Multiple sequence alignment - TraesCS3A01G099000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G099000 chr3A 100.000 3085 0 0 1 3085 64014561 64017645 0.000000e+00 5698.0
1 TraesCS3A01G099000 chr3A 100.000 525 0 0 3392 3916 64017952 64018476 0.000000e+00 970.0
2 TraesCS3A01G099000 chr3D 97.119 2534 64 4 551 3083 51089773 51092298 0.000000e+00 4266.0
3 TraesCS3A01G099000 chr3D 90.411 365 8 11 3552 3916 51092596 51092933 4.610000e-124 455.0
4 TraesCS3A01G099000 chr3D 94.366 71 4 0 3397 3467 51092355 51092425 4.140000e-20 110.0
5 TraesCS3A01G099000 chr3D 89.583 48 5 0 3507 3554 51092426 51092473 1.170000e-05 62.1
6 TraesCS3A01G099000 chr3B 95.946 1406 46 4 508 1908 82039740 82041139 0.000000e+00 2270.0
7 TraesCS3A01G099000 chr3B 98.069 1191 22 1 1895 3085 82042538 82043727 0.000000e+00 2071.0
8 TraesCS3A01G099000 chr3B 92.030 527 9 8 3392 3916 82043764 82044259 0.000000e+00 710.0
9 TraesCS3A01G099000 chr2B 87.719 228 22 3 1 222 785623677 785623450 1.080000e-65 261.0
10 TraesCS3A01G099000 chr2B 84.234 222 28 4 1 222 132859791 132860005 3.960000e-50 209.0
11 TraesCS3A01G099000 chr2B 83.700 227 30 4 1 222 309190473 309190697 1.430000e-49 207.0
12 TraesCS3A01G099000 chr2B 84.737 190 28 1 1 190 653253452 653253264 5.170000e-44 189.0
13 TraesCS3A01G099000 chr7D 86.842 228 25 3 1 223 178704911 178705138 2.340000e-62 250.0
14 TraesCS3A01G099000 chr5B 84.862 218 29 2 9 222 43156759 43156542 2.370000e-52 217.0
15 TraesCS3A01G099000 chr1A 83.260 227 26 5 1 225 320908282 320908498 8.580000e-47 198.0
16 TraesCS3A01G099000 chr1A 84.571 175 27 0 1 175 511152615 511152789 1.450000e-39 174.0
17 TraesCS3A01G099000 chr7B 85.227 176 25 1 2 177 686602205 686602031 3.110000e-41 180.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G099000 chr3A 64014561 64018476 3915 False 3334.000000 5698 100.000000 1 3916 2 chr3A.!!$F1 3915
1 TraesCS3A01G099000 chr3D 51089773 51092933 3160 False 1223.275000 4266 92.869750 551 3916 4 chr3D.!!$F1 3365
2 TraesCS3A01G099000 chr3B 82039740 82044259 4519 False 1683.666667 2270 95.348333 508 3916 3 chr3B.!!$F1 3408

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
317 318 0.035056 AATGTGCGAGGGGAGAAAGG 60.035 55.0 0.00 0.0 0.00 3.11 F
475 476 0.037046 ATAAAAAGGTCCGGTCGCGT 60.037 50.0 5.77 0.0 0.00 6.01 F
484 485 0.244450 TCCGGTCGCGTCAGTTATTT 59.756 50.0 5.77 0.0 0.00 1.40 F
981 987 0.255318 AAGGCCAGCAAGGAGATCAG 59.745 55.0 5.01 0.0 41.22 2.90 F
1324 1330 0.603707 CATCGTGAACCAGGTGCTGT 60.604 55.0 0.00 0.0 0.00 4.40 F
2090 3508 1.113788 ACAGCAAGGCAACAACATGT 58.886 45.0 0.00 0.0 41.41 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1299 1305 0.034756 CCTGGTTCACGATGTCCACA 59.965 55.000 0.00 0.0 0.00 4.17 R
1428 1434 0.183492 TGCAGACCAGGAAAGCAAGT 59.817 50.000 0.00 0.0 31.42 3.16 R
1932 3350 1.681076 GGTCGGGGGTGCTTAGAAA 59.319 57.895 0.00 0.0 0.00 2.52 R
2252 3670 2.693069 CACCTGATATCGAGGAATGCC 58.307 52.381 21.15 0.0 34.37 4.40 R
2447 3865 4.724262 GAGCCCTCGAAGCCTTTT 57.276 55.556 3.59 0.0 0.00 2.27 R
3505 4936 0.249953 TTGCTTTGCTGGCCATGTTG 60.250 50.000 5.51 0.0 0.00 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 3.443925 GCCCGAGCCCAAGAAAGC 61.444 66.667 0.00 0.00 0.00 3.51
27 28 2.751837 CCCGAGCCCAAGAAAGCC 60.752 66.667 0.00 0.00 0.00 4.35
28 29 2.751837 CCGAGCCCAAGAAAGCCC 60.752 66.667 0.00 0.00 0.00 5.19
29 30 3.127533 CGAGCCCAAGAAAGCCCG 61.128 66.667 0.00 0.00 0.00 6.13
30 31 2.351276 GAGCCCAAGAAAGCCCGA 59.649 61.111 0.00 0.00 0.00 5.14
31 32 2.034221 AGCCCAAGAAAGCCCGAC 59.966 61.111 0.00 0.00 0.00 4.79
32 33 2.282180 GCCCAAGAAAGCCCGACA 60.282 61.111 0.00 0.00 0.00 4.35
33 34 2.626780 GCCCAAGAAAGCCCGACAC 61.627 63.158 0.00 0.00 0.00 3.67
34 35 2.325082 CCCAAGAAAGCCCGACACG 61.325 63.158 0.00 0.00 0.00 4.49
63 64 3.066190 CCGGCCTGACCACGACTA 61.066 66.667 0.00 0.00 39.03 2.59
64 65 2.642254 CCGGCCTGACCACGACTAA 61.642 63.158 0.00 0.00 39.03 2.24
65 66 1.290955 CGGCCTGACCACGACTAAA 59.709 57.895 0.00 0.00 39.03 1.85
66 67 0.320073 CGGCCTGACCACGACTAAAA 60.320 55.000 0.00 0.00 39.03 1.52
67 68 1.874739 CGGCCTGACCACGACTAAAAA 60.875 52.381 0.00 0.00 39.03 1.94
68 69 2.433436 GGCCTGACCACGACTAAAAAT 58.567 47.619 0.00 0.00 38.86 1.82
69 70 2.161609 GGCCTGACCACGACTAAAAATG 59.838 50.000 0.00 0.00 38.86 2.32
70 71 2.812011 GCCTGACCACGACTAAAAATGT 59.188 45.455 0.00 0.00 0.00 2.71
71 72 3.364964 GCCTGACCACGACTAAAAATGTG 60.365 47.826 0.00 0.00 0.00 3.21
72 73 3.813166 CCTGACCACGACTAAAAATGTGT 59.187 43.478 0.00 0.00 0.00 3.72
73 74 4.274950 CCTGACCACGACTAAAAATGTGTT 59.725 41.667 0.00 0.00 0.00 3.32
74 75 5.220970 CCTGACCACGACTAAAAATGTGTTT 60.221 40.000 0.00 0.00 0.00 2.83
75 76 6.197364 TGACCACGACTAAAAATGTGTTTT 57.803 33.333 0.00 0.00 39.15 2.43
76 77 6.030849 TGACCACGACTAAAAATGTGTTTTG 58.969 36.000 0.00 0.00 37.59 2.44
77 78 5.956642 ACCACGACTAAAAATGTGTTTTGT 58.043 33.333 0.00 0.00 37.59 2.83
78 79 5.802956 ACCACGACTAAAAATGTGTTTTGTG 59.197 36.000 0.00 0.00 37.59 3.33
79 80 5.276161 CCACGACTAAAAATGTGTTTTGTGC 60.276 40.000 0.00 0.00 37.59 4.57
80 81 5.287274 CACGACTAAAAATGTGTTTTGTGCA 59.713 36.000 0.00 0.00 37.59 4.57
81 82 6.019961 CACGACTAAAAATGTGTTTTGTGCAT 60.020 34.615 0.00 0.00 37.59 3.96
82 83 7.166638 CACGACTAAAAATGTGTTTTGTGCATA 59.833 33.333 0.00 0.00 37.59 3.14
83 84 7.166804 ACGACTAAAAATGTGTTTTGTGCATAC 59.833 33.333 0.00 0.00 37.59 2.39
84 85 7.358023 CGACTAAAAATGTGTTTTGTGCATACC 60.358 37.037 0.00 0.00 37.59 2.73
85 86 6.704050 ACTAAAAATGTGTTTTGTGCATACCC 59.296 34.615 0.00 0.00 37.59 3.69
86 87 3.296322 AATGTGTTTTGTGCATACCCG 57.704 42.857 0.00 0.00 0.00 5.28
87 88 1.968704 TGTGTTTTGTGCATACCCGA 58.031 45.000 0.00 0.00 0.00 5.14
88 89 1.876799 TGTGTTTTGTGCATACCCGAG 59.123 47.619 0.00 0.00 0.00 4.63
89 90 2.147958 GTGTTTTGTGCATACCCGAGA 58.852 47.619 0.00 0.00 0.00 4.04
90 91 2.095919 GTGTTTTGTGCATACCCGAGAC 60.096 50.000 0.00 0.00 0.00 3.36
91 92 1.467342 GTTTTGTGCATACCCGAGACC 59.533 52.381 0.00 0.00 0.00 3.85
92 93 0.390603 TTTGTGCATACCCGAGACCG 60.391 55.000 0.00 0.00 0.00 4.79
102 103 4.135153 CGAGACCGGCCAGACCTG 62.135 72.222 0.00 0.00 35.61 4.00
103 104 4.459089 GAGACCGGCCAGACCTGC 62.459 72.222 0.00 0.00 35.61 4.85
120 121 2.434359 CCCGTCGGGCTCAGTTTC 60.434 66.667 19.48 0.00 35.35 2.78
121 122 2.434359 CCGTCGGGCTCAGTTTCC 60.434 66.667 2.34 0.00 0.00 3.13
122 123 2.342279 CGTCGGGCTCAGTTTCCA 59.658 61.111 0.00 0.00 0.00 3.53
123 124 1.738099 CGTCGGGCTCAGTTTCCAG 60.738 63.158 0.00 0.00 0.00 3.86
124 125 1.376037 GTCGGGCTCAGTTTCCAGG 60.376 63.158 0.00 0.00 0.00 4.45
125 126 2.747855 CGGGCTCAGTTTCCAGGC 60.748 66.667 0.00 0.00 34.44 4.85
127 128 2.361737 GGCTCAGTTTCCAGGCCC 60.362 66.667 0.00 0.00 37.12 5.80
128 129 2.747855 GCTCAGTTTCCAGGCCCG 60.748 66.667 0.00 0.00 0.00 6.13
129 130 3.068881 CTCAGTTTCCAGGCCCGA 58.931 61.111 0.00 0.00 0.00 5.14
130 131 1.078848 CTCAGTTTCCAGGCCCGAG 60.079 63.158 0.00 0.00 0.00 4.63
131 132 2.747855 CAGTTTCCAGGCCCGAGC 60.748 66.667 0.00 0.00 38.76 5.03
158 159 3.555324 TGGCACACTCGGGCTCAA 61.555 61.111 0.00 0.00 0.00 3.02
159 160 3.050275 GGCACACTCGGGCTCAAC 61.050 66.667 0.00 0.00 0.00 3.18
160 161 3.050275 GCACACTCGGGCTCAACC 61.050 66.667 0.00 0.00 37.93 3.77
