>input_sequence_39297
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----------------------------------------------------------ATGGCTCCGAGGGAGCACATCT
TCTTCCTCCTCTA---TGCCATCCCACTCCTCGTTCTTCCCTG---TGCTGCAT---CCACAACCAGCAACGACAGTTTC
AGTTTTCTATACAACGGCTTCTCCGGTGTCAACCTCACCCTCGACGGCAGCGCCAAGGTGACGCCGGAGGGGCTCCTCGA
GCTCACCAACGACACCATCAACCTC---GGCCACGCCTTGTACCCGACCCCGCTGAGCCTGCGCGGGTCGCCCAACGGCA
CGGTGCGGTCCTTCTCCCTCAGCTTCGCCTTCGCCATCCTCTCCGTCCACGACGGCATAAGCGCCGACGGCATGGCCTTC
TTTGTCGCCCCCACCAAGAACCTCTCCAACACGTGGGCGCAG------TACATGGGCCTCCTCAACAGCGGCAACAATGG
CAACGCCAGCAACCACATGTTCGCCGTCGAGCTCGACACCACCCAGAACAAGGAGTTCCAGGACATGGACAACAACCACG
TTGGCATCGACATCAACAGCCTCAACTCCTTGCAGGCCTACCGCACTGGGTACTACGATGATGAGAGTAGAGCCTTCAAC
AACTTGACTCTTATCAGCGGCAAGGCGATGCAGGTATGGGCTGACTATGATGGGGTGTCCACGCAGATCAACGTGTTCTT
GGCTCCTCTGGGAGTAGCTAAGCCGGTGAGGCCGCTGCTTTCATCTCCCTACAACCTCTCCACAGTTCTGAGAGAACCAT
CGTACATCGGCTTCGCAGCCACTACCGGCGCAATCAGCACGATCCACTGCGTTCTCGGCTGGAGCTTCGCCGTAAACGGC
CCTGCTCCAGCCATCGACACATCTAAGCTCCCAAAGCTACCACGTCTTGGCCCAGAGCCTCGCTCCAAGGTCCTGGAGAT
CACCCTGCCTATTGCCACGGCCACGTTCGTCCTTGTAGTAGGAACTGTCATCATTTTGTTTCTTCGCAAGAGATTCAGGT
ACAGGG------------------------AGCTGCGGGAAGATTGGGAGGTCGATTTCGGGCCACACCGCTTCTCCTTC
AAGGACCTGTTCCATGCCACGGAAGGGTTCAAGGAAAAGAATCTGCTTGGTGTGGGCGGGTTCGGCAAGGTATACAAAGG
GACACTCCCAAAGTCCAAACTGAAAGTGGCGGTGAAGAGAGTGTCTCACGAGTCGAGGCAAGGGATGAAGGAGTTCATCG
CGGAGGTTGTCAGTATCGGCCGGCTCAGACACCGCAACCTTGTGCCCCTGCTTGGCTATTGCCGAAGGAAAGGTGAACTT
CTTTTGGTTTATGACTACATGTCAAATGGAAGCCTCAATCAGTATTTATACTTTAAAGATGGCAAGCCATCACTGAATTG
GGAGG---------AGAGGTTACATATTATCAAGGGTGTCGCGTTCGGATTGTTTTACCTTCACGAGAAGTGGGAGAAAG
TTGTCATACACCGAGACGTCAAGCCGAGCAACGTGCTTCTGGACAGTGAAATGAATGCAAGACTAGGTGACTTTGGTCTC
TCAAGGTTGTACGATCATGGCACTGATCCACAAACCACACATATGGTTGGAACCATGGGATACCTGGCGCCTGAGTTCGT
ACGGACGGGCAAGGCATCCCCTCTGACGGACGTGTTTGCATTCGGCATATTTCTCCTTGAGGTTACTTCTGGGCAGAGGC
CTATCAAGCAGAACCCATTTGGCAACAAACATACATTGGTCGACTGGGTTATAGAGCGTTGGCACAACGGATCGCTCATG
GATACCGTGGATCAGAGACTGCGGGGTGACTACAACATCGATGATGCATCATTGGTGCTGAAGCTAGGGCTTCTGTGCTC
GCACCCTTTTACTAGCGCAAGGCCCACAATGCGGCAAGTCATGCAGTATCTCGAAGGTGATACACCACTCCCAGAGCTAA
CACCAGCACACTTCAGCTTCACTATGCAGGCCTTGACGCAAAACAGAGGATTGGAATCACCAAACTTGCAATACCCTCAG
TTATCGACGAGTTTTGCCACTTTTTCCGACCTTTCAGGAGGAAGATAA--------------------------------
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>chr3A_1_TraesCS3A01G101800
AACAC---------------------------------------------------------------------------
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--------------------------------------------------------------------------AGACAT
GGAGTCTTGAAACCACCTTACAAAGTTGATCTCATCCAATGCTACAGTCTCCTCAGTGGACCGACTCCTCTCCCTCCTCC
CTTCGCTTTCACATTT---CTCTCATGCTTTTCCTGAAACTCCAGCCATGCAACCGGATCGCCCTGGGTTAGCCACAC--
AGAAAAATGGCTGTCGCAGTAGACTTTTATCAGAGAAT--AGACAAGCTCTTCTGCAGGCACCCGTTTGACTCTACAAAC
AACACGTCCATCAGTTTGGGACCGTCCAACCCGACATGGAGACGTGCATGATGTAGGTGTCCACCGTGTAGCGACGGCCC
AGTCCTTGGTGTTGGGCGGATGAGGATGTCCTTACA--------------------------------------------
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---------------------------------------------------------TACAGTATGTAGAAAACTCTAGG
CTAGCTACATTATATGTGCGGTGCATACCTAGCCCGGACCACCTCAGATTCAGCAGAGAAGTCCAACACAAGT-------
--------GCATATGCAGACCGCTAGCCAGAGGACGC---CG-GGATTGACCATGACGGATCATGCATA----CCCAGTC
