Multiple sequence alignment - TraesCS3A01G098800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G098800 chr3A 100.000 2513 0 0 1 2513 63839037 63836525 0.000000e+00 4641.0
1 TraesCS3A01G098800 chr3A 79.845 129 20 6 16 139 670677502 670677375 3.440000e-14 89.8
2 TraesCS3A01G098800 chr3A 79.381 97 12 6 50 145 514104779 514104868 7.510000e-06 62.1
3 TraesCS3A01G098800 chr3B 93.460 1636 57 23 141 1752 81334969 81333360 0.000000e+00 2383.0
4 TraesCS3A01G098800 chr3B 86.486 222 21 6 1895 2110 773866082 773865864 4.180000e-58 235.0
5 TraesCS3A01G098800 chr3B 94.595 74 3 1 1737 1810 81333344 81333272 2.040000e-21 113.0
6 TraesCS3A01G098800 chr3B 100.000 32 0 0 46 77 809152178 809152209 2.700000e-05 60.2
7 TraesCS3A01G098800 chr3B 100.000 30 0 0 2081 2110 795555731 795555702 3.490000e-04 56.5
8 TraesCS3A01G098800 chr3D 95.910 1198 30 10 574 1767 50881036 50879854 0.000000e+00 1923.0
9 TraesCS3A01G098800 chr3D 91.150 565 38 9 17 573 50881633 50881073 0.000000e+00 756.0
10 TraesCS3A01G098800 chr2D 84.106 302 25 8 1809 2110 590723679 590723957 1.150000e-68 270.0
11 TraesCS3A01G098800 chr4A 88.889 207 20 3 1814 2020 669685752 669685549 4.150000e-63 252.0
12 TraesCS3A01G098800 chr4A 82.857 140 20 4 2 139 132681919 132681782 3.390000e-24 122.0
13 TraesCS3A01G098800 chr4A 92.593 54 4 0 2056 2109 669685547 669685494 7.450000e-11 78.7
14 TraesCS3A01G098800 chr6B 84.800 125 16 3 1803 1925 21084223 21084346 3.390000e-24 122.0
15 TraesCS3A01G098800 chr6B 85.217 115 17 0 1808 1922 664288944 664288830 4.390000e-23 119.0
16 TraesCS3A01G098800 chr6B 81.443 97 18 0 1830 1926 515299186 515299282 2.070000e-11 80.5
17 TraesCS3A01G098800 chr2B 84.746 118 16 2 1809 1925 93399037 93398921 1.580000e-22 117.0
18 TraesCS3A01G098800 chr4D 84.615 117 15 3 1812 1926 97964716 97964831 2.040000e-21 113.0
19 TraesCS3A01G098800 chr7B 84.071 113 16 2 16 126 124082393 124082281 9.510000e-20 108.0
20 TraesCS3A01G098800 chrUn 81.579 114 16 5 15 126 124695211 124695101 3.440000e-14 89.8
21 TraesCS3A01G098800 chr1D 79.832 119 21 3 16 132 453451205 453451322 1.600000e-12 84.2
22 TraesCS3A01G098800 chr7A 79.592 98 15 4 47 140 54789181 54789085 5.800000e-07 65.8
23 TraesCS3A01G098800 chr7D 91.304 46 3 1 1853 1898 587556254 587556298 7.510000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G098800 chr3A 63836525 63839037 2512 True 4641.0 4641 100.0000 1 2513 1 chr3A.!!$R1 2512
1 TraesCS3A01G098800 chr3B 81333272 81334969 1697 True 1248.0 2383 94.0275 141 1810 2 chr3B.!!$R3 1669
2 TraesCS3A01G098800 chr3D 50879854 50881633 1779 True 1339.5 1923 93.5300 17 1767 2 chr3D.!!$R1 1750

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
96 98 0.663269 TATGATCGTGCGCGTCATCC 60.663 55.0 28.27 13.66 38.62 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1961 2059 0.107017 AATGATCCCGGCTCAACCTG 60.107 55.0 8.78 0.0 35.61 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 6.045955 TGCAACCTTCTTTTCGCTTTATTTT 58.954 32.000 0.00 0.00 0.00 1.82
34 35 6.613536 GCAACCTTCTTTTCGCTTTATTTTCG 60.614 38.462 0.00 0.00 0.00 3.46
36 37 5.009310 ACCTTCTTTTCGCTTTATTTTCGGT 59.991 36.000 0.00 0.00 0.00 4.69
37 38 5.567915 CCTTCTTTTCGCTTTATTTTCGGTC 59.432 40.000 0.00 0.00 0.00 4.79
38 39 5.676532 TCTTTTCGCTTTATTTTCGGTCA 57.323 34.783 0.00 0.00 0.00 4.02
39 40 6.062434 TCTTTTCGCTTTATTTTCGGTCAA 57.938 33.333 0.00 0.00 0.00 3.18
40 41 6.674066 TCTTTTCGCTTTATTTTCGGTCAAT 58.326 32.000 0.00 0.00 0.00 2.57
53 55 6.774354 TTTCGGTCAATATTATTCGGCTAC 57.226 37.500 0.00 0.00 0.00 3.58
56 58 4.625742 CGGTCAATATTATTCGGCTACTGG 59.374 45.833 0.00 0.00 0.00 4.00
90 92 7.376530 TCTTAATAATATATGATCGTGCGCG 57.623 36.000 14.79 14.79 39.92 6.86
96 98 0.663269 TATGATCGTGCGCGTCATCC 60.663 55.000 28.27 13.66 38.62 3.51
108 110 2.137129 CGTCATCCTGATGCAGAGAG 57.863 55.000 2.18 0.00 38.65 3.20
125 127 0.837940 GAGCGGGGTTATCCTCCTTT 59.162 55.000 0.00 0.00 35.33 3.11
126 128 1.212195 GAGCGGGGTTATCCTCCTTTT 59.788 52.381 0.00 0.00 35.33 2.27
127 129 1.639108 AGCGGGGTTATCCTCCTTTTT 59.361 47.619 0.00 0.00 35.33 1.94
134 138 6.605995 CGGGGTTATCCTCCTTTTTAGAAAAT 59.394 38.462 0.00 0.00 35.33 1.82
135 139 7.776500 CGGGGTTATCCTCCTTTTTAGAAAATA 59.224 37.037 0.00 0.00 35.33 1.40
185 189 3.611766 ACTCCTATGGCTGTTGTACAC 57.388 47.619 0.00 0.00 0.00 2.90
243 247 0.670239 CACCAAAAGCATTTCCCGCC 60.670 55.000 0.00 0.00 37.28 6.13
299 303 2.327244 CGGACTCGGTAGCTACGC 59.673 66.667 17.48 9.65 0.00 4.42
393 397 2.917804 TGTTCCCAACAAAACCCCC 58.082 52.632 0.00 0.00 38.72 5.40
442 446 1.367599 GCAGGCAGCACTCATGAGAC 61.368 60.000 29.27 19.18 44.79 3.36
493 497 4.208948 CATGGCTGTACGTGCGCG 62.209 66.667 19.78 19.78 44.93 6.86
516 520 2.229543 CAGTGTGCTGTGCCATTATTGT 59.770 45.455 0.00 0.00 37.92 2.71
596 641 3.866651 GGCAACTGATTTCTAGCTGAGA 58.133 45.455 0.00 0.00 0.00 3.27
597 642 4.256920 GGCAACTGATTTCTAGCTGAGAA 58.743 43.478 0.00 0.00 42.69 2.87
860 915 2.352388 CCTCCTCGTCGATCCTATCTC 58.648 57.143 0.00 0.00 0.00 2.75
915 970 4.155826 CGCCACCATAGAAGAGAGAGATAG 59.844 50.000 0.00 0.00 0.00 2.08
916 971 5.076873 GCCACCATAGAAGAGAGAGATAGT 58.923 45.833 0.00 0.00 0.00 2.12
917 972 6.242396 GCCACCATAGAAGAGAGAGATAGTA 58.758 44.000 0.00 0.00 0.00 1.82
920 975 7.556275 CCACCATAGAAGAGAGAGATAGTATCC 59.444 44.444 6.53 0.00 0.00 2.59
1290 1347 0.319555 CCGACGCCAAGAAGAAGACA 60.320 55.000 0.00 0.00 0.00 3.41
1358 1418 3.576356 GCACCATCGCCACCATCG 61.576 66.667 0.00 0.00 0.00 3.84
1359 1419 2.896854 CACCATCGCCACCATCGG 60.897 66.667 0.00 0.00 0.00 4.18
1519 1585 2.835431 AGGACCCCTGATCGAGCG 60.835 66.667 0.00 0.00 29.57 5.03
1622 1688 8.236586 TCTTGTTGCATGTCTCACATTTATTAC 58.763 33.333 0.00 0.00 36.53 1.89
1675 1742 0.665068 ATTCAAGCGTCGCGTGTGTA 60.665 50.000 27.96 17.03 38.97 2.90
1709 1776 2.487762 CTGTGACCGTGGCATATGTTTT 59.512 45.455 4.29 0.00 0.00 2.43
1711 1778 3.057876 TGTGACCGTGGCATATGTTTTTC 60.058 43.478 4.29 0.00 0.00 2.29
1740 1838 3.347958 TTGAACTTCGTGATTTGTGCC 57.652 42.857 0.00 0.00 0.00 5.01
1768 1866 8.731605 TGTGACACTTCTGTTGTAAATACAAAA 58.268 29.630 7.20 2.09 46.54 2.44