161 162 2.743718 CACACTCGGGCTCAACCT 59.256 61.111 0.00 0.00 39.10 3.50
163 164 2.046892 CACTCGGGCTCAACCTGG 60.047 66.667 0.00 0.00 46.01 4.45
164 165 4.021925 ACTCGGGCTCAACCTGGC 62.022 66.667 0.00 0.00 46.01 4.85
165 166 4.785453 CTCGGGCTCAACCTGGCC 62.785 72.222 0.00 0.00 46.01 5.36
171 172 3.411517 CTCAACCTGGCCCGGGAT 61.412 66.667 29.31 0.00 33.36 3.85
172 173 2.938798 TCAACCTGGCCCGGGATT 60.939 61.111 29.31 6.61 33.36 3.01
173 174 2.037208 CAACCTGGCCCGGGATTT 59.963 61.111 29.31 5.58 33.36 2.17
174 175 1.609210 CAACCTGGCCCGGGATTTT 60.609 57.895 29.31 6.00 33.36 1.82
175 176 1.157513 AACCTGGCCCGGGATTTTT 59.842 52.632 29.31 6.84 33.36 1.94
176 177 1.191489 AACCTGGCCCGGGATTTTTG 61.191 55.000 29.31 9.28 33.36 2.44
177 178 2.358372 CCTGGCCCGGGATTTTTGG 61.358 63.158 29.31 12.79 29.82 3.28
178 179 2.284258 TGGCCCGGGATTTTTGGG 60.284 61.111 29.31 0.00 46.22 4.12
181 182 3.297904 CCCGGGATTTTTGGGCTG 58.702 61.111 18.48 0.00 35.82 4.85
182 183 2.358372 CCCGGGATTTTTGGGCTGG 61.358 63.158 18.48 0.00 35.82 4.85
183 184 1.304879 CCGGGATTTTTGGGCTGGA 60.305 57.895 0.00 0.00 0.00 3.86
184 185 0.687427 CCGGGATTTTTGGGCTGGAT 60.687 55.000 0.00 0.00 0.00 3.41
185 186 0.746659 CGGGATTTTTGGGCTGGATC 59.253 55.000 0.00 0.00 0.00 3.36
186 187 0.746659 GGGATTTTTGGGCTGGATCG 59.253 55.000 0.00 0.00 0.00 3.69
187 188 0.746659 GGATTTTTGGGCTGGATCGG 59.253 55.000 0.00 0.00 0.00 4.18
188 189 0.746659 GATTTTTGGGCTGGATCGGG 59.253 55.000 0.00 0.00 0.00 5.14
189 190 1.329913 ATTTTTGGGCTGGATCGGGC 61.330 55.000 2.94 2.94 34.35 6.13
224 225 2.481289 GCCTATGGCCAAGTCTATCC 57.519 55.000 10.96 0.00 44.06 2.59
225 226 1.003696 GCCTATGGCCAAGTCTATCCC 59.996 57.143 10.96 0.00 44.06 3.85
226 227 2.338809 CCTATGGCCAAGTCTATCCCA 58.661 52.381 10.96 0.00 0.00 4.37
227 228 2.711009 CCTATGGCCAAGTCTATCCCAA 59.289 50.000 10.96 0.00 0.00 4.12
228 229 3.138283 CCTATGGCCAAGTCTATCCCAAA 59.862 47.826 10.96 0.00 0.00 3.28
229 230 2.507407 TGGCCAAGTCTATCCCAAAC 57.493 50.000 0.61 0.00 0.00 2.93
230 231 1.005450 TGGCCAAGTCTATCCCAAACC 59.995 52.381 0.61 0.00 0.00 3.27
231 232 1.379527 GCCAAGTCTATCCCAAACCG 58.620 55.000 0.00 0.00 0.00 4.44
232 233 1.065709 GCCAAGTCTATCCCAAACCGA 60.066 52.381 0.00 0.00 0.00 4.69
233 234 2.617021 GCCAAGTCTATCCCAAACCGAA 60.617 50.000 0.00 0.00 0.00 4.30
234 235 3.007635 CCAAGTCTATCCCAAACCGAAC 58.992 50.000 0.00 0.00 0.00 3.95
235 236 2.667473 AGTCTATCCCAAACCGAACG 57.333 50.000 0.00 0.00 0.00 3.95
236 237 1.897802 AGTCTATCCCAAACCGAACGT 59.102 47.619 0.00 0.00 0.00 3.99
237 238 2.301009 AGTCTATCCCAAACCGAACGTT 59.699 45.455 0.00 0.00 35.70 3.99
238 239 2.669924 GTCTATCCCAAACCGAACGTTC 59.330 50.000 18.47 18.47 31.78 3.95
239 240 2.004733 CTATCCCAAACCGAACGTTCC 58.995 52.381 22.07 5.28 31.78 3.62
240 241 0.607217 ATCCCAAACCGAACGTTCCC 60.607 55.000 22.07 0.00 31.78 3.97
241 242 2.609759 CCCAAACCGAACGTTCCCG 61.610 63.158 22.07 14.59 40.83 5.14
242 243 2.250190 CAAACCGAACGTTCCCGC 59.750 61.111 22.07 0.00 37.70 6.13
243 244 2.203042 AAACCGAACGTTCCCGCA 60.203 55.556 22.07 0.00 37.70 5.69
244 245 1.818785 AAACCGAACGTTCCCGCAA 60.819 52.632 22.07 0.00 37.70 4.85
245 246 1.167781 AAACCGAACGTTCCCGCAAT 61.168 50.000 22.07 1.74 37.70 3.56
246 247 0.320596 AACCGAACGTTCCCGCAATA 60.321 50.000 22.07 0.00 37.70 1.90
247 248 0.108041 ACCGAACGTTCCCGCAATAT 60.108 50.000 22.07 0.00 37.70 1.28
248 249 0.580104 CCGAACGTTCCCGCAATATC 59.420 55.000 22.07 0.00 37.70 1.63
249 250 1.282817 CGAACGTTCCCGCAATATCA 58.717 50.000 22.07 0.00 37.70 2.15
250 251 1.661617 CGAACGTTCCCGCAATATCAA 59.338 47.619 22.07 0.00 37.70 2.57
251 252 2.285602 CGAACGTTCCCGCAATATCAAG 60.286 50.000 22.07 0.00 37.70 3.02
252 253 1.663695 ACGTTCCCGCAATATCAAGG 58.336 50.000 0.00 0.00 37.70 3.61
253 254 1.065709 ACGTTCCCGCAATATCAAGGT 60.066 47.619 0.00 0.00 37.70 3.50
254 255 1.597663 CGTTCCCGCAATATCAAGGTC 59.402 52.381 0.00 0.00 0.00 3.85
255 256 1.947456 GTTCCCGCAATATCAAGGTCC 59.053 52.381 0.00 0.00 0.00 4.46
256 257 1.208706 TCCCGCAATATCAAGGTCCA 58.791 50.000 0.00 0.00 0.00 4.02
257 258 1.562008 TCCCGCAATATCAAGGTCCAA 59.438 47.619 0.00 0.00 0.00 3.53
258 259 2.174639 TCCCGCAATATCAAGGTCCAAT 59.825 45.455 0.00 0.00 0.00 3.16
259 260 2.958355 CCCGCAATATCAAGGTCCAATT 59.042 45.455 0.00 0.00 0.00 2.32
260 261 3.384467 CCCGCAATATCAAGGTCCAATTT 59.616 43.478 0.00 0.00 0.00 1.82
261 262 4.141959 CCCGCAATATCAAGGTCCAATTTT 60.142 41.667 0.00 0.00 0.00 1.82
262 263 5.418676 CCGCAATATCAAGGTCCAATTTTT 58.581 37.500 0.00 0.00 0.00 1.94
263 264 6.406400 CCCGCAATATCAAGGTCCAATTTTTA 60.406 38.462 0.00 0.00 0.00 1.52
264 265 6.475402 CCGCAATATCAAGGTCCAATTTTTAC 59.525 38.462 0.00 0.00 0.00 2.01
265 266 7.257722 CGCAATATCAAGGTCCAATTTTTACT 58.742 34.615 0.00 0.00 0.00 2.24
266 267 8.402472 CGCAATATCAAGGTCCAATTTTTACTA 58.598 33.333 0.00 0.00 0.00 1.82
273 274 9.581289 TCAAGGTCCAATTTTTACTATTTCTGA 57.419 29.630 0.00 0.00 0.00 3.27
276 277 8.971073 AGGTCCAATTTTTACTATTTCTGATGG 58.029 33.333 0.00 0.00 0.00 3.51
277 278 8.749354 GGTCCAATTTTTACTATTTCTGATGGT 58.251 33.333 0.00 0.00 0.00 3.55
278 279 9.788960 GTCCAATTTTTACTATTTCTGATGGTC 57.211 33.333 0.00 0.00 0.00 4.02
279 280 8.673711 TCCAATTTTTACTATTTCTGATGGTCG 58.326 33.333 0.00 0.00 0.00 4.79
280 281 8.458843 CCAATTTTTACTATTTCTGATGGTCGT 58.541 33.333 0.00 0.00 0.00 4.34
281 282 9.840427 CAATTTTTACTATTTCTGATGGTCGTT 57.160 29.630 0.00 0.00 0.00 3.85
282 283 9.840427 AATTTTTACTATTTCTGATGGTCGTTG 57.160 29.630 0.00 0.00 0.00 4.10
283 284 7.972832 TTTTACTATTTCTGATGGTCGTTGT 57.027 32.000 0.00 0.00 0.00 3.32
284 285 6.961359 TTACTATTTCTGATGGTCGTTGTG 57.039 37.500 0.00 0.00 0.00 3.33
285 286 4.894784 ACTATTTCTGATGGTCGTTGTGT 58.105 39.130 0.00 0.00 0.00 3.72
286 287 5.305585 ACTATTTCTGATGGTCGTTGTGTT 58.694 37.500 0.00 0.00 0.00 3.32
287 288 4.749245 ATTTCTGATGGTCGTTGTGTTC 57.251 40.909 0.00 0.00 0.00 3.18
288 289 1.778334 TCTGATGGTCGTTGTGTTCG 58.222 50.000 0.00 0.00 0.00 3.95
289 290 1.338655 TCTGATGGTCGTTGTGTTCGA 59.661 47.619 0.00 0.00 34.91 3.71
290 291 1.721389 CTGATGGTCGTTGTGTTCGAG 59.279 52.381 0.00 0.00 37.99 4.04
291 292 1.338655 TGATGGTCGTTGTGTTCGAGA 59.661 47.619 0.00 0.00 37.99 4.04
292 293 1.986378 GATGGTCGTTGTGTTCGAGAG 59.014 52.381 0.00 0.00 37.99 3.20
293 294 1.026584 TGGTCGTTGTGTTCGAGAGA 58.973 50.000 0.00 0.00 37.99 3.10
305 306 2.194800 TCGAGAGAAGCTAATGTGCG 57.805 50.000 0.00 0.00 37.03 5.34
306 307 1.743394 TCGAGAGAAGCTAATGTGCGA 59.257 47.619 0.00 0.00 37.03 5.10
307 308 2.115595 CGAGAGAAGCTAATGTGCGAG 58.884 52.381 0.00 0.00 38.13 5.03
308 309 2.468831 GAGAGAAGCTAATGTGCGAGG 58.531 52.381 0.00 0.00 38.13 4.63
309 310 1.137872 AGAGAAGCTAATGTGCGAGGG 59.862 52.381 0.00 0.00 38.13 4.30
310 311 0.179000 AGAAGCTAATGTGCGAGGGG 59.821 55.000 0.00 0.00 38.13 4.79
311 312 0.178068 GAAGCTAATGTGCGAGGGGA 59.822 55.000 0.00 0.00 38.13 4.81
312 313 0.179000 AAGCTAATGTGCGAGGGGAG 59.821 55.000 0.00 0.00 38.13 4.30
313 314 0.687757 AGCTAATGTGCGAGGGGAGA 60.688 55.000 0.00 0.00 38.13 3.71
314 315 0.178068 GCTAATGTGCGAGGGGAGAA 59.822 55.000 0.00 0.00 0.00 2.87
315 316 1.406887 GCTAATGTGCGAGGGGAGAAA 60.407 52.381 0.00 0.00 0.00 2.52
