521 AAGACTGAGCCGGTATATCATC 57.207 45.455 1.90 3.56 0.00 2.92
3737 4093 4.040936 AGACTGAGCCGGTATATCATCT 57.959 45.455 1.90 5.54 0.00 2.90
3738 4094 4.411927 AGACTGAGCCGGTATATCATCTT 58.588 43.478 1.90 0.00 0.00 2.40
3739 4095 5.571285 AGACTGAGCCGGTATATCATCTTA 58.429 41.667 1.90 0.00 0.00 2.10
3740 4096 6.010850 AGACTGAGCCGGTATATCATCTTAA 58.989 40.000 1.90 0.00 0.00 1.85
3741 4097 6.493802 AGACTGAGCCGGTATATCATCTTAAA 59.506 38.462 1.90 0.00 0.00 1.52
3742 4098 7.015292 AGACTGAGCCGGTATATCATCTTAAAA 59.985 37.037 1.90 0.00 0.00 1.52
3743 4099 7.680730 ACTGAGCCGGTATATCATCTTAAAAT 58.319 34.615 1.90 0.00 0.00 1.82
3744 4100 8.157476 ACTGAGCCGGTATATCATCTTAAAATT 58.843 33.333 1.90 0.00 0.00 1.82
3745 4101 8.918202 TGAGCCGGTATATCATCTTAAAATTT 57.082 30.769 1.90 0.00 0.00 1.82
3748 4104 8.932791 AGCCGGTATATCATCTTAAAATTTACG 58.067 33.333 1.90 0.00 0.00 3.18
3749 4105 8.928733 GCCGGTATATCATCTTAAAATTTACGA 58.071 33.333 1.90 0.00 0.00 3.43
3757 4113 7.735500 TCATCTTAAAATTTACGAAGTCACCG 58.264 34.615 0.00 0.00 43.93 4.94
3758 4114 7.385752 TCATCTTAAAATTTACGAAGTCACCGT 59.614 33.333 0.00 0.00 43.93 4.83
3759 4115 8.649841 CATCTTAAAATTTACGAAGTCACCGTA 58.350 33.333 0.00 0.00 43.93 4.02
3760 4116 8.231304 TCTTAAAATTTACGAAGTCACCGTAG 57.769 34.615 0.00 0.00 43.93 3.51
3772 4128 3.207354 CCGTAGGCACCTCATCGT 58.793 61.111 0.00 0.00 46.14 3.73
3773 4129 1.065928 CCGTAGGCACCTCATCGTC 59.934 63.158 0.00 0.00 46.14 4.20
3774 4130 1.298413 CGTAGGCACCTCATCGTCG 60.298 63.158 0.00 0.00 0.00 5.12
3775 4131 1.712018 CGTAGGCACCTCATCGTCGA 61.712 60.000 0.00 0.00 0.00 4.20
3776 4132 0.248539 GTAGGCACCTCATCGTCGAC 60.249 60.000 5.18 5.18 0.00 4.20
3777 4133 1.712018 TAGGCACCTCATCGTCGACG 61.712 60.000 31.30 31.30 41.45 5.12
3778 4134 2.579787 GCACCTCATCGTCGACGG 60.580 66.667 35.05 21.47 40.29 4.79
3779 4135 2.102357 CACCTCATCGTCGACGGG 59.898 66.667 35.05 28.87 40.29 5.28
3780 4136 2.045634 ACCTCATCGTCGACGGGA 60.046 61.111 35.05 28.98 40.29 5.14
3781 4137 1.676635 ACCTCATCGTCGACGGGAA 60.677 57.895 35.05 18.80 40.29 3.97
3782 4138 1.226603 CCTCATCGTCGACGGGAAC 60.227 63.158 35.05 0.00 40.29 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.211457 GGAATCACACCATCCTCTGCT 59.789 52.381 0.00 0.00 0.00 4.24
1 2 1.673168 GGAATCACACCATCCTCTGC 58.327 55.000 0.00 0.00 0.00 4.26
2 3 1.473965 CGGGAATCACACCATCCTCTG 60.474 57.143 0.00 0.00 33.61 3.35
22 23 2.503895 TATACCTAGCTAGCCGGGAC 57.496 55.000 24.60 0.00 0.00 4.46
135 136 2.439507 AGAACCTTGCAAGTCCAAGAGA 59.560 45.455 24.35 0.00 43.79 3.10
136 137 2.810852 GAGAACCTTGCAAGTCCAAGAG 59.189 50.000 24.35 10.07 43.79 2.85
175 176 6.449830 AGAATTAAAGGTGTAAGGTGACCT 57.550 37.500 0.00 0.00 44.94 3.85
179 180 9.981114 ATTCAAAAGAATTAAAGGTGTAAGGTG 57.019 29.630 0.00 0.00 0.00 4.00
184 185 9.581289 TCCTGATTCAAAAGAATTAAAGGTGTA 57.419 29.630 11.75 0.00 0.00 2.90
185 186 8.477419 TCCTGATTCAAAAGAATTAAAGGTGT 57.523 30.769 11.75 0.00 0.00 4.16
249 250 1.828979 TTTACGGCAGGGAATCAACC 58.171 50.000 0.00 0.00 0.00 3.77
291 296 3.579586 ACATGGATGCCTCATTTTTGTGT 59.420 39.130 0.00 0.00 0.00 3.72
328 333 2.844122 GCCACACGATGTATTTTCCC 57.156 50.000 0.00 0.00 0.00 3.97
341 346 4.722700 ACCCATCCAGCGCCACAC 62.723 66.667 2.29 0.00 0.00 3.82
423 429 5.710567 ACATCAAATATCTCTGGGCATCATG 59.289 40.000 0.00 0.00 0.00 3.07
425 431 5.314718 ACATCAAATATCTCTGGGCATCA 57.685 39.130 0.00 0.00 0.00 3.07
