Multiple sequence alignment - TraesCS3A01G101800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G101800 chr3A 100.000 4019 0 0 1 4019 66061365 66065383 0.000000e+00 7422
1 TraesCS3A01G101800 chr3B 88.626 3675 285 68 1 3600 89355363 89351747 0.000000e+00 4348
2 TraesCS3A01G101800 chr3B 91.686 3019 190 22 594 3600 89092640 89095609 0.000000e+00 4128
3 TraesCS3A01G101800 chr3B 73.715 1537 366 33 1109 2617 576020773 576022299 2.100000e-157 566
4 TraesCS3A01G101800 chr3B 89.080 348 20 4 21 359 89065985 89066323 2.230000e-112 416
5 TraesCS3A01G101800 chr3D 89.723 3036 201 42 350 3287 56687735 56684713 0.000000e+00 3775
6 TraesCS3A01G101800 chr3D 90.256 390 36 2 3620 4009 360593323 360592936 3.580000e-140 508
7 TraesCS3A01G101800 chr3D 89.500 400 41 1 3620 4019 31975428 31975030 4.640000e-139 505
8 TraesCS3A01G101800 chr3D 90.728 151 10 2 1 148 56688326 56688177 8.810000e-47 198
9 TraesCS3A01G101800 chr3D 90.476 84 8 0 735 818 56689275 56689192 1.180000e-20 111
10 TraesCS3A01G101800 chr6D 90.274 401 36 3 3620 4019 192100797 192100399 4.600000e-144 521
11 TraesCS3A01G101800 chr6D 88.974 390 34 7 3212 3600 18949902 18950283 1.310000e-129 473
12 TraesCS3A01G101800 chr2A 89.950 398 34 3 3620 4017 235312402 235312011 3.580000e-140 508
13 TraesCS3A01G101800 chr6B 90.415 386 35 2 3620 4004 662252449 662252065 1.290000e-139 507
14 TraesCS3A01G101800 chr5A 89.526 401 39 3 3620 4019 454198760 454198362 4.640000e-139 505
15 TraesCS3A01G101800 chr4A 89.250 400 37 4 3620 4017 30813801 30813406 2.790000e-136 496
16 TraesCS3A01G101800 chr4A 88.750 400 45 0 3620 4019 602940600 602940201 1.300000e-134 490
17 TraesCS3A01G101800 chr7D 89.870 385 35 2 3620 4004 4357475 4357855 3.610000e-135 492
18 TraesCS3A01G101800 chr7D 88.974 390 34 7 3212 3600 124864788 124865169 1.310000e-129 473
19 TraesCS3A01G101800 chr7D 88.974 390 34 7 3212 3600 429090944 429091325 1.310000e-129 473
20 TraesCS3A01G101800 chr5D 88.974 390 34 7 3212 3600 53887709 53887328 1.310000e-129 473
21 TraesCS3A01G101800 chr1D 88.974 390 33 8 3212 3600 266861272 266860892 1.310000e-129 473
22 TraesCS3A01G101800 chr1D 88.974 390 34 7 3212 3600 394221868 394221487 1.310000e-129 473
23 TraesCS3A01G101800 chr4D 88.718 390 35 7 3212 3600 27891680 27891299 6.080000e-128 468


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G101800 chr3A 66061365 66065383 4018 False 7422.000000 7422 100.000 1 4019 1 chr3A.!!$F1 4018
1 TraesCS3A01G101800 chr3B 89351747 89355363 3616 True 4348.000000 4348 88.626 1 3600 1 chr3B.!!$R1 3599
2 TraesCS3A01G101800 chr3B 89092640 89095609 2969 False 4128.000000 4128 91.686 594 3600 1 chr3B.!!$F2 3006
3 TraesCS3A01G101800 chr3B 576020773 576022299 1526 False 566.000000 566 73.715 1109 2617 1 chr3B.!!$F3 1508
4 TraesCS3A01G101800 chr3D 56684713 56689275 4562 True 1361.333333 3775 90.309 1 3287 3 chr3D.!!$R3 3286

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
998 2377 0.392729 CCTTGCCAGAGAGCTCAAGG 60.393 60.0 17.77 15.24 46.33 3.61 F
1653 3050 0.034059 ACGTGTTCTTGGCTCCTCTG 59.966 55.0 0.00 0.00 0.00 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2781 4211 0.394899 GCCCTAGCTTCAGCACCAAT 60.395 55.0 0.75 0.0 45.16 3.16 R
3604 5070 0.822121 AGCGGACCCTTTTGTGGTTC 60.822 55.0 0.00 0.0 35.85 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 1026 0.609681 GTCTCCTCAGTGGACCGACT 60.610 60.000 4.40 0.00 40.56 4.18
78 1028 1.304217 TCCTCAGTGGACCGACTCC 60.304 63.158 0.00 0.00 40.56 3.85
83 1033 1.000646 AGTGGACCGACTCCTCTCC 60.001 63.158 1.34 0.00 38.32 3.71
114 1067 4.934075 TCGCTTTCACATTTCTCTCATG 57.066 40.909 0.00 0.00 0.00 3.07
122 1075 5.319453 TCACATTTCTCTCATGCTTTTCCT 58.681 37.500 0.00 0.00 0.00 3.36
123 1076 5.182570 TCACATTTCTCTCATGCTTTTCCTG 59.817 40.000 0.00 0.00 0.00 3.86
129 1082 4.999950 TCTCTCATGCTTTTCCTGAAACTC 59.000 41.667 0.00 0.00 0.00 3.01
145 1098 3.626996 CTCCAGCCATGCAACCGGA 62.627 63.158 9.46 0.00 0.00 5.14
151 1104 3.585990 CATGCAACCGGATCGCCC 61.586 66.667 9.46 0.00 0.00 6.13
165 1118 2.361230 GCCCTGGGTTAGCCACAC 60.361 66.667 15.56 0.00 36.17 3.82
174 1129 3.320541 TGGGTTAGCCACACAGAAAAATG 59.679 43.478 0.00 0.00 31.91 2.32
183 1138 1.001487 CACAGAAAAATGGCTGTCGCA 60.001 47.619 0.00 0.00 43.06 5.10
199 1154 5.638596 TGTCGCAGTAGACTTTTATCAGA 57.361 39.130 0.00 0.00 41.47 3.27
200 1155 5.641709 TGTCGCAGTAGACTTTTATCAGAG 58.358 41.667 0.00 0.00 41.47 3.35
202 1157 6.072119 TGTCGCAGTAGACTTTTATCAGAGAA 60.072 38.462 0.00 0.00 41.47 2.87
203 1158 6.975772 GTCGCAGTAGACTTTTATCAGAGAAT 59.024 38.462 0.00 0.00 38.09 2.40
213 1170 8.940768 ACTTTTATCAGAGAATAGACAAGCTC 57.059 34.615 2.62 0.00 0.00 4.09
217 1174 8.532186 TTATCAGAGAATAGACAAGCTCTTCT 57.468 34.615 2.79 2.79 41.26 2.85
228 1185 2.435586 CTCTTCTGCAGGCACCCG 60.436 66.667 15.13 0.00 0.00 5.28
259 1216 3.013921 ACAAACAACACGTCCATCAGTT 58.986 40.909 0.00 0.00 0.00 3.16
265 1222 1.156736 CACGTCCATCAGTTTGGGAC 58.843 55.000 0.00 0.00 46.01 4.46
267 1224 1.019278 CGTCCATCAGTTTGGGACCG 61.019 60.000 0.00 0.00 46.61 4.79
318 1275 1.731969 GTGTCCACCGTGTAGCGAC 60.732 63.158 0.00 0.00 44.77 5.19
338 1295 1.903404 GCCCAGTCCTTGGTGTTGG 60.903 63.158 0.00 0.00 46.25 3.77
352 1309 1.224592 GTTGGGCGGATGAGGATGT 59.775 57.895 0.00 0.00 0.00 3.06
387 1685 7.142680 CAGTATGTAGAAAACTCTAGGCTAGC 58.857 42.308 16.85 6.04 0.00 3.42
389 1687 8.219178 AGTATGTAGAAAACTCTAGGCTAGCTA 58.781 37.037 16.85 8.23 0.00 3.32
390 1688 6.696441 TGTAGAAAACTCTAGGCTAGCTAC 57.304 41.667 16.85 18.48 0.00 3.58
392 1690 6.834451 TGTAGAAAACTCTAGGCTAGCTACAT 59.166 38.462 22.59 9.74 33.07 2.29
394 1692 7.899648 AGAAAACTCTAGGCTAGCTACATTA 57.100 36.000 16.85 0.00 0.00 1.90
395 1693 8.485578 AGAAAACTCTAGGCTAGCTACATTAT 57.514 34.615 16.85 3.04 0.00 1.28
396 1694 9.589461 AGAAAACTCTAGGCTAGCTACATTATA 57.411 33.333 16.85 0.00 0.00 0.98
409 1707 4.629634 GCTACATTATATGTGCGGTGCATA 59.370 41.667 2.68 0.00 44.60 3.14
414 1712 2.812358 TATGTGCGGTGCATACCTAG 57.188 50.000 0.00 0.00 45.22 3.02
430 1728 2.856039 CTAGCCCGGACCACCTCAGA 62.856 65.000 0.73 0.00 0.00 3.27
440 1738 1.554160 ACCACCTCAGATTCAGCAGAG 59.446 52.381 0.00 0.00 0.00 3.35
453 1751 2.170397 TCAGCAGAGAAGTCCAACACAA 59.830 45.455 0.00 0.00 0.00 3.33
475 1788 1.294659 GCATATGCAGACCGCTAGCC 61.295 60.000 22.84 0.00 43.06 3.93
480 1793 2.811101 CAGACCGCTAGCCAGAGG 59.189 66.667 9.66 7.01 46.55 3.69
484 1797 4.577246 CCGCTAGCCAGAGGACGC 62.577 72.222 9.66 0.00 44.08 5.19
495 1812 3.735037 GAGGACGCCGGGATTGACC 62.735 68.421 2.18 0.00 38.08 4.02
502 1819 1.523711 CCGGGATTGACCATGACGG 60.524 63.158 0.00 0.00 41.20 4.79
523 1844 2.779755 TCATGCATACCCAGTCGTTT 57.220 45.000 0.00 0.00 0.00 3.60
524 1845 3.066291 TCATGCATACCCAGTCGTTTT 57.934 42.857 0.00 0.00 0.00 2.43
528 1849 3.592059 TGCATACCCAGTCGTTTTAGAC 58.408 45.455 0.00 0.00 41.23 2.59
562 1906 5.227908 ACTTATCACCAACAGAAGTGTACG 58.772 41.667 0.00 0.00 35.08 3.67
570 1914 2.607187 ACAGAAGTGTACGCATGCTAC 58.393 47.619 17.13 16.41 34.05 3.58
608 1952 2.409948 ATTCAAAGGCTCTTCCCTCG 57.590 50.000 0.00 0.00 32.93 4.63
641 1999 6.092259 GGAGAGAATTATAACAACGTGTTGCT 59.908 38.462 12.42 3.33 41.30 3.91
642 2000 7.277098 GGAGAGAATTATAACAACGTGTTGCTA 59.723 37.037 12.42 5.54 41.30 3.49
643 2001 7.960793 AGAGAATTATAACAACGTGTTGCTAC 58.039 34.615 12.42 0.00 41.30 3.58
644 2002 7.817962 AGAGAATTATAACAACGTGTTGCTACT 59.182 33.333 12.42 0.00 41.30 2.57
645 2003 8.319143 AGAATTATAACAACGTGTTGCTACTT 57.681 30.769 12.42 2.63 41.30 2.24
646 2004 8.227791 AGAATTATAACAACGTGTTGCTACTTG 58.772 33.333 12.42 0.00 41.30 3.16
726 2084 1.144057 GCGTCGATGGGGAGACAAT 59.856 57.895 6.79 0.00 0.00 2.71
784 2144 2.807967 CCACTTTCTCTTCGATTGCACA 59.192 45.455 0.00 0.00 0.00 4.57
788 2148 1.418373 TCTCTTCGATTGCACACGTG 58.582 50.000 15.48 15.48 0.00 4.49
800 2160 0.798159 CACACGTGGATGGTGATGTG 59.202 55.000 21.57 0.42 38.73 3.21
895 2265 0.455410 GCAGTTGTTTGCCACTGTCA 59.545 50.000 1.55 0.00 38.13 3.58
896 2266 1.798813 GCAGTTGTTTGCCACTGTCAC 60.799 52.381 1.55 0.00 38.13 3.67
927 2300 8.438373 ACATACAGCAGTACTACTTAGATAGGA 58.562 37.037 0.00 0.00 31.96 2.94
928 2301 9.456147 CATACAGCAGTACTACTTAGATAGGAT 57.544 37.037 0.00 0.00 31.96 3.24
933 2306 6.885376 GCAGTACTACTTAGATAGGATAGCCA 59.115 42.308 0.00 0.00 36.29 4.75
934 2307 7.148205 GCAGTACTACTTAGATAGGATAGCCAC 60.148 44.444 0.00 0.00 36.29 5.01
935 2308 7.883833 CAGTACTACTTAGATAGGATAGCCACA 59.116 40.741 0.00 0.00 36.29 4.17
936 2309 7.884354 AGTACTACTTAGATAGGATAGCCACAC 59.116 40.741 0.00 0.00 36.29 3.82
937 2310 6.011481 ACTACTTAGATAGGATAGCCACACC 58.989 44.000 0.00 0.00 36.29 4.16
938 2311 3.827302 ACTTAGATAGGATAGCCACACCG 59.173 47.826 0.00 0.00 36.29 4.94
939 2312 1.633774 AGATAGGATAGCCACACCGG 58.366 55.000 0.00 0.00 36.29 5.28