GTTTTAGACGACTATCCAGACTTATCACCAACAGAAGTG-----------------------TACGCATGCTACTCTACT
TTCTGGCTTGATATTCAAAGGCTCTTCCCTCGTCTCGGAG------GAGAGAATTATAACAACGTGT--------TGCTA
CTTGCTAGTGGTTGCCGTCTAAATCAGTCTGATTTAGACGGTTCCACAAAGATGTTCAGACTTCAGCGTCGATGGGGAGA
CAATTTTTCAGTATCT-AGGAAGAAAATTGAACCTGTTGGACCA-CTTTCTCTTCGATTGCACACGTGGATGGTGATGTG
TCTCTTGCTTGCGACTTAGCAAAATTACTAAGTACTATAAATTTTATGGATTTACTTCTTAGTAAAT----------AAT
CATGGGCAGTTGTTTGCCACTGTCACGCGCACATACAGCAGTA---CTACTTAGATAGGATAGCCACACCGGTACTAGTT
GTTTATCAGCCACAAAATATCGTAATA-TTTTCCTTGCCAGAGAGCTC-----AAGGCATGGCTCCGAGGGAGCACATCT
TCTTCCTCCTCTA---TGCCATCCCACTCCTCGTTCTTCCCTG---TGCTGCAT---CCACAACCAGCAACGACAGTTTC
AGTTTTCTATACAACGGCTTCTCCGGTGTCAACCTCACCCTCGACGGCAGCGCCAAGGTGACGCCGGAGGGGCTCCTCGA
GCTCACCAACGACACCATCAACCTC---GGCCACGCCTTGTACCCGACCCCGCTGAGCCTGCGCGGGTCGCCCAACGGCA
CGGTGCGGTCCTTCTCCCTCAGCTTCGCCTTCGCCATCCTCTCCGTCCACGACGGCATAAGCGCCGACGGCATGGCCTTC
TTTGTCGCCCCCACCAAGAACCTCTCCAACACGTGGGCGCAG------TACATGGGCCTCCTCAACAGCGGCAACAATGG
CAACGCCAGCAACCACATGTTCGCCGTCGAGCTCGACACCACCCAGAACAAGGAGTTCCAGGACATGGACAACAACCACG
TTGGCATCGACATCAACAGCCTCAACTCCTTGCAGGCCTACCGCACTGGGTACTACGATGATGAGAGTAGAGCCTTCAAC
AACTTGACTCTTATCAGCGGCAAGGCGATGCAGGTATGGGCTGACTATGATGGGGTGTCCACGCAGATCAACGTGTTCTT
GGCTCCTCTGGGAGTAGCTAAGCCGGTGAGGCCGCTGCTTTCATCTCCCTACAACCTCTCCACAGTTCTGAGAGAACCAT
CGTACATCGGCTTCGCAGCCACTACCGGCGCAATCAGCACGATCCACTGCGTTCTCGGCTGGAGCTTCGCCGTAAACGGC
CCTGCTCCAGCCATCGACACATCTAAGCTCCCAAAGCTACCACGTCTTGGCCCAGAGCCTCGCTCCAAGGTCCTGGAGAT
CACCCTGCCTATTGCCACGGCCACGTTCGTCCTTGTAGTAGGAACTGTCATCATTTTGTTTCTTCGCAAGAGATTCAGGT
ACAGGG------------------------AGCTGCGGGAAGATTGGGAGGTCGATTTCGGGCCACACCGCTTCTCCTTC
AAGGACCTGTTCCATGCCACGGAAGGGTTCAAGGAAAAGAATCTGCTTGGTGTGGGCGGGTTCGGCAAGGTATACAAAGG
GACACTCCCAAAGTCCAAACTGAAAGTGGCGGTGAAGAGAGTGTCTCACGAGTCGAGGCAAGGGATGAAGGAGTTCATCG
CGGAGGTTGTCAGTATCGGCCGGCTCAGACACCGCAACCTTGTGCCCCTGCTTGGCTATTGCCGAAGGAAAGGTGAACTT
CTTTTGGTTTATGACTACATGTCAAATGGAAGCCTCAATCAGTATTTATACTTTAAAGATGGCAAGCCATCACTGAATTG
GGAGG---------AGAGGTTACATATTATCAAGGGTGTCGCGTTCGGATTGTTTTACCTTCACGAGAAGTGGGAGAAAG
TTGTCATACACCGAGACGTCAAGCCGAGCAACGTGCTTCTGGACAGTGAAATGAATGCAAGACTAGGTGACTTTGGTCTC
TCAAGGTTGTACGATCATGGCACTGATCCACAAACCACACATATGGTTGGAACCATGGGATACCTGGCGCCTGAGTTCGT
ACGGACGGGCAAGGCATCCCCTCTGACGGACGTGTTTGCATTCGGCATATTTCTCCTTGAGGTTACTTCTGGGCAGAGGC
CTATCAAGCAGAACCCATTTGGCAACAAACATACATTGGTCGACTGGGTTATAGAGCGTTGGCACAACGGATCGCTCATG
GATACCGTGGATCAGAGACTGCGGGGTGACTACAACATCGATGATGCATCATTGGTGCTGAAGCTAGGGCTTCTGTGCTC
GCACCCTTTTACTAGCGCAAGGCCCACAATGCGGCAAGTCATGCAGTATCTCGAAGGTGATACACCACTCCCAGAGCTAA
CACCAGCACACTTCAGCTTCACTATGCAGGCCTTGACGCAAAACAGAGGATTGGAATCACCAAACTTGCAATACCCTCAG
TTATCGACGAGTTTTGCCACTTTTTCCGACCTTTCAGGAGGAAGATAACATATACATATACGGTGTTCAGTGTTATCGTG
TCTCTCTT-AGATGTTAAAACATCTAC----------------------------TTTCTTGTGC----ATTTCGTCTGG
ATAGATACTATATTTTAATGTATTCAAACACTAGCTAGGGA--GCATATCAAACATTTACTTCACTTCAGATGTTACTCT
GGTTGTCTATGCTCAGTTTAATTACTCACGGGGTTAATGAATCAATCTTCTGTATGTTCTACATGGTTCCAGTCTGAAAC
TACTTGGTGTATGTAAGCACCTAGCATGTACATGTGAACTCATGAATTTTACA-GAAGTTTCTGTCTGTGCTTGTTTGGA
ATTCCTTTGAGAAACAATGAGAGTTCACTAACTGAATGGATTACATCGTCTCGTGAGTTGTCTGAAACATCATGGCCTTT
GGGTCAGTTTGAGTGATATATACAGGTGTCAGTCGTGGAGCTTGAAAGAAATCTTAGGAGGGACGAAGCTGTAACTTTTT