430 436 9.539825 GTAGCATATACATCAAATATCTCTGGG 57.460 37.037 0.00 0.00 0.00 4.45
443 449 5.997746 TGCCCTTGAAAGTAGCATATACATC 59.002 40.000 1.96 0.00 31.11 3.06
517 538 6.820656 ACTGTAAGATCAAATGAACCTAGCTG 59.179 38.462 0.00 0.00 37.43 4.24
538 559 1.694696 GGTTTCTGGTCTCTCCACTGT 59.305 52.381 0.00 0.00 41.93 3.55
540 561 1.694696 GTGGTTTCTGGTCTCTCCACT 59.305 52.381 0.00 0.00 41.93 4.00
541 562 1.605712 CGTGGTTTCTGGTCTCTCCAC 60.606 57.143 0.00 0.00 41.93 4.02
543 564 0.680061 ACGTGGTTTCTGGTCTCTCC 59.320 55.000 0.00 0.00 0.00 3.71
544 565 1.340248 TCACGTGGTTTCTGGTCTCTC 59.660 52.381 17.00 0.00 0.00 3.20
546 567 1.499049 GTCACGTGGTTTCTGGTCTC 58.501 55.000 17.00 0.00 0.00 3.36
561 633 0.036010 CCTGACACAGATGGGGTCAC 60.036 60.000 0.00 0.00 36.69 3.67
570 642 1.739667 CGACCACACCTGACACAGA 59.260 57.895 0.00 0.00 32.44 3.41
579 651 1.741770 CTAGCAAGGCGACCACACC 60.742 63.158 0.00 0.00 0.00 4.16
581 653 0.602638 CAACTAGCAAGGCGACCACA 60.603 55.000 0.00 0.00 0.00 4.17
600 672 1.065251 GATATAGCCGTAGCCCGTAGC 59.935 57.143 0.00 0.00 41.25 3.58
601 673 1.674962 GGATATAGCCGTAGCCCGTAG 59.325 57.143 0.00 0.00 41.25 3.51
602 674 1.283029 AGGATATAGCCGTAGCCCGTA 59.717 52.381 0.33 0.00 41.25 4.02
603 675 0.039326 AGGATATAGCCGTAGCCCGT 59.961 55.000 0.33 0.00 41.25 5.28
604 676 1.674962 GTAGGATATAGCCGTAGCCCG 59.325 57.143 0.33 0.00 41.25 6.13
605 677 2.688958 CAGTAGGATATAGCCGTAGCCC 59.311 54.545 0.33 0.00 41.25 5.19
606 678 2.099427 GCAGTAGGATATAGCCGTAGCC 59.901 54.545 0.33 0.00 41.25 3.93
637 709 3.057969 TGCAGGAGGTTTCATGTACTG 57.942 47.619 0.00 0.00 37.43 2.74
667 739 2.953284 AGCTAATCCTCTGCATGCAT 57.047 45.000 22.97 7.74 0.00 3.96
668 740 2.723322 AAGCTAATCCTCTGCATGCA 57.277 45.000 21.29 21.29 0.00 3.96
772 844 6.371548 TGTGTGTTTGATACTTTGATCTAGGC 59.628 38.462 0.00 0.00 0.00 3.93
858 930 0.121197 AGGGTGATTTCTGGGAGGGA 59.879 55.000 0.00 0.00 0.00 4.20
924 1004 3.392616 CCTGCTTAGATATCAAGGGGTGT 59.607 47.826 5.32 0.00 0.00 4.16
925 1005 3.648067 TCCTGCTTAGATATCAAGGGGTG 59.352 47.826 5.32 0.00 0.00 4.61
926 1006 3.906846 CTCCTGCTTAGATATCAAGGGGT 59.093 47.826 5.32 0.00 0.00 4.95
927 1007 3.906846 ACTCCTGCTTAGATATCAAGGGG 59.093 47.826 5.32 6.18 0.00 4.79
928 1008 6.672266 TTACTCCTGCTTAGATATCAAGGG 57.328 41.667 5.32 5.09 0.00 3.95
1005 1091 1.030488 TTAGGTCAGACGGCGAGGAG 61.030 60.000 16.62 0.00 0.00 3.69
1070 1156 4.530857 CCTGCTTCGGGTAGCCGG 62.531 72.222 31.34 18.27 40.49 6.13
1288 1374 0.461693 GTCAGGCAGAGCTCCATCAC 60.462 60.000 10.93 0.00 0.00 3.06
1289 1375 0.616964 AGTCAGGCAGAGCTCCATCA 60.617 55.000 10.93 0.00 0.00 3.07
1317 1403 0.736636 CATAGCTGCACCCACACATG 59.263 55.000 1.02 0.00 0.00 3.21
1342 1432 1.153409 CTCCAGCTGCTGCCTGTAG 60.153 63.158 23.86 9.40 40.80 2.74
1951 2041 1.862123 CATGTGGACGTCTGTGTGC 59.138 57.895 16.46 0.00 0.00 4.57
1983 2105 4.521130 TGTAGTTCGTTCAGATTCAGCT 57.479 40.909 0.00 0.00 0.00 4.24
1996 2118 6.590292 AGAATCTTTGGTACACATGTAGTTCG 59.410 38.462 0.00 0.00 39.29 3.95
2000 2122 8.665685 GGTTTAGAATCTTTGGTACACATGTAG 58.334 37.037 0.00 0.00 39.29 2.74
2004 2126 6.884836 GGAGGTTTAGAATCTTTGGTACACAT 59.115 38.462 0.00 0.00 39.29 3.21
2013 2135 7.898014 ACAACAAAGGAGGTTTAGAATCTTT 57.102 32.000 0.00 0.00 0.00 2.52
2025 2151 4.874966 TCAATTTGCAAACAACAAAGGAGG 59.125 37.500 15.41 0.00 40.14 4.30