1795 1893 5.003804 GCTGTCAATTTTGGTCTCTCCTAA 58.996 41.667 0.00 0.00 37.07 2.69
1804 1902 2.304761 TGGTCTCTCCTAATGCCGTTTT 59.695 45.455 0.00 0.00 37.07 2.43
1833 1931 4.933330 GGAAAAGTCCAAAACAGACCTTC 58.067 43.478 0.00 0.00 44.26 3.46
1834 1932 4.401202 GGAAAAGTCCAAAACAGACCTTCA 59.599 41.667 0.00 0.00 44.26 3.02
1835 1933 5.105513 GGAAAAGTCCAAAACAGACCTTCAA 60.106 40.000 0.00 0.00 44.26 2.69
1836 1934 4.983671 AAGTCCAAAACAGACCTTCAAC 57.016 40.909 0.00 0.00 34.67 3.18
1837 1935 4.236527 AGTCCAAAACAGACCTTCAACT 57.763 40.909 0.00 0.00 34.67 3.16
1838 1936 4.600062 AGTCCAAAACAGACCTTCAACTT 58.400 39.130 0.00 0.00 34.67 2.66
1839 1937 4.399303 AGTCCAAAACAGACCTTCAACTTG 59.601 41.667 0.00 0.00 34.67 3.16
1840 1938 4.157840 GTCCAAAACAGACCTTCAACTTGT 59.842 41.667 0.00 0.00 0.00 3.16
1841 1939 5.355910 GTCCAAAACAGACCTTCAACTTGTA 59.644 40.000 0.00 0.00 0.00 2.41
1842 1940 5.588648 TCCAAAACAGACCTTCAACTTGTAG 59.411 40.000 0.00 0.00 0.00 2.74
1843 1941 5.588648 CCAAAACAGACCTTCAACTTGTAGA 59.411 40.000 0.00 0.00 0.00 2.59
1844 1942 6.263168 CCAAAACAGACCTTCAACTTGTAGAT 59.737 38.462 0.00 0.00 0.00 1.98
1845 1943 6.867662 AAACAGACCTTCAACTTGTAGATG 57.132 37.500 0.00 0.00 0.00 2.90
1846 1944 5.808366 ACAGACCTTCAACTTGTAGATGA 57.192 39.130 0.00 0.00 0.00 2.92
1847 1945 6.174720 ACAGACCTTCAACTTGTAGATGAA 57.825 37.500 0.00 0.00 35.12 2.57
1848 1946 6.591935 ACAGACCTTCAACTTGTAGATGAAA 58.408 36.000 0.00 0.00 36.73 2.69
1849 1947 6.708054 ACAGACCTTCAACTTGTAGATGAAAG 59.292 38.462 0.00 0.00 36.73 2.62
1850 1948 5.703130 AGACCTTCAACTTGTAGATGAAAGC 59.297 40.000 0.00 0.00 36.73 3.51
1851 1949 5.625150 ACCTTCAACTTGTAGATGAAAGCT 58.375 37.500 0.00 0.00 36.73 3.74
1852 1950 6.769512 ACCTTCAACTTGTAGATGAAAGCTA 58.230 36.000 0.00 0.00 36.73 3.32
1853 1951 7.224297 ACCTTCAACTTGTAGATGAAAGCTAA 58.776 34.615 0.00 0.00 36.08 3.09
1854 1952 7.719633 ACCTTCAACTTGTAGATGAAAGCTAAA 59.280 33.333 0.00 0.00 36.08 1.85
1855 1953 8.734386 CCTTCAACTTGTAGATGAAAGCTAAAT 58.266 33.333 0.00 0.00 36.08 1.40
1856 1954 9.766277 CTTCAACTTGTAGATGAAAGCTAAATC 57.234 33.333 0.00 0.00 36.08 2.17
1857 1955 8.846943 TCAACTTGTAGATGAAAGCTAAATCA 57.153 30.769 0.00 0.00 36.08 2.57
1858 1956 9.283768 TCAACTTGTAGATGAAAGCTAAATCAA 57.716 29.630 0.00 0.00 36.08 2.57
1859 1957 9.897744 CAACTTGTAGATGAAAGCTAAATCAAA 57.102 29.630 0.00 0.00 36.08 2.69
1860 1958 9.899226 AACTTGTAGATGAAAGCTAAATCAAAC 57.101 29.630 0.00 0.00 36.08 2.93
1861 1959 8.515414 ACTTGTAGATGAAAGCTAAATCAAACC 58.485 33.333 0.00 0.00 36.08 3.27
1862 1960 8.635765 TTGTAGATGAAAGCTAAATCAAACCT 57.364 30.769 0.00 0.00 36.08 3.50
1863 1961 8.635765 TGTAGATGAAAGCTAAATCAAACCTT 57.364 30.769 0.00 0.00 36.08 3.50
1864 1962 8.514594 TGTAGATGAAAGCTAAATCAAACCTTG 58.485 33.333 0.00 0.00 36.08 3.61
1865 1963 7.765695 AGATGAAAGCTAAATCAAACCTTGA 57.234 32.000 0.00 0.00 45.01 3.02
1866 1964 8.181904 AGATGAAAGCTAAATCAAACCTTGAA 57.818 30.769 0.00 0.00 43.95 2.69
1867 1965 8.084684 AGATGAAAGCTAAATCAAACCTTGAAC 58.915 33.333 0.00 0.00 43.95 3.18
1868 1966 7.346751 TGAAAGCTAAATCAAACCTTGAACT 57.653 32.000 0.00 0.00 43.95 3.01
1869 1967 7.781056 TGAAAGCTAAATCAAACCTTGAACTT 58.219 30.769 0.00 0.00 43.95 2.66
1870 1968 7.920682 TGAAAGCTAAATCAAACCTTGAACTTC 59.079 33.333 0.00 0.00 43.95 3.01
1871 1969 6.959639 AGCTAAATCAAACCTTGAACTTCA 57.040 33.333 0.00 0.00 43.95 3.02
1872 1970 7.346751 AGCTAAATCAAACCTTGAACTTCAA 57.653 32.000 4.16 4.16 43.95 2.69
1873 1971 7.781056 AGCTAAATCAAACCTTGAACTTCAAA 58.219 30.769 5.72 0.00 43.95 2.69
1874 1972 8.424133 AGCTAAATCAAACCTTGAACTTCAAAT 58.576 29.630 5.72 0.00 43.95 2.32
1875 1973 8.703336 GCTAAATCAAACCTTGAACTTCAAATC 58.297 33.333 5.72 0.00 43.95 2.17
1876 1974 9.196552 CTAAATCAAACCTTGAACTTCAAATCC 57.803 33.333 5.72 0.00 43.95 3.01
1877 1975 5.529581 TCAAACCTTGAACTTCAAATCCC 57.470 39.130 5.72 0.00 35.73 3.85
1878 1976 5.208121 TCAAACCTTGAACTTCAAATCCCT 58.792 37.500 5.72 0.00 35.73 4.20
1879 1977 5.068987 TCAAACCTTGAACTTCAAATCCCTG 59.931 40.000 5.72 1.29 35.73 4.45
1880 1978 4.453480 ACCTTGAACTTCAAATCCCTGA 57.547 40.909 5.72 0.00 35.73 3.86
1881 1979 4.803452 ACCTTGAACTTCAAATCCCTGAA 58.197 39.130 5.72 0.00 35.73 3.02
1882 1980 5.208121 ACCTTGAACTTCAAATCCCTGAAA 58.792 37.500 5.72 0.00 35.73 2.69
1883 1981 5.840693 ACCTTGAACTTCAAATCCCTGAAAT 59.159 36.000 5.72 0.00 35.73 2.17
1884 1982 6.327365 ACCTTGAACTTCAAATCCCTGAAATT 59.673 34.615 5.72 0.00 35.73 1.82
1885 1983 6.647895 CCTTGAACTTCAAATCCCTGAAATTG 59.352 38.462 5.72 0.00 35.73 2.32
1886 1984 6.100404 TGAACTTCAAATCCCTGAAATTGG 57.900 37.500 0.00 0.00 34.96 3.16
1887 1985 4.541973 ACTTCAAATCCCTGAAATTGGC 57.458 40.909 0.00 0.00 34.96 4.52
1888 1986 3.903090 ACTTCAAATCCCTGAAATTGGCA 59.097 39.130 0.00 0.00 34.96 4.92
1889 1987 3.959535 TCAAATCCCTGAAATTGGCAC 57.040 42.857 0.00 0.00 0.00 5.01
1890 1988 3.237746 TCAAATCCCTGAAATTGGCACA 58.762 40.909 0.00 0.00 0.00 4.57
1891 1989 3.006752 TCAAATCCCTGAAATTGGCACAC 59.993 43.478 0.00 0.00 39.29 3.82
1892 1990 1.560505 ATCCCTGAAATTGGCACACC 58.439 50.000 0.00 0.00 39.29 4.16
1893 1991 0.893270 TCCCTGAAATTGGCACACCG 60.893 55.000 0.00 0.00 39.29 4.94
1894 1992 0.893270 CCCTGAAATTGGCACACCGA 60.893 55.000 0.00 0.00 39.29 4.69
1895 1993 0.958091 CCTGAAATTGGCACACCGAA 59.042 50.000 0.00 0.00 39.29 4.30
1896 1994 1.335872 CCTGAAATTGGCACACCGAAC 60.336 52.381 0.00 0.00 39.29 3.95
1897 1995 1.608590 CTGAAATTGGCACACCGAACT 59.391 47.619 0.00 0.00 39.29 3.01
1898 1996 2.028130 TGAAATTGGCACACCGAACTT 58.972 42.857 0.00 0.00 39.29 2.66
1899 1997 2.428890 TGAAATTGGCACACCGAACTTT 59.571 40.909 0.00 0.00 39.29 2.66
1900 1998 2.793278 AATTGGCACACCGAACTTTC 57.207 45.000 0.00 0.00 39.29 2.62
1901 1999 1.981256 ATTGGCACACCGAACTTTCT 58.019 45.000 0.00 0.00 39.29 2.52
1902 2000 2.623878 TTGGCACACCGAACTTTCTA 57.376 45.000 0.00 0.00 39.29 2.10
1903 2001 2.623878 TGGCACACCGAACTTTCTAA 57.376 45.000 0.00 0.00 39.70 2.10
1904 2002 3.134574 TGGCACACCGAACTTTCTAAT 57.865 42.857 0.00 0.00 39.70 1.73
1905 2003 3.071479 TGGCACACCGAACTTTCTAATC 58.929 45.455 0.00 0.00 39.70 1.75
1906 2004 2.418976 GGCACACCGAACTTTCTAATCC 59.581 50.000 0.00 0.00 0.00 3.01