940 2313 1.133136 AGATAGGATAGCCACACCGGT 60.133 52.381 0.00 0.00 36.97 5.28
942 2315 1.696063 TAGGATAGCCACACCGGTAC 58.304 55.000 6.87 0.00 36.97 3.34
958 2331 4.117685 CCGGTACTAGTTGTTTATCAGCC 58.882 47.826 0.00 0.00 0.00 4.85
969 2342 7.250569 AGTTGTTTATCAGCCACAAAATATCG 58.749 34.615 0.00 0.00 32.32 2.92
989 2363 6.867662 ATCGTAATATTTTCCTTGCCAGAG 57.132 37.500 0.00 0.00 0.00 3.35
990 2364 5.984725 TCGTAATATTTTCCTTGCCAGAGA 58.015 37.500 0.00 0.00 0.00 3.10
995 2374 1.059098 TTTCCTTGCCAGAGAGCTCA 58.941 50.000 17.77 0.00 0.00 4.26
998 2377 0.392729 CCTTGCCAGAGAGCTCAAGG 60.393 60.000 17.77 15.24 46.33 3.61
1032 2411 2.158971 GGAGCACATCTTCTTCCTCCTC 60.159 54.545 0.00 0.00 36.73 3.71
1033 2412 2.765699 GAGCACATCTTCTTCCTCCTCT 59.234 50.000 0.00 0.00 0.00 3.69
1058 2440 1.134670 CATCCCACTCCTCGTTCTTCC 60.135 57.143 0.00 0.00 0.00 3.46
1059 2441 0.903454 TCCCACTCCTCGTTCTTCCC 60.903 60.000 0.00 0.00 0.00 3.97
1060 2442 0.905337 CCCACTCCTCGTTCTTCCCT 60.905 60.000 0.00 0.00 0.00 4.20
1061 2443 0.247736 CCACTCCTCGTTCTTCCCTG 59.752 60.000 0.00 0.00 0.00 4.45
1098 2486 3.427503 CCAGCAACGACAGTTTCAGTTTT 60.428 43.478 0.00 0.00 38.79 2.43
1107 2495 7.848491 ACGACAGTTTCAGTTTTCTATACAAC 58.152 34.615 0.00 0.00 0.00 3.32
1142 2530 4.135153 CCTCACCCTCGACGGCAG 62.135 72.222 0.00 0.00 0.00 4.85
1278 2669 1.153469 CTTCTCCCTCAGCTTCGCC 60.153 63.158 0.00 0.00 0.00 5.54
1401 2798 0.537143 TCCTCAACAGCGGCAACAAT 60.537 50.000 1.45 0.00 0.00 2.71
1545 2942 1.337071 CGCACTGGGTACTACGATGAT 59.663 52.381 0.00 0.00 0.00 2.45
1552 2949 5.163227 ACTGGGTACTACGATGATGAGAGTA 60.163 44.000 0.00 0.00 0.00 2.59
1567 2964 3.898123 TGAGAGTAGAGCCTTCAACAACT 59.102 43.478 0.00 0.00 0.00 3.16
1653 3050 0.034059 ACGTGTTCTTGGCTCCTCTG 59.966 55.000 0.00 0.00 0.00 3.35
1797 3194 4.143333 GGCTGGAGCTTCGCCGTA 62.143 66.667 11.35 0.00 41.70 4.02
1827 3224 0.463204 CTCCAGCCATCGACACATCT 59.537 55.000 0.00 0.00 0.00 2.90
1923 3320 1.068333 GCCACGTTCGTCCTTGTAGTA 60.068 52.381 0.00 0.00 0.00 1.82
1939 3336 7.038302 TCCTTGTAGTAGGAACTGTCATCATTT 60.038 37.037 0.00 0.00 41.33 2.32
2305 3726 6.096001 GTCAAATGGAAGCCTCAATCAGTATT 59.904 38.462 0.00 0.00 0.00 1.89
2312 3733 8.494433 TGGAAGCCTCAATCAGTATTTATACTT 58.506 33.333 0.00 0.00 41.44 2.24
2574 4004 2.879462 GCGCCTGAGTTCGTACGG 60.879 66.667 16.52 0.00 0.00 4.02
2634 4064 3.199946 TCGGCATATTTCTCCTTGAGGTT 59.800 43.478 0.00 0.00 36.34 3.50
2709 4139 1.674962 GTCGACTGGGTTATAGAGCGT 59.325 52.381 8.70 0.00 0.00 5.07
2744 4174 1.344438 GCTCATGGATACCGTGGATCA 59.656 52.381 9.65 0.00 40.65 2.92
2781 4211 4.696455 ACTACAACATCGATGATGCATCA 58.304 39.130 30.47 30.47 43.15 3.07
2964 4394 5.132897 TGGAATCACCAAACTTGCAATAC 57.867 39.130 0.00 0.00 46.75 1.89
3056 4486 4.617645 GTGTTCAGTGTTATCGTGTCTCTC 59.382 45.833 0.00 0.00 0.00 3.20
3057 4487 4.519350 TGTTCAGTGTTATCGTGTCTCTCT 59.481 41.667 0.00 0.00 0.00 3.10
3140 4605 6.686632 ATGTATTCAAACACTAGCTAGGGAGC 60.687 42.308 29.71 9.72 39.64 4.70
3178 4643 5.305644 ACTTCACTTCAGATGTTACTCTGGT 59.694 40.000 10.33 2.05 42.42 4.00
3187 4652 5.521735 CAGATGTTACTCTGGTTGTCTATGC 59.478 44.000 4.62 0.00 39.20 3.14
3192 4657 3.169099 ACTCTGGTTGTCTATGCTCAGT 58.831 45.455 0.00 0.00 0.00 3.41
3207 4672 4.250464 TGCTCAGTTTAATTACTCACGGG 58.750 43.478 0.00 0.00 0.00 5.28
3214 4679 7.334921 TCAGTTTAATTACTCACGGGGTTAATG 59.665 37.037 0.00 0.00 0.00 1.90
3383 4849 6.873997 TCACTAACTGAATGGATTACATCGT 58.126 36.000 0.00 0.00 39.40 3.73
3389 4855 4.359706 TGAATGGATTACATCGTCTCGTG 58.640 43.478 0.00 0.00 39.40 4.35
3399 4865 1.589803 TCGTCTCGTGAGTTGTCTGA 58.410 50.000 0.00 0.00 0.00 3.27
3437 4903 8.958119 TTTGGGTCAGTTTGAGTGATATATAC 57.042 34.615 0.00 0.00 29.14 1.47
3443 4909 8.198109 GTCAGTTTGAGTGATATATACAGGTGT 58.802 37.037 0.00 0.00 29.14 4.16
3450 4916 6.062749 AGTGATATATACAGGTGTCAGTCGT 58.937 40.000 0.00 0.00 0.00 4.34
3477 4943 5.251700 AGCTTGAAAGAAATCTTAGGAGGGA 59.748 40.000 0.00 0.00 34.61 4.20
3485 4951 1.475403 TCTTAGGAGGGACGAAGCTG 58.525 55.000 0.00 0.00 0.00 4.24
3486 4952 1.187087 CTTAGGAGGGACGAAGCTGT 58.813 55.000 0.00 0.00 0.00 4.40
3513 4979 4.476628 TTTAGGACTACCCCAAATCGTC 57.523 45.455 0.00 0.00 36.73 4.20
3520 4986 1.603306 CCCCAAATCGTCCGGGTTA 59.397 57.895 0.00 0.00 38.40 2.85
3550 5016 3.987868 TGTACTTGAAGTGTCGATCTTGC 59.012 43.478 8.33 4.21 0.00 4.01
3572 5038 4.561213 GCGTACCATAAACTTTGCAATTCC 59.439 41.667 0.00 0.00 0.00 3.01
3584 5050 2.392662 TGCAATTCCACAAAAGGGTCA 58.607 42.857 0.00 0.00 0.00 4.02
3593 5059 3.420893 CACAAAAGGGTCAGCATAAGGA 58.579 45.455 0.00 0.00 0.00 3.36
3607 5073 5.084385 GCATAAGGACTGCTTATTCGAAC 57.916 43.478 0.00 0.00 36.68 3.95
3608 5074 4.024809 GCATAAGGACTGCTTATTCGAACC 60.025 45.833 0.00 0.00 36.68 3.62
3609 5075 3.695830 AAGGACTGCTTATTCGAACCA 57.304 42.857 0.00 0.00 0.00 3.67
3610 5076 2.973945 AGGACTGCTTATTCGAACCAC 58.026 47.619 0.00 0.00 0.00 4.16
3611 5077 2.301870 AGGACTGCTTATTCGAACCACA 59.698 45.455 0.00 0.00 0.00 4.17
3612 5078 3.071479 GGACTGCTTATTCGAACCACAA 58.929 45.455 0.00 0.00 0.00 3.33
3613 5079 3.500680 GGACTGCTTATTCGAACCACAAA 59.499 43.478 0.00 0.00 0.00 2.83
3614 5080 4.023536 GGACTGCTTATTCGAACCACAAAA 60.024 41.667 0.00 0.00 0.00 2.44
3615 5081 5.108385 ACTGCTTATTCGAACCACAAAAG 57.892 39.130 0.00 0.00 0.00 2.27
3616 5082 4.023193 ACTGCTTATTCGAACCACAAAAGG 60.023 41.667 0.00 0.00 0.00 3.11
3617 5083 3.254657 TGCTTATTCGAACCACAAAAGGG 59.745 43.478 0.00 0.00 0.00 3.95
3618 5084 3.254903 GCTTATTCGAACCACAAAAGGGT 59.745 43.478 0.00 0.00 41.41 4.34
3619 5085 4.615223 GCTTATTCGAACCACAAAAGGGTC 60.615 45.833 0.00 0.00 42.15 4.46
3620 5086 1.682740 TTCGAACCACAAAAGGGTCC 58.317 50.000 0.00 0.00 42.62 4.46
3621 5087 0.533308 TCGAACCACAAAAGGGTCCG 60.533 55.000 0.00 0.00 42.62 4.79
3622 5088 1.658114 GAACCACAAAAGGGTCCGC 59.342 57.895 0.00 0.00 39.57 5.54
3623 5089 0.822121 GAACCACAAAAGGGTCCGCT 60.822 55.000 0.00 0.00 39.57 5.52
3624 5090 1.106944 AACCACAAAAGGGTCCGCTG 61.107 55.000 0.00 0.00 37.77 5.18
3625 5091 1.528309 CCACAAAAGGGTCCGCTGT 60.528 57.895 0.00 0.00 0.00 4.40
3626 5092 1.654220 CACAAAAGGGTCCGCTGTG 59.346 57.895 5.31 5.31 0.00 3.66
3627 5093 1.101049 CACAAAAGGGTCCGCTGTGT 61.101 55.000 9.48 2.46 34.13 3.72
3628 5094 1.101049 ACAAAAGGGTCCGCTGTGTG 61.101 55.000 1.64 0.00 0.00 3.82
3629 5095 1.528309 AAAAGGGTCCGCTGTGTGG 60.528 57.895 0.00 0.00 33.99 4.17
3630 5096 2.279037 AAAAGGGTCCGCTGTGTGGT 62.279 55.000 0.00 0.00 34.40 4.16
3631 5097 1.412453 AAAGGGTCCGCTGTGTGGTA 61.412 55.000 0.00 0.00 34.40 3.25
3632 5098 1.198759 AAGGGTCCGCTGTGTGGTAT 61.199 55.000 0.00 0.00 34.40 2.73
3633 5099 1.153429 GGGTCCGCTGTGTGGTATC 60.153 63.158 0.00 0.00 34.40 2.24
3634 5100 1.153429 GGTCCGCTGTGTGGTATCC 60.153 63.158 0.00 0.00 34.40 2.59
3635 5101 1.153429 GTCCGCTGTGTGGTATCCC 60.153 63.158 0.00 0.00 34.40 3.85
3636 5102 1.305802 TCCGCTGTGTGGTATCCCT 60.306 57.895 0.00 0.00 34.40 4.20
3637 5103 1.153369 CCGCTGTGTGGTATCCCTG 60.153 63.158 0.00 0.00 0.00 4.45
3638 5104 1.613317 CCGCTGTGTGGTATCCCTGA 61.613 60.000 0.00 0.00 0.00 3.86
3639 5105 0.249120 CGCTGTGTGGTATCCCTGAA 59.751 55.000 0.00 0.00 0.00 3.02
3640 5106 1.740380 CGCTGTGTGGTATCCCTGAAG 60.740 57.143 0.00 0.00 0.00 3.02
3641 5107 1.555075 GCTGTGTGGTATCCCTGAAGA 59.445 52.381 0.00 0.00 0.00 2.87
3642 5108 2.171448 GCTGTGTGGTATCCCTGAAGAT 59.829 50.000 0.00 0.00 0.00 2.40
3643 5109 3.370953 GCTGTGTGGTATCCCTGAAGATT 60.371 47.826 0.00 0.00 0.00 2.40
3644 5110 4.446371 CTGTGTGGTATCCCTGAAGATTC 58.554 47.826 0.00 0.00 0.00 2.52
3645 5111 3.118775 TGTGTGGTATCCCTGAAGATTCG 60.119 47.826 0.00 0.00 0.00 3.34
3646 5112 3.132289 GTGTGGTATCCCTGAAGATTCGA 59.868 47.826 0.00 0.00 0.00 3.71
3647 5113 3.772572 TGTGGTATCCCTGAAGATTCGAA 59.227 43.478 0.00 0.00 0.00 3.71
3648 5114 4.120589 GTGGTATCCCTGAAGATTCGAAC 58.879 47.826 0.00 0.00 0.00 3.95
3649 5115 3.134081 TGGTATCCCTGAAGATTCGAACC 59.866 47.826 0.00 0.00 0.00 3.62
3650 5116 3.134081 GGTATCCCTGAAGATTCGAACCA 59.866 47.826 0.00 0.00 0.00 3.67
3651 5117 2.762535 TCCCTGAAGATTCGAACCAC 57.237 50.000 0.00 0.00 0.00 4.16
3652 5118 1.974957 TCCCTGAAGATTCGAACCACA 59.025 47.619 0.00 0.00 0.00 4.17
3653 5119 2.571653 TCCCTGAAGATTCGAACCACAT 59.428 45.455 0.00 0.00 0.00 3.21
3654 5120 2.939103 CCCTGAAGATTCGAACCACATC 59.061 50.000 0.00 0.00 0.00 3.06
3655 5121 3.369892 CCCTGAAGATTCGAACCACATCT 60.370 47.826 0.00 0.00 0.00 2.90
3656 5122 4.256920 CCTGAAGATTCGAACCACATCTT 58.743 43.478 10.02 10.02 39.49 2.40
3660 5126 6.100792 GAAGATTCGAACCACATCTTCTTC 57.899 41.667 22.44 18.66 45.10 2.87
3661 5127 5.413309 AGATTCGAACCACATCTTCTTCT 57.587 39.130 0.00 0.00 0.00 2.85
3662 5128 5.415221 AGATTCGAACCACATCTTCTTCTC 58.585 41.667 0.00 0.00 0.00 2.87
3663 5129 3.594603 TCGAACCACATCTTCTTCTCC 57.405 47.619 0.00 0.00 0.00 3.71