2083 2209 3.217626 GGTCAATCCATCCACCTTCATC 58.782 50.000 0.00 0.00 35.97 2.92
2177 2303 5.236478 AGCATGCATAATAACTGGAACGTAC 59.764 40.000 21.98 0.00 0.00 3.67
2178 2304 5.236263 CAGCATGCATAATAACTGGAACGTA 59.764 40.000 21.98 0.00 0.00 3.57
2179 2305 4.035558 CAGCATGCATAATAACTGGAACGT 59.964 41.667 21.98 0.00 0.00 3.99
2276 2406 7.173863 TCGCAACACAAACAAAAACTAAAAA 57.826 28.000 0.00 0.00 0.00 1.94
2279 2409 4.324936 GCTCGCAACACAAACAAAAACTAA 59.675 37.500 0.00 0.00 0.00 2.24
2280 2410 3.854809 GCTCGCAACACAAACAAAAACTA 59.145 39.130 0.00 0.00 0.00 2.24
2481 2616 2.675423 TACTCCTGCGCCGACACT 60.675 61.111 4.18 0.00 0.00 3.55
2623 2758 4.329545 GGACCCTGCTGCGGACAA 62.330 66.667 10.70 0.00 0.00 3.18
2700 2835 3.347590 TCCTCGCCCTCCTCCTCA 61.348 66.667 0.00 0.00 0.00 3.86
2809 2955 7.681679 ACTTCTTAATTAGGGGCTAGCTAATC 58.318 38.462 15.72 0.00 0.00 1.75
2812 2958 6.183361 CCAACTTCTTAATTAGGGGCTAGCTA 60.183 42.308 15.72 0.00 0.00 3.32
2815 2961 6.002653 ACCAACTTCTTAATTAGGGGCTAG 57.997 41.667 0.00 0.00 0.00 3.42
3007 3172 3.604582 CACAAAAACAAAGCCCCAAAGA 58.395 40.909 0.00 0.00 0.00 2.52
3012 3179 2.754472 CTAGCACAAAAACAAAGCCCC 58.246 47.619 0.00 0.00 0.00 5.80
3102 3438 7.500992 TGAGTAGACACATCTCCCAAATAATC 58.499 38.462 0.00 0.00 36.29 1.75
3117 3453 2.498078 AGCCCTAAAGCTGAGTAGACAC 59.502 50.000 0.00 0.00 42.95 3.67
3138 3474 1.476085 CAAGGAACAAACACACTGCCA 59.524 47.619 0.00 0.00 0.00 4.92
3139 3475 1.202405 CCAAGGAACAAACACACTGCC 60.202 52.381 0.00 0.00 0.00 4.85
3140 3476 1.476488 ACCAAGGAACAAACACACTGC 59.524 47.619 0.00 0.00 0.00 4.40
3141 3477 3.866883 AACCAAGGAACAAACACACTG 57.133 42.857 0.00 0.00 0.00 3.66
3142 3478 5.986501 TTAAACCAAGGAACAAACACACT 57.013 34.783 0.00 0.00 0.00 3.55
3143 3479 6.160684 ACTTTAAACCAAGGAACAAACACAC 58.839 36.000 0.00 0.00 0.00 3.82
3159 3495 8.862074 ACAATTCACACCGTTTAAACTTTAAAC 58.138 29.630 20.49 20.49 34.91 2.01
3163 3499 6.622549 TGACAATTCACACCGTTTAAACTTT 58.377 32.000 16.01 0.03 0.00 2.66
3166 3502 5.575019 ACTGACAATTCACACCGTTTAAAC 58.425 37.500 8.35 8.35 0.00 2.01
3167 3503 5.821516 ACTGACAATTCACACCGTTTAAA 57.178 34.783 0.00 0.00 0.00 1.52
3197 3537 8.723942 ATTCACTACAACAATAGTCTTCCATC 57.276 34.615 0.00 0.00 32.92 3.51
3207 3547 9.747898 AGGAACCATTTATTCACTACAACAATA 57.252 29.630 0.00 0.00 0.00 1.90
3211 3551 7.681939 TCAGGAACCATTTATTCACTACAAC 57.318 36.000 0.00 0.00 0.00 3.32
3212 3552 8.877864 ATTCAGGAACCATTTATTCACTACAA 57.122 30.769 0.00 0.00 0.00 2.41
3214 3554 8.837389 GGTATTCAGGAACCATTTATTCACTAC 58.163 37.037 0.00 0.00 35.73 2.73
3218 3558 7.872138 AGAGGTATTCAGGAACCATTTATTCA 58.128 34.615 0.00 0.00 38.30 2.57
3220 3560 7.872138 TGAGAGGTATTCAGGAACCATTTATT 58.128 34.615 0.00 0.00 38.30 1.40
3221 3561 7.451731 TGAGAGGTATTCAGGAACCATTTAT 57.548 36.000 0.00 0.00 38.30 1.40
3222 3562 6.884472 TGAGAGGTATTCAGGAACCATTTA 57.116 37.500 0.00 0.00 38.30 1.40
3223 3563 5.779241 TGAGAGGTATTCAGGAACCATTT 57.221 39.130 0.00 0.00 38.30 2.32
3224 3564 5.983333 ATGAGAGGTATTCAGGAACCATT 57.017 39.130 0.00 0.00 38.30 3.16
3228 3573 7.169982 CGATACAAATGAGAGGTATTCAGGAAC 59.830 40.741 0.00 0.00 0.00 3.62
3233 3578 7.924412 GGTTACGATACAAATGAGAGGTATTCA 59.076 37.037 0.00 0.00 0.00 2.57
3238 3583 5.187186 ACAGGTTACGATACAAATGAGAGGT 59.813 40.000 0.00 0.00 0.00 3.85
3239 3584 5.661458 ACAGGTTACGATACAAATGAGAGG 58.339 41.667 0.00 0.00 0.00 3.69