316 317 2.555199 CTAATGTGCGAGGGGAGAAAG 58.445 52.381 0.00 0.00 0.00 2.62
317 318 0.035056 AATGTGCGAGGGGAGAAAGG 60.035 55.000 0.00 0.00 0.00 3.11
318 319 1.915078 ATGTGCGAGGGGAGAAAGGG 61.915 60.000 0.00 0.00 0.00 3.95
319 320 3.009115 TGCGAGGGGAGAAAGGGG 61.009 66.667 0.00 0.00 0.00 4.79
320 321 3.798511 GCGAGGGGAGAAAGGGGG 61.799 72.222 0.00 0.00 0.00 5.40
321 322 3.798511 CGAGGGGAGAAAGGGGGC 61.799 72.222 0.00 0.00 0.00 5.80
322 323 2.614013 GAGGGGAGAAAGGGGGCA 60.614 66.667 0.00 0.00 0.00 5.36
323 324 2.121042 AGGGGAGAAAGGGGGCAA 60.121 61.111 0.00 0.00 0.00 4.52
324 325 2.216782 GAGGGGAGAAAGGGGGCAAG 62.217 65.000 0.00 0.00 0.00 4.01
325 326 2.360585 GGGAGAAAGGGGGCAAGG 59.639 66.667 0.00 0.00 0.00 3.61
326 327 2.238701 GGGAGAAAGGGGGCAAGGA 61.239 63.158 0.00 0.00 0.00 3.36
327 328 1.000771 GGAGAAAGGGGGCAAGGAC 60.001 63.158 0.00 0.00 0.00 3.85
328 329 1.377333 GAGAAAGGGGGCAAGGACG 60.377 63.158 0.00 0.00 0.00 4.79
329 330 1.838073 GAGAAAGGGGGCAAGGACGA 61.838 60.000 0.00 0.00 0.00 4.20
330 331 1.208165 AGAAAGGGGGCAAGGACGAT 61.208 55.000 0.00 0.00 0.00 3.73
331 332 1.000896 AAAGGGGGCAAGGACGATG 60.001 57.895 0.00 0.00 0.00 3.84
332 333 2.499303 AAAGGGGGCAAGGACGATGG 62.499 60.000 0.00 0.00 0.00 3.51
335 336 4.467084 GGGCAAGGACGATGGCGA 62.467 66.667 0.00 0.00 43.72 5.54
336 337 2.892425 GGCAAGGACGATGGCGAG 60.892 66.667 0.00 0.00 41.64 5.03
337 338 2.892425 GCAAGGACGATGGCGAGG 60.892 66.667 0.00 0.00 41.64 4.63
338 339 2.892640 CAAGGACGATGGCGAGGA 59.107 61.111 0.00 0.00 41.64 3.71
339 340 1.227089 CAAGGACGATGGCGAGGAG 60.227 63.158 0.00 0.00 41.64 3.69
340 341 1.379977 AAGGACGATGGCGAGGAGA 60.380 57.895 0.00 0.00 41.64 3.71
341 342 0.970937 AAGGACGATGGCGAGGAGAA 60.971 55.000 0.00 0.00 41.64 2.87
342 343 1.066587 GGACGATGGCGAGGAGAAG 59.933 63.158 0.00 0.00 41.64 2.85
343 344 1.066587 GACGATGGCGAGGAGAAGG 59.933 63.158 0.00 0.00 41.64 3.46
344 345 2.356818 GACGATGGCGAGGAGAAGGG 62.357 65.000 0.00 0.00 41.64 3.95
345 346 2.825264 GATGGCGAGGAGAAGGGG 59.175 66.667 0.00 0.00 0.00 4.79
346 347 2.041265 ATGGCGAGGAGAAGGGGT 59.959 61.111 0.00 0.00 0.00 4.95
347 348 2.034048 GATGGCGAGGAGAAGGGGTC 62.034 65.000 0.00 0.00 0.00 4.46
348 349 3.839432 GGCGAGGAGAAGGGGTCG 61.839 72.222 0.00 0.00 35.51 4.79
349 350 3.839432 GCGAGGAGAAGGGGTCGG 61.839 72.222 0.00 0.00 32.99 4.79
350 351 3.148279 CGAGGAGAAGGGGTCGGG 61.148 72.222 0.00 0.00 0.00 5.14
351 352 2.363361 GAGGAGAAGGGGTCGGGA 59.637 66.667 0.00 0.00 0.00 5.14
352 353 1.305887 GAGGAGAAGGGGTCGGGAA 60.306 63.158 0.00 0.00 0.00 3.97
353 354 0.908180 GAGGAGAAGGGGTCGGGAAA 60.908 60.000 0.00 0.00 0.00 3.13
354 355 0.910088 AGGAGAAGGGGTCGGGAAAG 60.910 60.000 0.00 0.00 0.00 2.62
355 356 1.602771 GAGAAGGGGTCGGGAAAGG 59.397 63.158 0.00 0.00 0.00 3.11
356 357 1.151877 AGAAGGGGTCGGGAAAGGT 60.152 57.895 0.00 0.00 0.00 3.50
357 358 1.002502 GAAGGGGTCGGGAAAGGTG 60.003 63.158 0.00 0.00 0.00 4.00
358 359 2.479820 GAAGGGGTCGGGAAAGGTGG 62.480 65.000 0.00 0.00 0.00 4.61
359 360 4.735358 GGGGTCGGGAAAGGTGGC 62.735 72.222 0.00 0.00 0.00 5.01
360 361 3.961414 GGGTCGGGAAAGGTGGCA 61.961 66.667 0.00 0.00 0.00 4.92
361 362 2.355115 GGTCGGGAAAGGTGGCAT 59.645 61.111 0.00 0.00 0.00 4.40
362 363 2.046285 GGTCGGGAAAGGTGGCATG 61.046 63.158 0.00 0.00 0.00 4.06
363 364 2.046285 GTCGGGAAAGGTGGCATGG 61.046 63.158 0.00 0.00 0.00 3.66
364 365 2.227757 TCGGGAAAGGTGGCATGGA 61.228 57.895 0.00 0.00 0.00 3.41
365 366 1.750399 CGGGAAAGGTGGCATGGAG 60.750 63.158 0.00 0.00 0.00 3.86
366 367 1.380380 GGGAAAGGTGGCATGGAGG 60.380 63.158 0.00 0.00 0.00 4.30
367 368 1.691219 GGAAAGGTGGCATGGAGGA 59.309 57.895 0.00 0.00 0.00 3.71
368 369 0.394899 GGAAAGGTGGCATGGAGGAG 60.395 60.000 0.00 0.00 0.00 3.69
369 370 0.620556 GAAAGGTGGCATGGAGGAGA 59.379 55.000 0.00 0.00 0.00 3.71
370 371 1.004745 GAAAGGTGGCATGGAGGAGAA 59.995 52.381 0.00 0.00 0.00 2.87
371 372 1.075601 AAGGTGGCATGGAGGAGAAA 58.924 50.000 0.00 0.00 0.00 2.52
372 373 1.302907 AGGTGGCATGGAGGAGAAAT 58.697 50.000 0.00 0.00 0.00 2.17
373 374 1.064166 AGGTGGCATGGAGGAGAAATG 60.064 52.381 0.00 0.00 0.00 2.32
374 375 1.064463 GGTGGCATGGAGGAGAAATGA 60.064 52.381 0.00 0.00 0.00 2.57
375 376 2.621407 GGTGGCATGGAGGAGAAATGAA 60.621 50.000 0.00 0.00 0.00 2.57
376 377 2.686915 GTGGCATGGAGGAGAAATGAAG 59.313 50.000 0.00 0.00 0.00 3.02
377 378 2.305009 GGCATGGAGGAGAAATGAAGG 58.695 52.381 0.00 0.00 0.00 3.46
378 379 1.680207 GCATGGAGGAGAAATGAAGGC 59.320 52.381 0.00 0.00 0.00 4.35
379 380 2.947243 GCATGGAGGAGAAATGAAGGCA 60.947 50.000 0.00 0.00 0.00 4.75
380 381 2.795231 TGGAGGAGAAATGAAGGCAG 57.205 50.000 0.00 0.00 0.00 4.85
381 382 1.340405 TGGAGGAGAAATGAAGGCAGC 60.340 52.381 0.00 0.00 0.00 5.25
382 383 1.340405 GGAGGAGAAATGAAGGCAGCA 60.340 52.381 0.00 0.00 0.00 4.41
383 384 2.440409 GAGGAGAAATGAAGGCAGCAA 58.560 47.619 0.00 0.00 0.00 3.91
384 385 2.422832 GAGGAGAAATGAAGGCAGCAAG 59.577 50.000 0.00 0.00 0.00 4.01
385 386 1.475682 GGAGAAATGAAGGCAGCAAGG 59.524 52.381 0.00 0.00 0.00 3.61
386 387 1.475682 GAGAAATGAAGGCAGCAAGGG 59.524 52.381 0.00 0.00 0.00 3.95
387 388 1.076024 AGAAATGAAGGCAGCAAGGGA 59.924 47.619 0.00 0.00 0.00 4.20
388 389 1.895131 GAAATGAAGGCAGCAAGGGAA 59.105 47.619 0.00 0.00 0.00 3.97
389 390 2.014010 AATGAAGGCAGCAAGGGAAA 57.986 45.000 0.00 0.00 0.00 3.13
390 391 1.553706 ATGAAGGCAGCAAGGGAAAG 58.446 50.000 0.00 0.00 0.00 2.62
391 392 0.540365 TGAAGGCAGCAAGGGAAAGG 60.540 55.000 0.00 0.00 0.00 3.11
392 393 1.228988 AAGGCAGCAAGGGAAAGGG 60.229 57.895 0.00 0.00 0.00 3.95
393 394 2.681421 GGCAGCAAGGGAAAGGGG 60.681 66.667 0.00 0.00 0.00 4.79
394 395 2.440599 GCAGCAAGGGAAAGGGGA 59.559 61.111 0.00 0.00 0.00 4.81
395 396 1.979155 GCAGCAAGGGAAAGGGGAC 60.979 63.158 0.00 0.00 0.00 4.46
396 397 1.675641 CAGCAAGGGAAAGGGGACG 60.676 63.158 0.00 0.00 0.00 4.79
397 398 2.361230 GCAAGGGAAAGGGGACGG 60.361 66.667 0.00 0.00 0.00 4.79
398 399 2.902457 GCAAGGGAAAGGGGACGGA 61.902 63.158 0.00 0.00 0.00 4.69
399 400 1.765074 CAAGGGAAAGGGGACGGAA 59.235 57.895 0.00 0.00 0.00 4.30
400 401 0.111639 CAAGGGAAAGGGGACGGAAA 59.888 55.000 0.00 0.00 0.00 3.13
401 402 1.081481 AAGGGAAAGGGGACGGAAAT 58.919 50.000 0.00 0.00 0.00 2.17
402 403 0.331616 AGGGAAAGGGGACGGAAATG 59.668 55.000 0.00 0.00 0.00 2.32
403 404 0.330267 GGGAAAGGGGACGGAAATGA 59.670 55.000 0.00 0.00 0.00 2.57
404 405 1.682087 GGGAAAGGGGACGGAAATGAG 60.682 57.143 0.00 0.00 0.00 2.90
405 406 1.682087 GGAAAGGGGACGGAAATGAGG 60.682 57.143 0.00 0.00 0.00 3.86
406 407 0.331616 AAAGGGGACGGAAATGAGGG 59.668 55.000 0.00 0.00 0.00 4.30
407 408 0.845102 AAGGGGACGGAAATGAGGGT 60.845 55.000 0.00 0.00 0.00 4.34
408 409 1.077716 GGGGACGGAAATGAGGGTG 60.078 63.158 0.00 0.00 0.00 4.61
409 410 1.749258 GGGACGGAAATGAGGGTGC 60.749 63.158 0.00 0.00 0.00 5.01
410 411 1.002624 GGACGGAAATGAGGGTGCA 60.003 57.895 0.00 0.00 0.00 4.57
411 412 0.608035 GGACGGAAATGAGGGTGCAA 60.608 55.000 0.00 0.00 0.00 4.08
412 413 1.243902 GACGGAAATGAGGGTGCAAA 58.756 50.000 0.00 0.00 0.00 3.68
413 414 1.611491 GACGGAAATGAGGGTGCAAAA 59.389 47.619 0.00 0.00 0.00 2.44
414 415 1.613437 ACGGAAATGAGGGTGCAAAAG 59.387 47.619 0.00 0.00 0.00 2.27
415 416 1.613437 CGGAAATGAGGGTGCAAAAGT 59.387 47.619 0.00 0.00 0.00 2.66