3664 5130 3.165875 TCGAACCACATCTTCTTCTCCT 58.834 45.455 0.00 0.00 0.00 3.69
3665 5131 3.056536 TCGAACCACATCTTCTTCTCCTG 60.057 47.826 0.00 0.00 0.00 3.86
3666 5132 3.306364 CGAACCACATCTTCTTCTCCTGT 60.306 47.826 0.00 0.00 0.00 4.00
3667 5133 3.692257 ACCACATCTTCTTCTCCTGTG 57.308 47.619 0.00 0.00 37.53 3.66
3668 5134 2.975489 ACCACATCTTCTTCTCCTGTGT 59.025 45.455 0.00 0.00 36.37 3.72
3669 5135 3.244353 ACCACATCTTCTTCTCCTGTGTG 60.244 47.826 0.00 0.00 36.37 3.82
3670 5136 3.244353 CCACATCTTCTTCTCCTGTGTGT 60.244 47.826 0.00 0.00 36.37 3.72
3671 5137 3.993081 CACATCTTCTTCTCCTGTGTGTC 59.007 47.826 0.00 0.00 34.07 3.67
3672 5138 3.007398 ACATCTTCTTCTCCTGTGTGTCC 59.993 47.826 0.00 0.00 0.00 4.02
3673 5139 1.613925 TCTTCTTCTCCTGTGTGTCCG 59.386 52.381 0.00 0.00 0.00 4.79
3674 5140 1.341531 CTTCTTCTCCTGTGTGTCCGT 59.658 52.381 0.00 0.00 0.00 4.69
3675 5141 1.410004 TCTTCTCCTGTGTGTCCGTT 58.590 50.000 0.00 0.00 0.00 4.44
3676 5142 1.760613 TCTTCTCCTGTGTGTCCGTTT 59.239 47.619 0.00 0.00 0.00 3.60
3677 5143 2.960384 TCTTCTCCTGTGTGTCCGTTTA 59.040 45.455 0.00 0.00 0.00 2.01
3678 5144 3.385433 TCTTCTCCTGTGTGTCCGTTTAA 59.615 43.478 0.00 0.00 0.00 1.52
3679 5145 4.039973 TCTTCTCCTGTGTGTCCGTTTAAT 59.960 41.667 0.00 0.00 0.00 1.40
3680 5146 4.345859 TCTCCTGTGTGTCCGTTTAATT 57.654 40.909 0.00 0.00 0.00 1.40
3681 5147 4.312443 TCTCCTGTGTGTCCGTTTAATTC 58.688 43.478 0.00 0.00 0.00 2.17
3682 5148 3.061322 TCCTGTGTGTCCGTTTAATTCG 58.939 45.455 0.00 0.00 0.00 3.34
3683 5149 2.803956 CCTGTGTGTCCGTTTAATTCGT 59.196 45.455 0.00 0.00 0.00 3.85
3684 5150 3.363575 CCTGTGTGTCCGTTTAATTCGTG 60.364 47.826 0.00 0.00 0.00 4.35
3685 5151 3.196463 TGTGTGTCCGTTTAATTCGTGT 58.804 40.909 0.00 0.00 0.00 4.49
3686 5152 3.001431 TGTGTGTCCGTTTAATTCGTGTG 59.999 43.478 0.00 0.00 0.00 3.82
3687 5153 2.544686 TGTGTCCGTTTAATTCGTGTGG 59.455 45.455 0.00 0.00 0.00 4.17
3688 5154 2.801679 GTGTCCGTTTAATTCGTGTGGA 59.198 45.455 0.00 0.00 0.00 4.02
3689 5155 3.061322 TGTCCGTTTAATTCGTGTGGAG 58.939 45.455 0.00 0.00 0.00 3.86
3690 5156 2.070783 TCCGTTTAATTCGTGTGGAGC 58.929 47.619 0.00 0.00 0.00 4.70
3691 5157 2.073816 CCGTTTAATTCGTGTGGAGCT 58.926 47.619 0.00 0.00 0.00 4.09
3692 5158 2.159707 CCGTTTAATTCGTGTGGAGCTG 60.160 50.000 0.00 0.00 0.00 4.24
3693 5159 2.724839 CGTTTAATTCGTGTGGAGCTGC 60.725 50.000 0.00 0.00 0.00 5.25
3694 5160 2.472695 TTAATTCGTGTGGAGCTGCT 57.527 45.000 6.82 0.00 0.00 4.24
3695 5161 2.472695 TAATTCGTGTGGAGCTGCTT 57.527 45.000 6.82 0.00 0.00 3.91
3696 5162 1.609208 AATTCGTGTGGAGCTGCTTT 58.391 45.000 6.82 0.00 0.00 3.51
3697 5163 2.472695 ATTCGTGTGGAGCTGCTTTA 57.527 45.000 6.82 0.00 0.00 1.85
3698 5164 1.795768 TTCGTGTGGAGCTGCTTTAG 58.204 50.000 6.82 0.00 0.00 1.85
3699 5165 0.966179 TCGTGTGGAGCTGCTTTAGA 59.034 50.000 6.82 0.00 0.00 2.10
3700 5166 1.067565 TCGTGTGGAGCTGCTTTAGAG 60.068 52.381 6.82 0.00 0.00 2.43
3701 5167 1.067565 CGTGTGGAGCTGCTTTAGAGA 60.068 52.381 6.82 0.00 0.00 3.10
3702 5168 2.615869 GTGTGGAGCTGCTTTAGAGAG 58.384 52.381 6.82 0.00 0.00 3.20
3703 5169 1.552337 TGTGGAGCTGCTTTAGAGAGG 59.448 52.381 6.82 0.00 0.00 3.69
3704 5170 1.552792 GTGGAGCTGCTTTAGAGAGGT 59.447 52.381 6.82 0.00 0.00 3.85
3705 5171 2.761208 GTGGAGCTGCTTTAGAGAGGTA 59.239 50.000 6.82 0.00 0.00 3.08
3706 5172 3.027412 TGGAGCTGCTTTAGAGAGGTAG 58.973 50.000 6.82 0.00 0.00 3.18
3707 5173 3.028130 GGAGCTGCTTTAGAGAGGTAGT 58.972 50.000 2.53 0.00 0.00 2.73
3708 5174 3.181480 GGAGCTGCTTTAGAGAGGTAGTG 60.181 52.174 2.53 0.00 0.00 2.74
3709 5175 2.763448 AGCTGCTTTAGAGAGGTAGTGG 59.237 50.000 0.00 0.00 0.00 4.00
3710 5176 2.159028 GCTGCTTTAGAGAGGTAGTGGG 60.159 54.545 0.00 0.00 0.00 4.61
3711 5177 3.366396 CTGCTTTAGAGAGGTAGTGGGA 58.634 50.000 0.00 0.00 0.00 4.37
3712 5178 3.366396 TGCTTTAGAGAGGTAGTGGGAG 58.634 50.000 0.00 0.00 0.00 4.30
3713 5179 2.696187 GCTTTAGAGAGGTAGTGGGAGG 59.304 54.545 0.00 0.00 0.00 4.30
3714 5180 3.882515 GCTTTAGAGAGGTAGTGGGAGGT 60.883 52.174 0.00 0.00 0.00 3.85
3715 5181 3.383698 TTAGAGAGGTAGTGGGAGGTG 57.616 52.381 0.00 0.00 0.00 4.00
3716 5182 1.383963 AGAGAGGTAGTGGGAGGTGA 58.616 55.000 0.00 0.00 0.00 4.02
3717 5183 1.933765 AGAGAGGTAGTGGGAGGTGAT 59.066 52.381 0.00 0.00 0.00 3.06
3718 5184 2.316372 AGAGAGGTAGTGGGAGGTGATT 59.684 50.000 0.00 0.00 0.00 2.57
3719 5185 2.432510 GAGAGGTAGTGGGAGGTGATTG 59.567 54.545 0.00 0.00 0.00 2.67
3720 5186 1.486726 GAGGTAGTGGGAGGTGATTGG 59.513 57.143 0.00 0.00 0.00 3.16
3721 5187 1.203440 AGGTAGTGGGAGGTGATTGGT 60.203 52.381 0.00 0.00 0.00 3.67
3722 5188 1.065418 GGTAGTGGGAGGTGATTGGTG 60.065 57.143 0.00 0.00 0.00 4.17
3723 5189 0.618458 TAGTGGGAGGTGATTGGTGC 59.382 55.000 0.00 0.00 0.00 5.01
3724 5190 1.678970 GTGGGAGGTGATTGGTGCC 60.679 63.158 0.00 0.00 0.00 5.01
3725 5191 2.159490 TGGGAGGTGATTGGTGCCA 61.159 57.895 0.00 0.00 0.00 4.92
3726 5192 1.678970 GGGAGGTGATTGGTGCCAC 60.679 63.158 0.00 0.00 0.00 5.01
3727 5193 1.074775 GGAGGTGATTGGTGCCACA 59.925 57.895 0.00 0.00 35.13 4.17
3728 5194 1.244019 GGAGGTGATTGGTGCCACAC 61.244 60.000 0.00 4.06 35.13 3.82
3738 5204 1.739667 GTGCCACACCAACTTTCCC 59.260 57.895 0.00 0.00 0.00 3.97
3739 5205 1.826054 TGCCACACCAACTTTCCCG 60.826 57.895 0.00 0.00 0.00 5.14
3740 5206 1.527380 GCCACACCAACTTTCCCGA 60.527 57.895 0.00 0.00 0.00 5.14
3741 5207 1.792118 GCCACACCAACTTTCCCGAC 61.792 60.000 0.00 0.00 0.00 4.79
3742 5208 1.170290 CCACACCAACTTTCCCGACC 61.170 60.000 0.00 0.00 0.00 4.79
3743 5209 0.179029 CACACCAACTTTCCCGACCT 60.179 55.000 0.00 0.00 0.00 3.85
3744 5210 0.549469 ACACCAACTTTCCCGACCTT 59.451 50.000 0.00 0.00 0.00 3.50
3745 5211 1.064240 ACACCAACTTTCCCGACCTTT 60.064 47.619 0.00 0.00 0.00 3.11
3746 5212 2.028876 CACCAACTTTCCCGACCTTTT 58.971 47.619 0.00 0.00 0.00 2.27
3747 5213 2.429250 CACCAACTTTCCCGACCTTTTT 59.571 45.455 0.00 0.00 0.00 1.94
3748 5214 2.429250 ACCAACTTTCCCGACCTTTTTG 59.571 45.455 0.00 0.00 0.00 2.44
3749 5215 2.469826 CAACTTTCCCGACCTTTTTGC 58.530 47.619 0.00 0.00 0.00 3.68
3750 5216 1.037493 ACTTTCCCGACCTTTTTGCC 58.963 50.000 0.00 0.00 0.00 4.52
3751 5217 0.039527 CTTTCCCGACCTTTTTGCCG 60.040 55.000 0.00 0.00 0.00 5.69
3752 5218 0.465824 TTTCCCGACCTTTTTGCCGA 60.466 50.000 0.00 0.00 0.00 5.54
3753 5219 0.465824 TTCCCGACCTTTTTGCCGAA 60.466 50.000 0.00 0.00 0.00 4.30
3754 5220 1.167781 TCCCGACCTTTTTGCCGAAC 61.168 55.000 0.00 0.00 0.00 3.95
3755 5221 1.170290 CCCGACCTTTTTGCCGAACT 61.170 55.000 0.00 0.00 0.00 3.01
3756 5222 0.666374 CCGACCTTTTTGCCGAACTT 59.334 50.000 0.00 0.00 0.00 2.66
3757 5223 1.066454 CCGACCTTTTTGCCGAACTTT 59.934 47.619 0.00 0.00 0.00 2.66
3758 5224 2.291190 CCGACCTTTTTGCCGAACTTTA 59.709 45.455 0.00 0.00 0.00 1.85
3759 5225 3.551551 CGACCTTTTTGCCGAACTTTAG 58.448 45.455 0.00 0.00 0.00 1.85
3760 5226 3.249080 CGACCTTTTTGCCGAACTTTAGA 59.751 43.478 0.00 0.00 0.00 2.10
3761 5227 4.260866 CGACCTTTTTGCCGAACTTTAGAA 60.261 41.667 0.00 0.00 0.00 2.10
3762 5228 4.928601 ACCTTTTTGCCGAACTTTAGAAC 58.071 39.130 0.00 0.00 0.00 3.01
3763 5229 4.643334 ACCTTTTTGCCGAACTTTAGAACT 59.357 37.500 0.00 0.00 0.00 3.01
3764 5230 5.126545 ACCTTTTTGCCGAACTTTAGAACTT 59.873 36.000 0.00 0.00 0.00 2.66
3765 5231 5.685954 CCTTTTTGCCGAACTTTAGAACTTC 59.314 40.000 0.00 0.00 0.00 3.01
3766 5232 4.823790 TTTGCCGAACTTTAGAACTTCC 57.176 40.909 0.00 0.00 0.00 3.46
3767 5233 2.774687 TGCCGAACTTTAGAACTTCCC 58.225 47.619 0.00 0.00 0.00 3.97
3768 5234 2.082231 GCCGAACTTTAGAACTTCCCC 58.918 52.381 0.00 0.00 0.00 4.81
3769 5235 2.708051 CCGAACTTTAGAACTTCCCCC 58.292 52.381 0.00 0.00 0.00 5.40
3770 5236 2.305052 CCGAACTTTAGAACTTCCCCCT 59.695 50.000 0.00 0.00 0.00 4.79
3771 5237 3.335579 CGAACTTTAGAACTTCCCCCTG 58.664 50.000 0.00 0.00 0.00 4.45
3772 5238 2.881111 ACTTTAGAACTTCCCCCTGC 57.119 50.000 0.00 0.00 0.00 4.85
3773 5239 1.354705 ACTTTAGAACTTCCCCCTGCC 59.645 52.381 0.00 0.00 0.00 4.85
3774 5240 0.702316 TTTAGAACTTCCCCCTGCCC 59.298 55.000 0.00 0.00 0.00 5.36
3775 5241 0.178843 TTAGAACTTCCCCCTGCCCT 60.179 55.000 0.00 0.00 0.00 5.19
3776 5242 0.620700 TAGAACTTCCCCCTGCCCTC 60.621 60.000 0.00 0.00 0.00 4.30
3777 5243 1.925972 GAACTTCCCCCTGCCCTCT 60.926 63.158 0.00 0.00 0.00 3.69
3778 5244 1.466186 AACTTCCCCCTGCCCTCTT 60.466 57.895 0.00 0.00 0.00 2.85
3779 5245 1.793820 AACTTCCCCCTGCCCTCTTG 61.794 60.000 0.00 0.00 0.00 3.02
3780 5246 3.651980 CTTCCCCCTGCCCTCTTGC 62.652 68.421 0.00 0.00 0.00 4.01
3783 5249 4.748144 CCCCTGCCCTCTTGCCAC 62.748 72.222 0.00 0.00 0.00 5.01
3784 5250 3.970410 CCCTGCCCTCTTGCCACA 61.970 66.667 0.00 0.00 0.00 4.17
3785 5251 2.357836 CCTGCCCTCTTGCCACAT 59.642 61.111 0.00 0.00 0.00 3.21
3786 5252 1.304713 CCTGCCCTCTTGCCACATT 60.305 57.895 0.00 0.00 0.00 2.71
3787 5253 0.034186 CCTGCCCTCTTGCCACATTA 60.034 55.000 0.00 0.00 0.00 1.90
3788 5254 1.386533 CTGCCCTCTTGCCACATTAG 58.613 55.000 0.00 0.00 0.00 1.73