3244 3589 7.548075 AGGTAAAGACAGGTTACGATACAAATG 59.452 37.037 0.00 0.00 33.13 2.32
3251 3596 4.096081 CGAGAGGTAAAGACAGGTTACGAT 59.904 45.833 0.00 0.00 33.13 3.73
3278 3631 1.303317 GGCAAACATCCACCCGACT 60.303 57.895 0.00 0.00 0.00 4.18
3279 3632 1.303317 AGGCAAACATCCACCCGAC 60.303 57.895 0.00 0.00 0.00 4.79
3280 3633 1.303236 CAGGCAAACATCCACCCGA 60.303 57.895 0.00 0.00 0.00 5.14
3281 3634 0.680921 ATCAGGCAAACATCCACCCG 60.681 55.000 0.00 0.00 0.00 5.28
3282 3635 2.435372 TATCAGGCAAACATCCACCC 57.565 50.000 0.00 0.00 0.00 4.61
3283 3636 3.953612 TGAATATCAGGCAAACATCCACC 59.046 43.478 0.00 0.00 0.00 4.61
3284 3637 5.581126 TTGAATATCAGGCAAACATCCAC 57.419 39.130 0.00 0.00 0.00 4.02
3285 3638 5.716228 ACTTTGAATATCAGGCAAACATCCA 59.284 36.000 0.00 0.00 0.00 3.41
3293 3646 6.189859 AGGAATTCACTTTGAATATCAGGCA 58.810 36.000 7.93 0.00 45.57 4.75
3374 3730 4.116961 TGCAACCAGTTATCGTGCTATAC 58.883 43.478 0.00 0.00 0.00 1.47
3379 3735 3.809832 AGATATGCAACCAGTTATCGTGC 59.190 43.478 0.00 0.00 0.00 5.34
3383 3739 7.934120 AGTAGGAAAGATATGCAACCAGTTATC 59.066 37.037 0.00 0.00 0.00 1.75
3390 3746 8.732746 TTTAGAAGTAGGAAAGATATGCAACC 57.267 34.615 0.00 0.00 0.00 3.77
3400 3756 9.937175 CAACTCAAAACTTTAGAAGTAGGAAAG 57.063 33.333 0.00 0.00 41.91 2.62
3401 3757 8.899771 CCAACTCAAAACTTTAGAAGTAGGAAA 58.100 33.333 0.00 0.00 41.91 3.13
3402 3758 8.050930 ACCAACTCAAAACTTTAGAAGTAGGAA 58.949 33.333 0.00 0.00 41.91 3.36
3403 3759 7.571025 ACCAACTCAAAACTTTAGAAGTAGGA 58.429 34.615 0.00 0.00 41.91 2.94
3404 3760 7.803279 ACCAACTCAAAACTTTAGAAGTAGG 57.197 36.000 0.00 0.00 41.91 3.18
3405 3761 9.543783 ACTACCAACTCAAAACTTTAGAAGTAG 57.456 33.333 0.00 0.00 41.91 2.57
3406 3762 9.538508 GACTACCAACTCAAAACTTTAGAAGTA 57.461 33.333 0.00 0.00 41.91 2.24
3407 3763 8.044908 TGACTACCAACTCAAAACTTTAGAAGT 58.955 33.333 0.00 0.00 45.46 3.01
3408 3764 8.433421 TGACTACCAACTCAAAACTTTAGAAG 57.567 34.615 0.00 0.00 0.00 2.85
3409 3765 8.974060 ATGACTACCAACTCAAAACTTTAGAA 57.026 30.769 0.00 0.00 0.00 2.10
3410 3766 7.660208 GGATGACTACCAACTCAAAACTTTAGA 59.340 37.037 0.00 0.00 0.00 2.10
3411 3767 7.444183 TGGATGACTACCAACTCAAAACTTTAG 59.556 37.037 0.00 0.00 34.25 1.85
3412 3768 7.284074 TGGATGACTACCAACTCAAAACTTTA 58.716 34.615 0.00 0.00 34.25 1.85
3413 3769 6.126409 TGGATGACTACCAACTCAAAACTTT 58.874 36.000 0.00 0.00 34.25 2.66
3414 3770 5.690865 TGGATGACTACCAACTCAAAACTT 58.309 37.500 0.00 0.00 34.25 2.66
3415 3771 5.304686 TGGATGACTACCAACTCAAAACT 57.695 39.130 0.00 0.00 34.25 2.66
3416 3772 6.206634 TGAATGGATGACTACCAACTCAAAAC 59.793 38.462 0.00 0.00 40.93 2.43
3417 3773 6.206634 GTGAATGGATGACTACCAACTCAAAA 59.793 38.462 0.00 0.00 40.93 2.44
3418 3774 5.705441 GTGAATGGATGACTACCAACTCAAA 59.295 40.000 0.00 0.00 40.93 2.69
3419 3775 5.245531 GTGAATGGATGACTACCAACTCAA 58.754 41.667 0.00 0.00 40.93 3.02
3420 3776 4.323485 GGTGAATGGATGACTACCAACTCA 60.323 45.833 0.00 0.00 40.93 3.41
3421 3777 4.080863 AGGTGAATGGATGACTACCAACTC 60.081 45.833 0.00 0.00 40.93 3.01
3422 3778 3.846588 AGGTGAATGGATGACTACCAACT 59.153 43.478 0.00 0.00 40.93 3.16
3423 3779 4.222124 AGGTGAATGGATGACTACCAAC 57.778 45.455 0.00 0.00 40.93 3.77
3424 3780 5.428457 ACATAGGTGAATGGATGACTACCAA 59.572 40.000 0.00 0.00 40.93 3.67
3425 3781 4.968719 ACATAGGTGAATGGATGACTACCA 59.031 41.667 0.00 0.00 41.83 3.25