1907 2005 3.335579 GCACACCGAACTTTCTAATCCT 58.664 45.455 0.00 0.00 0.00 3.24
1908 2006 4.501071 GCACACCGAACTTTCTAATCCTA 58.499 43.478 0.00 0.00 0.00 2.94
1909 2007 4.567159 GCACACCGAACTTTCTAATCCTAG 59.433 45.833 0.00 0.00 0.00 3.02
1910 2008 5.721232 CACACCGAACTTTCTAATCCTAGT 58.279 41.667 0.00 0.00 0.00 2.57
1911 2009 5.805994 CACACCGAACTTTCTAATCCTAGTC 59.194 44.000 0.00 0.00 0.00 2.59
1912 2010 5.715753 ACACCGAACTTTCTAATCCTAGTCT 59.284 40.000 0.00 0.00 0.00 3.24
1913 2011 6.888632 ACACCGAACTTTCTAATCCTAGTCTA 59.111 38.462 0.00 0.00 0.00 2.59
1914 2012 7.560626 ACACCGAACTTTCTAATCCTAGTCTAT 59.439 37.037 0.00 0.00 0.00 1.98
1915 2013 8.414778 CACCGAACTTTCTAATCCTAGTCTATT 58.585 37.037 0.00 0.00 0.00 1.73
1916 2014 8.979534 ACCGAACTTTCTAATCCTAGTCTATTT 58.020 33.333 0.00 0.00 0.00 1.40
1917 2015 9.819267 CCGAACTTTCTAATCCTAGTCTATTTT 57.181 33.333 0.00 0.00 0.00 1.82
1928 2026 6.420638 TCCTAGTCTATTTTAAACCTTGGGC 58.579 40.000 0.00 0.00 0.00 5.36
1929 2027 6.216868 TCCTAGTCTATTTTAAACCTTGGGCT 59.783 38.462 0.00 0.00 0.00 5.19
1930 2028 6.318900 CCTAGTCTATTTTAAACCTTGGGCTG 59.681 42.308 0.00 0.00 0.00 4.85
1931 2029 5.016831 AGTCTATTTTAAACCTTGGGCTGG 58.983 41.667 0.00 0.00 0.00 4.85
1932 2030 4.770531 GTCTATTTTAAACCTTGGGCTGGT 59.229 41.667 0.00 0.00 39.91 4.00
1937 2035 2.425562 AACCTTGGGCTGGTTTTCG 58.574 52.632 4.74 0.00 44.54 3.46
1938 2036 0.106419 AACCTTGGGCTGGTTTTCGA 60.106 50.000 4.74 0.00 44.54 3.71
1939 2037 0.112412 ACCTTGGGCTGGTTTTCGAT 59.888 50.000 0.00 0.00 33.34 3.59
1940 2038 0.527565 CCTTGGGCTGGTTTTCGATG 59.472 55.000 0.00 0.00 0.00 3.84
1941 2039 0.527565 CTTGGGCTGGTTTTCGATGG 59.472 55.000 0.00 0.00 0.00 3.51
1942 2040 0.897863 TTGGGCTGGTTTTCGATGGG 60.898 55.000 0.00 0.00 0.00 4.00
1943 2041 1.001393 GGGCTGGTTTTCGATGGGA 60.001 57.895 0.00 0.00 0.00 4.37
1944 2042 0.395724 GGGCTGGTTTTCGATGGGAT 60.396 55.000 0.00 0.00 0.00 3.85
1945 2043 1.474330 GGCTGGTTTTCGATGGGATT 58.526 50.000 0.00 0.00 0.00 3.01
1946 2044 1.824852 GGCTGGTTTTCGATGGGATTT 59.175 47.619 0.00 0.00 0.00 2.17
1947 2045 2.233676 GGCTGGTTTTCGATGGGATTTT 59.766 45.455 0.00 0.00 0.00 1.82
1948 2046 3.306710 GGCTGGTTTTCGATGGGATTTTT 60.307 43.478 0.00 0.00 0.00 1.94
1949 2047 3.926527 GCTGGTTTTCGATGGGATTTTTC 59.073 43.478 0.00 0.00 0.00 2.29
1950 2048 4.165779 CTGGTTTTCGATGGGATTTTTCG 58.834 43.478 0.00 0.00 0.00 3.46
1951 2049 3.821600 TGGTTTTCGATGGGATTTTTCGA 59.178 39.130 0.00 0.00 39.88 3.71
1952 2050 4.163552 GGTTTTCGATGGGATTTTTCGAC 58.836 43.478 0.00 0.00 41.18 4.20
1953 2051 3.733024 TTTCGATGGGATTTTTCGACG 57.267 42.857 0.00 0.00 41.18 5.12
1954 2052 1.647346 TCGATGGGATTTTTCGACGG 58.353 50.000 0.00 0.00 37.01 4.79
1955 2053 0.655733 CGATGGGATTTTTCGACGGG 59.344 55.000 0.00 0.00 34.92 5.28
1956 2054 1.021968 GATGGGATTTTTCGACGGGG 58.978 55.000 0.00 0.00 0.00 5.73
1957 2055 0.395173 ATGGGATTTTTCGACGGGGG 60.395 55.000 0.00 0.00 0.00 5.40
1958 2056 2.412323 GGGATTTTTCGACGGGGGC 61.412 63.158 0.00 0.00 0.00 5.80
1959 2057 1.676303 GGATTTTTCGACGGGGGCA 60.676 57.895 0.00 0.00 0.00 5.36
1960 2058 1.654023 GGATTTTTCGACGGGGGCAG 61.654 60.000 0.00 0.00 0.00 4.85
1961 2059 2.266376 GATTTTTCGACGGGGGCAGC 62.266 60.000 0.00 0.00 0.00 5.25
1962 2060 3.776347 TTTTTCGACGGGGGCAGCA 62.776 57.895 0.00 0.00 0.00 4.41
1963 2061 4.697756 TTTCGACGGGGGCAGCAG 62.698 66.667 0.00 0.00 0.00 4.24
1975 2073 4.020617 CAGCAGGTTGAGCCGGGA 62.021 66.667 2.18 0.00 43.70 5.14
1976 2074 3.011517 AGCAGGTTGAGCCGGGAT 61.012 61.111 2.18 0.00 43.70 3.85
1977 2075 2.514824 GCAGGTTGAGCCGGGATC 60.515 66.667 5.08 5.08 43.70 3.36
1978 2076 2.989639 CAGGTTGAGCCGGGATCA 59.010 61.111 11.64 11.64 43.70 2.92
1979 2077 1.528824 CAGGTTGAGCCGGGATCAT 59.471 57.895 16.77 0.00 43.70 2.45
1980 2078 0.107017 CAGGTTGAGCCGGGATCATT 60.107 55.000 16.77 2.24 43.70 2.57
1981 2079 0.107017 AGGTTGAGCCGGGATCATTG 60.107 55.000 16.77 0.00 43.70 2.82
1982 2080 1.103398 GGTTGAGCCGGGATCATTGG 61.103 60.000 16.77 0.00 0.00 3.16
1983 2081 0.394352 GTTGAGCCGGGATCATTGGT 60.394 55.000 16.77 0.00 0.00 3.67
1984 2082 0.394216 TTGAGCCGGGATCATTGGTG 60.394 55.000 16.77 0.00 0.00 4.17
1985 2083 1.271127 TGAGCCGGGATCATTGGTGA 61.271 55.000 11.64 0.00 39.04 4.02
1986 2084 0.815615 GAGCCGGGATCATTGGTGAC 60.816 60.000 7.56 0.00 37.14 3.67
1987 2085 1.224592 GCCGGGATCATTGGTGACT 59.775 57.895 2.18 0.00 37.14 3.41
1988 2086 1.097547 GCCGGGATCATTGGTGACTG 61.098 60.000 2.18 0.00 37.14 3.51
1989 2087 0.464373 CCGGGATCATTGGTGACTGG 60.464 60.000 0.00 0.00 37.14 4.00
1990 2088 0.464373 CGGGATCATTGGTGACTGGG 60.464 60.000 0.00 0.00 37.14 4.45
1991 2089 0.753111 GGGATCATTGGTGACTGGGC 60.753 60.000 0.00 0.00 37.14 5.36
1992 2090 0.753111 GGATCATTGGTGACTGGGCC 60.753 60.000 0.00 0.00 37.14 5.80
1993 2091 1.077501 ATCATTGGTGACTGGGCCG 60.078 57.895 0.00 0.00 37.14 6.13
1994 2092 2.556840 ATCATTGGTGACTGGGCCGG 62.557 60.000 11.83 11.83 37.14 6.13
1995 2093 4.740822 ATTGGTGACTGGGCCGGC 62.741 66.667 21.18 21.18 0.00 6.13
2009 2107 4.690719 CGGCCCACCAAGCGTGTA 62.691 66.667 0.00 0.00 41.26 2.90
2010 2108 2.746277 GGCCCACCAAGCGTGTAG 60.746 66.667 0.00 0.00 41.26 2.74
2021 2119 3.067132 GCGTGTAGCGTGTTTTTCC 57.933 52.632 0.00 0.00 43.66 3.13
2022 2120 0.584876 GCGTGTAGCGTGTTTTTCCT 59.415 50.000 0.00 0.00 43.66 3.36
2023 2121 1.003223 GCGTGTAGCGTGTTTTTCCTT 60.003 47.619 0.00 0.00 43.66 3.36
2024 2122 2.540157 GCGTGTAGCGTGTTTTTCCTTT 60.540 45.455 0.00 0.00 43.66 3.11
2025 2123 3.033185 CGTGTAGCGTGTTTTTCCTTTG 58.967 45.455 0.00 0.00 35.54 2.77
2026 2124 3.242478 CGTGTAGCGTGTTTTTCCTTTGA 60.242 43.478 0.00 0.00 35.54 2.69
2027 2125 4.033019 GTGTAGCGTGTTTTTCCTTTGAC 58.967 43.478 0.00 0.00 0.00 3.18
2028 2126 3.942748 TGTAGCGTGTTTTTCCTTTGACT 59.057 39.130 0.00 0.00 0.00 3.41
2029 2127 4.396790 TGTAGCGTGTTTTTCCTTTGACTT 59.603 37.500 0.00 0.00 0.00 3.01
2030 2128 5.585445 TGTAGCGTGTTTTTCCTTTGACTTA 59.415 36.000 0.00 0.00 0.00 2.24
2031 2129 5.169836 AGCGTGTTTTTCCTTTGACTTAG 57.830 39.130 0.00 0.00 0.00 2.18
2032 2130 4.879545 AGCGTGTTTTTCCTTTGACTTAGA 59.120 37.500 0.00 0.00 0.00 2.10
2033 2131 5.355910 AGCGTGTTTTTCCTTTGACTTAGAA 59.644 36.000 0.00 0.00 0.00 2.10