3789 5255 0.034186 TGCCCTCTTGCCACATTAGG 60.034 55.000 0.00 0.00 0.00 2.69
3790 5256 0.034089 GCCCTCTTGCCACATTAGGT 60.034 55.000 0.00 0.00 0.00 3.08
3802 5268 4.627611 CACATTAGGTGGCTTGAGATTG 57.372 45.455 0.00 0.00 44.04 2.67
3803 5269 3.379372 CACATTAGGTGGCTTGAGATTGG 59.621 47.826 0.00 0.00 44.04 3.16
3804 5270 2.806945 TTAGGTGGCTTGAGATTGGG 57.193 50.000 0.00 0.00 0.00 4.12
3805 5271 0.918983 TAGGTGGCTTGAGATTGGGG 59.081 55.000 0.00 0.00 0.00 4.96
3806 5272 2.054453 GGTGGCTTGAGATTGGGGC 61.054 63.158 0.00 0.00 0.00 5.80
3807 5273 1.304381 GTGGCTTGAGATTGGGGCA 60.304 57.895 0.00 0.00 0.00 5.36
3808 5274 1.304381 TGGCTTGAGATTGGGGCAC 60.304 57.895 0.00 0.00 0.00 5.01
3809 5275 1.000396 GGCTTGAGATTGGGGCACT 60.000 57.895 0.00 0.00 0.00 4.40
3810 5276 1.034292 GGCTTGAGATTGGGGCACTC 61.034 60.000 0.00 0.00 0.00 3.51
3811 5277 1.372087 GCTTGAGATTGGGGCACTCG 61.372 60.000 0.00 0.00 33.93 4.18
3812 5278 1.372087 CTTGAGATTGGGGCACTCGC 61.372 60.000 0.00 0.00 33.93 5.03
3822 5288 4.459089 GCACTCGCCTGGACCCTC 62.459 72.222 0.00 0.00 0.00 4.30
3823 5289 2.681778 CACTCGCCTGGACCCTCT 60.682 66.667 0.00 0.00 0.00 3.69
3824 5290 2.681778 ACTCGCCTGGACCCTCTG 60.682 66.667 0.00 0.00 0.00 3.35
3825 5291 3.465403 CTCGCCTGGACCCTCTGG 61.465 72.222 0.00 0.00 37.80 3.86
3826 5292 3.965026 CTCGCCTGGACCCTCTGGA 62.965 68.421 0.00 0.00 34.81 3.86
3827 5293 3.775654 CGCCTGGACCCTCTGGAC 61.776 72.222 0.00 0.00 34.81 4.02
3828 5294 3.775654 GCCTGGACCCTCTGGACG 61.776 72.222 0.00 0.00 34.81 4.79
3829 5295 2.037367 CCTGGACCCTCTGGACGA 59.963 66.667 0.00 0.00 34.81 4.20
3830 5296 1.381872 CCTGGACCCTCTGGACGAT 60.382 63.158 0.00 0.00 34.81 3.73
3831 5297 0.978146 CCTGGACCCTCTGGACGATT 60.978 60.000 0.00 0.00 34.81 3.34
3832 5298 0.461961 CTGGACCCTCTGGACGATTC 59.538 60.000 0.00 0.00 34.81 2.52
3833 5299 1.320344 TGGACCCTCTGGACGATTCG 61.320 60.000 4.14 4.14 34.81 3.34
3834 5300 1.227002 GACCCTCTGGACGATTCGC 60.227 63.158 5.86 0.00 34.81 4.70
3835 5301 1.945354 GACCCTCTGGACGATTCGCA 61.945 60.000 5.86 0.00 34.81 5.10
3836 5302 1.218047 CCCTCTGGACGATTCGCAA 59.782 57.895 5.86 0.00 0.00 4.85
3837 5303 0.179073 CCCTCTGGACGATTCGCAAT 60.179 55.000 5.86 0.00 0.00 3.56
3838 5304 1.068588 CCCTCTGGACGATTCGCAATA 59.931 52.381 5.86 0.00 0.00 1.90
3839 5305 2.483013 CCCTCTGGACGATTCGCAATAA 60.483 50.000 5.86 0.00 0.00 1.40
3840 5306 2.797156 CCTCTGGACGATTCGCAATAAG 59.203 50.000 5.86 0.00 0.00 1.73
3841 5307 2.201732 TCTGGACGATTCGCAATAAGC 58.798 47.619 5.86 0.00 40.87 3.09
3842 5308 2.159099 TCTGGACGATTCGCAATAAGCT 60.159 45.455 5.86 0.00 42.61 3.74
3843 5309 2.609459 CTGGACGATTCGCAATAAGCTT 59.391 45.455 3.48 3.48 42.61 3.74
3844 5310 2.351418 TGGACGATTCGCAATAAGCTTG 59.649 45.455 9.86 0.00 42.61 4.01
3845 5311 2.351726 GGACGATTCGCAATAAGCTTGT 59.648 45.455 9.86 0.00 42.61 3.16
3846 5312 3.345714 GACGATTCGCAATAAGCTTGTG 58.654 45.455 9.86 8.40 42.61 3.33
3847 5313 3.000041 ACGATTCGCAATAAGCTTGTGA 59.000 40.909 9.86 2.15 42.61 3.58
3848 5314 3.623060 ACGATTCGCAATAAGCTTGTGAT 59.377 39.130 9.86 0.00 42.61 3.06
3849 5315 4.094887 ACGATTCGCAATAAGCTTGTGATT 59.905 37.500 9.86 1.85 42.61 2.57
3850 5316 4.667948 CGATTCGCAATAAGCTTGTGATTC 59.332 41.667 9.86 10.16 42.61 2.52
3851 5317 5.565592 ATTCGCAATAAGCTTGTGATTCA 57.434 34.783 9.86 0.00 42.61 2.57
3852 5318 4.604843 TCGCAATAAGCTTGTGATTCAG 57.395 40.909 9.86 0.00 42.61 3.02
3853 5319 3.103738 CGCAATAAGCTTGTGATTCAGC 58.896 45.455 9.86 1.34 42.61 4.26
3854 5320 3.103738 GCAATAAGCTTGTGATTCAGCG 58.896 45.455 9.86 0.00 41.15 5.18
3855 5321 3.103738 CAATAAGCTTGTGATTCAGCGC 58.896 45.455 9.86 0.00 0.00 5.92
3856 5322 1.807139 TAAGCTTGTGATTCAGCGCA 58.193 45.000 11.47 0.00 0.00 6.09
3857 5323 1.171308 AAGCTTGTGATTCAGCGCAT 58.829 45.000 11.47 0.00 0.00 4.73
3858 5324 0.731417 AGCTTGTGATTCAGCGCATC 59.269 50.000 11.47 4.46 0.00 3.91
3859 5325 0.248377 GCTTGTGATTCAGCGCATCC 60.248 55.000 11.47 0.00 0.00 3.51
3860 5326 1.376543 CTTGTGATTCAGCGCATCCT 58.623 50.000 11.47 0.00 0.00 3.24
3861 5327 1.741706 CTTGTGATTCAGCGCATCCTT 59.258 47.619 11.47 0.00 0.00 3.36
3862 5328 1.372582 TGTGATTCAGCGCATCCTTC 58.627 50.000 11.47 0.00 0.00 3.46
3863 5329 1.065926 TGTGATTCAGCGCATCCTTCT 60.066 47.619 11.47 0.00 0.00 2.85
3864 5330 2.012673 GTGATTCAGCGCATCCTTCTT 58.987 47.619 11.47 0.00 0.00 2.52
3865 5331 2.031437 GTGATTCAGCGCATCCTTCTTC 59.969 50.000 11.47 0.00 0.00 2.87
3866 5332 1.260033 GATTCAGCGCATCCTTCTTCG 59.740 52.381 11.47 0.00 0.00 3.79
3867 5333 0.246360 TTCAGCGCATCCTTCTTCGA 59.754 50.000 11.47 0.00 0.00 3.71
3868 5334 0.458543 TCAGCGCATCCTTCTTCGAC 60.459 55.000 11.47 0.00 0.00 4.20
3869 5335 1.517257 AGCGCATCCTTCTTCGACG 60.517 57.895 11.47 0.00 0.00 5.12
3870 5336 2.517450 GCGCATCCTTCTTCGACGG 61.517 63.158 0.30 0.00 0.00 4.79
3871 5337 1.878522 CGCATCCTTCTTCGACGGG 60.879 63.158 0.00 0.00 0.00 5.28
3872 5338 2.174319 GCATCCTTCTTCGACGGGC 61.174 63.158 0.00 0.00 0.00 6.13
3873 5339 1.517832 CATCCTTCTTCGACGGGCT 59.482 57.895 0.00 0.00 0.00 5.19
3874 5340 0.744874 CATCCTTCTTCGACGGGCTA 59.255 55.000 0.00 0.00 0.00 3.93
3875 5341 0.745468 ATCCTTCTTCGACGGGCTAC 59.255 55.000 0.00 0.00 0.00 3.58
3876 5342 0.323178 TCCTTCTTCGACGGGCTACT 60.323 55.000 0.00 0.00 0.00 2.57
3877 5343 0.179134 CCTTCTTCGACGGGCTACTG 60.179 60.000 0.00 0.00 0.00 2.74
3878 5344 0.809385 CTTCTTCGACGGGCTACTGA 59.191 55.000 0.00 0.00 0.00 3.41
3879 5345 0.524862 TTCTTCGACGGGCTACTGAC 59.475 55.000 0.00 0.00 0.00 3.51
3880 5346 1.226323 CTTCGACGGGCTACTGACG 60.226 63.158 0.00 0.00 41.41 4.35
3881 5347 3.332493 TTCGACGGGCTACTGACGC 62.332 63.158 0.00 0.00 40.19 5.19
3882 5348 3.812019 CGACGGGCTACTGACGCT 61.812 66.667 0.00 0.00 34.70 5.07
3883 5349 2.102553 GACGGGCTACTGACGCTC 59.897 66.667 0.00 0.00 0.00 5.03
3884 5350 2.361357 ACGGGCTACTGACGCTCT 60.361 61.111 0.00 0.00 0.00 4.09
3885 5351 1.935327 GACGGGCTACTGACGCTCTT 61.935 60.000 0.00 0.00 0.00 2.85
3886 5352 1.215647 CGGGCTACTGACGCTCTTT 59.784 57.895 0.00 0.00 0.00 2.52
3887 5353 0.389948 CGGGCTACTGACGCTCTTTT 60.390 55.000 0.00 0.00 0.00 2.27
3888 5354 1.360820 GGGCTACTGACGCTCTTTTC 58.639 55.000 0.00 0.00 0.00 2.29
3889 5355 1.337823 GGGCTACTGACGCTCTTTTCA 60.338 52.381 0.00 0.00 0.00 2.69
3890 5356 2.413837 GGCTACTGACGCTCTTTTCAA 58.586 47.619 0.00 0.00 0.00 2.69
3891 5357 2.806244 GGCTACTGACGCTCTTTTCAAA 59.194 45.455 0.00 0.00 0.00 2.69
3892 5358 3.364068 GGCTACTGACGCTCTTTTCAAAC 60.364 47.826 0.00 0.00 0.00 2.93
3893 5359 3.495001 GCTACTGACGCTCTTTTCAAACT 59.505 43.478 0.00 0.00 0.00 2.66
3894 5360 3.951979 ACTGACGCTCTTTTCAAACTG 57.048 42.857 0.00 0.00 0.00 3.16
3895 5361 3.270877 ACTGACGCTCTTTTCAAACTGT 58.729 40.909 0.00 0.00 0.00 3.55
3896 5362 3.309954 ACTGACGCTCTTTTCAAACTGTC 59.690 43.478 0.00 0.00 0.00 3.51
3897 5363 3.531538 TGACGCTCTTTTCAAACTGTCT 58.468 40.909 0.00 0.00 0.00 3.41
3898 5364 3.309682 TGACGCTCTTTTCAAACTGTCTG 59.690 43.478 0.00 0.00 0.00 3.51
3899 5365 2.614057 ACGCTCTTTTCAAACTGTCTGG 59.386 45.455 0.00 0.00 0.00 3.86
3900 5366 2.614057 CGCTCTTTTCAAACTGTCTGGT 59.386 45.455 0.00 0.00 0.00 4.00
3901 5367 3.065371 CGCTCTTTTCAAACTGTCTGGTT 59.935 43.478 0.00 0.00 0.00 3.67
3902 5368 4.438744 CGCTCTTTTCAAACTGTCTGGTTT 60.439 41.667 0.00 0.00 39.62 3.27
3903 5369 5.037385 GCTCTTTTCAAACTGTCTGGTTTC 58.963 41.667 0.00 0.00 37.32 2.78
3904 5370 5.163612 GCTCTTTTCAAACTGTCTGGTTTCT 60.164 40.000 0.00 0.00 37.32 2.52
3905 5371 6.625960 GCTCTTTTCAAACTGTCTGGTTTCTT 60.626 38.462 0.00 0.00 37.32 2.52
3906 5372 6.620678 TCTTTTCAAACTGTCTGGTTTCTTG 58.379 36.000 0.00 0.00 37.32 3.02
3907 5373 4.370364 TTCAAACTGTCTGGTTTCTTGC 57.630 40.909 0.00 0.00 37.32 4.01
3908 5374 3.351740 TCAAACTGTCTGGTTTCTTGCA 58.648 40.909 0.00 0.00 37.32 4.08
3909 5375 3.378112 TCAAACTGTCTGGTTTCTTGCAG 59.622 43.478 0.00 0.00 37.32 4.41
3910 5376 1.312815 ACTGTCTGGTTTCTTGCAGC 58.687 50.000 0.00 0.00 0.00 5.25
3911 5377 1.133976 ACTGTCTGGTTTCTTGCAGCT 60.134 47.619 0.00 0.00 0.00 4.24
3912 5378 1.952296 CTGTCTGGTTTCTTGCAGCTT 59.048 47.619 0.00 0.00 0.00 3.74
3913 5379 2.360165 CTGTCTGGTTTCTTGCAGCTTT 59.640 45.455 0.00 0.00 0.00 3.51
3914 5380 2.099592 TGTCTGGTTTCTTGCAGCTTTG 59.900 45.455 0.00 0.00 0.00 2.77
3915 5381 1.682854 TCTGGTTTCTTGCAGCTTTGG 59.317 47.619 0.00 0.00 0.00 3.28
3916 5382 0.104671 TGGTTTCTTGCAGCTTTGGC 59.895 50.000 0.00 0.00 39.06 4.52
3917 5383 0.940991 GGTTTCTTGCAGCTTTGGCG 60.941 55.000 0.00 0.00 44.37 5.69
3918 5384 0.940991 GTTTCTTGCAGCTTTGGCGG 60.941 55.000 0.00 0.00 44.37 6.13
3919 5385 1.391157 TTTCTTGCAGCTTTGGCGGT 61.391 50.000 0.00 0.00 44.37 5.68
3920 5386 1.795170 TTCTTGCAGCTTTGGCGGTC 61.795 55.000 0.00 0.00 44.37 4.79
3921 5387 3.599792 CTTGCAGCTTTGGCGGTCG 62.600 63.158 0.00 0.00 44.37 4.79
3924 5390 3.357079 CAGCTTTGGCGGTCGCTT 61.357 61.111 15.04 0.00 44.37 4.68