416 417 2.607771 CGGAAATGAGGGTGCAAAAGTG 60.608 50.000 0.00 0.00 0.00 3.16
417 418 2.365293 GGAAATGAGGGTGCAAAAGTGT 59.635 45.455 0.00 0.00 0.00 3.55
418 419 3.383761 GAAATGAGGGTGCAAAAGTGTG 58.616 45.455 0.00 0.00 0.00 3.82
419 420 2.363306 ATGAGGGTGCAAAAGTGTGA 57.637 45.000 0.00 0.00 0.00 3.58
420 421 2.363306 TGAGGGTGCAAAAGTGTGAT 57.637 45.000 0.00 0.00 0.00 3.06
421 422 1.955778 TGAGGGTGCAAAAGTGTGATG 59.044 47.619 0.00 0.00 0.00 3.07
422 423 1.270550 GAGGGTGCAAAAGTGTGATGG 59.729 52.381 0.00 0.00 0.00 3.51
423 424 1.133513 AGGGTGCAAAAGTGTGATGGA 60.134 47.619 0.00 0.00 0.00 3.41
424 425 1.270550 GGGTGCAAAAGTGTGATGGAG 59.729 52.381 0.00 0.00 0.00 3.86
425 426 1.956477 GGTGCAAAAGTGTGATGGAGT 59.044 47.619 0.00 0.00 0.00 3.85
426 427 2.362077 GGTGCAAAAGTGTGATGGAGTT 59.638 45.455 0.00 0.00 0.00 3.01
427 428 3.181476 GGTGCAAAAGTGTGATGGAGTTT 60.181 43.478 0.00 0.00 0.00 2.66
428 429 4.044426 GTGCAAAAGTGTGATGGAGTTTC 58.956 43.478 0.00 0.00 0.00 2.78
429 430 3.068024 TGCAAAAGTGTGATGGAGTTTCC 59.932 43.478 0.00 0.00 36.96 3.13
430 431 3.552890 GCAAAAGTGTGATGGAGTTTCCC 60.553 47.826 0.00 0.00 35.03 3.97
431 432 2.185004 AAGTGTGATGGAGTTTCCCG 57.815 50.000 0.00 0.00 35.03 5.14
432 433 0.321653 AGTGTGATGGAGTTTCCCGC 60.322 55.000 0.00 0.00 35.03 6.13
433 434 0.605319 GTGTGATGGAGTTTCCCGCA 60.605 55.000 0.00 0.00 35.03 5.69
434 435 0.109532 TGTGATGGAGTTTCCCGCAA 59.890 50.000 0.00 0.00 35.03 4.85
435 436 1.243902 GTGATGGAGTTTCCCGCAAA 58.756 50.000 0.00 0.00 35.03 3.68
436 437 1.611491 GTGATGGAGTTTCCCGCAAAA 59.389 47.619 0.00 0.00 35.03 2.44
437 438 2.035321 GTGATGGAGTTTCCCGCAAAAA 59.965 45.455 0.00 0.00 35.03 1.94
464 465 9.965824 AAGTGTGATGTAGTTTTCATAAAAAGG 57.034 29.630 0.00 0.00 35.10 3.11
465 466 9.131791 AGTGTGATGTAGTTTTCATAAAAAGGT 57.868 29.630 0.00 0.00 35.10 3.50
466 467 9.394477 GTGTGATGTAGTTTTCATAAAAAGGTC 57.606 33.333 0.00 0.00 35.10 3.85
467 468 8.573035 TGTGATGTAGTTTTCATAAAAAGGTCC 58.427 33.333 0.00 0.00 35.10 4.46
468 469 7.749126 GTGATGTAGTTTTCATAAAAAGGTCCG 59.251 37.037 0.00 0.00 35.10 4.79
469 470 6.563222 TGTAGTTTTCATAAAAAGGTCCGG 57.437 37.500 0.00 0.00 35.10 5.14
470 471 6.063404 TGTAGTTTTCATAAAAAGGTCCGGT 58.937 36.000 0.00 0.00 35.10 5.28
471 472 5.700722 AGTTTTCATAAAAAGGTCCGGTC 57.299 39.130 0.00 0.00 35.10 4.79
472 473 4.214758 AGTTTTCATAAAAAGGTCCGGTCG 59.785 41.667 0.00 0.00 35.10 4.79
473 474 1.729284 TCATAAAAAGGTCCGGTCGC 58.271 50.000 0.00 0.00 0.00 5.19
474 475 0.372334 CATAAAAAGGTCCGGTCGCG 59.628 55.000 0.00 0.00 0.00 5.87
475 476 0.037046 ATAAAAAGGTCCGGTCGCGT 60.037 50.000 5.77 0.00 0.00 6.01
476 477 0.667184 TAAAAAGGTCCGGTCGCGTC 60.667 55.000 5.77 0.00 0.00 5.19
477 478 2.647680 AAAAAGGTCCGGTCGCGTCA 62.648 55.000 5.77 0.00 0.00 4.35
478 479 3.569049 AAAGGTCCGGTCGCGTCAG 62.569 63.158 5.77 0.06 0.00 3.51
480 481 4.353437 GGTCCGGTCGCGTCAGTT 62.353 66.667 5.77 0.00 0.00 3.16
481 482 2.562912 GTCCGGTCGCGTCAGTTA 59.437 61.111 5.77 0.00 0.00 2.24
482 483 1.138247 GTCCGGTCGCGTCAGTTAT 59.862 57.895 5.77 0.00 0.00 1.89
483 484 0.457337 GTCCGGTCGCGTCAGTTATT 60.457 55.000 5.77 0.00 0.00 1.40
484 485 0.244450 TCCGGTCGCGTCAGTTATTT 59.756 50.000 5.77 0.00 0.00 1.40
485 486 0.643820 CCGGTCGCGTCAGTTATTTC 59.356 55.000 5.77 0.00 0.00 2.17
486 487 0.293723 CGGTCGCGTCAGTTATTTCG 59.706 55.000 5.77 0.00 0.00 3.46
487 488 0.643820 GGTCGCGTCAGTTATTTCGG 59.356 55.000 5.77 0.00 0.00 4.30
488 489 1.343506 GTCGCGTCAGTTATTTCGGT 58.656 50.000 5.77 0.00 0.00 4.69
489 490 2.518949 GTCGCGTCAGTTATTTCGGTA 58.481 47.619 5.77 0.00 0.00 4.02
490 491 2.277316 GTCGCGTCAGTTATTTCGGTAC 59.723 50.000 5.77 0.00 0.00 3.34
503 504 4.672251 GGTACGGAGGGAGTAGCA 57.328 61.111 1.36 0.00 40.91 3.49
504 505 3.128681 GGTACGGAGGGAGTAGCAT 57.871 57.895 1.36 0.00 40.91 3.79
505 506 1.411041 GGTACGGAGGGAGTAGCATT 58.589 55.000 1.36 0.00 40.91 3.56
506 507 1.761198 GGTACGGAGGGAGTAGCATTT 59.239 52.381 1.36 0.00 40.91 2.32
518 519 1.929836 GTAGCATTTCTCTGCCAGACG 59.070 52.381 0.00 0.00 43.33 4.18
532 533 5.828328 TCTGCCAGACGAAGAGAAGATTATA 59.172 40.000 0.00 0.00 0.00 0.98
533 534 5.833082 TGCCAGACGAAGAGAAGATTATAC 58.167 41.667 0.00 0.00 0.00 1.47
536 538 6.367421 CCAGACGAAGAGAAGATTATACTCG 58.633 44.000 0.00 0.00 36.03 4.18
578 584 3.914426 AGAGAAGGATAAATGGCGTGT 57.086 42.857 0.00 0.00 0.00 4.49
676 682 1.734388 GCCACGGCACAAGTTTCCTT 61.734 55.000 2.36 0.00 41.49 3.36
738 744 7.597369 TGAGTTTGAAACGCGTGCTATATATAT 59.403 33.333 14.98 0.00 36.23 0.86
844 850 7.009550 TCAGCATCTAGACCAGATAAATCTCT 58.990 38.462 0.00 0.00 42.40 3.10
845 851 7.176515 TCAGCATCTAGACCAGATAAATCTCTC 59.823 40.741 0.00 0.00 42.40 3.20
846 852 6.437162 AGCATCTAGACCAGATAAATCTCTCC 59.563 42.308 0.00 0.00 42.40 3.71
847 853 6.350949 GCATCTAGACCAGATAAATCTCTCCC 60.351 46.154 0.00 0.00 42.40 4.30
848 854 6.538209 TCTAGACCAGATAAATCTCTCCCT 57.462 41.667 0.00 0.00 34.22 4.20
849 855 6.548321 TCTAGACCAGATAAATCTCTCCCTC 58.452 44.000 0.00 0.00 34.22 4.30
850 856 4.488770 AGACCAGATAAATCTCTCCCTCC 58.511 47.826 0.00 0.00 34.22 4.30
851 857 4.078336 AGACCAGATAAATCTCTCCCTCCA 60.078 45.833 0.00 0.00 34.22 3.86
852 858 4.837218 ACCAGATAAATCTCTCCCTCCAT 58.163 43.478 0.00 0.00 34.22 3.41
977 983 4.584638 TTATAAAAGGCCAGCAAGGAGA 57.415 40.909 5.01 0.00 41.22 3.71
981 987 0.255318 AAGGCCAGCAAGGAGATCAG 59.745 55.000 5.01 0.00 41.22 2.90
1040 1046 1.035139 GATGCATGGGGTTGGATCAC 58.965 55.000 2.46 0.00 42.22 3.06
1299 1305 1.338973 CAAGACATGGTGCAGCTGTTT 59.661 47.619 18.08 10.90 0.00 2.83
1324 1330 0.603707 CATCGTGAACCAGGTGCTGT 60.604 55.000 0.00 0.00 0.00 4.40
1428 1434 4.447724 GCGTTCAACATAGTCTTCTTGTCA 59.552 41.667 0.00 0.00 0.00 3.58
1616 1622 2.040544 CGGTGACCAACTGGATGGC 61.041 63.158 1.11 0.00 44.75 4.40
1932 3350 5.163622 CCATTCTCTTTGTCGCATTAACCAT 60.164 40.000 0.00 0.00 0.00 3.55
1946 3364 2.231716 AACCATTTCTAAGCACCCCC 57.768 50.000 0.00 0.00 0.00 5.40
2051 3469 7.554959 ACAACTTAGATCCTTGGAAGAGTAA 57.445 36.000 0.00 0.00 0.00 2.24
2090 3508 1.113788 ACAGCAAGGCAACAACATGT 58.886 45.000 0.00 0.00 41.41 3.21
2133 3551 1.484240 GATCTTAGCTGTGACTGGGCT 59.516 52.381 0.00 0.00 39.74 5.19
2134 3552 2.231716 TCTTAGCTGTGACTGGGCTA 57.768 50.000 0.00 0.00 37.50 3.93
2447 3865 1.619827 ACCCACGAGTTCGGTATTGAA 59.380 47.619 6.48 0.00 44.95 2.69
2450 3868 3.499157 CCCACGAGTTCGGTATTGAAAAA 59.501 43.478 6.48 0.00 44.95 1.94
2456 3874 5.372547 AGTTCGGTATTGAAAAAGGCTTC 57.627 39.130 0.00 0.00 0.00 3.86
2505 3923 0.471780 TGGTCTCAAGGCCTCTGTCA 60.472 55.000 5.23 0.00 0.00 3.58
3471 4902 7.712204 TCTGTGTATGTACCACTTTATCTCA 57.288 36.000 3.00 0.00 0.00 3.27
3472 4903 8.129496 TCTGTGTATGTACCACTTTATCTCAA 57.871 34.615 3.00 0.00 0.00 3.02
3505 4936 7.277760 ACTTGAGTTCAACCAAACAAATAAAGC 59.722 33.333 0.00 0.00 0.00 3.51
3513 4944 4.514816 ACCAAACAAATAAAGCAACATGGC 59.485 37.500 0.00 0.00 0.00 4.40
3522 4953 2.030958 GCAACATGGCCAGCAAAGC 61.031 57.895 13.05 7.95 0.00 3.51
3822 5381 8.918202 ATGTAACTTCAACTTTGGAGTAATCA 57.082 30.769 3.24 4.48 46.12 2.57
3823 5382 8.918202 TGTAACTTCAACTTTGGAGTAATCAT 57.082 30.769 3.24 0.00 46.12 2.45