2034 2132 6.031471 GCGTGTTTTTCCTTTGACTTAGAAA 58.969 36.000 0.00 0.00 0.00 2.52
2035 2133 6.528774 GCGTGTTTTTCCTTTGACTTAGAAAA 59.471 34.615 0.00 0.00 36.66 2.29
2036 2134 7.222031 GCGTGTTTTTCCTTTGACTTAGAAAAT 59.778 33.333 0.00 0.00 37.86 1.82
2037 2135 9.724839 CGTGTTTTTCCTTTGACTTAGAAAATA 57.275 29.630 0.00 0.00 37.86 1.40
2040 2138 9.472361 GTTTTTCCTTTGACTTAGAAAATACCC 57.528 33.333 0.00 0.00 37.86 3.69
2041 2139 7.443259 TTTCCTTTGACTTAGAAAATACCCG 57.557 36.000 0.00 0.00 0.00 5.28
2042 2140 6.117975 TCCTTTGACTTAGAAAATACCCGT 57.882 37.500 0.00 0.00 0.00 5.28
2043 2141 6.168389 TCCTTTGACTTAGAAAATACCCGTC 58.832 40.000 0.00 0.00 0.00 4.79
2044 2142 5.935789 CCTTTGACTTAGAAAATACCCGTCA 59.064 40.000 0.00 0.00 0.00 4.35
2045 2143 6.428771 CCTTTGACTTAGAAAATACCCGTCAA 59.571 38.462 0.00 0.00 37.91 3.18
2046 2144 7.040961 CCTTTGACTTAGAAAATACCCGTCAAA 60.041 37.037 12.32 12.32 43.43 2.69
2047 2145 7.804843 TTGACTTAGAAAATACCCGTCAAAA 57.195 32.000 0.00 0.00 37.08 2.44
2048 2146 7.804843 TGACTTAGAAAATACCCGTCAAAAA 57.195 32.000 0.00 0.00 0.00 1.94
2076 2174 1.884235 AAAAGACAAGACTCAGCGGG 58.116 50.000 0.00 0.00 0.00 6.13
2077 2175 1.048601 AAAGACAAGACTCAGCGGGA 58.951 50.000 0.00 0.00 0.00 5.14
2078 2176 1.048601 AAGACAAGACTCAGCGGGAA 58.951 50.000 0.00 0.00 0.00 3.97
2079 2177 1.270907 AGACAAGACTCAGCGGGAAT 58.729 50.000 0.00 0.00 0.00 3.01
2080 2178 1.205893 AGACAAGACTCAGCGGGAATC 59.794 52.381 0.00 0.00 0.00 2.52
2081 2179 0.108615 ACAAGACTCAGCGGGAATCG 60.109 55.000 0.00 0.00 42.76 3.34
2082 2180 0.173481 CAAGACTCAGCGGGAATCGA 59.827 55.000 0.00 0.00 42.43 3.59
2083 2181 0.895530 AAGACTCAGCGGGAATCGAA 59.104 50.000 0.00 0.00 42.43 3.71
2084 2182 0.173708 AGACTCAGCGGGAATCGAAC 59.826 55.000 0.00 0.00 42.43 3.95
2085 2183 0.173708 GACTCAGCGGGAATCGAACT 59.826 55.000 0.00 0.00 42.43 3.01
2086 2184 0.608640 ACTCAGCGGGAATCGAACTT 59.391 50.000 0.00 0.00 42.43 2.66
2087 2185 1.002366 CTCAGCGGGAATCGAACTTG 58.998 55.000 0.00 0.00 42.43 3.16
2088 2186 0.606096 TCAGCGGGAATCGAACTTGA 59.394 50.000 0.00 0.00 42.43 3.02
2089 2187 1.002366 CAGCGGGAATCGAACTTGAG 58.998 55.000 0.00 0.00 42.43 3.02
2090 2188 0.895530 AGCGGGAATCGAACTTGAGA 59.104 50.000 0.00 0.00 42.43 3.27
2091 2189 1.482593 AGCGGGAATCGAACTTGAGAT 59.517 47.619 0.00 0.00 42.43 2.75
2092 2190 1.861575 GCGGGAATCGAACTTGAGATC 59.138 52.381 0.00 0.00 42.43 2.75
2093 2191 2.482142 GCGGGAATCGAACTTGAGATCT 60.482 50.000 0.00 0.00 42.43 2.75
2094 2192 3.119291 CGGGAATCGAACTTGAGATCTG 58.881 50.000 0.00 0.00 42.43 2.90
2095 2193 3.181486 CGGGAATCGAACTTGAGATCTGA 60.181 47.826 0.00 0.00 42.43 3.27
2096 2194 4.116238 GGGAATCGAACTTGAGATCTGAC 58.884 47.826 0.00 0.00 0.00 3.51
2097 2195 3.794028 GGAATCGAACTTGAGATCTGACG 59.206 47.826 0.00 0.00 0.00 4.35
2098 2196 2.264109 TCGAACTTGAGATCTGACGC 57.736 50.000 0.00 0.00 0.00 5.19
2099 2197 1.813178 TCGAACTTGAGATCTGACGCT 59.187 47.619 0.00 0.00 0.00 5.07
2100 2198 1.916651 CGAACTTGAGATCTGACGCTG 59.083 52.381 0.00 0.00 0.00 5.18
2101 2199 1.658095 GAACTTGAGATCTGACGCTGC 59.342 52.381 0.00 0.00 0.00 5.25
2102 2200 0.605083 ACTTGAGATCTGACGCTGCA 59.395 50.000 0.00 0.00 0.00 4.41
2103 2201 1.001293 ACTTGAGATCTGACGCTGCAA 59.999 47.619 0.00 0.00 0.00 4.08
2104 2202 2.071540 CTTGAGATCTGACGCTGCAAA 58.928 47.619 0.00 0.00 0.00 3.68
2105 2203 2.168326 TGAGATCTGACGCTGCAAAA 57.832 45.000 0.00 0.00 0.00 2.44
2106 2204 1.800586 TGAGATCTGACGCTGCAAAAC 59.199 47.619 0.00 0.00 0.00 2.43
2107 2205 2.072298 GAGATCTGACGCTGCAAAACT 58.928 47.619 0.00 0.00 0.00 2.66
2108 2206 2.481952 GAGATCTGACGCTGCAAAACTT 59.518 45.455 0.00 0.00 0.00 2.66
2109 2207 2.225019 AGATCTGACGCTGCAAAACTTG 59.775 45.455 0.00 0.00 0.00 3.16
2110 2208 0.662619 TCTGACGCTGCAAAACTTGG 59.337 50.000 0.00 0.00 0.00 3.61
2111 2209 0.381801 CTGACGCTGCAAAACTTGGT 59.618 50.000 0.00 0.00 0.00 3.67
2112 2210 1.601903 CTGACGCTGCAAAACTTGGTA 59.398 47.619 0.00 0.00 0.00 3.25
2113 2211 1.332375 TGACGCTGCAAAACTTGGTAC 59.668 47.619 0.00 0.00 0.00 3.34
2114 2212 1.332375 GACGCTGCAAAACTTGGTACA 59.668 47.619 0.00 0.00 0.00 2.90
2161 2259 8.934507 AACTAGTCTACTTAGCATTGTGATTC 57.065 34.615 0.00 0.00 0.00 2.52
2162 2260 7.197017 ACTAGTCTACTTAGCATTGTGATTCG 58.803 38.462 0.00 0.00 0.00 3.34
2163 2261 6.208988 AGTCTACTTAGCATTGTGATTCGA 57.791 37.500 0.00 0.00 0.00 3.71
2164 2262 6.631016 AGTCTACTTAGCATTGTGATTCGAA 58.369 36.000 0.00 0.00 0.00 3.71
2165 2263 7.097192 AGTCTACTTAGCATTGTGATTCGAAA 58.903 34.615 0.00 0.00 0.00 3.46
2166 2264 7.602644 AGTCTACTTAGCATTGTGATTCGAAAA 59.397 33.333 0.00 0.00 0.00 2.29
2167 2265 7.688578 GTCTACTTAGCATTGTGATTCGAAAAC 59.311 37.037 0.00 4.58 0.00 2.43
2168 2266 6.312399 ACTTAGCATTGTGATTCGAAAACA 57.688 33.333 0.00 7.47 0.00 2.83
2169 2267 6.734137 ACTTAGCATTGTGATTCGAAAACAA 58.266 32.000 23.78 23.78 38.13 2.83
2170 2268 7.370383 ACTTAGCATTGTGATTCGAAAACAAT 58.630 30.769 25.37 25.37 43.49 2.71
2171 2269 7.867403 ACTTAGCATTGTGATTCGAAAACAATT 59.133 29.630 27.16 20.33 41.39 2.32
2172 2270 6.695292 AGCATTGTGATTCGAAAACAATTC 57.305 33.333 27.16 24.14 41.39 2.17
2173 2271 5.343058 AGCATTGTGATTCGAAAACAATTCG 59.657 36.000 27.16 21.10 41.39 3.34
2174 2272 5.443170 GCATTGTGATTCGAAAACAATTCGG 60.443 40.000 27.16 20.64 41.39 4.30
2175 2273 5.425577 TTGTGATTCGAAAACAATTCGGA 57.574 34.783 19.96 2.45 41.78 4.55
2176 2274 5.425577 TGTGATTCGAAAACAATTCGGAA 57.574 34.783 13.01 0.00 41.78 4.30
2177 2275 6.007936 TGTGATTCGAAAACAATTCGGAAT 57.992 33.333 13.01 0.00 41.78 3.01
2178 2276 7.135089 TGTGATTCGAAAACAATTCGGAATA 57.865 32.000 13.01 0.00 41.78 1.75
2179 2277 7.757526 TGTGATTCGAAAACAATTCGGAATAT 58.242 30.769 13.01 0.00 41.78 1.28
2180 2278 8.240682 TGTGATTCGAAAACAATTCGGAATATT 58.759 29.630 13.01 0.00 41.78 1.28
2181 2279 9.072294 GTGATTCGAAAACAATTCGGAATATTT 57.928 29.630 0.00 5.51 41.78 1.40
2182 2280 9.632807 TGATTCGAAAACAATTCGGAATATTTT 57.367 25.926 18.32 18.32 41.78 1.82
2213 2311 9.405587 TGAAAGTAATCAACGATTTTGAAATCC 57.594 29.630 10.06 0.00 41.30 3.01
2214 2312 8.447787 AAAGTAATCAACGATTTTGAAATCCG 57.552 30.769 10.06 8.19 41.30 4.18
2215 2313 7.372451 AGTAATCAACGATTTTGAAATCCGA 57.628 32.000 10.06 5.87 41.30 4.55