3925 5391 2.032634 CAGCTTTGGCGGTCGCTTA 61.033 57.895 15.04 2.32 44.37 3.09
3926 5392 1.741770 AGCTTTGGCGGTCGCTTAG 60.742 57.895 15.04 10.46 44.37 2.18
3927 5393 2.785258 CTTTGGCGGTCGCTTAGC 59.215 61.111 15.04 0.00 41.60 3.09
3938 5404 4.157120 GCTTAGCGGCCTTCGGGA 62.157 66.667 0.00 0.00 39.69 5.14
3939 5405 2.202892 CTTAGCGGCCTTCGGGAC 60.203 66.667 0.00 0.00 40.57 4.46
3940 5406 3.735037 CTTAGCGGCCTTCGGGACC 62.735 68.421 0.00 0.00 41.02 4.46
3959 5425 4.162690 GGACGCCATCTCCGCCTT 62.163 66.667 0.00 0.00 0.00 4.35
3960 5426 2.586357 GACGCCATCTCCGCCTTC 60.586 66.667 0.00 0.00 0.00 3.46
3961 5427 3.371097 GACGCCATCTCCGCCTTCA 62.371 63.158 0.00 0.00 0.00 3.02
3962 5428 2.109799 CGCCATCTCCGCCTTCAT 59.890 61.111 0.00 0.00 0.00 2.57
3963 5429 1.958205 CGCCATCTCCGCCTTCATC 60.958 63.158 0.00 0.00 0.00 2.92
3964 5430 1.958205 GCCATCTCCGCCTTCATCG 60.958 63.158 0.00 0.00 0.00 3.84
3965 5431 1.958205 CCATCTCCGCCTTCATCGC 60.958 63.158 0.00 0.00 0.00 4.58
3966 5432 1.958205 CATCTCCGCCTTCATCGCC 60.958 63.158 0.00 0.00 0.00 5.54
3967 5433 3.506059 ATCTCCGCCTTCATCGCCG 62.506 63.158 0.00 0.00 0.00 6.46
3968 5434 4.207281 CTCCGCCTTCATCGCCGA 62.207 66.667 0.00 0.00 0.00 5.54
3969 5435 4.508128 TCCGCCTTCATCGCCGAC 62.508 66.667 0.00 0.00 0.00 4.79
3971 5437 4.514577 CGCCTTCATCGCCGACCT 62.515 66.667 0.00 0.00 0.00 3.85
3972 5438 2.125106 GCCTTCATCGCCGACCTT 60.125 61.111 0.00 0.00 0.00 3.50
3973 5439 2.174319 GCCTTCATCGCCGACCTTC 61.174 63.158 0.00 0.00 0.00 3.46
3974 5440 1.878522 CCTTCATCGCCGACCTTCG 60.879 63.158 0.00 0.00 40.07 3.79
3975 5441 2.508439 TTCATCGCCGACCTTCGC 60.508 61.111 0.00 0.00 38.82 4.70
3976 5442 2.890847 CTTCATCGCCGACCTTCGCT 62.891 60.000 0.00 0.00 38.82 4.93
3977 5443 2.884087 TTCATCGCCGACCTTCGCTC 62.884 60.000 0.00 0.00 38.82 5.03
3978 5444 4.554363 ATCGCCGACCTTCGCTCG 62.554 66.667 0.00 0.00 38.82 5.03
3980 5446 4.554363 CGCCGACCTTCGCTCGAT 62.554 66.667 0.00 0.00 38.82 3.59
3981 5447 2.956964 GCCGACCTTCGCTCGATG 60.957 66.667 0.00 0.00 38.82 3.84
3982 5448 2.278857 CCGACCTTCGCTCGATGG 60.279 66.667 18.73 18.73 42.88 3.51
3983 5449 2.956964 CGACCTTCGCTCGATGGC 60.957 66.667 19.83 13.26 41.49 4.40
3984 5450 2.586357 GACCTTCGCTCGATGGCC 60.586 66.667 19.83 8.95 41.49 5.36
3985 5451 3.077556 ACCTTCGCTCGATGGCCT 61.078 61.111 19.83 3.53 41.49 5.19
3986 5452 2.187946 CCTTCGCTCGATGGCCTT 59.812 61.111 3.32 0.00 33.63 4.35
3987 5453 1.450312 CCTTCGCTCGATGGCCTTT 60.450 57.895 3.32 0.00 33.63 3.11
3988 5454 1.432270 CCTTCGCTCGATGGCCTTTC 61.432 60.000 3.32 0.00 33.63 2.62
3989 5455 1.756375 CTTCGCTCGATGGCCTTTCG 61.756 60.000 18.90 18.90 37.94 3.46
3990 5456 2.501223 TTCGCTCGATGGCCTTTCGT 62.501 55.000 22.39 0.00 37.82 3.85
3991 5457 2.517450 CGCTCGATGGCCTTTCGTC 61.517 63.158 22.39 16.03 37.82 4.20
3992 5458 1.153549 GCTCGATGGCCTTTCGTCT 60.154 57.895 22.39 0.00 37.82 4.18
3993 5459 1.424493 GCTCGATGGCCTTTCGTCTG 61.424 60.000 22.39 16.18 37.82 3.51
3994 5460 0.108615 CTCGATGGCCTTTCGTCTGT 60.109 55.000 22.39 0.00 37.82 3.41
3995 5461 0.108804 TCGATGGCCTTTCGTCTGTC 60.109 55.000 22.39 0.00 37.82 3.51
3996 5462 1.413767 CGATGGCCTTTCGTCTGTCG 61.414 60.000 17.31 0.02 41.41 4.35
3997 5463 1.696832 GATGGCCTTTCGTCTGTCGC 61.697 60.000 3.32 0.00 39.67 5.19
3998 5464 3.119096 GGCCTTTCGTCTGTCGCC 61.119 66.667 0.00 0.00 39.67 5.54
3999 5465 3.479269 GCCTTTCGTCTGTCGCCG 61.479 66.667 0.00 0.00 39.67 6.46
4000 5466 3.479269 CCTTTCGTCTGTCGCCGC 61.479 66.667 0.00 0.00 39.67 6.53
4001 5467 3.479269 CTTTCGTCTGTCGCCGCC 61.479 66.667 0.00 0.00 39.67 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 964 5.830000 ACTTTGTAAGGTGGTTTCAAGAC 57.170 39.130 0.00 0.00 28.33 3.01
76 1026 1.939082 CGAAGGGAGGAGGGAGAGGA 61.939 65.000 0.00 0.00 0.00 3.71
78 1028 2.131067 GCGAAGGGAGGAGGGAGAG 61.131 68.421 0.00 0.00 0.00 3.20
83 1033 0.391793 GTGAAAGCGAAGGGAGGAGG 60.392 60.000 0.00 0.00 0.00 4.30
114 1067 1.270826 GGCTGGAGTTTCAGGAAAAGC 59.729 52.381 7.36 7.36 35.43 3.51
122 1075 0.961019 GTTGCATGGCTGGAGTTTCA 59.039 50.000 0.00 0.00 0.00 2.69
123 1076 0.244721 GGTTGCATGGCTGGAGTTTC 59.755 55.000 0.00 0.00 0.00 2.78
129 1082 2.440796 ATCCGGTTGCATGGCTGG 60.441 61.111 0.00 5.27 0.00 4.85
145 1098 2.690881 TGGCTAACCCAGGGCGAT 60.691 61.111 4.91 0.00 39.18 4.58
151 1104 2.270352 TTTCTGTGTGGCTAACCCAG 57.730 50.000 0.00 0.00 46.54 4.45
165 1118 1.267806 ACTGCGACAGCCATTTTTCTG 59.732 47.619 6.74 0.00 44.33 3.02
169 1124 2.076863 GTCTACTGCGACAGCCATTTT 58.923 47.619 6.74 0.00 44.33 1.82
174 1129 1.797025 AAAAGTCTACTGCGACAGCC 58.203 50.000 6.74 0.00 44.33 4.85
200 1155 3.870419 CCTGCAGAAGAGCTTGTCTATTC 59.130 47.826 17.39 0.00 41.96 1.75
202 1157 2.419851 GCCTGCAGAAGAGCTTGTCTAT 60.420 50.000 17.39 0.00 32.65 1.98
203 1158 1.066573 GCCTGCAGAAGAGCTTGTCTA 60.067 52.381 17.39 0.00 32.65 2.59
210 1167 2.749441 GGGTGCCTGCAGAAGAGC 60.749 66.667 17.39 10.73 0.00 4.09
213 1170 1.898574 AAACGGGTGCCTGCAGAAG 60.899 57.895 17.39 0.00 0.00 2.85
217 1174 2.904866 GTCAAACGGGTGCCTGCA 60.905 61.111 0.00 0.00 0.00 4.41
249 1206 0.036306 ACGGTCCCAAACTGATGGAC 59.964 55.000 0.00 0.00 46.31 4.02
259 1216 3.943691 CGGGTTGGACGGTCCCAA 61.944 66.667 23.81 14.82 43.42 4.12
265 1222 2.435938 CCATGTCGGGTTGGACGG 60.436 66.667 0.00 0.00 39.83 4.79
267 1224 0.391263 GTCTCCATGTCGGGTTGGAC 60.391 60.000 0.00 0.00 37.10 4.02
324 1281 2.113139 CGCCCAACACCAAGGACT 59.887 61.111 0.00 0.00 0.00 3.85
338 1295 3.555967 AGGACATCCTCATCCGCC 58.444 61.111 0.00 0.00 44.77 6.13
358 1315 8.634444 AGCCTAGAGTTTTCTACATACTGTATG 58.366 37.037 22.76 22.76 37.25 2.39
362 1660 7.013846 AGCTAGCCTAGAGTTTTCTACATACTG 59.986 40.741 12.13 0.00 34.79 2.74
365 1663 7.997223 TGTAGCTAGCCTAGAGTTTTCTACATA 59.003 37.037 12.13 0.00 34.79 2.29
369 1667 7.899648 AATGTAGCTAGCCTAGAGTTTTCTA 57.100 36.000 12.13 0.00 34.79 2.10
386 1684 2.805671 TGCACCGCACATATAATGTAGC 59.194 45.455 0.00 0.00 42.70 3.58
387 1685 5.063438 GGTATGCACCGCACATATAATGTAG 59.937 44.000 0.00 0.00 43.04 2.74
389 1687 3.751175 GGTATGCACCGCACATATAATGT 59.249 43.478 0.00 0.00 43.04 2.71
390 1688 4.340894 GGTATGCACCGCACATATAATG 57.659 45.455 0.00 0.00 43.04 1.90
409 1707 3.978410 GAGGTGGTCCGGGCTAGGT 62.978 68.421 5.77 0.00 39.05 3.08
414 1712 2.595009 GAATCTGAGGTGGTCCGGGC 62.595 65.000 0.00 0.00 39.05 6.13
430 1728 3.181451 TGTGTTGGACTTCTCTGCTGAAT 60.181 43.478 0.00 0.00 0.00 2.57
440 1738 4.726416 CATATGCACTTGTGTTGGACTTC 58.274 43.478 0.00 0.00 0.00 3.01
475 1788 2.202932 CAATCCCGGCGTCCTCTG 60.203 66.667 6.01 0.00 0.00 3.35
480 1793 2.180204 CATGGTCAATCCCGGCGTC 61.180 63.158 6.01 0.00 34.77 5.19
484 1797 1.523711 CCGTCATGGTCAATCCCGG 60.524 63.158 0.00 0.00 32.75 5.73
502 1819 2.533266 ACGACTGGGTATGCATGATC 57.467 50.000 10.16 0.00 0.00 2.92
523 1844 6.485984 GGTGATAAGTCTGGATAGTCGTCTAA 59.514 42.308 0.00 0.00 0.00 2.10
524 1845 5.996513 GGTGATAAGTCTGGATAGTCGTCTA 59.003 44.000 0.00 0.00 0.00 2.59
528 1849 5.163550 TGTTGGTGATAAGTCTGGATAGTCG 60.164 44.000 0.00 0.00 0.00 4.18
535 1856 4.692625 CACTTCTGTTGGTGATAAGTCTGG 59.307 45.833 0.00 0.00 35.69 3.86
562 1906 2.869192 GCCAGAAAGTAGAGTAGCATGC 59.131 50.000 10.51 10.51 0.00 4.06
570 1914 8.498054 TTTGAATATCAAGCCAGAAAGTAGAG 57.502 34.615 0.00 0.00 37.70 2.43
608 1952 6.636562 TGTTATAATTCTCTCCTCCGAGAC 57.363 41.667 0.00 0.00 40.34 3.36
618 1968 7.817962 AGTAGCAACACGTTGTTATAATTCTCT 59.182 33.333 11.33 0.00 38.77 3.10
626 1976 4.141855 GCAAGTAGCAACACGTTGTTAT 57.858 40.909 11.33 1.66 38.77 1.89
641 1999 0.682852 ACGGCAACCACTAGCAAGTA 59.317 50.000 0.00 0.00 33.48 2.24
642 2000 0.602905 GACGGCAACCACTAGCAAGT 60.603 55.000 0.00 0.00 35.91 3.16
643 2001 0.320771 AGACGGCAACCACTAGCAAG 60.321 55.000 0.00 0.00 0.00 4.01
644 2002 0.970640 TAGACGGCAACCACTAGCAA 59.029 50.000 0.00 0.00 0.00 3.91
645 2003 0.970640 TTAGACGGCAACCACTAGCA 59.029 50.000 0.00 0.00 0.00 3.49
646 2004 2.088950 TTTAGACGGCAACCACTAGC 57.911 50.000 0.00 0.00 0.00 3.42
682 2040 4.137543 AGTCTGAACATCTTTGTGGAACC 58.862 43.478 0.00 0.00 35.83 3.62
683 2041 5.296780 TGAAGTCTGAACATCTTTGTGGAAC 59.703 40.000 0.00 0.00 35.83 3.62
689 2047 3.496130 ACGCTGAAGTCTGAACATCTTTG 59.504 43.478 0.00 0.00 0.00 2.77
784 2144 0.976641 AGACACATCACCATCCACGT 59.023 50.000 0.00 0.00 0.00 4.49
788 2148 2.012673 GCAAGAGACACATCACCATCC 58.987 52.381 0.00 0.00 0.00 3.51
800 2160 1.391826 GCTAAGTCGCAAGCAAGAGAC 59.608 52.381 4.53 4.53 38.63 3.36
854 2214 8.275040 ACTGCCCATGATTATTTACTAAGAAGT 58.725 33.333 0.00 0.00 39.91 3.01
855 2215 8.682936 ACTGCCCATGATTATTTACTAAGAAG 57.317 34.615 0.00 0.00 0.00 2.85
856 2216 8.902806 CAACTGCCCATGATTATTTACTAAGAA 58.097 33.333 0.00 0.00 0.00 2.52
858 2218 8.225603 ACAACTGCCCATGATTATTTACTAAG 57.774 34.615 0.00 0.00 0.00 2.18
865 2225 4.506758 GCAAACAACTGCCCATGATTATT 58.493 39.130 0.00 0.00 36.25 1.40