AGGACTACCCCAAATCGTCCGGGTTAAATCAATTGTACTTGAAGTGTCGATCTTGCGTACCATAAACTTTGCAATTCCAC
AAAAGGGTCAGCATAAGGACTGCTTATTCGAACCACAAAAGGGTCCGCTGTGTGGTATCCCTGAAGATTCGAACCACATC
TTCTTCTCCTGTGTGTCCGTTTAATTCGTGTGGAGCTGCTTTAGAGAGGTAGTGGGAGGTGATTGGTGCCACACCAACTT
TCCCGACCTTTTTGCCGAACTTTAGAACTTCCCCCTGCCCTCTTGCCACATTAGGTGGCTTGAGATTGGGGCACTCGCCT
GGACCCTCTGGACGATTCGCAATAAGCTTGTGATTCAGCGCATCCTTCTTCGACGGGCTACTGACGCTCTTTTCAAACTG
TCTGGTTTCTTGCAGCTTTGGCGGTCGCTTAGCGGCCTTCGGGACCGGGACGCCATCTCCGCCTTCATCGCCGACCTTCG
CTCGATGGCCTTTCGTCTGTCGCCGCCGCCGCCCCCTCCGCCTC
>chr3B_1
AACAC---------------------------------------------------------------------------
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--------------------------------------------------------------------------AGACAT
GGAATCTTGAAACCACCTCACAAAGTTGATTTCGTCCAATGCTAGTCTT-----AGTGGACCGACCCATCTCTCTCCTCC
CTCTGCTTTCACATTTTTCCTCCCATACTTTACCCAAAACTGCAGCCATGCTACCGGGTCGCCATGGGTTAGCCACAGAG
AGAGAAATAGCTGTCGCGGTAGACTTTAGACTTTTATCAGAGACAACCTATTCCGCAGGCACCCATTTGACTCTACAAAC
AACACATCCATCAGTCTGGGAGCATCCAACCCGACATGGAGACGTGCGCGAGGTAGGTGTCCACGGTGTAGCGATGGCCC
GGTCCTTGGTGTTGTGCGGATGTGGATGCCCTTATT--------------------------------------------
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--------------------------------------------------------GTAGAGGATGAAGAAAACTCTAGG
CCATATTTACT---TGTGCGGTGCATGCCTACCCCGGACCACCTCAGGTTGAGCACAAAAGTCCAACACATGTACACTCC
GGTACTTGGCCTATGCAGACCGCTAGCTAGAGAACGACGGCG-GGATTGACGATGACGAATCATGCATA----CCCAGTC
GTTGAAGAGGACTATTCAGACTTATCACCAACAGAAGTGCCAACAGAAAGATGTAC-TAGTGTACACATGCTATTCTACT
TTCTGGTTTGATATTCTACTT-------------TCGGAGTCGGAGG-GGGAACTGTAACCACGTGTGTACGTGCTGC--
----CTAGTGGTTGCCGTCTGAATCAGTCTGATTTAGACAATTCCGGAAATATGTTCAGACTTCAGCGTCGATCGGGAGA
CGAACTTTCAGTATCTAAGGAAGAAAATTGAACCTGTTGGACCAGCTTCCCGTTCGATTGCACCCGCAGATGGTGATGTA
TCCTCT-CTTGCGAGTTAGCAAAATTACTGAATTTTATGGATTTAACTCTCAGTAGTACTAGTACATCGGTCGCGAAAAT
CATGGGCAGTTGTTTGCTACTGACGGGCGCACATACAGCAGTA---CTACTTAGATAGCCACACC--------GGTAGTT
GTTTATCAACAACAAAATATCATAATC-TTTTCCTTGCCAGT--GCTC-----GAGACATGGCTCCGAGGGAGCACATCT
TCTTCCTCCTACAC---GCCATTCCACTCCTCTTCCTTCTTCACCTTGCTGCAT---CCACAACCAGCAACGACAGTTTC
AGCTTCCTATACAATGGCTTCTCGGGTGTCAACCTCACCCTCGACGGCAACGCCAACGTCACGCCGGATGGGCTCCTCGA
GCTCACCAACGACACCATCAACCTC---GGCCACGCCTTCTACCCGACCCCGCTGAGCCTGCGCGGGTCGCCCAACGGCA
CGGTGCGGTCCTTCTCCCTCAGCTTCGCGTTCGCCATCCTCTCCGTCCACGAGGGCATCAGCGCCGACGGCATGGCCTTC
TTCGTCGCCCCCACCAAGAACCTCTCCAACACGTGGGCGCAG------TACATGGGCCTCCTCAACAGCGGCAACAACGG
CAACGCCAGCAACCACATGTTCGCCGTCGAGCTCGACACCACCCAGAACGAGGAGTTCCAAGACATGGACAACAACCACG
TCGGCATCGACATCAACAGCCTCACCTCCTTGCAGGCCTACCGCACCGGGTACTACGATGAAGGGAGCGGATCCTTCAAC
AACCTGACCCTTATCAGTGGCAAGGCGATGCAGGTATGGGCTGACTATGATGGGGAGTCCACGCAGATCAACGTGTTCTT
GGCTCCTCTCGGATTCGCTAAGCCGGAGAGGCCACTGCTTTCGTCCCCCTATAACCTCTCCACAGTTCTGAGAGAACCAT
CGTACATCGGCTTCGCAGCCACAACCGGCGCAATCAGCACAATCCACTGCGTTCTCGGCTGGAGCTTTGCCATTAATGGC
CCTGCTCCTGCCATTGACACATCCAAGCTCCCAAAGCTACCACGTCTTGGTCCAGAGCCGCGCTCCAAGGTCCTGGAGAT
CACCCTGCCTATTGCCACGGCCATGTTCGTCCTTGTAGTGGGAACTGTTATCATTCTGGTTGTTCGCAAAAGATTCAGGT
ACAGGG------------------------AGCTGCGGGAAGACTGGGAGGTCGATTTCGGGCCACATCGGTTCTCCTTC
AAGGACCTGTTCCATGCAACCGAAGGGTTCAAGGAAAAGAACCTGCTTGGTGTGGGCGGGTTCGGCAAGGTATACAAAGG
GACACTCCGAAAGTCCAAACTGAAAGTGGCGGTGAAGAGAGTGTCTCACGAGTCAAGGCAAGGGATGAAGGAGTTCATCG