2216 2314 7.812648 AGTAATCAACGATTTTGAAATCCGAA 58.187 30.769 10.06 0.00 41.30 4.30
2217 2315 8.458843 AGTAATCAACGATTTTGAAATCCGAAT 58.541 29.630 10.06 2.56 41.30 3.34
2218 2316 9.710979 GTAATCAACGATTTTGAAATCCGAATA 57.289 29.630 10.06 1.83 41.30 1.75
2221 2319 9.878599 ATCAACGATTTTGAAATCCGAATATAC 57.121 29.630 10.06 0.00 41.30 1.47
2222 2320 9.104965 TCAACGATTTTGAAATCCGAATATACT 57.895 29.630 10.06 0.00 41.30 2.12
2223 2321 9.716507 CAACGATTTTGAAATCCGAATATACTT 57.283 29.630 10.06 0.00 41.30 2.24
2231 2329 9.878667 TTGAAATCCGAATATACTTAACAGTGA 57.121 29.630 0.00 0.00 34.06 3.41
2232 2330 9.878667 TGAAATCCGAATATACTTAACAGTGAA 57.121 29.630 0.00 0.00 34.06 3.18
2237 2335 9.878667 TCCGAATATACTTAACAGTGAAAATCA 57.121 29.630 0.00 0.00 34.06 2.57
2251 2349 9.325198 ACAGTGAAAATCAGGTTTTAAAATTCC 57.675 29.630 3.52 1.72 40.04 3.01
2252 2350 9.323985 CAGTGAAAATCAGGTTTTAAAATTCCA 57.676 29.630 3.52 0.00 40.04 3.53
2253 2351 9.898152 AGTGAAAATCAGGTTTTAAAATTCCAA 57.102 25.926 3.52 0.00 40.04 3.53
2259 2357 9.625747 AATCAGGTTTTAAAATTCCAAACATGT 57.374 25.926 15.54 0.00 41.01 3.21
2260 2358 9.625747 ATCAGGTTTTAAAATTCCAAACATGTT 57.374 25.926 4.92 4.92 41.01 2.71
2261 2359 9.454859 TCAGGTTTTAAAATTCCAAACATGTTT 57.545 25.926 18.13 18.13 41.01 2.83
2293 2391 9.757227 AAATGTGAAGAATTTTTGGAATTACGA 57.243 25.926 0.00 0.00 0.00 3.43
2294 2392 9.927668 AATGTGAAGAATTTTTGGAATTACGAT 57.072 25.926 0.00 0.00 0.00 3.73
2295 2393 9.927668 ATGTGAAGAATTTTTGGAATTACGATT 57.072 25.926 0.00 0.00 0.00 3.34
2296 2394 9.757227 TGTGAAGAATTTTTGGAATTACGATTT 57.243 25.926 0.00 0.00 0.00 2.17
2307 2405 9.887406 TTTGGAATTACGATTTCTTTCTAACAC 57.113 29.630 0.00 0.00 0.00 3.32
2308 2406 8.610248 TGGAATTACGATTTCTTTCTAACACA 57.390 30.769 0.00 0.00 0.00 3.72
2309 2407 9.058174 TGGAATTACGATTTCTTTCTAACACAA 57.942 29.630 0.00 0.00 0.00 3.33
2310 2408 9.887406 GGAATTACGATTTCTTTCTAACACAAA 57.113 29.630 0.00 0.00 0.00 2.83
2316 2414 9.581099 ACGATTTCTTTCTAACACAAACAAATT 57.419 25.926 0.00 0.00 0.00 1.82
2324 2422 9.798885 TTTCTAACACAAACAAATTTTCAAACG 57.201 25.926 0.00 0.00 0.00 3.60
2325 2423 8.522178 TCTAACACAAACAAATTTTCAAACGT 57.478 26.923 0.00 0.00 0.00 3.99
2326 2424 8.428536 TCTAACACAAACAAATTTTCAAACGTG 58.571 29.630 0.00 0.00 0.00 4.49
2327 2425 6.771188 ACACAAACAAATTTTCAAACGTGA 57.229 29.167 0.00 0.00 0.00 4.35
2328 2426 7.178712 ACACAAACAAATTTTCAAACGTGAA 57.821 28.000 0.00 0.00 42.12 3.18
2329 2427 7.066505 ACACAAACAAATTTTCAAACGTGAAC 58.933 30.769 0.00 0.00 43.52 3.18
2330 2428 6.518054 CACAAACAAATTTTCAAACGTGAACC 59.482 34.615 0.00 0.00 43.52 3.62
2331 2429 6.202954 ACAAACAAATTTTCAAACGTGAACCA 59.797 30.769 0.00 0.00 43.52 3.67
2332 2430 6.976636 AACAAATTTTCAAACGTGAACCAT 57.023 29.167 0.00 0.00 43.52 3.55
2333 2431 6.976636 ACAAATTTTCAAACGTGAACCATT 57.023 29.167 0.00 0.00 43.52 3.16
2334 2432 7.371126 ACAAATTTTCAAACGTGAACCATTT 57.629 28.000 0.00 0.00 43.52 2.32
2335 2433 7.811653 ACAAATTTTCAAACGTGAACCATTTT 58.188 26.923 0.00 0.00 43.52 1.82
2336 2434 8.293157 ACAAATTTTCAAACGTGAACCATTTTT 58.707 25.926 0.00 0.00 43.52 1.94
2337 2435 8.573801 CAAATTTTCAAACGTGAACCATTTTTG 58.426 29.630 0.00 0.00 43.52 2.44
2338 2436 7.602517 ATTTTCAAACGTGAACCATTTTTGA 57.397 28.000 0.00 0.00 43.52 2.69
2339 2437 7.421530 TTTTCAAACGTGAACCATTTTTGAA 57.578 28.000 4.17 4.17 43.52 2.69
2340 2438 7.421530 TTTCAAACGTGAACCATTTTTGAAA 57.578 28.000 13.70 13.70 46.32 2.69
2341 2439 7.602517 TTCAAACGTGAACCATTTTTGAAAT 57.397 28.000 5.54 0.00 41.09 2.17
2342 2440 7.227992 TCAAACGTGAACCATTTTTGAAATC 57.772 32.000 0.00 0.00 34.16 2.17
2343 2441 6.256757 TCAAACGTGAACCATTTTTGAAATCC 59.743 34.615 0.00 0.00 34.16 3.01
2344 2442 4.627058 ACGTGAACCATTTTTGAAATCCC 58.373 39.130 0.00 0.00 0.00 3.85
2345 2443 4.343814 ACGTGAACCATTTTTGAAATCCCT 59.656 37.500 0.00 0.00 0.00 4.20
2346 2444 4.685628 CGTGAACCATTTTTGAAATCCCTG 59.314 41.667 0.00 0.00 0.00 4.45
2347 2445 5.508825 CGTGAACCATTTTTGAAATCCCTGA 60.509 40.000 0.00 0.00 0.00 3.86
2348 2446 6.287525 GTGAACCATTTTTGAAATCCCTGAA 58.712 36.000 0.00 0.00 0.00 3.02
2349 2447 6.936335 GTGAACCATTTTTGAAATCCCTGAAT 59.064 34.615 0.00 0.00 0.00 2.57
2350 2448 8.093927 GTGAACCATTTTTGAAATCCCTGAATA 58.906 33.333 0.00 0.00 0.00 1.75
2351 2449 8.824783 TGAACCATTTTTGAAATCCCTGAATAT 58.175 29.630 0.00 0.00 0.00 1.28
2352 2450 9.671279 GAACCATTTTTGAAATCCCTGAATATT 57.329 29.630 0.00 0.00 0.00 1.28
2401 2499 8.962857 AACATGAACAAAATTTTCAAAACACC 57.037 26.923 0.00 0.00 36.57 4.16
2402 2500 8.103948 ACATGAACAAAATTTTCAAAACACCA 57.896 26.923 0.00 0.00 36.57 4.17
2403 2501 8.571336 ACATGAACAAAATTTTCAAAACACCAA 58.429 25.926 0.00 0.00 36.57 3.67
2404 2502 8.848528 CATGAACAAAATTTTCAAAACACCAAC 58.151 29.630 0.00 0.00 36.57 3.77
2405 2503 7.930217 TGAACAAAATTTTCAAAACACCAACA 58.070 26.923 0.00 0.00 29.89 3.33
2406 2504 8.571336 TGAACAAAATTTTCAAAACACCAACAT 58.429 25.926 0.00 0.00 29.89 2.71
2407 2505 9.404348 GAACAAAATTTTCAAAACACCAACATT 57.596 25.926 0.00 0.00 0.00 2.71
2408 2506 9.755804 AACAAAATTTTCAAAACACCAACATTT 57.244 22.222 0.00 0.00 0.00 2.32
2409 2507 9.755804 ACAAAATTTTCAAAACACCAACATTTT 57.244 22.222 0.00 0.00 0.00 1.82
2454 2552 9.921637 ATAAAGTGAGAACAACTTTTCAAAACA 57.078 25.926 6.84 0.00 35.59 2.83
2455 2553 8.831715 AAAGTGAGAACAACTTTTCAAAACAT 57.168 26.923 0.00 0.00 30.45 2.71
2456 2554 7.816945 AGTGAGAACAACTTTTCAAAACATG 57.183 32.000 0.00 0.00 0.00 3.21
2457 2555 7.601856 AGTGAGAACAACTTTTCAAAACATGA 58.398 30.769 0.00 0.00 35.85 3.07
2458 2556 8.087750 AGTGAGAACAACTTTTCAAAACATGAA 58.912 29.630 0.00 0.00 46.22 2.57
2492 2590 9.515020 AAAACATACACATACTTTGAACAAGTG 57.485 29.630 0.00 0.00 0.00 3.16
2493 2591 7.202016 ACATACACATACTTTGAACAAGTGG 57.798 36.000 0.00 0.00 0.00 4.00
2494 2592 6.206634 ACATACACATACTTTGAACAAGTGGG 59.793 38.462 0.00 2.38 0.00 4.61
2495 2593 4.787551 ACACATACTTTGAACAAGTGGGA 58.212 39.130 0.00 0.00 0.00 4.37
2496 2594 5.197451 ACACATACTTTGAACAAGTGGGAA 58.803 37.500 0.00 0.00 0.00 3.97
2497 2595 5.067283 ACACATACTTTGAACAAGTGGGAAC 59.933 40.000 0.00 0.00 0.00 3.62
2498 2596 5.067153 CACATACTTTGAACAAGTGGGAACA 59.933 40.000 0.00 0.00 38.70 3.18