895 2265 1.076533 GTACTGCTGTATGTGCGCGT 61.077 55.000 8.43 0.00 0.00 6.01
896 2266 0.802222 AGTACTGCTGTATGTGCGCG 60.802 55.000 0.00 0.00 0.00 6.86
927 2300 2.429610 CAACTAGTACCGGTGTGGCTAT 59.570 50.000 19.93 0.00 43.94 2.97
928 2301 1.820519 CAACTAGTACCGGTGTGGCTA 59.179 52.381 19.93 12.80 43.94 3.93
929 2302 0.606604 CAACTAGTACCGGTGTGGCT 59.393 55.000 19.93 12.32 43.94 4.75
930 2303 0.319405 ACAACTAGTACCGGTGTGGC 59.681 55.000 19.93 4.69 43.94 5.01
933 2306 5.717119 CTGATAAACAACTAGTACCGGTGT 58.283 41.667 19.93 6.98 0.00 4.16
934 2307 4.565564 GCTGATAAACAACTAGTACCGGTG 59.434 45.833 19.93 1.91 0.00 4.94
935 2308 4.382362 GGCTGATAAACAACTAGTACCGGT 60.382 45.833 13.98 13.98 0.00 5.28
936 2309 4.117685 GGCTGATAAACAACTAGTACCGG 58.882 47.826 0.00 0.00 0.00 5.28
937 2310 4.565564 GTGGCTGATAAACAACTAGTACCG 59.434 45.833 0.00 0.00 0.00 4.02
938 2311 5.484715 TGTGGCTGATAAACAACTAGTACC 58.515 41.667 0.00 0.00 0.00 3.34
939 2312 7.429636 TTTGTGGCTGATAAACAACTAGTAC 57.570 36.000 0.00 0.00 33.73 2.73
940 2313 8.630054 ATTTTGTGGCTGATAAACAACTAGTA 57.370 30.769 0.00 0.00 33.73 1.82
942 2315 9.722056 GATATTTTGTGGCTGATAAACAACTAG 57.278 33.333 0.00 0.00 33.73 2.57
969 2342 5.825151 AGCTCTCTGGCAAGGAAAATATTAC 59.175 40.000 0.00 0.00 34.17 1.89
974 2347 2.040813 TGAGCTCTCTGGCAAGGAAAAT 59.959 45.455 16.19 0.00 34.17 1.82
989 2363 1.823041 GGAGCCATGCCTTGAGCTC 60.823 63.158 6.82 6.82 42.86 4.09
990 2364 2.274760 GGAGCCATGCCTTGAGCT 59.725 61.111 0.00 0.00 44.23 4.09
995 2374 3.801997 CCCTCGGAGCCATGCCTT 61.802 66.667 0.00 0.00 0.00 4.35
1032 2411 0.319728 CGAGGAGTGGGATGGCATAG 59.680 60.000 0.00 0.00 0.00 2.23
1033 2412 0.398522 ACGAGGAGTGGGATGGCATA 60.399 55.000 0.00 0.00 0.00 3.14
1058 2440 1.582968 GTTGTGGATGCAGCACAGG 59.417 57.895 3.51 0.00 0.00 4.00
1059 2441 1.174078 TGGTTGTGGATGCAGCACAG 61.174 55.000 3.51 0.00 0.00 3.66
1060 2442 1.152798 TGGTTGTGGATGCAGCACA 60.153 52.632 3.51 3.57 0.00 4.57
1061 2443 1.582968 CTGGTTGTGGATGCAGCAC 59.417 57.895 3.51 0.59 0.00 4.40
1209 2600 3.834799 CTCAGCGGGGTCGGGTAC 61.835 72.222 0.00 0.00 36.79 3.34
1278 2669 1.066587 GACGGAGAGGATGGCGAAG 59.933 63.158 0.00 0.00 0.00 3.79
1332 2723 3.172106 TTCTTGGTGGGGGCGACA 61.172 61.111 0.00 0.00 0.00 4.35
1545 2942 3.898123 AGTTGTTGAAGGCTCTACTCTCA 59.102 43.478 0.00 0.00 0.00 3.27
1552 2949 3.135530 AGAGTCAAGTTGTTGAAGGCTCT 59.864 43.478 2.11 0.00 44.44 4.09
1567 2964 2.621338 CTTGCCGCTGATAAGAGTCAA 58.379 47.619 0.00 0.00 0.00 3.18
1653 3050 1.041447 TCACCGGCTTAGCTACTCCC 61.041 60.000 0.00 0.00 0.00 4.30
1746 3143 2.817834 GTGCTGATTGCGCCGGTA 60.818 61.111 4.18 0.00 45.73 4.02
1795 3192 1.745489 CTGGAGCAGGGCCGTTTAC 60.745 63.158 0.00 0.00 0.00 2.01
1923 3320 6.966534 AGAAACAAAATGATGACAGTTCCT 57.033 33.333 0.00 0.00 33.12 3.36
1939 3336 4.214119 CCTGAATCTCTTGCGAAGAAACAA 59.786 41.667 0.00 0.00 37.02 2.83
2305 3726 7.559533 TGATGGCTTGCCATCTTTAAAGTATAA 59.440 33.333 38.12 20.94 44.75 0.98
2312 3733 3.444742 CAGTGATGGCTTGCCATCTTTAA 59.555 43.478 38.12 24.41 44.75 1.52
2314 3735 1.822990 CAGTGATGGCTTGCCATCTTT 59.177 47.619 38.12 28.28 44.75 2.52
2590 4020 1.557443 GCAAACACGTCCGTCAGAGG 61.557 60.000 0.00 0.00 36.41 3.69
2709 4139 2.031919 AGCGATCCGTTGTGCCAA 59.968 55.556 0.00 0.00 0.00 4.52
2744 4174 0.966370 GTAGTCACCCCGCAGTCTCT 60.966 60.000 0.00 0.00 0.00 3.10
2781 4211 0.394899 GCCCTAGCTTCAGCACCAAT 60.395 55.000 0.75 0.00 45.16 3.16
2964 4394 3.505464 AAACTCGTCGATAACTGAGGG 57.495 47.619 0.00 0.00 34.73 4.30
3038 4468 6.424176 TCTAAGAGAGACACGATAACACTG 57.576 41.667 0.00 0.00 0.00 3.66
3112 4575 8.764558 TCCCTAGCTAGTGTTTGAATACATTAA 58.235 33.333 19.31 0.00 0.00 1.40
3178 4643 9.151471 GTGAGTAATTAAACTGAGCATAGACAA 57.849 33.333 0.00 0.00 0.00 3.18
3187 4652 4.828829 ACCCCGTGAGTAATTAAACTGAG 58.171 43.478 0.00 0.00 0.00 3.35
3192 4657 8.810990 ATTCATTAACCCCGTGAGTAATTAAA 57.189 30.769 0.00 0.00 0.00 1.52
3320 4786 4.326504 AAGGAATTCCAAACAAGCACAG 57.673 40.909 26.22 0.00 38.89 3.66
3383 4849 3.793797 TGTTTCAGACAACTCACGAGA 57.206 42.857 0.00 0.00 34.69 4.04
3389 4855 3.119708 GGCCATGATGTTTCAGACAACTC 60.120 47.826 0.00 0.00 42.62 3.01
3399 4865 1.901833 GACCCAAAGGCCATGATGTTT 59.098 47.619 5.01 0.00 36.11 2.83
3437 4903 1.373497 GCTCCACGACTGACACCTG 60.373 63.158 0.00 0.00 0.00 4.00
3443 4909 1.686587 TCTTTCAAGCTCCACGACTGA 59.313 47.619 0.00 0.00 0.00 3.41
3450 4916 6.126863 TCCTAAGATTTCTTTCAAGCTCCA 57.873 37.500 0.00 0.00 37.40 3.86
3477 4943 5.608449 AGTCCTAAAAAGTTACAGCTTCGT 58.392 37.500 0.00 0.00 0.00 3.85
3485 4951 7.148356 CGATTTGGGGTAGTCCTAAAAAGTTAC 60.148 40.741 0.00 0.00 46.73 2.50
3486 4952 6.880529 CGATTTGGGGTAGTCCTAAAAAGTTA 59.119 38.462 0.00 0.00 46.73 2.24
3513 4979 6.503589 TCAAGTACAATTGATTTAACCCGG 57.496 37.500 13.59 0.00 34.31 5.73
3520 4986 7.490962 TCGACACTTCAAGTACAATTGATTT 57.509 32.000 13.59 0.29 38.90 2.17
3550 5016 5.571357 GTGGAATTGCAAAGTTTATGGTACG 59.429 40.000 1.71 0.00 0.00 3.67
3572 5038 3.191371 GTCCTTATGCTGACCCTTTTGTG 59.809 47.826 0.00 0.00 0.00 3.33
3593 5059 4.023193 CCTTTTGTGGTTCGAATAAGCAGT 60.023 41.667 0.00 0.00 0.00 4.40
3600 5066 2.235891 GGACCCTTTTGTGGTTCGAAT 58.764 47.619 0.00 0.00 35.85 3.34
3601 5067 1.682740 GGACCCTTTTGTGGTTCGAA 58.317 50.000 0.00 0.00 35.85 3.71
3602 5068 3.407443 GGACCCTTTTGTGGTTCGA 57.593 52.632 0.00 0.00 35.85 3.71
3604 5070 0.822121 AGCGGACCCTTTTGTGGTTC 60.822 55.000 0.00 0.00 35.85 3.62
3605 5071 1.106944 CAGCGGACCCTTTTGTGGTT 61.107 55.000 0.00 0.00 35.85 3.67
3606 5072 1.528309 CAGCGGACCCTTTTGTGGT 60.528 57.895 0.00 0.00 39.32 4.16
3607 5073 1.528309 ACAGCGGACCCTTTTGTGG 60.528 57.895 0.00 0.00 0.00 4.17
3608 5074 1.101049 ACACAGCGGACCCTTTTGTG 61.101 55.000 9.51 9.51 43.49 3.33
3609 5075 1.101049 CACACAGCGGACCCTTTTGT 61.101 55.000 0.00 0.00 0.00 2.83
3610 5076 1.654220 CACACAGCGGACCCTTTTG 59.346 57.895 0.00 0.00 0.00 2.44
3611 5077 1.528309 CCACACAGCGGACCCTTTT 60.528 57.895 0.00 0.00 0.00 2.27
3612 5078 1.412453 TACCACACAGCGGACCCTTT 61.412 55.000 0.00 0.00 0.00 3.11
3613 5079 1.198759 ATACCACACAGCGGACCCTT 61.199 55.000 0.00 0.00 0.00 3.95
3614 5080 1.612442 ATACCACACAGCGGACCCT 60.612 57.895 0.00 0.00 0.00 4.34
3615 5081 1.153429 GATACCACACAGCGGACCC 60.153 63.158 0.00 0.00 0.00 4.46
3616 5082 1.153429 GGATACCACACAGCGGACC 60.153 63.158 0.00 0.00 0.00 4.46
3617 5083 4.515404 GGATACCACACAGCGGAC 57.485 61.111 0.00 0.00 0.00 4.79
3629 5095 4.120589 GTGGTTCGAATCTTCAGGGATAC 58.879 47.826 10.29 0.00 0.00 2.24
3630 5096 3.772572 TGTGGTTCGAATCTTCAGGGATA 59.227 43.478 10.29 0.00 0.00 2.59
3631 5097 2.571653 TGTGGTTCGAATCTTCAGGGAT 59.428 45.455 10.29 0.00 0.00 3.85
3632 5098 1.974957 TGTGGTTCGAATCTTCAGGGA 59.025 47.619 10.29 0.00 0.00 4.20
3633 5099 2.472695 TGTGGTTCGAATCTTCAGGG 57.527 50.000 10.29 0.00 0.00 4.45
3634 5100 3.866651 AGATGTGGTTCGAATCTTCAGG 58.133 45.455 10.29 0.00 0.00 3.86
3638 5104 5.799213 AGAAGAAGATGTGGTTCGAATCTT 58.201 37.500 10.29 10.14 42.03 2.40
3639 5105 5.413309 AGAAGAAGATGTGGTTCGAATCT 57.587 39.130 10.29 0.89 31.99 2.40
3640 5106 4.568760 GGAGAAGAAGATGTGGTTCGAATC 59.431 45.833 0.00 0.00 0.00 2.52
3641 5107 4.223923 AGGAGAAGAAGATGTGGTTCGAAT 59.776 41.667 0.00 0.00 0.00 3.34
3642 5108 3.578716 AGGAGAAGAAGATGTGGTTCGAA 59.421 43.478 0.00 0.00 0.00 3.71
3643 5109 3.056536 CAGGAGAAGAAGATGTGGTTCGA 60.057 47.826 0.00 0.00 0.00 3.71
3644 5110 3.257393 CAGGAGAAGAAGATGTGGTTCG 58.743 50.000 0.00 0.00 0.00 3.95
3645 5111 3.999663 CACAGGAGAAGAAGATGTGGTTC 59.000 47.826 0.00 0.00 38.04 3.62
3646 5112 3.392616 ACACAGGAGAAGAAGATGTGGTT 59.607 43.478 8.33 0.00 44.27 3.67
3647 5113 2.975489 ACACAGGAGAAGAAGATGTGGT 59.025 45.455 8.33 0.00 44.27 4.16
3648 5114 3.244353 ACACACAGGAGAAGAAGATGTGG 60.244 47.826 8.33 0.92 44.27 4.17
3649 5115 3.993081 GACACACAGGAGAAGAAGATGTG 59.007 47.826 2.29 2.29 45.22 3.21
3650 5116 3.007398 GGACACACAGGAGAAGAAGATGT 59.993 47.826 0.00 0.00 0.00 3.06
3651 5117 3.594134 GGACACACAGGAGAAGAAGATG 58.406 50.000 0.00 0.00 0.00 2.90
3652 5118 2.232452 CGGACACACAGGAGAAGAAGAT 59.768 50.000 0.00 0.00 0.00 2.40
3653 5119 1.613925 CGGACACACAGGAGAAGAAGA 59.386 52.381 0.00 0.00 0.00 2.87
3654 5120 1.341531 ACGGACACACAGGAGAAGAAG 59.658 52.381 0.00 0.00 0.00 2.85
3655 5121 1.410004 ACGGACACACAGGAGAAGAA 58.590 50.000 0.00 0.00 0.00 2.52
3656 5122 1.410004 AACGGACACACAGGAGAAGA 58.590 50.000 0.00 0.00 0.00 2.87
3657 5123 2.240493 AAACGGACACACAGGAGAAG 57.760 50.000 0.00 0.00 0.00 2.85
3658 5124 3.823281 TTAAACGGACACACAGGAGAA 57.177 42.857 0.00 0.00 0.00 2.87
3659 5125 4.312443 GAATTAAACGGACACACAGGAGA 58.688 43.478 0.00 0.00 0.00 3.71
3660 5126 3.122948 CGAATTAAACGGACACACAGGAG 59.877 47.826 0.00 0.00 0.00 3.69
3661 5127 3.061322 CGAATTAAACGGACACACAGGA 58.939 45.455 0.00 0.00 0.00 3.86