3426 3782 5.552870 ACATAGGTGAATGGATGACTACC 57.447 43.478 0.00 0.00 0.00 3.18
3429 3785 8.378565 CCTATTAACATAGGTGAATGGATGACT 58.621 37.037 2.72 0.00 45.32 3.41
3430 3786 8.553459 CCTATTAACATAGGTGAATGGATGAC 57.447 38.462 2.72 0.00 45.32 3.06
3445 3801 9.582648 AACACTGTTTAGAAACCCTATTAACAT 57.417 29.630 2.80 0.00 38.11 2.71
3446 3802 8.983702 AACACTGTTTAGAAACCCTATTAACA 57.016 30.769 2.80 0.00 38.11 2.41
3451 3807 9.411189 TGTTTTAACACTGTTTAGAAACCCTAT 57.589 29.630 16.99 0.00 34.46 2.57
3452 3808 8.804912 TGTTTTAACACTGTTTAGAAACCCTA 57.195 30.769 16.99 5.24 34.46 3.53
3453 3809 7.706100 TGTTTTAACACTGTTTAGAAACCCT 57.294 32.000 16.99 0.00 34.46 4.34
3515 3871 7.647715 GCGCCTATTTGTTTTCATACACATTAT 59.352 33.333 0.00 0.00 0.00 1.28
3516 3872 6.970043 GCGCCTATTTGTTTTCATACACATTA 59.030 34.615 0.00 0.00 0.00 1.90
3517 3873 5.804979 GCGCCTATTTGTTTTCATACACATT 59.195 36.000 0.00 0.00 0.00 2.71
3518 3874 5.339990 GCGCCTATTTGTTTTCATACACAT 58.660 37.500 0.00 0.00 0.00 3.21
3519 3875 4.380023 GGCGCCTATTTGTTTTCATACACA 60.380 41.667 22.15 0.00 0.00 3.72
3520 3876 4.102649 GGCGCCTATTTGTTTTCATACAC 58.897 43.478 22.15 0.00 0.00 2.90
3521 3877 3.759086 TGGCGCCTATTTGTTTTCATACA 59.241 39.130 29.70 0.00 0.00 2.29
3522 3878 4.364415 TGGCGCCTATTTGTTTTCATAC 57.636 40.909 29.70 0.00 0.00 2.39
3523 3879 4.218635 TGTTGGCGCCTATTTGTTTTCATA 59.781 37.500 29.70 0.00 0.00 2.15
3524 3880 3.006323 TGTTGGCGCCTATTTGTTTTCAT 59.994 39.130 29.70 0.00 0.00 2.57
3525 3881 2.362397 TGTTGGCGCCTATTTGTTTTCA 59.638 40.909 29.70 8.78 0.00 2.69
3526 3882 2.729360 GTGTTGGCGCCTATTTGTTTTC 59.271 45.455 29.70 5.93 0.00 2.29
3527 3883 2.101582 TGTGTTGGCGCCTATTTGTTTT 59.898 40.909 29.70 0.00 0.00 2.43
3528 3884 1.683917 TGTGTTGGCGCCTATTTGTTT 59.316 42.857 29.70 0.00 0.00 2.83
3529 3885 1.323412 TGTGTTGGCGCCTATTTGTT 58.677 45.000 29.70 0.00 0.00 2.83
3530 3886 1.544724 ATGTGTTGGCGCCTATTTGT 58.455 45.000 29.70 7.06 0.00 2.83
3531 3887 3.988379 ATATGTGTTGGCGCCTATTTG 57.012 42.857 29.70 0.00 0.00 2.32
3532 3888 7.165485 TCTAATATATGTGTTGGCGCCTATTT 58.835 34.615 29.70 13.68 0.00 1.40
3533 3889 6.707290 TCTAATATATGTGTTGGCGCCTATT 58.293 36.000 29.70 20.90 0.00 1.73
3534 3890 6.294361 TCTAATATATGTGTTGGCGCCTAT 57.706 37.500 29.70 17.72 0.00 2.57
3535 3891 5.731957 TCTAATATATGTGTTGGCGCCTA 57.268 39.130 29.70 19.10 0.00 3.93
3536 3892 4.617253 TCTAATATATGTGTTGGCGCCT 57.383 40.909 29.70 8.67 0.00 5.52
3537 3893 5.682943 TTTCTAATATATGTGTTGGCGCC 57.317 39.130 22.73 22.73 0.00 6.53
3615 3971 7.487829 GCTTGTGTCTTTACTGATGTTCAAAAA 59.512 33.333 0.00 0.00 0.00 1.94
3616 3972 6.972328 GCTTGTGTCTTTACTGATGTTCAAAA 59.028 34.615 0.00 0.00 0.00 2.44
3617 3973 6.494842 GCTTGTGTCTTTACTGATGTTCAAA 58.505 36.000 0.00 0.00 0.00 2.69
3618 3974 5.277297 CGCTTGTGTCTTTACTGATGTTCAA 60.277 40.000 0.00 0.00 0.00 2.69
3619 3975 4.211164 CGCTTGTGTCTTTACTGATGTTCA 59.789 41.667 0.00 0.00 0.00 3.18
3620 3976 4.702392 CGCTTGTGTCTTTACTGATGTTC 58.298 43.478 0.00 0.00 0.00 3.18
3621 3977 3.058914 GCGCTTGTGTCTTTACTGATGTT 60.059 43.478 0.00 0.00 0.00 2.71
3622 3978 2.480419 GCGCTTGTGTCTTTACTGATGT 59.520 45.455 0.00 0.00 0.00 3.06
3623 3979 2.738846 AGCGCTTGTGTCTTTACTGATG 59.261 45.455 2.64 0.00 0.00 3.07
3624 3980 2.996621 GAGCGCTTGTGTCTTTACTGAT 59.003 45.455 13.26 0.00 0.00 2.90
3625 3981 2.223947 TGAGCGCTTGTGTCTTTACTGA 60.224 45.455 13.26 0.00 0.00 3.41