CGGAGGTTGTCAGTATCGGCCGGCTCAGACACCGCAACCTTGTGCCCCTGCTTGGTTATTGCCGACGTAAAGGTGAACTT
CTTTTGGTTTATGACTACATGTCAAATGGTAGCCTCAATCAGTATCTGTACTGTGAAGATGGCAAGCCATCACTGAATTG
GGAGG---------AGAGGTTCCATATTATCAAGGGCGTCGCATTCGGCTTGTTCTACCTTCACGAGAAGTGGGAGAAAG
TTGTCATACACCGAGACGTTAAGCCGAGCAACGTGCTTCTGGACAGTGAAATGAATGCAAGACTAGGTGACTTTGGTCTC
TCAAGGCTGTACGACCATGGCACTGATCCACAAACCACACATATGGTTGGAACCATGGGATACCTGGCGCCTGAGTACGT
CCACACGGGCAAGGCATCCACTCTGACGGACATGTTTGCATTCGGCATATTTCTCCTTGAGGTCACTTCTGGGCAGAGGC
CTATCAAGCAGAACCCATTTGGCAACAAACATACATTGGTTGACTGGGTTATAGAGCGCTGGCACAACGGATCGCTCATG
GAGACTGTGGATCCGAGACTGCGGGGTGACTACAACATCGATGATGCATCTTTGGTGCTGAAGCTAGGGCTTCTATGCTC
GCACCCTTTTACTAGCGCAAGGCCCACAATGCGACATGTCATGCAGTACCTCGAAGGTGATACACCACTCCCAGAGCTAA
CACCAGCACATTTCAGCTTCACTATGCAGGCCTTGACGCAAAACAGAGGATTGGAATCACCAAATGTGCAGTATCCTCAG
TTATCGACGAGTTTTGCCACTTTTTCCAGCCTCTCAGGAGGAAGATAACACATGCATATACGGTGTTTGGTGTTATTGTG
TCTCT--TCAGATGTTAAAATATCTGC----------------------------TTTCTTTCTTGCGTATTTAGTCTGG
ATAGATACTATATTCTAATGTATTCGAACGCTAGCTAGGGA--GTATATCAAAGATTTACTTCACTTCAAATGTTACTCT
GTATGTCTATGTTCAGCTTAATTACTCATGGAGTTAATTAATCAATCTTCTGTATCTTCTACATGGTTCCAGTCTGAATG
TA-------------------------GTACATGTGAATTCATGAATTTTACACGAAGTTTCTGTTTGTGCTTGTTTGGA
ATTCCTCTGAGAAACAACGAGGGTTCACTAACTGAATGGATTACATCGGCTTGTAAGTTGTCTGTAACATCATGGCCTTT
GGGTCAGTTTGAGTACTATATATAGGTGGCAGTGGCGTAGCTTAAAAGAAATCTTAGGAGGGGCGAAGCTACAACTTATT
AGGACTGCCCCAAATCGTACGGATTGAATTAATTGTACTTCAAGTGTCGATCTTGTGCACCATAAACTTTGCAATTCTAC
AAAAGGGTCTGCGTAAGGCCTGCTT-------------------------------------------------------
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--------------------------------------------
>chr3D_1
TATCTAGACAGAAAATTGAACCTGTTGGACCACTTTCTCTTCGATTGCACCCGCAGATGGTGATGTATCCCTTGCTTGCG
AGTTTAGGCTCAGTTTTACTGATCCTAATTTGCGTGCCAGAAATGAATTGTATGATCCTCACTGTGATATGTGACTGAGT
CATTGCGTCTTATAAGTGCCCGGTTAATTCGAGCTCTGTCATCTTTTTACTTATTATTTTTTGTACGACGTACCGGAGGA
TTGATACTCAGAATTTAATAAATAGAGTTGTGCGCGATGTCTGATGCAGAGCCGGGGCTAAACCCTCAGTTTGAATAGGC
AAAAAAAAAAGAAGCAATTCTATCCTTCGCTGTATGAACATATAGTTACAAACTTACAGTGAAGGCCATGTAGTAAAACT
GATAGTAAGTGTAATAATTGGAGCATACGTATTGCAAAGAAAAATGGGTGCATATATACAGTATACTTGTAGGCAAAACA
GATGTATTTATTGGCCAGAATTATATGGACAACACATAGACTTACTGCGCGCACTTGTGACTAAATTCTGAAAAATGAAT
ATTTGGTCATATTTTATTCAAAATAACTAGCTTAGTTTTTTTGTTGAAAGATCCAACGATATTGGCTTTCTACAGATTGA
GGAGACAACATTTTGTACTTTAATACGATAATGAGATATTTTTTTTCTAGAATACGCATGAGTGTGCGTATCATGCATTA
AAGAAGGAGATACGATAATAGAAATATATTAATAACAAGGAGATACCAATTATATCCAACCTCTGCACTAACACGATATC
AAAAGCCGGTCAAGACATTGAGAATGATTTCGCAAAAAAAAAAGTCATTATTTTTGGGAGGAATGAACACAACGAAATTA
TTAAGAAAAGGAAAAAAAATTGCATGGCTCACGCATCAACACGCAACAAAACCACCCACGGACCTTGGCAACACAGACAT
GGAATCTTGAAACCACCTTACAAAGTTGA-CTCATCCAATGCTACAGTCTCCTCAGTGGACCGACCCATCTCTCTCCTCC
CTTCGCTTTCACATTTTTCCTCTCATACTTTTCCCAAAACTGCTGCCATGCAACCGGGTCTTCATGTCATGT--------
------------------GTAGACTTTTATCAGTTTGGTGTTCAC-----------------------------------
------------------------------------------CGTGCGTGAGGTAGGTGTC-ACCGTGTAGCGTT-GCCC
GGTCGTCGGTGTTGTGCGGATGAGGATGCCCTTAGAGCATCTCCAAATAGCTTGTCTATATGGATGTCTATACTCGTTTT
TCACGACGTGAGCCTAAAACAGGCGTCCAACAGCTTGTCTATATGGTCGTCCAAATATACACATCCTCTAAATCGACCTC
GACAATGTCCACGCCTGGACAATGTGAAGGCGTCGTCTAAACTCAGCTGCAGTCATGATTTCTTCCTCTCCCCAGCGACG
GCCCACCTGTCATGGTCCCTGTATATAGACGTTCTGATGCAAGATTGGACGTGTATATGAAGGAATCTTTTTAGACCATT