2499 2597 5.654650 ACATACTTTGAACAAGTGGGAACAA 59.345 36.000 0.00 0.00 46.06 2.83
2500 2598 6.153680 ACATACTTTGAACAAGTGGGAACAAA 59.846 34.615 0.00 0.00 46.06 2.83
2501 2599 5.675684 ACTTTGAACAAGTGGGAACAAAT 57.324 34.783 0.00 0.00 46.06 2.32
2502 2600 6.048732 ACTTTGAACAAGTGGGAACAAATT 57.951 33.333 0.00 0.00 46.06 1.82
2503 2601 6.472016 ACTTTGAACAAGTGGGAACAAATTT 58.528 32.000 0.00 0.00 46.06 1.82
2504 2602 7.616313 ACTTTGAACAAGTGGGAACAAATTTA 58.384 30.769 0.00 0.00 46.06 1.40
2505 2603 7.763985 ACTTTGAACAAGTGGGAACAAATTTAG 59.236 33.333 0.00 0.00 46.06 1.85
2506 2604 7.411486 TTGAACAAGTGGGAACAAATTTAGA 57.589 32.000 0.00 0.00 46.06 2.10
2507 2605 7.411486 TGAACAAGTGGGAACAAATTTAGAA 57.589 32.000 0.00 0.00 46.06 2.10
2508 2606 7.841956 TGAACAAGTGGGAACAAATTTAGAAA 58.158 30.769 0.00 0.00 46.06 2.52
2509 2607 7.762159 TGAACAAGTGGGAACAAATTTAGAAAC 59.238 33.333 0.00 0.00 46.06 2.78
2510 2608 6.578944 ACAAGTGGGAACAAATTTAGAAACC 58.421 36.000 0.00 0.00 46.06 3.27
2511 2609 6.382859 ACAAGTGGGAACAAATTTAGAAACCT 59.617 34.615 0.00 0.00 46.06 3.50
2512 2610 6.405278 AGTGGGAACAAATTTAGAAACCTG 57.595 37.500 0.00 0.00 46.06 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.250901 AAGAAGGTTGCATGCCTCGT 60.251 50.000 16.68 6.91 34.81 4.18
1 2 0.883833 AAAGAAGGTTGCATGCCTCG 59.116 50.000 16.68 0.00 34.81 4.63
2 3 2.669391 CGAAAAGAAGGTTGCATGCCTC 60.669 50.000 16.68 7.97 34.81 4.70
3 4 1.270550 CGAAAAGAAGGTTGCATGCCT 59.729 47.619 16.68 1.54 38.11 4.75
4 5 1.701704 CGAAAAGAAGGTTGCATGCC 58.298 50.000 16.68 0.00 0.00 4.40
5 6 1.063031 GCGAAAAGAAGGTTGCATGC 58.937 50.000 11.82 11.82 0.00 4.06
6 7 2.712057 AGCGAAAAGAAGGTTGCATG 57.288 45.000 0.00 0.00 0.00 4.06
7 8 3.733443 AAAGCGAAAAGAAGGTTGCAT 57.267 38.095 0.00 0.00 0.00 3.96
8 9 4.846779 ATAAAGCGAAAAGAAGGTTGCA 57.153 36.364 0.00 0.00 0.00 4.08
9 10 6.525121 AAAATAAAGCGAAAAGAAGGTTGC 57.475 33.333 0.00 0.00 0.00 4.17
10 11 6.129194 CCGAAAATAAAGCGAAAAGAAGGTTG 60.129 38.462 0.00 0.00 0.00 3.77
11 12 5.918576 CCGAAAATAAAGCGAAAAGAAGGTT 59.081 36.000 0.00 0.00 0.00 3.50
12 13 5.009310 ACCGAAAATAAAGCGAAAAGAAGGT 59.991 36.000 0.00 0.00 0.00 3.50
13 14 5.458015 ACCGAAAATAAAGCGAAAAGAAGG 58.542 37.500 0.00 0.00 0.00 3.46
14 15 6.140110 TGACCGAAAATAAAGCGAAAAGAAG 58.860 36.000 0.00 0.00 0.00 2.85
15 16 6.062434 TGACCGAAAATAAAGCGAAAAGAA 57.938 33.333 0.00 0.00 0.00 2.52
32 33 5.466819 CAGTAGCCGAATAATATTGACCGA 58.533 41.667 0.00 0.00 0.00 4.69
34 35 5.790593 TCCAGTAGCCGAATAATATTGACC 58.209 41.667 0.00 0.00 0.00 4.02
36 37 8.783093 CAAAATCCAGTAGCCGAATAATATTGA 58.217 33.333 0.00 0.00 0.00 2.57
37 38 7.538678 GCAAAATCCAGTAGCCGAATAATATTG 59.461 37.037 0.00 0.00 0.00 1.90
38 39 7.230510 TGCAAAATCCAGTAGCCGAATAATATT 59.769 33.333 0.00 0.00 0.00 1.28
39 40 6.714810 TGCAAAATCCAGTAGCCGAATAATAT 59.285 34.615 0.00 0.00 0.00 1.28
40 41 6.058833 TGCAAAATCCAGTAGCCGAATAATA 58.941 36.000 0.00 0.00 0.00 0.98
82 84 3.743636 TCAGGATGACGCGCACGA 61.744 61.111 5.73 0.00 42.56 4.35
90 92 1.868930 CGCTCTCTGCATCAGGATGAC 60.869 57.143 13.24 5.33 41.89 3.06
96 98 2.108566 CCCCGCTCTCTGCATCAG 59.891 66.667 0.00 0.00 43.06 2.90
104 106 0.470268 AGGAGGATAACCCCGCTCTC 60.470 60.000 0.00 0.00 36.73 3.20
107 109 1.296002 AAAAGGAGGATAACCCCGCT 58.704 50.000 0.00 0.00 36.73 5.52
108 110 2.139323 AAAAAGGAGGATAACCCCGC 57.861 50.000 0.00 0.00 36.73 6.13
135 139 9.606631 TGCTTTTTAGTGTGGTTTTGATTATTT 57.393 25.926 0.00 0.00 0.00 1.40
138 142 8.200792 ACATGCTTTTTAGTGTGGTTTTGATTA 58.799 29.630 0.00 0.00 0.00 1.75
149 153 6.823689 CCATAGGAGTACATGCTTTTTAGTGT 59.176 38.462 0.00 0.00 0.00 3.55
159 163 2.874701 CAACAGCCATAGGAGTACATGC 59.125 50.000 0.00 0.00 0.00 4.06
185 189 1.079543 CCAACCAGAGAGAGCCACG 60.080 63.158 0.00 0.00 0.00 4.94
223 227 1.291184 GCGGGAAATGCTTTTGGTGC 61.291 55.000 1.76 0.03 0.00 5.01
243 247 1.719600 CCTTTCTCACGAGGAAGCTG 58.280 55.000 9.29 0.00 41.66 4.24
299 303 1.064060 GATCGCCCAATGGTTTCTTCG 59.936 52.381 0.00 0.00 0.00 3.79
375 379 2.917804 GGGGGTTTTGTTGGGAACA 58.082 52.632 0.00 0.00 40.21 3.18
442 446 1.060937 GCTTGGTTGTATGCGCTCG 59.939 57.895 9.73 0.00 0.00 5.03
516 520 2.028125 GATCGATCCGTTGAGGGGCA 62.028 60.000 14.76 0.00 41.52 5.36
568 578 7.394359 TCAGCTAGAAATCAGTTGCCTTTTTAT 59.606 33.333 0.00 0.00 0.00 1.40
569 579 6.714810 TCAGCTAGAAATCAGTTGCCTTTTTA 59.285 34.615 0.00 0.00 0.00 1.52
603 648 3.232662 CCATGGCCATGTTCCATCATAA 58.767 45.455 37.30 0.00 42.11 1.90
604 649 2.491271 CCCATGGCCATGTTCCATCATA 60.491 50.000 37.30 0.00 42.11 2.15
607 652 1.117142 CCCCATGGCCATGTTCCATC 61.117 60.000 37.30 0.00 42.11 3.51
634 679 1.002544 GTGCACAAGGAAGGAGCTAGT 59.997 52.381 13.17 0.00 0.00 2.57
683 728 5.490139 TCCTTAACGACCGAGTACTAATG 57.510 43.478 0.00 0.00 0.00 1.90
915 970 2.423892 TCGCTCTTCTCTGTGTGGATAC 59.576 50.000 0.00 0.00 0.00 2.24
916 971 2.723273 TCGCTCTTCTCTGTGTGGATA 58.277 47.619 0.00 0.00 0.00 2.59
917 972 1.550327 TCGCTCTTCTCTGTGTGGAT 58.450 50.000 0.00 0.00 0.00 3.41
920 975 2.064762 CCTTTCGCTCTTCTCTGTGTG 58.935 52.381 0.00 0.00 0.00 3.82
1290 1347 3.050275 GGCTCGCGCTTGGTCTTT 61.050 61.111 5.56 0.00 36.09 2.52
1341 1401 3.576356 CGATGGTGGCGATGGTGC 61.576 66.667 0.00 0.00 0.00 5.01
1360 1420 3.114616 CTTGCTGCGGACGTGGAG 61.115 66.667 0.00 0.00 0.00 3.86
1361 1421 3.858868 GACTTGCTGCGGACGTGGA 62.859 63.158 0.00 0.00 0.00 4.02
1371 1431 2.684843 GCTGCCTTCCGACTTGCTG 61.685 63.158 0.00 0.00 0.00 4.41
1622 1688 2.304761 TGGGGGTAGCTTAACAAGACAG 59.695 50.000 0.00 0.00 0.00 3.51
1634 1701 2.365582 CAATGTACACTTGGGGGTAGC 58.634 52.381 0.00 0.00 0.00 3.58
1663 1730 0.847670 TTCTGTTTACACACGCGACG 59.152 50.000 15.93 5.81 0.00 5.12
1675 1742 2.033299 CGGTCACAGCATTGTTCTGTTT 59.967 45.455 0.00 0.00 42.38 2.83
1709 1776 6.489127 TCACGAAGTTCAAAACTCAAAGAA 57.511 33.333 3.32 0.00 41.61 2.52
1711 1778 7.273381 ACAAATCACGAAGTTCAAAACTCAAAG 59.727 33.333 3.32 0.00 41.61 2.77
1740 1838 7.915508 TGTATTTACAACAGAAGTGTCACAAG 58.084 34.615 5.62 0.00 35.08 3.16
1768 1866 3.073650 AGAGACCAAAATTGACAGCTCCT 59.926 43.478 0.00 0.00 0.00 3.69
1804 1902 7.324935 GTCTGTTTTGGACTTTTCCCTTAAAA 58.675 34.615 0.00 0.00 42.01 1.52