3626 3982 2.135139 TGAGCGCTTGTGTCTTTACTG 58.865 47.619 13.26 0.00 0.00 2.74
3627 3983 2.526304 TGAGCGCTTGTGTCTTTACT 57.474 45.000 13.26 0.00 0.00 2.24
3628 3984 3.678072 TGTATGAGCGCTTGTGTCTTTAC 59.322 43.478 13.26 5.93 0.00 2.01
3629 3985 3.678072 GTGTATGAGCGCTTGTGTCTTTA 59.322 43.478 13.26 0.00 0.00 1.85
3630 3986 2.480419 GTGTATGAGCGCTTGTGTCTTT 59.520 45.455 13.26 0.00 0.00 2.52
3631 3987 2.069273 GTGTATGAGCGCTTGTGTCTT 58.931 47.619 13.26 0.00 0.00 3.01
3632 3988 1.000843 TGTGTATGAGCGCTTGTGTCT 59.999 47.619 13.26 0.00 0.00 3.41
3633 3989 1.126846 GTGTGTATGAGCGCTTGTGTC 59.873 52.381 13.26 0.00 0.00 3.67
3634 3990 1.148310 GTGTGTATGAGCGCTTGTGT 58.852 50.000 13.26 0.12 0.00 3.72
3635 3991 0.093535 CGTGTGTATGAGCGCTTGTG 59.906 55.000 13.26 0.00 0.00 3.33
3636 3992 1.626654 GCGTGTGTATGAGCGCTTGT 61.627 55.000 13.26 5.98 45.48 3.16
3637 3993 1.059369 GCGTGTGTATGAGCGCTTG 59.941 57.895 13.26 0.00 45.48 4.01
3638 3994 2.444624 CGCGTGTGTATGAGCGCTT 61.445 57.895 13.26 0.00 46.56 4.68
3639 3995 2.880879 CGCGTGTGTATGAGCGCT 60.881 61.111 11.27 11.27 46.56 5.92
3642 3998 0.229753 GTATGCGCGTGTGTATGAGC 59.770 55.000 13.61 0.00 38.85 4.26
3643 3999 1.255342 GTGTATGCGCGTGTGTATGAG 59.745 52.381 13.61 0.00 0.00 2.90
3644 4000 1.135228 AGTGTATGCGCGTGTGTATGA 60.135 47.619 13.61 0.00 0.00 2.15
3645 4001 1.255342 GAGTGTATGCGCGTGTGTATG 59.745 52.381 13.61 0.00 0.00 2.39
3646 4002 1.135228 TGAGTGTATGCGCGTGTGTAT 60.135 47.619 13.61 0.00 0.00 2.29
3647 4003 0.241481 TGAGTGTATGCGCGTGTGTA 59.759 50.000 13.61 0.00 0.00 2.90
3648 4004 1.006688 TGAGTGTATGCGCGTGTGT 60.007 52.632 13.61 0.00 0.00 3.72
3649 4005 1.416049 GTGAGTGTATGCGCGTGTG 59.584 57.895 13.61 0.00 0.00 3.82
3650 4006 1.736645 GGTGAGTGTATGCGCGTGT 60.737 57.895 13.61 0.00 0.00 4.49
3651 4007 2.452813 GGGTGAGTGTATGCGCGTG 61.453 63.158 13.61 0.00 0.00 5.34
3652 4008 2.125673 GGGTGAGTGTATGCGCGT 60.126 61.111 8.43 7.55 0.00 6.01
3653 4009 0.249280 TATGGGTGAGTGTATGCGCG 60.249 55.000 0.00 0.00 0.00 6.86
3654 4010 1.800586 CATATGGGTGAGTGTATGCGC 59.199 52.381 0.00 0.00 0.00 6.09
3655 4011 3.385193 TCATATGGGTGAGTGTATGCG 57.615 47.619 2.13 0.00 0.00 4.73
3656 4012 3.494626 CGTTCATATGGGTGAGTGTATGC 59.505 47.826 2.13 0.00 0.00 3.14
3657 4013 3.494626 GCGTTCATATGGGTGAGTGTATG 59.505 47.826 2.13 0.00 0.00 2.39
3658 4014 3.133901 TGCGTTCATATGGGTGAGTGTAT 59.866 43.478 2.13 0.00 0.00 2.29
3659 4015 2.498078 TGCGTTCATATGGGTGAGTGTA 59.502 45.455 2.13 0.00 0.00 2.90
3660 4016 1.277842 TGCGTTCATATGGGTGAGTGT 59.722 47.619 2.13 0.00 0.00 3.55
3661 4017 1.665679 GTGCGTTCATATGGGTGAGTG 59.334 52.381 2.13 0.00 0.00 3.51
3662 4018 1.277842 TGTGCGTTCATATGGGTGAGT 59.722 47.619 2.13 0.00 0.00 3.41
3663 4019 1.665679 GTGTGCGTTCATATGGGTGAG 59.334 52.381 2.13 0.00 0.00 3.51
3664 4020 1.002544 TGTGTGCGTTCATATGGGTGA 59.997 47.619 2.13 0.00 0.00 4.02
3665 4021 1.130373 GTGTGTGCGTTCATATGGGTG 59.870 52.381 2.13 0.00 0.00 4.61
3666 4022 1.448985 GTGTGTGCGTTCATATGGGT 58.551 50.000 2.13 0.00 0.00 4.51
3667 4023 0.373370 CGTGTGTGCGTTCATATGGG 59.627 55.000 2.13 0.00 0.00 4.00
3668 4024 0.247655 GCGTGTGTGCGTTCATATGG 60.248 55.000 2.13 0.00 0.00 2.74
3669 4025 0.441921 TGCGTGTGTGCGTTCATATG 59.558 50.000 0.00 0.00 37.81 1.78
3670 4026 0.442310 GTGCGTGTGTGCGTTCATAT 59.558 50.000 0.00 0.00 37.81 1.78
3671 4027 0.876342 TGTGCGTGTGTGCGTTCATA 60.876 50.000 0.00 0.00 37.81 2.15