GTCTATATGAATTTATAGACATCTAAATATACACATGCTATTGGAAATGTTCTTACGTAGAGGATGAAGAAAACTCTAAG
CTATACCTACT---TGTGCGGTGCATGCCTACCCCGGACCACCTCAGGTTCGGCGGAAAAGTCGAACACATGTACACTCC
GGTGCTTGGCATATGCAGACCGCTAGCTAGAGAACGACGGCCTGGATTGACGTGGACGAATCATGCATACCGGCCCAGTC
GTTGAAGAGGACTATTCAGACTTATCACCAACAGAAGTGCCAACAGAAAGATGGATGTAGTGTACACATGCTATTCTACT
TTCTGGCTTGATAGTCAAAGGCTCTTCCCTCATCTCGGAGTCGGAGG-GGGAATTGTAACCACGTGTGTACGTGTTGC--
----CTAGTGGTTGCCGTCTAGATCAGTCTGATTTAGACAATTTCAGAAAGATGTTCAGACTTCAGCGTCGATCGGGAGA
CGACCTTTCCGTATCT-AGGAAGAAAATTGAACCTCTTGGACCT-CTTTCTCTTCGATTGCAGCCGTAGATGGTGATGTA
TCTCTTGCTTGCGACTTAGCAAAATTCCTAAATTTTACGGATTTACCTTACCTCTGAGTAGCG-CATCGATCGCGAAAAT
CATGGGCAGTTGTTTGCCACTGTCGGGCGCACATACAGCAGTAGTACTACTTAGATAGCCACACC--------AGTAGTT
GTTTATCAACAAGCAAATACATTAATCTTTTTCCTTGCCAGA--GCTC-----GAGACATGGCTCCGAAGGAGCACATCT
TCCTCCTCCTACGTCCTGCCATCCCACTCCTCGTTCTGCTTCCCCTTGTTGCAT---CCACAACCAGCAACCACAGTTTC
AGTTTCCTATACCATGGCTTCTCTGGTGTCAACCTCACCCTCGACGGCAACGCCATGGTCACGCCGGACGGGCTCCTCGA
ACTCACCAACGACACCATCAACCTC---GGCCACGCCTTCTACCCGACCCCGCTGAGCCTGAGCGGGTCGCCCAACGGCA
CGGTGCGGTCCTTCTCCCTCAGCTTCGCGTTCGCCATCCTCTCCGTCCACGACGGCATAAGCGCCGACGGCATGGCCTTC
TTCGTCGCCCCTACCAAGAACCTCTCCAACACGTGGGCGCAG------TACATGGGCCTCCTCAACAGCGGCAACAACGG
CAACGCCAGCAACCACATGTTCGCCGTTGAGCTCGACACCACCCAAAACGAGGAGTTCCAGGACATGGACAACAACCACG
TTGGCATCGACATCAACAGCCTCAACTCCTTGCAGGCCTACCGCACTGGGTACTACGACGACGGGAGTGGATCCTTCAAC
AACCTGACCCTTATCAGCGGCAAGGCGATGCAGGTATGGGCTGACTATGATGGGGAGTCCACGCAGATCAACGTGTTCTT
GGCTCCTCTCGGATTCGCTAAGCCGGTGAGGCCACTGCTTTCGTCTCCCTATAACCTCTCCACAGTTCTGAGAGAACCAT
CCTACATCGGCTTCGCAGCCACAACCGGCGCAATTAGCACGATCCACTGCGTTCTAGGCTGGAGCTTCGCCATGAACGGC
CCTGCTCCAGCCATCGACACATCCAAGCTCCCAAAGCTACCACGTCTTGGCCCAGAGCCTCGCTCCAAGGTCCTGGAGAT
CACCCTGCCTATTGCCACGGCCACGTTCGTCCTTGTAGTGGGAACTGTCATCATTCTGTTTCTTCGCAAGAGATTCAGGT
ACAGGG------------------------AGCTGCGGGAAGATTGGGAGGTCGATTTCGGGCCGCACCGCTTCTCCTTC
AAGGACCTGTTCCATGCGACGGAAGGGTTCAAGGAAAAGAACCTGCTTGGCGTGGGCGGGTTCGGCAAGGTGTACAAAGG
GACCCTCCCAAAGTCCAAACTGAAAATAGCGGTGAAGAGGGTGTCGCACGAGTCGAGGCAAGGGATGAAAGAATTCATCG
CGGAGGTTGTCAGTATCGGCCGGCTCAGACACCGCAACCTTGTGCCCCTGCTAGGCTATTGCCGGAGGAAAGGTGAACTT
CTTTTGGTTTATGACTACATGTCAAATGGAAGCCTCAATCAGTATCTATACTCTGAAGATGGCAAGCCATCACTGAATTG
GGAGG---------AGAGGTTACATATTATCAAGGGTGTCGCGTTCGGATTGTTTTACCTTCACGAGAAGTGGGAGAAAG
TTGTCATACACCGAGACGTCAAGCCGAGCAACGTGCTTCTGGACAGTGAAATGAATGCAAGACTGGGTGACTTTGGTCTC
TCAAGGTTGTACGACCATGGCACTGATCCACAAACCACTCATATGGTTGGAACCATGGGATACCTGGCGCCTGAGTTCGT
ACGCACGGGGAAGGCATCCGCTCTTACAGACGTGTTTGCATTCGGCATATTTCTCCTAGAGGTCACTTCTGGGCAGAGGC
CTATCAAGCAGAACCCATTTGGCAACAAGCACACATTGGTCGACTGGGTTATAGAGCGCTGGCACAACGGATCGCTCATG
GATACCGTGGATCCGAGACTGCAGGGTCACTACGGCGTTGATGATGCATCTTTGGTACTGAAGCTAGGACTTCTGTGCTC
GCACCCTTTTACTAGCGCAAGGCCCACAATGCGGCAAGTCATGCAGTACCTGGAAGGTGATACACCACTCCCGGAGCTAA
CACCAGCACACTTCAGCTTCACTATGCAGGCCTTGACGCAAAACAGAGGATTGGAGTCACCAAACTTGCAATATCCTCAG
TTATCGACGAGTTTTGCCACTTTTTCCGACCTTTCAGGAGGAAGATAACATATACATATACGGTATTTAGTGTTATCGTG
TCTCT--T-AGATGTTAAAACATCTACTTCCTTCTTTCGCAAAAAAAAAAAGTACTTTCTTGTGC----ATTTCGTCTGG
ATAGATACTATATTCTAATGTATTAGAACACTAGCTAGGGA--GTATATTAAACATTTACTTCACTTCAGATGTTACTCT
GGATGACTATGTTCAGCTTAATTACTCACGGAGTTAATTAATCAATCGTCCGTATGTTCTACACGGTTCCAGTCTGAAAC
TACTCGGTGTATGTAAGCACCTAGCATGTAC-------------------------------------------------