3827 5386 9.520515 AACTTCAACTTTGGAGTAATCATATGT 57.479 29.630 3.24 0.00 46.12 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 3.443925 GCTTTCTTGGGCTCGGGC 61.444 66.667 0.00 0.00 37.82 6.13
10 11 2.751837 GGCTTTCTTGGGCTCGGG 60.752 66.667 0.00 0.00 0.00 5.14
11 12 2.751837 GGGCTTTCTTGGGCTCGG 60.752 66.667 0.00 0.00 0.00 4.63
12 13 3.127533 CGGGCTTTCTTGGGCTCG 61.128 66.667 0.00 0.00 45.78 5.03
13 14 2.041115 GTCGGGCTTTCTTGGGCTC 61.041 63.158 0.00 0.00 0.00 4.70
14 15 2.034221 GTCGGGCTTTCTTGGGCT 59.966 61.111 0.00 0.00 0.00 5.19
15 16 2.282180 TGTCGGGCTTTCTTGGGC 60.282 61.111 0.00 0.00 0.00 5.36
16 17 2.325082 CGTGTCGGGCTTTCTTGGG 61.325 63.158 0.00 0.00 0.00 4.12
17 18 2.325082 CCGTGTCGGGCTTTCTTGG 61.325 63.158 0.00 0.00 44.15 3.61
18 19 3.253955 CCGTGTCGGGCTTTCTTG 58.746 61.111 0.00 0.00 44.15 3.02
46 47 2.162338 TTTAGTCGTGGTCAGGCCGG 62.162 60.000 0.00 0.00 41.21 6.13
47 48 0.320073 TTTTAGTCGTGGTCAGGCCG 60.320 55.000 0.00 0.00 41.21 6.13
48 49 1.886886 TTTTTAGTCGTGGTCAGGCC 58.113 50.000 0.00 0.00 37.90 5.19
49 50 2.812011 ACATTTTTAGTCGTGGTCAGGC 59.188 45.455 0.00 0.00 0.00 4.85
50 51 3.813166 ACACATTTTTAGTCGTGGTCAGG 59.187 43.478 0.00 0.00 33.62 3.86
51 52 5.418310 AACACATTTTTAGTCGTGGTCAG 57.582 39.130 0.00 0.00 33.62 3.51
52 53 5.821516 AAACACATTTTTAGTCGTGGTCA 57.178 34.783 0.00 0.00 33.62 4.02
53 54 6.020995 CACAAAACACATTTTTAGTCGTGGTC 60.021 38.462 0.00 0.00 35.79 4.02
54 55 5.802956 CACAAAACACATTTTTAGTCGTGGT 59.197 36.000 0.00 0.00 35.79 4.16
55 56 5.276161 GCACAAAACACATTTTTAGTCGTGG 60.276 40.000 0.00 0.00 35.79 4.94
56 57 5.287274 TGCACAAAACACATTTTTAGTCGTG 59.713 36.000 0.00 0.00 35.79 4.35
57 58 5.403246 TGCACAAAACACATTTTTAGTCGT 58.597 33.333 0.00 0.00 35.79 4.34
58 59 5.940603 TGCACAAAACACATTTTTAGTCG 57.059 34.783 0.00 0.00 35.79 4.18
59 60 7.095816 GGGTATGCACAAAACACATTTTTAGTC 60.096 37.037 0.00 0.00 35.79 2.59
60 61 6.704050 GGGTATGCACAAAACACATTTTTAGT 59.296 34.615 0.00 0.00 35.79 2.24
61 62 6.128956 CGGGTATGCACAAAACACATTTTTAG 60.129 38.462 0.00 0.00 35.79 1.85
62 63 5.692204 CGGGTATGCACAAAACACATTTTTA 59.308 36.000 0.00 0.00 35.79 1.52
63 64 4.509600 CGGGTATGCACAAAACACATTTTT 59.490 37.500 0.00 0.00 35.79 1.94
64 65 4.054671 CGGGTATGCACAAAACACATTTT 58.945 39.130 0.00 0.00 38.61 1.82
65 66 3.319405 TCGGGTATGCACAAAACACATTT 59.681 39.130 0.00 0.00 0.00 2.32
66 67 2.887783 TCGGGTATGCACAAAACACATT 59.112 40.909 0.00 0.00 0.00 2.71
67 68 2.487762 CTCGGGTATGCACAAAACACAT 59.512 45.455 0.00 0.00 0.00 3.21
68 69 1.876799 CTCGGGTATGCACAAAACACA 59.123 47.619 0.00 0.00 0.00 3.72
69 70 2.095919 GTCTCGGGTATGCACAAAACAC 60.096 50.000 0.00 0.00 0.00 3.32
70 71 2.147958 GTCTCGGGTATGCACAAAACA 58.852 47.619 0.00 0.00 0.00 2.83
71 72 1.467342 GGTCTCGGGTATGCACAAAAC 59.533 52.381 0.00 0.00 0.00 2.43
72 73 1.816074 GGTCTCGGGTATGCACAAAA 58.184 50.000 0.00 0.00 0.00 2.44
73 74 0.390603 CGGTCTCGGGTATGCACAAA 60.391 55.000 0.00 0.00 0.00 2.83
74 75 1.216977 CGGTCTCGGGTATGCACAA 59.783 57.895 0.00 0.00 0.00 3.33
75 76 2.889617 CGGTCTCGGGTATGCACA 59.110 61.111 0.00 0.00 0.00 4.57
85 86 4.135153 CAGGTCTGGCCGGTCTCG 62.135 72.222 12.43 0.00 43.70 4.04
86 87 4.459089 GCAGGTCTGGCCGGTCTC 62.459 72.222 12.43 3.60 43.70 3.36
104 105 2.434359 GGAAACTGAGCCCGACGG 60.434 66.667 6.99 6.99 0.00 4.79
105 106 1.738099 CTGGAAACTGAGCCCGACG 60.738 63.158 0.00 0.00 0.00 5.12
106 107 1.376037 CCTGGAAACTGAGCCCGAC 60.376 63.158 0.00 0.00 0.00 4.79
107 108 3.068881 CCTGGAAACTGAGCCCGA 58.931 61.111 0.00 0.00 0.00 5.14
108 109 2.747855 GCCTGGAAACTGAGCCCG 60.748 66.667 0.00 0.00 0.00 6.13
109 110 2.361737 GGCCTGGAAACTGAGCCC 60.362 66.667 0.00 0.00 38.66 5.19
110 111 2.361737 GGGCCTGGAAACTGAGCC 60.362 66.667 0.84 0.00 41.54 4.70
111 112 2.747855 CGGGCCTGGAAACTGAGC 60.748 66.667 2.57 0.00 0.00 4.26
112 113 1.078848 CTCGGGCCTGGAAACTGAG 60.079 63.158 12.87 2.88 0.00 3.35
113 114 3.068881 CTCGGGCCTGGAAACTGA 58.931 61.111 12.87 0.00 0.00 3.41
114 115 2.747855 GCTCGGGCCTGGAAACTG 60.748 66.667 12.87 0.00 0.00 3.16
136 137 2.124983 CCCGAGTGTGCCATCAGG 60.125 66.667 0.00 0.00 38.23 3.86
137 138 2.821366 GCCCGAGTGTGCCATCAG 60.821 66.667 0.00 0.00 0.00 2.90
138 139 3.315142 GAGCCCGAGTGTGCCATCA 62.315 63.158 0.00 0.00 0.00 3.07
139 140 2.512515 GAGCCCGAGTGTGCCATC 60.513 66.667 0.00 0.00 0.00 3.51
140 141 2.894257 TTGAGCCCGAGTGTGCCAT 61.894 57.895 0.00 0.00 0.00 4.40
141 142 3.555324 TTGAGCCCGAGTGTGCCA 61.555 61.111 0.00 0.00 0.00 4.92
142 143 3.050275 GTTGAGCCCGAGTGTGCC 61.050 66.667 0.00 0.00 0.00 5.01
143 144 3.050275 GGTTGAGCCCGAGTGTGC 61.050 66.667 0.00 0.00 0.00 4.57
144 145 1.669115 CAGGTTGAGCCCGAGTGTG 60.669 63.158 0.00 0.00 38.26 3.82
145 146 2.743718 CAGGTTGAGCCCGAGTGT 59.256 61.111 0.00 0.00 38.26 3.55
146 147 2.046892 CCAGGTTGAGCCCGAGTG 60.047 66.667 0.00 0.00 38.26 3.51
147 148 4.021925 GCCAGGTTGAGCCCGAGT 62.022 66.667 0.00 0.00 38.26 4.18
148 149 4.785453 GGCCAGGTTGAGCCCGAG 62.785 72.222 0.00 0.00 43.76 4.63
154 155 2.499303 AAATCCCGGGCCAGGTTGAG 62.499 60.000 21.37 5.33 0.00 3.02
155 156 2.087857 AAAATCCCGGGCCAGGTTGA 62.088 55.000 21.37 12.15 0.00 3.18
156 157 1.191489 AAAAATCCCGGGCCAGGTTG 61.191 55.000 21.37 6.51 0.00 3.77
157 158 1.157513 AAAAATCCCGGGCCAGGTT 59.842 52.632 21.37 6.56 0.00 3.50
158 159 1.609210 CAAAAATCCCGGGCCAGGT 60.609 57.895 21.37 0.00 0.00 4.00
159 160 2.358372 CCAAAAATCCCGGGCCAGG 61.358 63.158 18.49 16.13 0.00 4.45
160 161 2.358372 CCCAAAAATCCCGGGCCAG 61.358 63.158 18.49 0.00 31.89 4.85
161 162 2.284258 CCCAAAAATCCCGGGCCA 60.284 61.111 18.49 0.00 31.89 5.36
164 165 2.358372 CCAGCCCAAAAATCCCGGG 61.358 63.158 16.85 16.85 43.42 5.73
165 166 0.687427 ATCCAGCCCAAAAATCCCGG 60.687 55.000 0.00 0.00 0.00 5.73
166 167 0.746659 GATCCAGCCCAAAAATCCCG 59.253 55.000 0.00 0.00 0.00 5.14
167 168 0.746659 CGATCCAGCCCAAAAATCCC 59.253 55.000 0.00 0.00 0.00 3.85
168 169 0.746659 CCGATCCAGCCCAAAAATCC 59.253 55.000 0.00 0.00 0.00 3.01
169 170 0.746659 CCCGATCCAGCCCAAAAATC 59.253 55.000 0.00 0.00 0.00 2.17
170 171 1.329913 GCCCGATCCAGCCCAAAAAT 61.330 55.000 0.00 0.00 0.00 1.82
171 172 1.981853 GCCCGATCCAGCCCAAAAA 60.982 57.895 0.00 0.00 0.00 1.94
172 173 2.362375 GCCCGATCCAGCCCAAAA 60.362 61.111 0.00 0.00 0.00 2.44
173 174 4.440829 GGCCCGATCCAGCCCAAA 62.441 66.667 9.12 0.00 43.76 3.28
206 207 2.338809 TGGGATAGACTTGGCCATAGG 58.661 52.381 6.09 2.35 0.00 2.57
207 208 4.137543 GTTTGGGATAGACTTGGCCATAG 58.862 47.826 6.09 9.93 0.00 2.23
208 209 3.117663 GGTTTGGGATAGACTTGGCCATA 60.118 47.826 6.09 0.00 0.00 2.74
209 210 2.358195 GGTTTGGGATAGACTTGGCCAT 60.358 50.000 6.09 0.00 0.00 4.40
210 211 1.005450 GGTTTGGGATAGACTTGGCCA 59.995 52.381 0.00 0.00 0.00 5.36
211 212 1.763968 GGTTTGGGATAGACTTGGCC 58.236 55.000 0.00 0.00 0.00 5.36
212 213 1.065709 TCGGTTTGGGATAGACTTGGC 60.066 52.381 0.00 0.00 0.00 4.52
213 214 3.007635 GTTCGGTTTGGGATAGACTTGG 58.992 50.000 0.00 0.00 0.00 3.61
214 215 2.671396 CGTTCGGTTTGGGATAGACTTG 59.329 50.000 0.00 0.00 0.00 3.16
215 216 2.301009 ACGTTCGGTTTGGGATAGACTT 59.699 45.455 0.00 0.00 0.00 3.01
216 217 1.897802 ACGTTCGGTTTGGGATAGACT 59.102 47.619 0.00 0.00 0.00 3.24
217 218 2.375173 ACGTTCGGTTTGGGATAGAC 57.625 50.000 0.00 0.00 0.00 2.59
218 219 2.354003 GGAACGTTCGGTTTGGGATAGA 60.354 50.000 21.34 0.00 39.50 1.98