1810 1908 3.296854 AGGTCTGTTTTGGACTTTTCCC 58.703 45.455 0.00 0.00 42.01 3.97
1811 1909 4.401202 TGAAGGTCTGTTTTGGACTTTTCC 59.599 41.667 0.00 0.00 43.19 3.13
1812 1910 5.576447 TGAAGGTCTGTTTTGGACTTTTC 57.424 39.130 0.00 0.00 34.09 2.29
1813 1911 5.480422 AGTTGAAGGTCTGTTTTGGACTTTT 59.520 36.000 0.00 0.00 34.09 2.27
1814 1912 5.016831 AGTTGAAGGTCTGTTTTGGACTTT 58.983 37.500 0.00 0.00 36.08 2.66
1815 1913 4.600062 AGTTGAAGGTCTGTTTTGGACTT 58.400 39.130 0.00 0.00 34.47 3.01
1816 1914 4.236527 AGTTGAAGGTCTGTTTTGGACT 57.763 40.909 0.00 0.00 34.47 3.85
1817 1915 4.157840 ACAAGTTGAAGGTCTGTTTTGGAC 59.842 41.667 10.54 0.00 0.00 4.02
1818 1916 4.340617 ACAAGTTGAAGGTCTGTTTTGGA 58.659 39.130 10.54 0.00 0.00 3.53
1819 1917 4.718940 ACAAGTTGAAGGTCTGTTTTGG 57.281 40.909 10.54 0.00 0.00 3.28
1820 1918 6.677781 TCTACAAGTTGAAGGTCTGTTTTG 57.322 37.500 10.54 0.00 0.00 2.44
1821 1919 7.054124 TCATCTACAAGTTGAAGGTCTGTTTT 58.946 34.615 10.54 0.00 0.00 2.43
1822 1920 6.591935 TCATCTACAAGTTGAAGGTCTGTTT 58.408 36.000 10.54 0.00 0.00 2.83
1823 1921 6.174720 TCATCTACAAGTTGAAGGTCTGTT 57.825 37.500 10.54 0.00 0.00 3.16
1824 1922 5.808366 TCATCTACAAGTTGAAGGTCTGT 57.192 39.130 10.54 0.00 0.00 3.41
1825 1923 6.348050 GCTTTCATCTACAAGTTGAAGGTCTG 60.348 42.308 10.54 0.00 35.90 3.51
1826 1924 5.703130 GCTTTCATCTACAAGTTGAAGGTCT 59.297 40.000 10.54 0.00 35.90 3.85
1827 1925 5.703130 AGCTTTCATCTACAAGTTGAAGGTC 59.297 40.000 10.54 4.95 35.90 3.85
1828 1926 5.625150 AGCTTTCATCTACAAGTTGAAGGT 58.375 37.500 10.54 3.59 35.90 3.50
1829 1927 7.672983 TTAGCTTTCATCTACAAGTTGAAGG 57.327 36.000 10.54 5.81 35.90 3.46
1830 1928 9.766277 GATTTAGCTTTCATCTACAAGTTGAAG 57.234 33.333 10.54 1.93 35.90 3.02
1831 1929 9.283768 TGATTTAGCTTTCATCTACAAGTTGAA 57.716 29.630 10.54 0.00 33.49 2.69
1832 1930 8.846943 TGATTTAGCTTTCATCTACAAGTTGA 57.153 30.769 10.54 0.00 0.00 3.18
1833 1931 9.897744 TTTGATTTAGCTTTCATCTACAAGTTG 57.102 29.630 0.00 0.00 0.00 3.16
1834 1932 9.899226 GTTTGATTTAGCTTTCATCTACAAGTT 57.101 29.630 0.00 0.00 0.00 2.66
1835 1933 8.515414 GGTTTGATTTAGCTTTCATCTACAAGT 58.485 33.333 0.00 0.00 0.00 3.16
1836 1934 8.734386 AGGTTTGATTTAGCTTTCATCTACAAG 58.266 33.333 0.00 0.00 0.00 3.16
1837 1935 8.635765 AGGTTTGATTTAGCTTTCATCTACAA 57.364 30.769 0.00 0.00 0.00 2.41
1838 1936 8.514594 CAAGGTTTGATTTAGCTTTCATCTACA 58.485 33.333 0.00 0.00 31.43 2.74
1839 1937 8.730680 TCAAGGTTTGATTTAGCTTTCATCTAC 58.269 33.333 0.00 0.00 34.08 2.59
1840 1938 8.862325 TCAAGGTTTGATTTAGCTTTCATCTA 57.138 30.769 0.00 0.00 34.08 1.98
1841 1939 7.765695 TCAAGGTTTGATTTAGCTTTCATCT 57.234 32.000 0.00 0.00 34.08 2.90
1842 1940 8.084684 AGTTCAAGGTTTGATTTAGCTTTCATC 58.915 33.333 0.00 0.00 39.84 2.92
1843 1941 7.955918 AGTTCAAGGTTTGATTTAGCTTTCAT 58.044 30.769 0.00 0.00 39.84 2.57
1844 1942 7.346751 AGTTCAAGGTTTGATTTAGCTTTCA 57.653 32.000 0.00 0.00 39.84 2.69
1845 1943 7.920682 TGAAGTTCAAGGTTTGATTTAGCTTTC 59.079 33.333 2.20 0.00 39.84 2.62
1846 1944 7.781056 TGAAGTTCAAGGTTTGATTTAGCTTT 58.219 30.769 2.20 0.00 39.84 3.51
1847 1945 7.346751 TGAAGTTCAAGGTTTGATTTAGCTT 57.653 32.000 2.20 0.00 39.84 3.74
1848 1946 6.959639 TGAAGTTCAAGGTTTGATTTAGCT 57.040 33.333 2.20 0.00 39.84 3.32
1849 1947 8.593492 ATTTGAAGTTCAAGGTTTGATTTAGC 57.407 30.769 17.36 0.00 37.70 3.09
1850 1948 9.196552 GGATTTGAAGTTCAAGGTTTGATTTAG 57.803 33.333 17.36 0.00 37.70 1.85
1851 1949 8.147704 GGGATTTGAAGTTCAAGGTTTGATTTA 58.852 33.333 17.36 0.53 37.70 1.40
1852 1950 6.992123 GGGATTTGAAGTTCAAGGTTTGATTT 59.008 34.615 17.36 0.00 37.70 2.17
1853 1951 6.327365 AGGGATTTGAAGTTCAAGGTTTGATT 59.673 34.615 17.36 0.00 37.70 2.57
1854 1952 5.840693 AGGGATTTGAAGTTCAAGGTTTGAT 59.159 36.000 17.36 7.98 37.70 2.57
1855 1953 5.068987 CAGGGATTTGAAGTTCAAGGTTTGA 59.931 40.000 17.36 3.35 37.70 2.69
1856 1954 5.068987 TCAGGGATTTGAAGTTCAAGGTTTG 59.931 40.000 17.36 13.24 37.70 2.93
1857 1955 5.208121 TCAGGGATTTGAAGTTCAAGGTTT 58.792 37.500 17.36 5.47 37.70 3.27
1858 1956 4.803452 TCAGGGATTTGAAGTTCAAGGTT 58.197 39.130 17.36 7.75 37.70 3.50
1859 1957 4.453480 TCAGGGATTTGAAGTTCAAGGT 57.547 40.909 17.36 11.07 37.70 3.50
1860 1958 5.789643 TTTCAGGGATTTGAAGTTCAAGG 57.210 39.130 17.36 5.95 37.70 3.61
1861 1959 6.647895 CCAATTTCAGGGATTTGAAGTTCAAG 59.352 38.462 17.36 6.22 37.70 3.02
1862 1960 6.523840 CCAATTTCAGGGATTTGAAGTTCAA 58.476 36.000 14.35 14.35 38.25 2.69
1863 1961 5.511202 GCCAATTTCAGGGATTTGAAGTTCA 60.511 40.000 0.08 0.08 38.25 3.18
1864 1962 4.931601 GCCAATTTCAGGGATTTGAAGTTC 59.068 41.667 0.00 0.00 38.25 3.01
1865 1963 4.347583 TGCCAATTTCAGGGATTTGAAGTT 59.652 37.500 0.00 0.00 38.25 2.66
1866 1964 3.903090 TGCCAATTTCAGGGATTTGAAGT 59.097 39.130 0.00 0.00 38.25 3.01
1867 1965 4.248058 GTGCCAATTTCAGGGATTTGAAG 58.752 43.478 0.00 0.00 38.25 3.02
1868 1966 3.645212 TGTGCCAATTTCAGGGATTTGAA 59.355 39.130 0.00 0.00 35.38 2.69
1869 1967 3.006752 GTGTGCCAATTTCAGGGATTTGA 59.993 43.478 0.00 0.00 0.00 2.69
1870 1968 3.328505 GTGTGCCAATTTCAGGGATTTG 58.671 45.455 0.00 0.00 0.00 2.32
1871 1969 2.302733 GGTGTGCCAATTTCAGGGATTT 59.697 45.455 0.00 0.00 34.09 2.17
1872 1970 1.901833 GGTGTGCCAATTTCAGGGATT 59.098 47.619 0.00 0.00 34.09 3.01
1873 1971 1.560505 GGTGTGCCAATTTCAGGGAT 58.439 50.000 0.00 0.00 34.09 3.85
1874 1972 0.893270 CGGTGTGCCAATTTCAGGGA 60.893 55.000 0.00 0.00 34.09 4.20
1875 1973 0.893270 TCGGTGTGCCAATTTCAGGG 60.893 55.000 0.00 0.00 34.09 4.45
1876 1974 0.958091 TTCGGTGTGCCAATTTCAGG 59.042 50.000 0.00 0.00 34.09 3.86
1877 1975 1.608590 AGTTCGGTGTGCCAATTTCAG 59.391 47.619 0.00 0.00 34.09 3.02
1878 1976 1.686355 AGTTCGGTGTGCCAATTTCA 58.314 45.000 0.00 0.00 34.09 2.69
1879 1977 2.793278 AAGTTCGGTGTGCCAATTTC 57.207 45.000 0.00 0.00 34.09 2.17
1880 1978 2.693074 AGAAAGTTCGGTGTGCCAATTT 59.307 40.909 0.00 0.00 34.09 1.82
1881 1979 2.306847 AGAAAGTTCGGTGTGCCAATT 58.693 42.857 0.00 0.00 34.09 2.32
1882 1980 1.981256 AGAAAGTTCGGTGTGCCAAT 58.019 45.000 0.00 0.00 34.09 3.16
1883 1981 2.623878 TAGAAAGTTCGGTGTGCCAA 57.376 45.000 0.00 0.00 34.09 4.52
1884 1982 2.623878 TTAGAAAGTTCGGTGTGCCA 57.376 45.000 0.00 0.00 34.09 4.92