3672 4028 2.176926 TGTGCGTGTGTGCGTTCAT 61.177 52.632 0.00 0.00 37.81 2.57
3673 4029 2.815647 TGTGCGTGTGTGCGTTCA 60.816 55.556 0.00 0.00 37.81 3.18
3674 4030 2.350760 GTGTGCGTGTGTGCGTTC 60.351 61.111 0.00 0.00 37.81 3.95
3675 4031 3.871574 GGTGTGCGTGTGTGCGTT 61.872 61.111 0.00 0.00 37.81 4.84
3678 4034 2.280524 TAGGGTGTGCGTGTGTGC 60.281 61.111 0.00 0.00 0.00 4.57
3679 4035 1.959226 GGTAGGGTGTGCGTGTGTG 60.959 63.158 0.00 0.00 0.00 3.82
3680 4036 2.424302 GGTAGGGTGTGCGTGTGT 59.576 61.111 0.00 0.00 0.00 3.72
3681 4037 2.358247 GGGTAGGGTGTGCGTGTG 60.358 66.667 0.00 0.00 0.00 3.82
3682 4038 2.735151 TAGGGGTAGGGTGTGCGTGT 62.735 60.000 0.00 0.00 0.00 4.49
3683 4039 1.985662 TAGGGGTAGGGTGTGCGTG 60.986 63.158 0.00 0.00 0.00 5.34
3684 4040 1.986210 GTAGGGGTAGGGTGTGCGT 60.986 63.158 0.00 0.00 0.00 5.24
3685 4041 2.897972 GTAGGGGTAGGGTGTGCG 59.102 66.667 0.00 0.00 0.00 5.34
3686 4042 1.673808 CTCGTAGGGGTAGGGTGTGC 61.674 65.000 0.00 0.00 0.00 4.57
3687 4043 1.673808 GCTCGTAGGGGTAGGGTGTG 61.674 65.000 0.00 0.00 0.00 3.82
3688 4044 1.380920 GCTCGTAGGGGTAGGGTGT 60.381 63.158 0.00 0.00 0.00 4.16
3689 4045 1.380785 TGCTCGTAGGGGTAGGGTG 60.381 63.158 0.00 0.00 0.00 4.61
3690 4046 1.380920 GTGCTCGTAGGGGTAGGGT 60.381 63.158 0.00 0.00 0.00 4.34
3691 4047 2.132352 GGTGCTCGTAGGGGTAGGG 61.132 68.421 0.00 0.00 0.00 3.53
3692 4048 1.076192 AGGTGCTCGTAGGGGTAGG 60.076 63.158 0.00 0.00 0.00 3.18
3693 4049 1.108132 GGAGGTGCTCGTAGGGGTAG 61.108 65.000 0.00 0.00 0.00 3.18
3694 4050 1.076485 GGAGGTGCTCGTAGGGGTA 60.076 63.158 0.00 0.00 0.00 3.69
3695 4051 2.363925 GGAGGTGCTCGTAGGGGT 60.364 66.667 0.00 0.00 0.00 4.95
3696 4052 3.528370 CGGAGGTGCTCGTAGGGG 61.528 72.222 0.00 0.00 0.00 4.79
3697 4053 1.601419 TTTCGGAGGTGCTCGTAGGG 61.601 60.000 0.00 0.00 0.00 3.53
3698 4054 0.179134 CTTTCGGAGGTGCTCGTAGG 60.179 60.000 0.00 0.00 0.00 3.18
3699 4055 0.809385 TCTTTCGGAGGTGCTCGTAG 59.191 55.000 0.00 0.00 0.00 3.51
3700 4056 0.524862 GTCTTTCGGAGGTGCTCGTA 59.475 55.000 0.00 0.00 0.00 3.43
3701 4057 1.179814 AGTCTTTCGGAGGTGCTCGT 61.180 55.000 0.00 0.00 0.00 4.18
3702 4058 0.734253 CAGTCTTTCGGAGGTGCTCG 60.734 60.000 0.00 0.00 0.00 5.03
3703 4059 0.603569 TCAGTCTTTCGGAGGTGCTC 59.396 55.000 0.00 0.00 0.00 4.26
3704 4060 0.605589 CTCAGTCTTTCGGAGGTGCT 59.394 55.000 0.00 0.00 35.32 4.40
3705 4061 1.016653 GCTCAGTCTTTCGGAGGTGC 61.017 60.000 0.00 0.00 38.48 5.01
3706 4062 0.390472 GGCTCAGTCTTTCGGAGGTG 60.390 60.000 0.00 0.00 38.48 4.00
3707 4063 1.878656 CGGCTCAGTCTTTCGGAGGT 61.879 60.000 0.00 0.00 38.48 3.85
3708 4064 1.153745 CGGCTCAGTCTTTCGGAGG 60.154 63.158 0.00 0.00 38.48 4.30
3709 4065 1.153745 CCGGCTCAGTCTTTCGGAG 60.154 63.158 0.00 0.00 42.94 4.63
3710 4066 0.609957 TACCGGCTCAGTCTTTCGGA 60.610 55.000 0.00 0.00 42.94 4.55
3711 4067 0.460311 ATACCGGCTCAGTCTTTCGG 59.540 55.000 0.00 0.00 45.42 4.30
3712 4068 3.004419 TGATATACCGGCTCAGTCTTTCG 59.996 47.826 0.00 0.00 0.00 3.46
3713 4069 4.585955 TGATATACCGGCTCAGTCTTTC 57.414 45.455 0.00 0.00 0.00 2.62
3714 4070 4.835615 AGATGATATACCGGCTCAGTCTTT 59.164 41.667 0.00 0.00 0.00 2.52
3715 4071 4.411927 AGATGATATACCGGCTCAGTCTT 58.588 43.478 0.00 0.00 0.00 3.01
3716 4072 4.040936 AGATGATATACCGGCTCAGTCT 57.959 45.455 0.00 2.84 0.00 3.24
3717 4073 4.792521 AAGATGATATACCGGCTCAGTC 57.207 45.455 0.00 0.00 0.00 3.51