3662 5128 2.803956 ACGAATTAAACGGACACACAGG 59.196 45.455 9.51 0.00 34.93 4.00
3663 5129 3.246699 ACACGAATTAAACGGACACACAG 59.753 43.478 9.51 0.00 34.93 3.66
3664 5130 3.001431 CACACGAATTAAACGGACACACA 59.999 43.478 9.51 0.00 34.93 3.72
3665 5131 3.537806 CACACGAATTAAACGGACACAC 58.462 45.455 9.51 0.00 34.93 3.82
3666 5132 2.544686 CCACACGAATTAAACGGACACA 59.455 45.455 9.51 0.00 34.93 3.72
3667 5133 2.801679 TCCACACGAATTAAACGGACAC 59.198 45.455 9.51 0.00 34.93 3.67
3668 5134 3.061322 CTCCACACGAATTAAACGGACA 58.939 45.455 9.51 0.00 34.93 4.02
3669 5135 2.159747 GCTCCACACGAATTAAACGGAC 60.160 50.000 9.51 0.00 34.93 4.79
3670 5136 2.070783 GCTCCACACGAATTAAACGGA 58.929 47.619 9.51 0.00 34.93 4.69
3671 5137 2.073816 AGCTCCACACGAATTAAACGG 58.926 47.619 9.51 2.84 34.93 4.44
3672 5138 2.724839 GCAGCTCCACACGAATTAAACG 60.725 50.000 0.00 4.34 0.00 3.60
3673 5139 2.484264 AGCAGCTCCACACGAATTAAAC 59.516 45.455 0.00 0.00 0.00 2.01
3674 5140 2.778299 AGCAGCTCCACACGAATTAAA 58.222 42.857 0.00 0.00 0.00 1.52
3675 5141 2.472695 AGCAGCTCCACACGAATTAA 57.527 45.000 0.00 0.00 0.00 1.40
3676 5142 2.472695 AAGCAGCTCCACACGAATTA 57.527 45.000 0.00 0.00 0.00 1.40
3677 5143 1.609208 AAAGCAGCTCCACACGAATT 58.391 45.000 0.00 0.00 0.00 2.17
3678 5144 2.028112 TCTAAAGCAGCTCCACACGAAT 60.028 45.455 0.00 0.00 0.00 3.34
3679 5145 1.343142 TCTAAAGCAGCTCCACACGAA 59.657 47.619 0.00 0.00 0.00 3.85
3680 5146 0.966179 TCTAAAGCAGCTCCACACGA 59.034 50.000 0.00 0.00 0.00 4.35
3681 5147 1.067565 TCTCTAAAGCAGCTCCACACG 60.068 52.381 0.00 0.00 0.00 4.49
3682 5148 2.615869 CTCTCTAAAGCAGCTCCACAC 58.384 52.381 0.00 0.00 0.00 3.82
3683 5149 1.552337 CCTCTCTAAAGCAGCTCCACA 59.448 52.381 0.00 0.00 0.00 4.17
3684 5150 1.552792 ACCTCTCTAAAGCAGCTCCAC 59.447 52.381 0.00 0.00 0.00 4.02
3685 5151 1.944177 ACCTCTCTAAAGCAGCTCCA 58.056 50.000 0.00 0.00 0.00 3.86
3686 5152 3.028130 ACTACCTCTCTAAAGCAGCTCC 58.972 50.000 0.00 0.00 0.00 4.70
3687 5153 3.181480 CCACTACCTCTCTAAAGCAGCTC 60.181 52.174 0.00 0.00 0.00 4.09
3688 5154 2.763448 CCACTACCTCTCTAAAGCAGCT 59.237 50.000 0.00 0.00 0.00 4.24
3689 5155 2.159028 CCCACTACCTCTCTAAAGCAGC 60.159 54.545 0.00 0.00 0.00 5.25
3690 5156 3.366396 TCCCACTACCTCTCTAAAGCAG 58.634 50.000 0.00 0.00 0.00 4.24
3691 5157 3.366396 CTCCCACTACCTCTCTAAAGCA 58.634 50.000 0.00 0.00 0.00 3.91
3692 5158 2.696187 CCTCCCACTACCTCTCTAAAGC 59.304 54.545 0.00 0.00 0.00 3.51
3693 5159 3.702045 CACCTCCCACTACCTCTCTAAAG 59.298 52.174 0.00 0.00 0.00 1.85
3694 5160 3.335786 TCACCTCCCACTACCTCTCTAAA 59.664 47.826 0.00 0.00 0.00 1.85
3695 5161 2.924302 TCACCTCCCACTACCTCTCTAA 59.076 50.000 0.00 0.00 0.00 2.10
3696 5162 2.570098 TCACCTCCCACTACCTCTCTA 58.430 52.381 0.00 0.00 0.00 2.43
3697 5163 1.383963 TCACCTCCCACTACCTCTCT 58.616 55.000 0.00 0.00 0.00 3.10
3698 5164 2.432510 CAATCACCTCCCACTACCTCTC 59.567 54.545 0.00 0.00 0.00 3.20
3699 5165 2.472029 CAATCACCTCCCACTACCTCT 58.528 52.381 0.00 0.00 0.00 3.69
3700 5166 1.486726 CCAATCACCTCCCACTACCTC 59.513 57.143 0.00 0.00 0.00 3.85
3701 5167 1.203440 ACCAATCACCTCCCACTACCT 60.203 52.381 0.00 0.00 0.00 3.08
3702 5168 1.065418 CACCAATCACCTCCCACTACC 60.065 57.143 0.00 0.00 0.00 3.18
3703 5169 1.679032 GCACCAATCACCTCCCACTAC 60.679 57.143 0.00 0.00 0.00 2.73
3704 5170 0.618458 GCACCAATCACCTCCCACTA 59.382 55.000 0.00 0.00 0.00 2.74
3705 5171 1.380302 GCACCAATCACCTCCCACT 59.620 57.895 0.00 0.00 0.00 4.00
3706 5172 1.678970 GGCACCAATCACCTCCCAC 60.679 63.158 0.00 0.00 0.00 4.61
3707 5173 2.159490 TGGCACCAATCACCTCCCA 61.159 57.895 0.00 0.00 0.00 4.37
3708 5174 1.678970 GTGGCACCAATCACCTCCC 60.679 63.158 6.29 0.00 0.00 4.30
3709 5175 1.074775 TGTGGCACCAATCACCTCC 59.925 57.895 16.26 0.00 33.29 4.30
3710 5176 2.257353 GTGTGGCACCAATCACCTC 58.743 57.895 16.26 0.00 33.29 3.85
3711 5177 4.500265 GTGTGGCACCAATCACCT 57.500 55.556 16.26 0.00 33.29 4.00
3720 5186 1.739667 GGGAAAGTTGGTGTGGCAC 59.260 57.895 11.55 11.55 0.00 5.01
3721 5187 1.826054 CGGGAAAGTTGGTGTGGCA 60.826 57.895 0.00 0.00 0.00 4.92
3722 5188 1.527380 TCGGGAAAGTTGGTGTGGC 60.527 57.895 0.00 0.00 0.00 5.01
3723 5189 1.170290 GGTCGGGAAAGTTGGTGTGG 61.170 60.000 0.00 0.00 0.00 4.17
3724 5190 0.179029 AGGTCGGGAAAGTTGGTGTG 60.179 55.000 0.00 0.00 0.00 3.82
3725 5191 0.549469 AAGGTCGGGAAAGTTGGTGT 59.451 50.000 0.00 0.00 0.00 4.16
3726 5192 1.687563 AAAGGTCGGGAAAGTTGGTG 58.312 50.000 0.00 0.00 0.00 4.17
3727 5193 2.429250 CAAAAAGGTCGGGAAAGTTGGT 59.571 45.455 0.00 0.00 0.00 3.67
3728 5194 2.801699 GCAAAAAGGTCGGGAAAGTTGG 60.802 50.000 0.00 0.00 0.00 3.77
3729 5195 2.469826 GCAAAAAGGTCGGGAAAGTTG 58.530 47.619 0.00 0.00 0.00 3.16
3730 5196 1.411246 GGCAAAAAGGTCGGGAAAGTT 59.589 47.619 0.00 0.00 0.00 2.66
3731 5197 1.037493 GGCAAAAAGGTCGGGAAAGT 58.963 50.000 0.00 0.00 0.00 2.66
3732 5198 0.039527 CGGCAAAAAGGTCGGGAAAG 60.040 55.000 0.00 0.00 30.96 2.62
3733 5199 0.465824 TCGGCAAAAAGGTCGGGAAA 60.466 50.000 0.00 0.00 36.35 3.13
3734 5200 0.465824 TTCGGCAAAAAGGTCGGGAA 60.466 50.000 0.00 0.00 36.35 3.97
3735 5201 1.148723 TTCGGCAAAAAGGTCGGGA 59.851 52.632 0.00 0.00 36.35 5.14
3736 5202 1.170290 AGTTCGGCAAAAAGGTCGGG 61.170 55.000 0.00 0.00 36.35 5.14
3737 5203 0.666374 AAGTTCGGCAAAAAGGTCGG 59.334 50.000 0.00 0.00 36.35 4.79
3738 5204 2.485266 AAAGTTCGGCAAAAAGGTCG 57.515 45.000 0.00 0.00 37.19 4.79
3739 5205 4.823790 TCTAAAGTTCGGCAAAAAGGTC 57.176 40.909 0.00 0.00 0.00 3.85
3740 5206 4.643334 AGTTCTAAAGTTCGGCAAAAAGGT 59.357 37.500 0.00 0.00 0.00 3.50
3741 5207 5.183014 AGTTCTAAAGTTCGGCAAAAAGG 57.817 39.130 0.00 0.00 0.00 3.11
3742 5208 5.685954 GGAAGTTCTAAAGTTCGGCAAAAAG 59.314 40.000 2.25 0.00 40.87 2.27
3743 5209 5.450826 GGGAAGTTCTAAAGTTCGGCAAAAA 60.451 40.000 2.25 0.00 40.87 1.94
3744 5210 4.037089 GGGAAGTTCTAAAGTTCGGCAAAA 59.963 41.667 2.25 0.00 40.87 2.44
3745 5211 3.566742 GGGAAGTTCTAAAGTTCGGCAAA 59.433 43.478 2.25 0.00 40.87 3.68
3746 5212 3.143728 GGGAAGTTCTAAAGTTCGGCAA 58.856 45.455 2.25 0.00 40.87 4.52
3747 5213 2.551504 GGGGAAGTTCTAAAGTTCGGCA 60.552 50.000 2.25 0.00 40.87 5.69
3748 5214 2.082231 GGGGAAGTTCTAAAGTTCGGC 58.918 52.381 2.25 0.00 40.87 5.54
3749 5215 2.305052 AGGGGGAAGTTCTAAAGTTCGG 59.695 50.000 2.25 0.00 40.87 4.30
3750 5216 3.335579 CAGGGGGAAGTTCTAAAGTTCG 58.664 50.000 2.25 0.00 40.87 3.95
3751 5217 3.082548 GCAGGGGGAAGTTCTAAAGTTC 58.917 50.000 2.25 0.00 39.57 3.01
3752 5218 2.225041 GGCAGGGGGAAGTTCTAAAGTT 60.225 50.000 2.25 0.00 0.00 2.66
3753 5219 1.354705 GGCAGGGGGAAGTTCTAAAGT 59.645 52.381 2.25 0.00 0.00 2.66
3754 5220 1.341089 GGGCAGGGGGAAGTTCTAAAG 60.341 57.143 2.25 0.00 0.00 1.85
3755 5221 0.702316 GGGCAGGGGGAAGTTCTAAA 59.298 55.000 2.25 0.00 0.00 1.85
3756 5222 0.178843 AGGGCAGGGGGAAGTTCTAA 60.179 55.000 2.25 0.00 0.00 2.10
3757 5223 0.620700 GAGGGCAGGGGGAAGTTCTA 60.621 60.000 2.25 0.00 0.00 2.10
3758 5224 1.925972 GAGGGCAGGGGGAAGTTCT 60.926 63.158 2.25 0.00 0.00 3.01
3759 5225 1.501654 AAGAGGGCAGGGGGAAGTTC 61.502 60.000 0.00 0.00 0.00 3.01
3760 5226 1.466186 AAGAGGGCAGGGGGAAGTT 60.466 57.895 0.00 0.00 0.00 2.66
3761 5227 2.211279 AAGAGGGCAGGGGGAAGT 59.789 61.111 0.00 0.00 0.00 3.01
3762 5228 2.679716 CAAGAGGGCAGGGGGAAG 59.320 66.667 0.00 0.00 0.00 3.46
3763 5229 3.661648 GCAAGAGGGCAGGGGGAA 61.662 66.667 0.00 0.00 0.00 3.97
3771 5237 0.034089 ACCTAATGTGGCAAGAGGGC 60.034 55.000 9.30 0.00 43.73 5.19
3772 5238 1.755179 CACCTAATGTGGCAAGAGGG 58.245 55.000 9.30 2.69 41.52 4.30
3781 5247 3.379372 CCAATCTCAAGCCACCTAATGTG 59.621 47.826 0.00 0.00 45.01 3.21
3782 5248 3.624777 CCAATCTCAAGCCACCTAATGT 58.375 45.455 0.00 0.00 0.00 2.71
3783 5249 2.954318 CCCAATCTCAAGCCACCTAATG 59.046 50.000 0.00 0.00 0.00 1.90
3784 5250 2.091665 CCCCAATCTCAAGCCACCTAAT 60.092 50.000 0.00 0.00 0.00 1.73
3785 5251 1.284785 CCCCAATCTCAAGCCACCTAA 59.715 52.381 0.00 0.00 0.00 2.69
3786 5252 0.918983 CCCCAATCTCAAGCCACCTA 59.081 55.000 0.00 0.00 0.00 3.08
3787 5253 1.693640 CCCCAATCTCAAGCCACCT 59.306 57.895 0.00 0.00 0.00 4.00
3788 5254 2.054453 GCCCCAATCTCAAGCCACC 61.054 63.158 0.00 0.00 0.00 4.61
3789 5255 1.304381 TGCCCCAATCTCAAGCCAC 60.304 57.895 0.00 0.00 0.00 5.01
3790 5256 1.304381 GTGCCCCAATCTCAAGCCA 60.304 57.895 0.00 0.00 0.00 4.75
3791 5257 1.000396 AGTGCCCCAATCTCAAGCC 60.000 57.895 0.00 0.00 0.00 4.35
3792 5258 1.372087 CGAGTGCCCCAATCTCAAGC 61.372 60.000 0.00 0.00 0.00 4.01
3793 5259 1.372087 GCGAGTGCCCCAATCTCAAG 61.372 60.000 0.00 0.00 33.98 3.02
3794 5260 1.377202 GCGAGTGCCCCAATCTCAA 60.377 57.895 0.00 0.00 33.98 3.02
3795 5261 2.268920 GCGAGTGCCCCAATCTCA 59.731 61.111 0.00 0.00 33.98 3.27
3805 5271 4.459089 GAGGGTCCAGGCGAGTGC 62.459 72.222 0.00 0.00 41.71 4.40
3806 5272 2.681778 AGAGGGTCCAGGCGAGTG 60.682 66.667 0.00 0.00 0.00 3.51
3807 5273 2.681778 CAGAGGGTCCAGGCGAGT 60.682 66.667 0.00 0.00 0.00 4.18