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>chr3B_594
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----------------AAAGGCTCTCCCCTCATCTCGGAG------G-GAGAATTGTAACCTCGTGT--------TGC--
----CTAGTGGTTGCCGTCTAAATCAGTATGATTTAGACAATTCCGGAAAGATGTTCAGACTTCAGCGTCGATGGGGACA
CAGATTTTCAATATCT-GGGAAGAAAATTGAACCTGTTGGAGCA-CTTTCTCTTTGATTGCACCCGTAGATGGTGATGTA
TCTCTTGCTTGCGACTTAGCAAAATTACTACATACTATAAATTTTACTCAGTAGT---------------------AAAT
CATGGGCACTTGTTTGTCACTGTCGGGCGCACATA--------GTACTACTTAGATAGGCACACC--------GGTAGTT
GTTTATCAGAAACAAAATATCTTAATC-TTTTCCTTGCCAGA--GCTGAGCTTGAGACATGGCCCCGAGGGAGCACATCT
TCTTCTTCCTACAC---GCCATCCCACTCCTCGTCCTTCTTCCCCTTGCTGTATCCACCACAACCAGCAACGACAGTTTC
AGCTTCGTATACGATGGCTTCTCCGGTGTCAACCTCACCCTCGACGGCAACGCCAAGGTCACGCCGGACGGGCTCCTCGA
GCTCACCAACGACAC-ATCAACCTT---GGCCACGCCTTCTACCCGACCCCGCTGAGCCTGCGCGGGTCGCCCAACAGCA
CGGTGCGGTCCTTCTCCCTCAGCTTCGCGTTCGCCATCCTCTCTGTCCACGACGGCATCAGCGCCGACGGCATGGCCTTC
TTCGTCGCTCCCACCAAGAACCTCTCCAACACGTGGGCGCAG------TACATGGGCCTCCTCAACAGCGGCAACAACGG
CAACACCAGCAACCACATGTTTGCCGTCGAGCTCGACACAACCCAGAATGAGGAGTTCCAGGACATGGACAACAACCACG
TCGGCATCGACATCAACAGCCTTGACTCCTTGCAGGCCTACCACACTGGGTACTACGACGACGGGAGGGGATCCTTCAAC
AACATGACCCTTATCAGCGGCAAGGCGATGCAGGTATGGGCTGACTACGATGGCGTGTCCACGCAGATCAACGTCTTCTT
GGCTCCTCTCGGATTCGCTAAGCCGGTGAGGCCACTGCTTTCATCTCCCTACAACCTCTCCACAGTTCTGAGAGAACCAT
CCTACATCGGCTTCGCAGCCACAACCGGCGCAATCAGCACGATCCACTGTGTTCTCGGCTGGAGCTTCGCCATGAATGGC
CCTGCTCCTGCCATTGACACATCCAAGCTCCCAAAGCTACCACGTCTTGGTCCAGAGCCGCGCTCCAAGGTCCTGGAGAT
CACCCTGCCTATTGCCACGGCAACATTCGTCCTCGTCATGGGAACTGTCATCATTCTGTTTCTTCGCAAGAGATTCAGGT
ACAGGG------------------------AGCTACGGGAAGATTGGGAGGTCGATTTCAGGCCGCACCGGTTCTCCTTC
AAGGACCTGTACCATGCAACGGAAGGGTTCAAGGAAAAGAACCTGCTTGGTGTGGGTGGGTTCGGCAAGGTGTACAAAGG
GACGCTCCCAAAGTCCAAACTGAAAGTAGCGGTGAAGAGGGTGTCGCACGAGTCAAGGCAAGGGATGAAGGAGTTCATCG
CGGAGGTTGTCAGCATCGGCCAGCTCAGACACCGCAACCTTGTGCCCCTGCTTGGCTATTGCCGAAGAAAAGGTGAACTT
CTTTTGGTTTATGACTACATGTCAAATCGAAGCCTCAATCAGTATCTATACTCTGAAGATGGCAAGCCATCAGTGAATTG
GGAGG---------AGAGGTTACATATTATCAAGGGTGTCGCCTTTGGATTGTTTTACCTTC-----------GAGAAAG
TTGTCATACACCGAGACGTTAAGCCGAGCAACGTGCTTCTGGACAGTGAAATGAATGCAAGACTAGGTGACTTTGGTCTC
TCAAGGTTGTACGATCATGGCACTGATCTGCAAACCACACATATGGTTGGGACCATGGGATACCTGGCGCCTGAGTTCGT
ACGCACGGGCAAGGCATCCGCTCTTACGGATGTGTTTGCATTCGGTATATTTCTCCTTGAGGTCACTTCTGGGCAGAGGC
CTATCAAGCAGAACCCATTTGGCAACAAACACACATTGGTCGACTGGGTTATAGAGCGCTGGCACAACGGATCGCTCATG
AACACCGTGGATCCGAGACTGCAGGGCCACTACGACATTGATGATGCATCTTTGGTACTGAAGCTAGGACTTCTGTGCTT
GAACCCTTTTACTAGCGCAAGGCCCACAATGCGGCAAGTCATGCAGTACCTCGAAGGTGATACACCACTCCCAGAGCTAA
CACCAGCACACTTCAGCTTCACTATGCAGGCCTTGACGCAAAACAGAGGATTGGAATCACCAAACTTGCAATATCCTCAG
TTATCGACGAGTTTTGCCACTTTTTCCGACCTTTCAGGAGGAAGATAACATATACATATACGGTGTTTAGCG-TATCGTG
TCTCT--T-AGATGTTAAAACATCTAT----------------------------TTTCTTGTGC----ATTTCGTCTGG
ATAGATACTATATTCTAATGTATTCAAACACTAGCTAGGGATCGTATATTAAACATTTACTTCACTTCAGATGTTACTCT
GGATGTCTATGTTCAACTTAATTACTCA--GAGTTAATTAATCAATCTTCTGTATGTTCTACATGGTTCCAGTCTGAAAC
TACTTGGTGTATGTAAGCACCTAGCATGTACATGTGAACTCATGAATTTTACACGAAGTTCCTGTTTGTGCTTGTTTGGA
ATTCCTTTGAGAAACAATGAGAGTTCACTAACTGAATGGATTACATCGGCTCGTAAGTTGTCTGTAACATCATGGCCTTT
GGGTCAGTTTGAGTGATATATATAGGTGGCAGTCGCAGAGCTTGAAAGAAATCTTAGGAGGGGCGAAGCTACAATTTTTT