3718 4074 6.665992 TTTAAGATGATATACCGGCTCAGT 57.334 37.500 0.00 0.00 0.00 3.41
3719 4075 8.553459 AATTTTAAGATGATATACCGGCTCAG 57.447 34.615 0.00 0.00 0.00 3.35
3720 4076 8.918202 AAATTTTAAGATGATATACCGGCTCA 57.082 30.769 0.00 0.00 0.00 4.26
3722 4078 8.932791 CGTAAATTTTAAGATGATATACCGGCT 58.067 33.333 0.00 0.00 0.00 5.52
3723 4079 8.928733 TCGTAAATTTTAAGATGATATACCGGC 58.071 33.333 0.00 0.00 0.00 6.13
3731 4087 8.388103 CGGTGACTTCGTAAATTTTAAGATGAT 58.612 33.333 18.20 8.01 0.00 2.45
3732 4088 7.385752 ACGGTGACTTCGTAAATTTTAAGATGA 59.614 33.333 18.20 2.32 39.22 2.92
3733 4089 7.515643 ACGGTGACTTCGTAAATTTTAAGATG 58.484 34.615 12.94 12.94 39.22 2.90
3734 4090 7.662604 ACGGTGACTTCGTAAATTTTAAGAT 57.337 32.000 12.10 0.00 39.22 2.40
3735 4091 7.329226 CCTACGGTGACTTCGTAAATTTTAAGA 59.671 37.037 12.10 1.32 41.62 2.10
3736 4092 7.450627 CCTACGGTGACTTCGTAAATTTTAAG 58.549 38.462 0.00 1.31 41.62 1.85
3737 4093 6.128580 GCCTACGGTGACTTCGTAAATTTTAA 60.129 38.462 0.00 0.00 41.62 1.52
3738 4094 5.348451 GCCTACGGTGACTTCGTAAATTTTA 59.652 40.000 0.00 0.00 41.62 1.52
3739 4095 4.152938 GCCTACGGTGACTTCGTAAATTTT 59.847 41.667 0.00 0.00 41.62 1.82
3740 4096 3.681417 GCCTACGGTGACTTCGTAAATTT 59.319 43.478 0.00 0.00 41.62 1.82
3741 4097 3.256558 GCCTACGGTGACTTCGTAAATT 58.743 45.455 0.00 0.00 41.62 1.82
3742 4098 2.231964 TGCCTACGGTGACTTCGTAAAT 59.768 45.455 0.00 0.00 41.62 1.40
3743 4099 1.612950 TGCCTACGGTGACTTCGTAAA 59.387 47.619 0.00 0.00 41.62 2.01
3744 4100 1.068333 GTGCCTACGGTGACTTCGTAA 60.068 52.381 0.00 0.00 41.62 3.18
3745 4101 0.523072 GTGCCTACGGTGACTTCGTA 59.477 55.000 0.00 0.00 41.38 3.43
3746 4102 1.288127 GTGCCTACGGTGACTTCGT 59.712 57.895 0.00 0.00 43.64 3.85
3747 4103 1.445582 GGTGCCTACGGTGACTTCG 60.446 63.158 0.00 0.00 0.00 3.79
3748 4104 0.108756 GAGGTGCCTACGGTGACTTC 60.109 60.000 0.00 0.00 0.00 3.01
3749 4105 0.830444 TGAGGTGCCTACGGTGACTT 60.830 55.000 0.00 0.00 0.00 3.01
3750 4106 0.614979 ATGAGGTGCCTACGGTGACT 60.615 55.000 0.00 0.00 0.00 3.41
3751 4107 0.179108 GATGAGGTGCCTACGGTGAC 60.179 60.000 0.00 0.00 0.00 3.67
3752 4108 1.663379 CGATGAGGTGCCTACGGTGA 61.663 60.000 0.00 0.00 0.00 4.02
3753 4109 1.226974 CGATGAGGTGCCTACGGTG 60.227 63.158 0.00 0.00 0.00 4.94
3754 4110 1.664321 GACGATGAGGTGCCTACGGT 61.664 60.000 13.25 0.00 0.00 4.83
3755 4111 1.065928 GACGATGAGGTGCCTACGG 59.934 63.158 13.25 0.00 0.00 4.02
3756 4112 1.298413 CGACGATGAGGTGCCTACG 60.298 63.158 0.00 9.22 0.00 3.51
3757 4113 0.248539 GTCGACGATGAGGTGCCTAC 60.249 60.000 0.00 0.00 0.00 3.18
3758 4114 1.712018 CGTCGACGATGAGGTGCCTA 61.712 60.000 33.35 0.00 43.02 3.93
3759 4115 2.885861 GTCGACGATGAGGTGCCT 59.114 61.111 0.00 0.00 0.00 4.75
3760 4116 2.579787 CGTCGACGATGAGGTGCC 60.580 66.667 33.35 0.00 43.02 5.01
3761 4117 2.579787 CCGTCGACGATGAGGTGC 60.580 66.667 37.65 0.00 43.02 5.01
3762 4118 1.929806 TTCCCGTCGACGATGAGGTG 61.930 60.000 37.65 19.12 43.02 4.00
3763 4119 1.676635 TTCCCGTCGACGATGAGGT 60.677 57.895 37.65 0.00 43.02 3.85
3764 4120 1.226603 GTTCCCGTCGACGATGAGG 60.227 63.158 37.65 28.37 43.02 3.86
3765 4121 1.582937 CGTTCCCGTCGACGATGAG 60.583 63.158 37.65 20.95 41.53 2.90
3766 4122 2.327343 ACGTTCCCGTCGACGATGA 61.327 57.895 37.65 28.41 46.28 2.92
3767 4123 2.177531 ACGTTCCCGTCGACGATG 59.822 61.111 37.65 26.71 46.28 3.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.