219 220 2.004733 GGAACGTTCGGTTTGGGATAG 58.995 52.381 21.34 0.00 39.50 2.08
220 221 1.338960 GGGAACGTTCGGTTTGGGATA 60.339 52.381 21.34 0.00 39.50 2.59
221 222 0.607217 GGGAACGTTCGGTTTGGGAT 60.607 55.000 21.34 0.00 39.50 3.85
222 223 1.227913 GGGAACGTTCGGTTTGGGA 60.228 57.895 21.34 0.00 39.50 4.37
223 224 3.347168 GGGAACGTTCGGTTTGGG 58.653 61.111 21.34 0.00 39.50 4.12
235 236 1.947456 GGACCTTGATATTGCGGGAAC 59.053 52.381 0.00 0.00 0.00 3.62
236 237 1.562008 TGGACCTTGATATTGCGGGAA 59.438 47.619 0.00 0.00 0.00 3.97
237 238 1.208706 TGGACCTTGATATTGCGGGA 58.791 50.000 0.00 0.00 0.00 5.14
238 239 2.051334 TTGGACCTTGATATTGCGGG 57.949 50.000 0.00 0.00 0.00 6.13
239 240 4.654091 AAATTGGACCTTGATATTGCGG 57.346 40.909 0.00 0.00 0.00 5.69
240 241 7.257722 AGTAAAAATTGGACCTTGATATTGCG 58.742 34.615 0.00 0.00 0.00 4.85
247 248 9.581289 TCAGAAATAGTAAAAATTGGACCTTGA 57.419 29.630 0.00 0.00 0.00 3.02
250 251 8.971073 CCATCAGAAATAGTAAAAATTGGACCT 58.029 33.333 0.00 0.00 0.00 3.85
251 252 8.749354 ACCATCAGAAATAGTAAAAATTGGACC 58.251 33.333 0.00 0.00 0.00 4.46
252 253 9.788960 GACCATCAGAAATAGTAAAAATTGGAC 57.211 33.333 0.00 0.00 0.00 4.02
253 254 8.673711 CGACCATCAGAAATAGTAAAAATTGGA 58.326 33.333 0.00 0.00 0.00 3.53
254 255 8.458843 ACGACCATCAGAAATAGTAAAAATTGG 58.541 33.333 0.00 0.00 0.00 3.16
255 256 9.840427 AACGACCATCAGAAATAGTAAAAATTG 57.160 29.630 0.00 0.00 0.00 2.32
256 257 9.840427 CAACGACCATCAGAAATAGTAAAAATT 57.160 29.630 0.00 0.00 0.00 1.82
257 258 9.010029 ACAACGACCATCAGAAATAGTAAAAAT 57.990 29.630 0.00 0.00 0.00 1.82
258 259 8.286800 CACAACGACCATCAGAAATAGTAAAAA 58.713 33.333 0.00 0.00 0.00 1.94
259 260 7.442969 ACACAACGACCATCAGAAATAGTAAAA 59.557 33.333 0.00 0.00 0.00 1.52
260 261 6.932400 ACACAACGACCATCAGAAATAGTAAA 59.068 34.615 0.00 0.00 0.00 2.01
261 262 6.460781 ACACAACGACCATCAGAAATAGTAA 58.539 36.000 0.00 0.00 0.00 2.24
262 263 6.032956 ACACAACGACCATCAGAAATAGTA 57.967 37.500 0.00 0.00 0.00 1.82
263 264 4.894784 ACACAACGACCATCAGAAATAGT 58.105 39.130 0.00 0.00 0.00 2.12
264 265 5.444613 CGAACACAACGACCATCAGAAATAG 60.445 44.000 0.00 0.00 0.00 1.73
265 266 4.387559 CGAACACAACGACCATCAGAAATA 59.612 41.667 0.00 0.00 0.00 1.40
266 267 3.186409 CGAACACAACGACCATCAGAAAT 59.814 43.478 0.00 0.00 0.00 2.17
267 268 2.542178 CGAACACAACGACCATCAGAAA 59.458 45.455 0.00 0.00 0.00 2.52
268 269 2.131972 CGAACACAACGACCATCAGAA 58.868 47.619 0.00 0.00 0.00 3.02
269 270 1.338655 TCGAACACAACGACCATCAGA 59.661 47.619 0.00 0.00 34.85 3.27
270 271 1.721389 CTCGAACACAACGACCATCAG 59.279 52.381 0.00 0.00 35.88 2.90
271 272 1.338655 TCTCGAACACAACGACCATCA 59.661 47.619 0.00 0.00 35.88 3.07
272 273 1.986378 CTCTCGAACACAACGACCATC 59.014 52.381 0.00 0.00 35.88 3.51
273 274 1.611977 TCTCTCGAACACAACGACCAT 59.388 47.619 0.00 0.00 35.88 3.55
274 275 1.026584 TCTCTCGAACACAACGACCA 58.973 50.000 0.00 0.00 35.88 4.02
275 276 2.052157 CTTCTCTCGAACACAACGACC 58.948 52.381 0.00 0.00 35.88 4.79
276 277 1.452399 GCTTCTCTCGAACACAACGAC 59.548 52.381 0.00 0.00 35.88 4.34
277 278 1.337071 AGCTTCTCTCGAACACAACGA 59.663 47.619 0.00 0.00 38.11 3.85
278 279 1.772182 AGCTTCTCTCGAACACAACG 58.228 50.000 0.00 0.00 0.00 4.10
279 280 4.686554 ACATTAGCTTCTCTCGAACACAAC 59.313 41.667 0.00 0.00 0.00 3.32
280 281 4.686091 CACATTAGCTTCTCTCGAACACAA 59.314 41.667 0.00 0.00 0.00 3.33
281 282 4.237724 CACATTAGCTTCTCTCGAACACA 58.762 43.478 0.00 0.00 0.00 3.72
282 283 3.061429 GCACATTAGCTTCTCTCGAACAC 59.939 47.826 0.00 0.00 0.00 3.32
283 284 3.254060 GCACATTAGCTTCTCTCGAACA 58.746 45.455 0.00 0.00 0.00 3.18
284 285 2.280183 CGCACATTAGCTTCTCTCGAAC 59.720 50.000 0.00 0.00 0.00 3.95
285 286 2.163613 TCGCACATTAGCTTCTCTCGAA 59.836 45.455 0.00 0.00 0.00 3.71
286 287 1.743394 TCGCACATTAGCTTCTCTCGA 59.257 47.619 0.00 0.00 0.00 4.04
287 288 2.115595 CTCGCACATTAGCTTCTCTCG 58.884 52.381 0.00 0.00 0.00 4.04
288 289 2.468831 CCTCGCACATTAGCTTCTCTC 58.531 52.381 0.00 0.00 0.00 3.20
289 290 1.137872 CCCTCGCACATTAGCTTCTCT 59.862 52.381 0.00 0.00 0.00 3.10
290 291 1.576356 CCCTCGCACATTAGCTTCTC 58.424 55.000 0.00 0.00 0.00 2.87
291 292 0.179000 CCCCTCGCACATTAGCTTCT 59.821 55.000 0.00 0.00 0.00 2.85
292 293 0.178068 TCCCCTCGCACATTAGCTTC 59.822 55.000 0.00 0.00 0.00 3.86
293 294 0.179000 CTCCCCTCGCACATTAGCTT 59.821 55.000 0.00 0.00 0.00 3.74
294 295 0.687757 TCTCCCCTCGCACATTAGCT 60.688 55.000 0.00 0.00 0.00 3.32
295 296 0.178068 TTCTCCCCTCGCACATTAGC 59.822 55.000 0.00 0.00 0.00 3.09
296 297 2.555199 CTTTCTCCCCTCGCACATTAG 58.445 52.381 0.00 0.00 0.00 1.73
297 298 1.209504 CCTTTCTCCCCTCGCACATTA 59.790 52.381 0.00 0.00 0.00 1.90
298 299 0.035056 CCTTTCTCCCCTCGCACATT 60.035 55.000 0.00 0.00 0.00 2.71
299 300 1.604378 CCTTTCTCCCCTCGCACAT 59.396 57.895 0.00 0.00 0.00 3.21
300 301 2.592993 CCCTTTCTCCCCTCGCACA 61.593 63.158 0.00 0.00 0.00 4.57
301 302 2.269241 CCCTTTCTCCCCTCGCAC 59.731 66.667 0.00 0.00 0.00 5.34
302 303 3.009115 CCCCTTTCTCCCCTCGCA 61.009 66.667 0.00 0.00 0.00 5.10
303 304 3.798511 CCCCCTTTCTCCCCTCGC 61.799 72.222 0.00 0.00 0.00 5.03
304 305 3.798511 GCCCCCTTTCTCCCCTCG 61.799 72.222 0.00 0.00 0.00 4.63
305 306 2.216782 CTTGCCCCCTTTCTCCCCTC 62.217 65.000 0.00 0.00 0.00 4.30
306 307 2.121042 TTGCCCCCTTTCTCCCCT 60.121 61.111 0.00 0.00 0.00 4.79
307 308 2.360585 CTTGCCCCCTTTCTCCCC 59.639 66.667 0.00 0.00 0.00 4.81
308 309 2.238701 TCCTTGCCCCCTTTCTCCC 61.239 63.158 0.00 0.00 0.00 4.30
309 310 1.000771 GTCCTTGCCCCCTTTCTCC 60.001 63.158 0.00 0.00 0.00 3.71
310 311 1.377333 CGTCCTTGCCCCCTTTCTC 60.377 63.158 0.00 0.00 0.00 2.87
311 312 1.208165 ATCGTCCTTGCCCCCTTTCT 61.208 55.000 0.00 0.00 0.00 2.52
312 313 1.032114 CATCGTCCTTGCCCCCTTTC 61.032 60.000 0.00 0.00 0.00 2.62
313 314 1.000896 CATCGTCCTTGCCCCCTTT 60.001 57.895 0.00 0.00 0.00 3.11
314 315 2.677228 CATCGTCCTTGCCCCCTT 59.323 61.111 0.00 0.00 0.00 3.95
315 316 3.411517 CCATCGTCCTTGCCCCCT 61.412 66.667 0.00 0.00 0.00 4.79
318 319 4.467084 TCGCCATCGTCCTTGCCC 62.467 66.667 0.00 0.00 36.96 5.36
319 320 2.892425 CTCGCCATCGTCCTTGCC 60.892 66.667 0.00 0.00 36.96 4.52
320 321 2.892425 CCTCGCCATCGTCCTTGC 60.892 66.667 0.00 0.00 36.96 4.01
321 322 1.227089 CTCCTCGCCATCGTCCTTG 60.227 63.158 0.00 0.00 36.96 3.61
322 323 0.970937 TTCTCCTCGCCATCGTCCTT 60.971 55.000 0.00 0.00 36.96 3.36
323 324 1.379977 TTCTCCTCGCCATCGTCCT 60.380 57.895 0.00 0.00 36.96 3.85
324 325 1.066587 CTTCTCCTCGCCATCGTCC 59.933 63.158 0.00 0.00 36.96 4.79
325 326 1.066587 CCTTCTCCTCGCCATCGTC 59.933 63.158 0.00 0.00 36.96 4.20
326 327 2.427245 CCCTTCTCCTCGCCATCGT 61.427 63.158 0.00 0.00 36.96 3.73
327 328 2.419198 CCCTTCTCCTCGCCATCG 59.581 66.667 0.00 0.00 0.00 3.84
328 329 2.034048 GACCCCTTCTCCTCGCCATC 62.034 65.000 0.00 0.00 0.00 3.51
329 330 2.041265 ACCCCTTCTCCTCGCCAT 59.959 61.111 0.00 0.00 0.00 4.40
330 331 2.683933 GACCCCTTCTCCTCGCCA 60.684 66.667 0.00 0.00 0.00 5.69
331 332 3.839432 CGACCCCTTCTCCTCGCC 61.839 72.222 0.00 0.00 0.00 5.54
332 333 3.839432 CCGACCCCTTCTCCTCGC 61.839 72.222 0.00 0.00 0.00 5.03
333 334 3.148279 CCCGACCCCTTCTCCTCG 61.148 72.222 0.00 0.00 0.00 4.63
334 335 0.908180 TTTCCCGACCCCTTCTCCTC 60.908 60.000 0.00 0.00 0.00 3.71