3808 5274 3.465403 CCAGAGGGTCCAGGCGAG 61.465 72.222 0.00 0.00 0.00 5.03
3809 5275 3.992641 TCCAGAGGGTCCAGGCGA 61.993 66.667 0.00 0.00 34.93 5.54
3810 5276 3.775654 GTCCAGAGGGTCCAGGCG 61.776 72.222 0.00 0.00 34.93 5.52
3811 5277 3.775654 CGTCCAGAGGGTCCAGGC 61.776 72.222 0.00 0.00 34.93 4.85
3812 5278 0.978146 AATCGTCCAGAGGGTCCAGG 60.978 60.000 0.00 0.00 34.93 4.45
3813 5279 0.461961 GAATCGTCCAGAGGGTCCAG 59.538 60.000 0.00 0.00 34.93 3.86
3814 5280 1.320344 CGAATCGTCCAGAGGGTCCA 61.320 60.000 0.00 0.00 34.93 4.02
3815 5281 1.437986 CGAATCGTCCAGAGGGTCC 59.562 63.158 0.00 0.00 34.93 4.46
3816 5282 1.227002 GCGAATCGTCCAGAGGGTC 60.227 63.158 4.07 0.00 34.93 4.46
3817 5283 1.541310 TTGCGAATCGTCCAGAGGGT 61.541 55.000 4.07 0.00 34.93 4.34
3818 5284 0.179073 ATTGCGAATCGTCCAGAGGG 60.179 55.000 4.07 0.00 0.00 4.30
3819 5285 2.509052 TATTGCGAATCGTCCAGAGG 57.491 50.000 4.07 0.00 0.00 3.69
3820 5286 2.219674 GCTTATTGCGAATCGTCCAGAG 59.780 50.000 4.07 0.00 0.00 3.35
3821 5287 2.201732 GCTTATTGCGAATCGTCCAGA 58.798 47.619 4.07 0.00 0.00 3.86
3822 5288 2.652662 GCTTATTGCGAATCGTCCAG 57.347 50.000 4.07 0.00 0.00 3.86
3833 5299 3.103738 CGCTGAATCACAAGCTTATTGC 58.896 45.455 0.00 0.00 43.29 3.56
3834 5300 3.103738 GCGCTGAATCACAAGCTTATTG 58.896 45.455 0.00 0.00 32.28 1.90
3835 5301 2.749076 TGCGCTGAATCACAAGCTTATT 59.251 40.909 9.73 0.00 34.75 1.40
3836 5302 2.358957 TGCGCTGAATCACAAGCTTAT 58.641 42.857 9.73 0.00 34.75 1.73
3837 5303 1.807139 TGCGCTGAATCACAAGCTTA 58.193 45.000 9.73 0.00 34.75 3.09
3838 5304 1.131883 GATGCGCTGAATCACAAGCTT 59.868 47.619 9.73 0.00 34.75 3.74
3839 5305 0.731417 GATGCGCTGAATCACAAGCT 59.269 50.000 9.73 0.00 34.75 3.74
3840 5306 0.248377 GGATGCGCTGAATCACAAGC 60.248 55.000 9.73 0.00 34.42 4.01
3841 5307 1.376543 AGGATGCGCTGAATCACAAG 58.623 50.000 9.73 0.00 0.00 3.16
3842 5308 1.739466 GAAGGATGCGCTGAATCACAA 59.261 47.619 9.73 0.00 0.00 3.33
3843 5309 1.065926 AGAAGGATGCGCTGAATCACA 60.066 47.619 9.73 0.00 0.00 3.58
3844 5310 1.661341 AGAAGGATGCGCTGAATCAC 58.339 50.000 9.73 0.00 0.00 3.06
3845 5311 2.283298 GAAGAAGGATGCGCTGAATCA 58.717 47.619 9.73 0.00 0.00 2.57
3846 5312 1.260033 CGAAGAAGGATGCGCTGAATC 59.740 52.381 9.73 2.85 0.00 2.52
3847 5313 1.134699 TCGAAGAAGGATGCGCTGAAT 60.135 47.619 9.73 0.00 0.00 2.57
3848 5314 0.246360 TCGAAGAAGGATGCGCTGAA 59.754 50.000 9.73 0.00 0.00 3.02
3849 5315 0.458543 GTCGAAGAAGGATGCGCTGA 60.459 55.000 9.73 0.00 39.69 4.26
3850 5316 1.746727 CGTCGAAGAAGGATGCGCTG 61.747 60.000 9.73 0.00 39.69 5.18
3851 5317 1.517257 CGTCGAAGAAGGATGCGCT 60.517 57.895 9.73 0.00 39.69 5.92
3852 5318 2.998667 CGTCGAAGAAGGATGCGC 59.001 61.111 0.00 0.00 39.69 6.09
3859 5325 0.809385 TCAGTAGCCCGTCGAAGAAG 59.191 55.000 0.00 0.00 39.69 2.85
3860 5326 0.524862 GTCAGTAGCCCGTCGAAGAA 59.475 55.000 0.00 0.00 39.69 2.52
3861 5327 1.642037 CGTCAGTAGCCCGTCGAAGA 61.642 60.000 0.00 0.00 0.00 2.87
3862 5328 1.226323 CGTCAGTAGCCCGTCGAAG 60.226 63.158 0.00 0.00 0.00 3.79
3863 5329 2.872557 CGTCAGTAGCCCGTCGAA 59.127 61.111 0.00 0.00 0.00 3.71
3864 5330 3.807538 GCGTCAGTAGCCCGTCGA 61.808 66.667 0.00 0.00 0.00 4.20
3865 5331 3.736482 GAGCGTCAGTAGCCCGTCG 62.736 68.421 0.00 0.00 34.64 5.12
3866 5332 1.935327 AAGAGCGTCAGTAGCCCGTC 61.935 60.000 0.00 0.00 34.64 4.79
3867 5333 1.533469 AAAGAGCGTCAGTAGCCCGT 61.533 55.000 0.00 0.00 34.64 5.28
3868 5334 0.389948 AAAAGAGCGTCAGTAGCCCG 60.390 55.000 0.00 0.00 34.64 6.13
3869 5335 1.337823 TGAAAAGAGCGTCAGTAGCCC 60.338 52.381 0.00 0.00 34.64 5.19
3870 5336 2.080286 TGAAAAGAGCGTCAGTAGCC 57.920 50.000 0.00 0.00 34.64 3.93
3871 5337 3.495001 AGTTTGAAAAGAGCGTCAGTAGC 59.505 43.478 0.00 0.00 0.00 3.58
3872 5338 4.508124 ACAGTTTGAAAAGAGCGTCAGTAG 59.492 41.667 0.00 0.00 0.00 2.57
3873 5339 4.439057 ACAGTTTGAAAAGAGCGTCAGTA 58.561 39.130 0.00 0.00 0.00 2.74
3874 5340 3.270877 ACAGTTTGAAAAGAGCGTCAGT 58.729 40.909 0.00 0.00 0.00 3.41
3875 5341 3.557595 AGACAGTTTGAAAAGAGCGTCAG 59.442 43.478 0.00 0.00 0.00 3.51
3876 5342 3.309682 CAGACAGTTTGAAAAGAGCGTCA 59.690 43.478 0.00 0.00 0.00 4.35
3877 5343 3.303395 CCAGACAGTTTGAAAAGAGCGTC 60.303 47.826 0.00 0.00 0.00 5.19
3878 5344 2.614057 CCAGACAGTTTGAAAAGAGCGT 59.386 45.455 0.00 0.00 0.00 5.07
3879 5345 2.614057 ACCAGACAGTTTGAAAAGAGCG 59.386 45.455 0.00 0.00 0.00 5.03
3880 5346 4.639135 AACCAGACAGTTTGAAAAGAGC 57.361 40.909 0.00 0.00 0.00 4.09
3881 5347 6.442513 AGAAACCAGACAGTTTGAAAAGAG 57.557 37.500 0.00 0.00 40.01 2.85
3882 5348 6.620678 CAAGAAACCAGACAGTTTGAAAAGA 58.379 36.000 0.00 0.00 40.01 2.52
3883 5349 5.289434 GCAAGAAACCAGACAGTTTGAAAAG 59.711 40.000 0.00 0.00 40.01 2.27
3884 5350 5.167845 GCAAGAAACCAGACAGTTTGAAAA 58.832 37.500 0.00 0.00 40.01 2.29
3885 5351 4.219507 TGCAAGAAACCAGACAGTTTGAAA 59.780 37.500 0.00 0.00 40.01 2.69
3886 5352 3.761218 TGCAAGAAACCAGACAGTTTGAA 59.239 39.130 0.00 0.00 40.01 2.69
3887 5353 3.351740 TGCAAGAAACCAGACAGTTTGA 58.648 40.909 0.00 0.00 40.01 2.69
3888 5354 3.699067 CTGCAAGAAACCAGACAGTTTG 58.301 45.455 0.00 0.00 40.01 2.93
3889 5355 2.099756 GCTGCAAGAAACCAGACAGTTT 59.900 45.455 0.00 0.00 42.56 2.66
3890 5356 1.678101 GCTGCAAGAAACCAGACAGTT 59.322 47.619 0.00 0.00 34.07 3.16
3891 5357 1.133976 AGCTGCAAGAAACCAGACAGT 60.134 47.619 1.02 0.00 34.07 3.55
3892 5358 1.602311 AGCTGCAAGAAACCAGACAG 58.398 50.000 1.02 0.00 34.07 3.51
3893 5359 2.057137 AAGCTGCAAGAAACCAGACA 57.943 45.000 1.02 0.00 34.07 3.41
3894 5360 2.544486 CCAAAGCTGCAAGAAACCAGAC 60.544 50.000 1.02 0.00 34.07 3.51
3895 5361 1.682854 CCAAAGCTGCAAGAAACCAGA 59.317 47.619 1.02 0.00 34.07 3.86
3896 5362 1.870993 GCCAAAGCTGCAAGAAACCAG 60.871 52.381 1.02 0.00 34.07 4.00
3897 5363 0.104671 GCCAAAGCTGCAAGAAACCA 59.895 50.000 1.02 0.00 34.07 3.67
3898 5364 0.940991 CGCCAAAGCTGCAAGAAACC 60.941 55.000 1.02 0.00 34.07 3.27
3899 5365 0.940991 CCGCCAAAGCTGCAAGAAAC 60.941 55.000 1.02 0.00 34.07 2.78
3900 5366 1.363443 CCGCCAAAGCTGCAAGAAA 59.637 52.632 1.02 0.00 34.07 2.52
3901 5367 1.795170 GACCGCCAAAGCTGCAAGAA 61.795 55.000 1.02 0.00 34.07 2.52
3902 5368 2.203337 ACCGCCAAAGCTGCAAGA 60.203 55.556 1.02 0.00 34.07 3.02
3903 5369 2.256461 GACCGCCAAAGCTGCAAG 59.744 61.111 1.02 0.00 36.60 4.01
3904 5370 3.659092 CGACCGCCAAAGCTGCAA 61.659 61.111 1.02 0.00 36.60 4.08
3907 5373 1.970917 CTAAGCGACCGCCAAAGCTG 61.971 60.000 11.03 0.00 43.17 4.24
3908 5374 1.741770 CTAAGCGACCGCCAAAGCT 60.742 57.895 11.03 0.00 43.17 3.74
3909 5375 2.785258 CTAAGCGACCGCCAAAGC 59.215 61.111 11.03 0.00 43.17 3.51
3910 5376 2.785258 GCTAAGCGACCGCCAAAG 59.215 61.111 11.03 7.25 43.17 2.77
3936 5402 4.222847 GAGATGGCGTCCCGGTCC 62.223 72.222 0.00 0.00 0.00 4.46
3937 5403 4.222847 GGAGATGGCGTCCCGGTC 62.223 72.222 0.00 0.00 0.00 4.79
3942 5408 4.162690 AAGGCGGAGATGGCGTCC 62.163 66.667 2.37 0.00 39.82 4.79
3943 5409 2.586357 GAAGGCGGAGATGGCGTC 60.586 66.667 0.00 0.00 39.82 5.19
3944 5410 2.650813 GATGAAGGCGGAGATGGCGT 62.651 60.000 0.00 0.00 39.82 5.68
3945 5411 1.958205 GATGAAGGCGGAGATGGCG 60.958 63.158 0.00 0.00 39.82 5.69
3946 5412 1.958205 CGATGAAGGCGGAGATGGC 60.958 63.158 0.00 0.00 0.00 4.40
3947 5413 1.958205 GCGATGAAGGCGGAGATGG 60.958 63.158 0.00 0.00 0.00 3.51
3948 5414 1.958205 GGCGATGAAGGCGGAGATG 60.958 63.158 0.00 0.00 0.00 2.90
3949 5415 2.423446 GGCGATGAAGGCGGAGAT 59.577 61.111 0.00 0.00 0.00 2.75
3955 5421 2.125106 AAGGTCGGCGATGAAGGC 60.125 61.111 14.79 0.00 0.00 4.35
3956 5422 1.878522 CGAAGGTCGGCGATGAAGG 60.879 63.158 14.79 0.00 36.00 3.46
3957 5423 2.517450 GCGAAGGTCGGCGATGAAG 61.517 63.158 14.79 5.42 40.84 3.02
3958 5424 2.508439 GCGAAGGTCGGCGATGAA 60.508 61.111 14.79 0.00 40.84 2.57
3959 5425 3.449227 AGCGAAGGTCGGCGATGA 61.449 61.111 14.79 0.00 40.84 2.92
3968 5434 2.185310 AAAGGCCATCGAGCGAAGGT 62.185 55.000 14.55 0.00 46.54 3.50
3969 5435 1.432270 GAAAGGCCATCGAGCGAAGG 61.432 60.000 5.01 9.57 36.20 3.46
3970 5436 1.756375 CGAAAGGCCATCGAGCGAAG 61.756 60.000 22.31 0.00 42.76 3.79
3971 5437 1.809619 CGAAAGGCCATCGAGCGAA 60.810 57.895 22.31 0.00 42.76 4.70
3972 5438 2.202743 CGAAAGGCCATCGAGCGA 60.203 61.111 22.31 0.00 42.76 4.93
3973 5439 2.509336 ACGAAAGGCCATCGAGCG 60.509 61.111 30.30 16.03 42.76 5.03
3974 5440 1.153549 AGACGAAAGGCCATCGAGC 60.154 57.895 30.30 21.99 43.69 5.03
3975 5441 0.108615 ACAGACGAAAGGCCATCGAG 60.109 55.000 30.30 21.87 43.69 4.04
3976 5442 0.108804 GACAGACGAAAGGCCATCGA 60.109 55.000 30.30 0.00 43.69 3.59
3977 5443 1.413767 CGACAGACGAAAGGCCATCG 61.414 60.000 24.28 24.28 43.69 3.84
3978 5444 1.696832 GCGACAGACGAAAGGCCATC 61.697 60.000 5.01 1.17 43.69 3.51
3979 5445 1.741770 GCGACAGACGAAAGGCCAT 60.742 57.895 5.01 0.00 43.69 4.40
3980 5446 2.357034 GCGACAGACGAAAGGCCA 60.357 61.111 5.01 0.00 43.69 5.36
3981 5447 3.119096 GGCGACAGACGAAAGGCC 61.119 66.667 0.00 0.00 43.69 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.