AGTACTACCCCAAATCATACGGGTTGAATCAACTGTACTTGCAGTGTCGACCTTGTGTACCATAAA-TTTGCAATTCTAC
AAAAGGGTCTGCATAAGGCCTGCTT-------------------------------------------------------
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>chr3B_1109
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---------------GGCCTCGCCGGTGCCAACCTCACCCTCGACGGCAACGCCACGGTCACCCCCGACGGCCTCCTGGT
GCTTACCAGCCGCAAGACCAACCTGAAAGGCCACGCGTTCTACCCCACCCCGCTGCGGTTCCGCGGGTCGCCGGGCGGGC
AGGTGCACTCCTTCGCCTCCTCCTTCGTTTTCGCCATCGTCTCCGACTACACCGACTTCAGCGCCCACGGCATGGCCTTG
GTCGTGTGCCCCACGGCGGACAGCCTCTCCTCCGCGCTGCCGGCCGGCTACCTGGCCCTCCTCAACGTCCAGAACAACGG
CAACGCAAGCAACCACCTCTTCGCGGTGGAGCTCGACACCACCCAGAACACCGACTTCCAGGACATCAACGCCAACCACG
TCGGCATCGACGTCAACGATCTGCACTCCCTGCAGTCCTACCCTACGGGCTACTACCTCGACGACGGCGGCGACTTCAGG
AACCTGACTCTCTTCAGCAGGGAGGTGATGCAGGTGTGGGTGAACTACGACGGCGGGACCGGGCAGATCGACGTGACACT
GGCGCCCATCGGAGTGGCCAGACCGGCGAGGCCGCTGGTATCAGCCACCTACAACCTCTCCTCGGTGATCACGGAGCAGG
CGTACATCGGCTTCTCGTCGGCCACCGGCGGGATCAACACGCGGCACTACGTGCTCGCCTGGAGCTTCGCCATGAACGGA
CCTGCTCCGGCCATCGACGTCGCCAAGCTACCCAAGCTGCCGCGCTTCGGACCCAAGCCTCGCTCCAAGGTCCTGGAGAT
CGTTCTGCCCATAGCCACAGCG------------------------GTAATCATCCTGGCTGTCTGCACGGTTGTCGCCC
TACTCCTGCTGAGACACCTGAGGTACGCACAGCTGCTCGAGGACTGGGAGGTCGAATTCGGGCCCCATCGATTCTCGTAC
AAGGAATTGTACCATGCCACCAAAGGATTTAAGAGCAAGCATCTACTTGGCGCCGGGGGTTTCGGAAAAGTGTACAAAGG
CGTGCTCCACAAGTCCAAAATGGAGGTGGCCATAAAGAAGATCTCCCACGAGTCGAGGCAAGGGATGAAGGAGTTCATCG
CCGAGGTTGTCAGCATCGGACGCCTCCGGAACCGCAACCTAGTGCAGTTACTGGGCTACTGCAGGAGGAAGGGGGAGCTG
CTTCTGGTGTACGAGTACATGCCAAACGGCAGCCTCGATAAGTACCTCTACGGCGAGTGTGATGAGAACAACGTACACGT
GCTTGATTGGACCAAAAGGCTTCATATCATCAAAGGGGTCGCCTCCGGCTTGCTCTACATCCATGAAAAATGGGAGAAGA
TTGTGATCCATCGAGACATCAAGGCCAGCAACGTGCTCCTCGACAGCGAGATGAACGGACGCTTAGGGGACTTCGGGCTC
GCAAGGCTGTATGACCACGGCACAGATCCACAGACCACACATGTGGTGGGCACCATGGGCTATCTAGCCCCGGAGCTGGT
GCGCACGGGGAAGGCGTCGACCCTCACAGACGTGTTCGCGTTCGGC----------------------------------
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>SNPs
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---S-------------------------------------------------------------S-S----S-------
--------------------------S-------SS-----S---------------S-----S-------------S--
---S----S--------S---------------SS-SS--------S--S---S----------S---------------
-----S---------S-----S-S-----------------------S---S----------------------S-----
S-------------S-------------S-----S---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------S--S---S-------------
---SS-SS-S-SSS------------S----S---------------S---------S------------S---------
---------------------------S----S---S--------------S------S---------------------
---SS---S------S-------------------------------------------------S-------S------
-------------------------------S---------------S-------S----S-----------------SS
SSSS-----------------------------------SS-----S---------------------------------
---S-----------------------------------------------------------S---S-----------S
-------------------------------S--------------SSS-S--SSS-S------S---------------
------------------------SS---------------------------------SSSS--SSSSSSSS-S-----
----------S----------S----S---------------SS---------S--S-----------------------