335 336 0.910088 CTTTCCCGACCCCTTCTCCT 60.910 60.000 0.00 0.00 0.00 3.69
336 337 1.602771 CTTTCCCGACCCCTTCTCC 59.397 63.158 0.00 0.00 0.00 3.71
337 338 1.199425 ACCTTTCCCGACCCCTTCTC 61.199 60.000 0.00 0.00 0.00 2.87
338 339 1.151877 ACCTTTCCCGACCCCTTCT 60.152 57.895 0.00 0.00 0.00 2.85
339 340 1.002502 CACCTTTCCCGACCCCTTC 60.003 63.158 0.00 0.00 0.00 3.46
340 341 2.535331 CCACCTTTCCCGACCCCTT 61.535 63.158 0.00 0.00 0.00 3.95
341 342 2.933834 CCACCTTTCCCGACCCCT 60.934 66.667 0.00 0.00 0.00 4.79
342 343 4.735358 GCCACCTTTCCCGACCCC 62.735 72.222 0.00 0.00 0.00 4.95
343 344 3.282374 ATGCCACCTTTCCCGACCC 62.282 63.158 0.00 0.00 0.00 4.46
344 345 2.046285 CATGCCACCTTTCCCGACC 61.046 63.158 0.00 0.00 0.00 4.79
345 346 2.046285 CCATGCCACCTTTCCCGAC 61.046 63.158 0.00 0.00 0.00 4.79
346 347 2.196997 CTCCATGCCACCTTTCCCGA 62.197 60.000 0.00 0.00 0.00 5.14
347 348 1.750399 CTCCATGCCACCTTTCCCG 60.750 63.158 0.00 0.00 0.00 5.14
348 349 1.380380 CCTCCATGCCACCTTTCCC 60.380 63.158 0.00 0.00 0.00 3.97
349 350 0.394899 CTCCTCCATGCCACCTTTCC 60.395 60.000 0.00 0.00 0.00 3.13
350 351 0.620556 TCTCCTCCATGCCACCTTTC 59.379 55.000 0.00 0.00 0.00 2.62
351 352 1.075601 TTCTCCTCCATGCCACCTTT 58.924 50.000 0.00 0.00 0.00 3.11
352 353 1.075601 TTTCTCCTCCATGCCACCTT 58.924 50.000 0.00 0.00 0.00 3.50
353 354 1.064166 CATTTCTCCTCCATGCCACCT 60.064 52.381 0.00 0.00 0.00 4.00
354 355 1.064463 TCATTTCTCCTCCATGCCACC 60.064 52.381 0.00 0.00 0.00 4.61
355 356 2.425143 TCATTTCTCCTCCATGCCAC 57.575 50.000 0.00 0.00 0.00 5.01
356 357 2.357465 CCTTCATTTCTCCTCCATGCCA 60.357 50.000 0.00 0.00 0.00 4.92
357 358 2.305009 CCTTCATTTCTCCTCCATGCC 58.695 52.381 0.00 0.00 0.00 4.40
358 359 1.680207 GCCTTCATTTCTCCTCCATGC 59.320 52.381 0.00 0.00 0.00 4.06
359 360 2.950309 CTGCCTTCATTTCTCCTCCATG 59.050 50.000 0.00 0.00 0.00 3.66
360 361 2.686118 GCTGCCTTCATTTCTCCTCCAT 60.686 50.000 0.00 0.00 0.00 3.41
361 362 1.340405 GCTGCCTTCATTTCTCCTCCA 60.340 52.381 0.00 0.00 0.00 3.86
362 363 1.340405 TGCTGCCTTCATTTCTCCTCC 60.340 52.381 0.00 0.00 0.00 4.30
363 364 2.119801 TGCTGCCTTCATTTCTCCTC 57.880 50.000 0.00 0.00 0.00 3.71
364 365 2.444421 CTTGCTGCCTTCATTTCTCCT 58.556 47.619 0.00 0.00 0.00 3.69
365 366 1.475682 CCTTGCTGCCTTCATTTCTCC 59.524 52.381 0.00 0.00 0.00 3.71
366 367 1.475682 CCCTTGCTGCCTTCATTTCTC 59.524 52.381 0.00 0.00 0.00 2.87
367 368 1.076024 TCCCTTGCTGCCTTCATTTCT 59.924 47.619 0.00 0.00 0.00 2.52
368 369 1.549203 TCCCTTGCTGCCTTCATTTC 58.451 50.000 0.00 0.00 0.00 2.17
369 370 2.014010 TTCCCTTGCTGCCTTCATTT 57.986 45.000 0.00 0.00 0.00 2.32
370 371 1.897802 CTTTCCCTTGCTGCCTTCATT 59.102 47.619 0.00 0.00 0.00 2.57
371 372 1.553706 CTTTCCCTTGCTGCCTTCAT 58.446 50.000 0.00 0.00 0.00 2.57
372 373 0.540365 CCTTTCCCTTGCTGCCTTCA 60.540 55.000 0.00 0.00 0.00 3.02
373 374 1.253593 CCCTTTCCCTTGCTGCCTTC 61.254 60.000 0.00 0.00 0.00 3.46
374 375 1.228988 CCCTTTCCCTTGCTGCCTT 60.229 57.895 0.00 0.00 0.00 4.35
375 376 2.442413 CCCTTTCCCTTGCTGCCT 59.558 61.111 0.00 0.00 0.00 4.75
376 377 2.681421 CCCCTTTCCCTTGCTGCC 60.681 66.667 0.00 0.00 0.00 4.85
377 378 1.979155 GTCCCCTTTCCCTTGCTGC 60.979 63.158 0.00 0.00 0.00 5.25
378 379 1.675641 CGTCCCCTTTCCCTTGCTG 60.676 63.158 0.00 0.00 0.00 4.41
379 380 2.757077 CGTCCCCTTTCCCTTGCT 59.243 61.111 0.00 0.00 0.00 3.91
380 381 2.361230 CCGTCCCCTTTCCCTTGC 60.361 66.667 0.00 0.00 0.00 4.01
381 382 0.111639 TTTCCGTCCCCTTTCCCTTG 59.888 55.000 0.00 0.00 0.00 3.61
382 383 1.081481 ATTTCCGTCCCCTTTCCCTT 58.919 50.000 0.00 0.00 0.00 3.95
383 384 0.331616 CATTTCCGTCCCCTTTCCCT 59.668 55.000 0.00 0.00 0.00 4.20
384 385 0.330267 TCATTTCCGTCCCCTTTCCC 59.670 55.000 0.00 0.00 0.00 3.97
385 386 1.682087 CCTCATTTCCGTCCCCTTTCC 60.682 57.143 0.00 0.00 0.00 3.13
386 387 1.682087 CCCTCATTTCCGTCCCCTTTC 60.682 57.143 0.00 0.00 0.00 2.62
387 388 0.331616 CCCTCATTTCCGTCCCCTTT 59.668 55.000 0.00 0.00 0.00 3.11
388 389 0.845102 ACCCTCATTTCCGTCCCCTT 60.845 55.000 0.00 0.00 0.00 3.95
389 390 1.229853 ACCCTCATTTCCGTCCCCT 60.230 57.895 0.00 0.00 0.00 4.79
390 391 1.077716 CACCCTCATTTCCGTCCCC 60.078 63.158 0.00 0.00 0.00 4.81
391 392 1.749258 GCACCCTCATTTCCGTCCC 60.749 63.158 0.00 0.00 0.00 4.46
392 393 0.608035 TTGCACCCTCATTTCCGTCC 60.608 55.000 0.00 0.00 0.00 4.79
393 394 1.243902 TTTGCACCCTCATTTCCGTC 58.756 50.000 0.00 0.00 0.00 4.79
394 395 1.613437 CTTTTGCACCCTCATTTCCGT 59.387 47.619 0.00 0.00 0.00 4.69
395 396 1.613437 ACTTTTGCACCCTCATTTCCG 59.387 47.619 0.00 0.00 0.00 4.30
396 397 2.365293 ACACTTTTGCACCCTCATTTCC 59.635 45.455 0.00 0.00 0.00 3.13
397 398 3.068024 TCACACTTTTGCACCCTCATTTC 59.932 43.478 0.00 0.00 0.00 2.17
398 399 3.030291 TCACACTTTTGCACCCTCATTT 58.970 40.909 0.00 0.00 0.00 2.32
399 400 2.665165 TCACACTTTTGCACCCTCATT 58.335 42.857 0.00 0.00 0.00 2.57
400 401 2.363306 TCACACTTTTGCACCCTCAT 57.637 45.000 0.00 0.00 0.00 2.90
401 402 1.955778 CATCACACTTTTGCACCCTCA 59.044 47.619 0.00 0.00 0.00 3.86
402 403 1.270550 CCATCACACTTTTGCACCCTC 59.729 52.381 0.00 0.00 0.00 4.30
403 404 1.133513 TCCATCACACTTTTGCACCCT 60.134 47.619 0.00 0.00 0.00 4.34
404 405 1.270550 CTCCATCACACTTTTGCACCC 59.729 52.381 0.00 0.00 0.00 4.61
405 406 1.956477 ACTCCATCACACTTTTGCACC 59.044 47.619 0.00 0.00 0.00 5.01
406 407 3.715628 AACTCCATCACACTTTTGCAC 57.284 42.857 0.00 0.00 0.00 4.57
407 408 3.068024 GGAAACTCCATCACACTTTTGCA 59.932 43.478 0.00 0.00 36.28 4.08
408 409 3.552890 GGGAAACTCCATCACACTTTTGC 60.553 47.826 0.00 0.00 38.64 3.68
409 410 3.304659 CGGGAAACTCCATCACACTTTTG 60.305 47.826 0.00 0.00 38.64 2.44
410 411 2.884639 CGGGAAACTCCATCACACTTTT 59.115 45.455 0.00 0.00 38.64 2.27
411 412 2.504367 CGGGAAACTCCATCACACTTT 58.496 47.619 0.00 0.00 38.64 2.66
412 413 1.882352 GCGGGAAACTCCATCACACTT 60.882 52.381 0.00 0.00 38.64 3.16
413 414 0.321653 GCGGGAAACTCCATCACACT 60.322 55.000 0.00 0.00 38.64 3.55
414 415 0.605319 TGCGGGAAACTCCATCACAC 60.605 55.000 0.00 0.00 38.64 3.82
415 416 0.109532 TTGCGGGAAACTCCATCACA 59.890 50.000 0.00 0.00 38.64 3.58
416 417 1.243902 TTTGCGGGAAACTCCATCAC 58.756 50.000 0.00 0.00 38.64 3.06
417 418 1.988293 TTTTGCGGGAAACTCCATCA 58.012 45.000 0.00 0.00 38.64 3.07
438 439 9.965824 CCTTTTTATGAAAACTACATCACACTT 57.034 29.630 0.00 0.00 31.72 3.16
439 440 9.131791 ACCTTTTTATGAAAACTACATCACACT 57.868 29.630 0.00 0.00 31.72 3.55
440 441 9.394477 GACCTTTTTATGAAAACTACATCACAC 57.606 33.333 0.00 0.00 31.72 3.82
441 442 8.573035 GGACCTTTTTATGAAAACTACATCACA 58.427 33.333 0.00 0.00 31.72 3.58
442 443 7.749126 CGGACCTTTTTATGAAAACTACATCAC 59.251 37.037 0.00 0.00 31.72 3.06
443 444 7.094549 CCGGACCTTTTTATGAAAACTACATCA 60.095 37.037 0.00 0.00 31.72 3.07
444 445 7.094506 ACCGGACCTTTTTATGAAAACTACATC 60.095 37.037 9.46 0.00 31.72 3.06
445 446 6.717997 ACCGGACCTTTTTATGAAAACTACAT 59.282 34.615 9.46 0.00 31.72 2.29
446 447 6.063404 ACCGGACCTTTTTATGAAAACTACA 58.937 36.000 9.46 0.00 31.72 2.74
447 448 6.564709 ACCGGACCTTTTTATGAAAACTAC 57.435 37.500 9.46 0.00 31.72 2.73
448 449 5.409214 CGACCGGACCTTTTTATGAAAACTA 59.591 40.000 9.46 0.00 31.72 2.24
449 450 4.214758 CGACCGGACCTTTTTATGAAAACT 59.785 41.667 9.46 0.00 31.72 2.66
450 451 4.469552 CGACCGGACCTTTTTATGAAAAC 58.530 43.478 9.46 0.00 31.72 2.43
451 452 3.058085 GCGACCGGACCTTTTTATGAAAA 60.058 43.478 9.46 0.00 33.86 2.29
452 453 2.485038 GCGACCGGACCTTTTTATGAAA 59.515 45.455 9.46 0.00 0.00 2.69
453 454 2.078392 GCGACCGGACCTTTTTATGAA 58.922 47.619 9.46 0.00 0.00 2.57
454 455 1.729284 GCGACCGGACCTTTTTATGA 58.271 50.000 9.46 0.00 0.00 2.15
455 456 0.372334 CGCGACCGGACCTTTTTATG 59.628 55.000 9.46 0.00 0.00 1.90
456 457 0.037046 ACGCGACCGGACCTTTTTAT 60.037 50.000 15.93 0.00 39.22 1.40
457 458 0.667184 GACGCGACCGGACCTTTTTA 60.667 55.000 15.93 0.00 39.22 1.52
458 459 1.957695 GACGCGACCGGACCTTTTT 60.958 57.895 15.93 0.00 39.22 1.94
459 460 2.356673 GACGCGACCGGACCTTTT 60.357 61.111 15.93 0.00 39.22 2.27
460 461 3.569049 CTGACGCGACCGGACCTTT 62.569 63.158 15.93 0.00 39.22 3.11
461 462 4.052229 CTGACGCGACCGGACCTT 62.052 66.667 15.93 0.00 39.22 3.50
463 464 2.275547 ATAACTGACGCGACCGGACC 62.276 60.000 15.93 0.00 39.22 4.46
464 465 0.457337 AATAACTGACGCGACCGGAC 60.457 55.000 15.93 0.00 39.22 4.79
465 466 0.244450 AAATAACTGACGCGACCGGA 59.756 50.000 15.93 0.00 39.22 5.14
466 467 0.643820 GAAATAACTGACGCGACCGG 59.356 55.000 15.93 11.98 39.22 5.28
467 468 0.293723 CGAAATAACTGACGCGACCG 59.706 55.000 15.93 5.60 41.14 4.79
468 469 0.643820 CCGAAATAACTGACGCGACC 59.356 55.000 15.93 4.44 0.00 4.79
469 470 1.343506 ACCGAAATAACTGACGCGAC 58.656 50.000 15.93 7.62 0.00 5.19
470 471 2.518949 GTACCGAAATAACTGACGCGA 58.481 47.619 15.93 0.00 0.00 5.87
471 472 1.251002 CGTACCGAAATAACTGACGCG 59.749 52.381 3.53 3.53 0.00 6.01
472 473 1.585214 CCGTACCGAAATAACTGACGC 59.415 52.381 0.00 0.00 0.00 5.19
473 474 3.103738 CTCCGTACCGAAATAACTGACG 58.896 50.000 0.00 0.00 0.00 4.35
474 475 3.442100 CCTCCGTACCGAAATAACTGAC 58.558 50.000 0.00 0.00 0.00 3.51
475 476 2.428171 CCCTCCGTACCGAAATAACTGA 59.572 50.000 0.00 0.00 0.00 3.41
476 477 2.428171 TCCCTCCGTACCGAAATAACTG 59.572 50.000 0.00 0.00 0.00 3.16
477 478 2.692041 CTCCCTCCGTACCGAAATAACT 59.308 50.000 0.00 0.00 0.00 2.24
478 479 2.428530 ACTCCCTCCGTACCGAAATAAC 59.571 50.000 0.00 0.00 0.00 1.89
479 480 2.738743 ACTCCCTCCGTACCGAAATAA 58.261 47.619 0.00 0.00 0.00 1.40
480 481 2.442236 ACTCCCTCCGTACCGAAATA 57.558 50.000 0.00 0.00 0.00 1.40
481 482 2.305009 CTACTCCCTCCGTACCGAAAT 58.695 52.381 0.00 0.00 0.00 2.17
482 483 1.755179 CTACTCCCTCCGTACCGAAA 58.245 55.000 0.00 0.00 0.00 3.46
483 484 0.749454 GCTACTCCCTCCGTACCGAA 60.749 60.000 0.00 0.00 0.00 4.30
484 485 1.153086 GCTACTCCCTCCGTACCGA 60.153 63.158 0.00 0.00 0.00 4.69
485 486 0.822532 ATGCTACTCCCTCCGTACCG 60.823 60.000 0.00 0.00 0.00 4.02
486 487 1.411041 AATGCTACTCCCTCCGTACC 58.589 55.000 0.00 0.00 0.00 3.34
487 488 2.694109 AGAAATGCTACTCCCTCCGTAC 59.306 50.000 0.00 0.00 0.00 3.67
488 489 2.957006 GAGAAATGCTACTCCCTCCGTA 59.043 50.000 0.00 0.00 0.00 4.02
489 490 1.757699 GAGAAATGCTACTCCCTCCGT 59.242 52.381 0.00 0.00 0.00 4.69
490 491 2.035632 AGAGAAATGCTACTCCCTCCG 58.964 52.381 0.00 0.00 34.13 4.63
491 492 2.484594 GCAGAGAAATGCTACTCCCTCC 60.485 54.545 0.00 0.00 43.07 4.30
492 493 2.484594 GGCAGAGAAATGCTACTCCCTC 60.485 54.545 0.00 0.00 45.75 4.30
493 494 1.488393 GGCAGAGAAATGCTACTCCCT 59.512 52.381 0.00 0.00 45.75 4.20
494 495 1.210478 TGGCAGAGAAATGCTACTCCC 59.790 52.381 0.00 0.00 45.75 4.30
495 496 2.169352 TCTGGCAGAGAAATGCTACTCC 59.831 50.000 14.43 0.00 45.75 3.85
496 497 3.194062 GTCTGGCAGAGAAATGCTACTC 58.806 50.000 19.38 0.00 45.75 2.59
497 498 2.417924 CGTCTGGCAGAGAAATGCTACT 60.418 50.000 19.38 0.00 45.75 2.57
498 499 1.929836 CGTCTGGCAGAGAAATGCTAC 59.070 52.381 19.38 2.05 45.75 3.58
499 500 1.824852 TCGTCTGGCAGAGAAATGCTA 59.175 47.619 19.38 0.00 45.75 3.49
500 501 0.610174 TCGTCTGGCAGAGAAATGCT 59.390 50.000 19.38 0.00 45.75 3.79
501 502 1.396301 CTTCGTCTGGCAGAGAAATGC 59.604 52.381 19.38 3.79 45.74 3.56
502 503 2.928757 CTCTTCGTCTGGCAGAGAAATG 59.071 50.000 19.38 12.06 36.88 2.32
503 504 2.828520 TCTCTTCGTCTGGCAGAGAAAT 59.171 45.455 19.38 0.00 40.10 2.17
504 505 2.239400 TCTCTTCGTCTGGCAGAGAAA 58.761 47.619 19.38 13.79 40.10 2.52
505 506 1.911057 TCTCTTCGTCTGGCAGAGAA 58.089 50.000 19.38 20.15 40.10 2.87
506 507 1.815613 CTTCTCTTCGTCTGGCAGAGA 59.184 52.381 19.38 14.36 41.09 3.10
518 519 9.464714 TGTTATTGCGAGTATAATCTTCTCTTC 57.535 33.333 0.00 0.00 0.00 2.87
549 551 7.154656 GCCATTTATCCTTCTCTTGTGTTTTT 58.845 34.615 0.00 0.00 0.00 1.94
554 556 3.941483 ACGCCATTTATCCTTCTCTTGTG 59.059 43.478 0.00 0.00 0.00 3.33
556 558 3.941483 ACACGCCATTTATCCTTCTCTTG 59.059 43.478 0.00 0.00 0.00 3.02
578 584 6.647334 TTTGCAATTTATCAACTCCAGACA 57.353 33.333 0.00 0.00 0.00 3.41
647 653 3.286751 GCCGTGGCTGCTGTCAAA 61.287 61.111 2.98 0.00 38.26 2.69
676 682 5.301555 TGATGACAAATTGTACTGTTCGGA 58.698 37.500 0.00 0.00 0.00 4.55
738 744 0.179086 TGCTGAACGTGAACTGCTGA 60.179 50.000 15.76 0.83 33.38 4.26
844 850 4.286813 AGTAGATTCTTGGATGGAGGGA 57.713 45.455 0.00 0.00 0.00 4.20
845 851 5.379706 AAAGTAGATTCTTGGATGGAGGG 57.620 43.478 0.00 0.00 0.00 4.30
846 852 6.292150 GGTAAAGTAGATTCTTGGATGGAGG 58.708 44.000 0.00 0.00 0.00 4.30
847 853 6.292150 GGGTAAAGTAGATTCTTGGATGGAG 58.708 44.000 0.00 0.00 0.00 3.86
848 854 5.163343 CGGGTAAAGTAGATTCTTGGATGGA 60.163 44.000 0.00 0.00 0.00 3.41
849 855 5.057149 CGGGTAAAGTAGATTCTTGGATGG 58.943 45.833 0.00 0.00 0.00 3.51
850 856 5.914033 TCGGGTAAAGTAGATTCTTGGATG 58.086 41.667 0.00 0.00 0.00 3.51
851 857 5.897824 TCTCGGGTAAAGTAGATTCTTGGAT 59.102 40.000 0.00 0.00 0.00 3.41
852 858 5.126707 GTCTCGGGTAAAGTAGATTCTTGGA 59.873 44.000 0.00 0.00 0.00 3.53
977 983 1.425066 TGGTGTTGGAAGAAGCCTGAT 59.575 47.619 0.00 0.00 0.00 2.90
981 987 1.398692 TTGTGGTGTTGGAAGAAGCC 58.601 50.000 0.00 0.00 0.00 4.35
1040 1046 3.728292 GAGAATGGGGGCAGGCTGG 62.728 68.421 17.64 0.00 0.00 4.85
1299 1305 0.034756 CCTGGTTCACGATGTCCACA 59.965 55.000 0.00 0.00 0.00 4.17
1324 1330 4.006357 GTTGTCCGGCCCGTACCA 62.006 66.667 0.85 0.00 0.00 3.25
1428 1434 0.183492 TGCAGACCAGGAAAGCAAGT 59.817 50.000 0.00 0.00 31.42 3.16
1908 3326 4.155826 TGGTTAATGCGACAAAGAGAATGG 59.844 41.667 0.00 0.00 0.00 3.16
1932 3350 1.681076 GGTCGGGGGTGCTTAGAAA 59.319 57.895 0.00 0.00 0.00 2.52
2051 3469 6.389906 GCTGTAGGCATCAACAAAATAGTTT 58.610 36.000 0.00 0.00 41.35 2.66
2090 3508 9.248291 GATCAACAAGCATTTGAACTTCTAAAA 57.752 29.630 0.00 0.00 36.57 1.52
2134 3552 9.868277 TCAGTGTTTTTGATTGAGTAAACATTT 57.132 25.926 0.00 0.00 41.06 2.32
2252 3670 2.693069 CACCTGATATCGAGGAATGCC 58.307 52.381 21.15 0.00 34.37 4.40
2447 3865 4.724262 GAGCCCTCGAAGCCTTTT 57.276 55.556 3.59 0.00 0.00 2.27
3411 4842 3.126171 TGTTGCATTATAGTTCCACGTGC 59.874 43.478 10.91 0.00 0.00 5.34
3449 4880 8.129496 TCTTGAGATAAAGTGGTACATACACA 57.871 34.615 0.00 0.00 44.52 3.72
3471 4902 5.296151 TGGTTGAACTCAAGTCATCTCTT 57.704 39.130 0.00 0.00 36.39 2.85
3472 4903 4.963318 TGGTTGAACTCAAGTCATCTCT 57.037 40.909 0.00 0.00 36.39 3.10
3505 4936 0.249953 TTGCTTTGCTGGCCATGTTG 60.250 50.000 5.51 0.00 0.00 3.33
3513 4944 3.648339 TTAAAGAGCTTGCTTTGCTGG 57.352 42.857 9.97 0.00 41.30 4.85
3691 5250 8.954834 ACATATATGGAATTTGATGGGCTTAA 57.045 30.769 16.96 0.00 0.00 1.85
3770 5329 7.279615 TGATTACTCCAAAGTTGAAGTTCTCA 58.720 34.615 4.17 0.00 36.92 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.