----------SS---------------------------SSSS-------------------------------------
-----S--------S----------------------------------S---------S--------S-----------
---------------------------------------S----------------------------------------
----------------------------S---------------------------------------------------
--S--------------------------------------------------------------------------S--
--------------------------------------------------------------------------------
-------------------------------------------------------------S------S-----------
---S----------------------------------------------------------------------------
---------S-----S----------------------------------------------------------------
----------------------S------------------------------------------------S-S------
-----------------------S--------------------------------------------------------
---------------------------------------S---------------S------------------------
--------------------------------------------------------------------------------
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---------------------------------------------S------S-S-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---S---------------S-------------------------------------------S----------------
----------------------------------------------------------S---------------------
-------------S------------------------------------S-----------------------------
------------------------------------------------S-------------------------------
-------------------------------------------------------------------------S------
-------------------------------------------------------------------S------------
-----SS-------------------------------------------------------------------------
--------------S-----------------------------S-----------------------------------
--S--------S----S--------------S------S-----------------------------------------
-----------------------------------------------------------------S--------------
------------------------------------------------S-----S---------S---------------
----------------------S-----S------S--------------------------S-------SS--------
------------------S------S-----------------------------S---------------------S--
---------S--------S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_2377
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-------------------------------------CCTTGCCAGAGAGCTCAAGG-----------------------
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>reverse_4211
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--------------------------------------------------ATTGGTGCTGAAGCTAGGGC----------
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>forward_3050
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----------------------------------------------------------------------ACGTGTTCTT
GGCTCCTCTG----------------------------------------------------------------------
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>reverse_5070
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-----------------------------GAACCACAAAAGGGTCCGCT-------------------------------
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--------------------------------------------