1885 1983 2.418976 GGATTAGAAAGTTCGGTGTGCC 59.581 50.000 0.00 0.00 0.00 5.01
1886 1984 3.335579 AGGATTAGAAAGTTCGGTGTGC 58.664 45.455 0.00 0.00 0.00 4.57
1887 1985 5.721232 ACTAGGATTAGAAAGTTCGGTGTG 58.279 41.667 0.00 0.00 0.00 3.82
1888 1986 5.715753 AGACTAGGATTAGAAAGTTCGGTGT 59.284 40.000 0.00 0.00 0.00 4.16
1889 1987 6.210287 AGACTAGGATTAGAAAGTTCGGTG 57.790 41.667 0.00 0.00 0.00 4.94
1890 1988 8.536340 AATAGACTAGGATTAGAAAGTTCGGT 57.464 34.615 0.00 0.00 0.00 4.69
1891 1989 9.819267 AAAATAGACTAGGATTAGAAAGTTCGG 57.181 33.333 0.00 0.00 0.00 4.30
1902 2000 7.560262 GCCCAAGGTTTAAAATAGACTAGGATT 59.440 37.037 0.00 0.00 0.00 3.01
1903 2001 7.061054 GCCCAAGGTTTAAAATAGACTAGGAT 58.939 38.462 0.00 0.00 0.00 3.24
1904 2002 6.216868 AGCCCAAGGTTTAAAATAGACTAGGA 59.783 38.462 0.00 0.00 0.00 2.94
1905 2003 6.318900 CAGCCCAAGGTTTAAAATAGACTAGG 59.681 42.308 0.00 0.00 0.00 3.02
1906 2004 6.318900 CCAGCCCAAGGTTTAAAATAGACTAG 59.681 42.308 0.00 0.00 0.00 2.57
1907 2005 6.184789 CCAGCCCAAGGTTTAAAATAGACTA 58.815 40.000 0.00 0.00 0.00 2.59
1908 2006 5.016831 CCAGCCCAAGGTTTAAAATAGACT 58.983 41.667 0.00 0.00 0.00 3.24
1909 2007 4.770531 ACCAGCCCAAGGTTTAAAATAGAC 59.229 41.667 0.00 0.00 35.33 2.59
1910 2008 5.005628 ACCAGCCCAAGGTTTAAAATAGA 57.994 39.130 0.00 0.00 35.33 1.98
1911 2009 5.738619 AACCAGCCCAAGGTTTAAAATAG 57.261 39.130 0.00 0.00 46.85 1.73
1920 2018 0.112412 ATCGAAAACCAGCCCAAGGT 59.888 50.000 0.00 0.00 42.34 3.50
1921 2019 0.527565 CATCGAAAACCAGCCCAAGG 59.472 55.000 0.00 0.00 0.00 3.61
1922 2020 0.527565 CCATCGAAAACCAGCCCAAG 59.472 55.000 0.00 0.00 0.00 3.61
1923 2021 0.897863 CCCATCGAAAACCAGCCCAA 60.898 55.000 0.00 0.00 0.00 4.12
1924 2022 1.304052 CCCATCGAAAACCAGCCCA 60.304 57.895 0.00 0.00 0.00 5.36
1925 2023 0.395724 ATCCCATCGAAAACCAGCCC 60.396 55.000 0.00 0.00 0.00 5.19
1926 2024 1.474330 AATCCCATCGAAAACCAGCC 58.526 50.000 0.00 0.00 0.00 4.85
1927 2025 3.592898 AAAATCCCATCGAAAACCAGC 57.407 42.857 0.00 0.00 0.00 4.85
1928 2026 4.083003 TCGAAAAATCCCATCGAAAACCAG 60.083 41.667 0.00 0.00 42.07 4.00
1929 2027 3.821600 TCGAAAAATCCCATCGAAAACCA 59.178 39.130 0.00 0.00 42.07 3.67
1930 2028 4.163552 GTCGAAAAATCCCATCGAAAACC 58.836 43.478 0.00 0.00 45.92 3.27
1931 2029 3.844099 CGTCGAAAAATCCCATCGAAAAC 59.156 43.478 0.00 0.00 45.92 2.43
1932 2030 3.120130 CCGTCGAAAAATCCCATCGAAAA 60.120 43.478 0.00 0.00 45.92 2.29
1933 2031 2.417239 CCGTCGAAAAATCCCATCGAAA 59.583 45.455 0.00 0.00 45.92 3.46
1934 2032 2.004017 CCGTCGAAAAATCCCATCGAA 58.996 47.619 0.00 0.00 45.92 3.71
1935 2033 1.647346 CCGTCGAAAAATCCCATCGA 58.353 50.000 0.00 0.00 42.71 3.59
1936 2034 0.655733 CCCGTCGAAAAATCCCATCG 59.344 55.000 0.00 0.00 37.90 3.84
1937 2035 1.021968 CCCCGTCGAAAAATCCCATC 58.978 55.000 0.00 0.00 0.00 3.51
1938 2036 0.395173 CCCCCGTCGAAAAATCCCAT 60.395 55.000 0.00 0.00 0.00 4.00
1939 2037 1.001887 CCCCCGTCGAAAAATCCCA 60.002 57.895 0.00 0.00 0.00 4.37
1940 2038 2.412323 GCCCCCGTCGAAAAATCCC 61.412 63.158 0.00 0.00 0.00 3.85
1941 2039 1.654023 CTGCCCCCGTCGAAAAATCC 61.654 60.000 0.00 0.00 0.00 3.01
1942 2040 1.800681 CTGCCCCCGTCGAAAAATC 59.199 57.895 0.00 0.00 0.00 2.17
1943 2041 2.340328 GCTGCCCCCGTCGAAAAAT 61.340 57.895 0.00 0.00 0.00 1.82
1944 2042 2.981350 GCTGCCCCCGTCGAAAAA 60.981 61.111 0.00 0.00 0.00 1.94
1945 2043 4.257654 TGCTGCCCCCGTCGAAAA 62.258 61.111 0.00 0.00 0.00 2.29
1946 2044 4.697756 CTGCTGCCCCCGTCGAAA 62.698 66.667 0.00 0.00 0.00 3.46
1958 2056 3.335356 ATCCCGGCTCAACCTGCTG 62.335 63.158 0.00 0.00 35.61 4.41
1959 2057 3.011517 ATCCCGGCTCAACCTGCT 61.012 61.111 0.00 0.00 35.61 4.24
1960 2058 2.514824 GATCCCGGCTCAACCTGC 60.515 66.667 0.00 0.00 35.61 4.85
1961 2059 0.107017 AATGATCCCGGCTCAACCTG 60.107 55.000 8.78 0.00 35.61 4.00
1962 2060 0.107017 CAATGATCCCGGCTCAACCT 60.107 55.000 8.78 0.00 35.61 3.50
1963 2061 1.103398 CCAATGATCCCGGCTCAACC 61.103 60.000 8.78 0.00 0.00 3.77
1964 2062 0.394352 ACCAATGATCCCGGCTCAAC 60.394 55.000 8.78 0.00 0.00 3.18
1965 2063 0.394216 CACCAATGATCCCGGCTCAA 60.394 55.000 8.78 0.00 0.00 3.02
1966 2064 1.224315 CACCAATGATCCCGGCTCA 59.776 57.895 7.33 7.33 0.00 4.26
1967 2065 0.815615 GTCACCAATGATCCCGGCTC 60.816 60.000 0.00 0.00 37.14 4.70
1968 2066 1.224592 GTCACCAATGATCCCGGCT 59.775 57.895 0.00 0.00 37.14 5.52
1969 2067 1.097547 CAGTCACCAATGATCCCGGC 61.098 60.000 0.00 0.00 37.14 6.13
1970 2068 0.464373 CCAGTCACCAATGATCCCGG 60.464 60.000 0.00 0.00 37.14 5.73
1971 2069 0.464373 CCCAGTCACCAATGATCCCG 60.464 60.000 0.00 0.00 37.14 5.14
1972 2070 0.753111 GCCCAGTCACCAATGATCCC 60.753 60.000 0.00 0.00 37.14 3.85
1973 2071 0.753111 GGCCCAGTCACCAATGATCC 60.753 60.000 0.00 0.00 37.14 3.36
1974 2072 1.097547 CGGCCCAGTCACCAATGATC 61.098 60.000 0.00 0.00 37.14 2.92
1975 2073 1.077501 CGGCCCAGTCACCAATGAT 60.078 57.895 0.00 0.00 37.14 2.45
1976 2074 2.350895 CGGCCCAGTCACCAATGA 59.649 61.111 0.00 0.00 0.00 2.57
1977 2075 2.751436 CCGGCCCAGTCACCAATG 60.751 66.667 0.00 0.00 0.00 2.82
1978 2076 4.740822 GCCGGCCCAGTCACCAAT 62.741 66.667 18.11 0.00 0.00 3.16
2005 2103 4.033019 GTCAAAGGAAAAACACGCTACAC 58.967 43.478 0.00 0.00 0.00 2.90
2006 2104 3.942748 AGTCAAAGGAAAAACACGCTACA 59.057 39.130 0.00 0.00 0.00 2.74
2007 2105 4.547406 AGTCAAAGGAAAAACACGCTAC 57.453 40.909 0.00 0.00 0.00 3.58
2008 2106 6.050432 TCTAAGTCAAAGGAAAAACACGCTA 58.950 36.000 0.00 0.00 0.00 4.26
2009 2107 4.879545 TCTAAGTCAAAGGAAAAACACGCT 59.120 37.500 0.00 0.00 0.00 5.07
2010 2108 5.164606 TCTAAGTCAAAGGAAAAACACGC 57.835 39.130 0.00 0.00 0.00 5.34
2011 2109 8.628882 ATTTTCTAAGTCAAAGGAAAAACACG 57.371 30.769 0.00 0.00 39.82 4.49
2014 2112 9.472361 GGGTATTTTCTAAGTCAAAGGAAAAAC 57.528 33.333 0.00 0.00 39.82 2.43
2015 2113 8.354426 CGGGTATTTTCTAAGTCAAAGGAAAAA 58.646 33.333 0.00 0.00 39.82 1.94
2016 2114 7.503230 ACGGGTATTTTCTAAGTCAAAGGAAAA 59.497 33.333 0.00 0.00 40.38 2.29
2017 2115 6.999871 ACGGGTATTTTCTAAGTCAAAGGAAA 59.000 34.615 0.00 0.00 0.00 3.13
2018 2116 6.536447 ACGGGTATTTTCTAAGTCAAAGGAA 58.464 36.000 0.00 0.00 0.00 3.36
2019 2117 6.117975 ACGGGTATTTTCTAAGTCAAAGGA 57.882 37.500 0.00 0.00 0.00 3.36
2020 2118 5.935789 TGACGGGTATTTTCTAAGTCAAAGG 59.064 40.000 0.00 0.00 34.71 3.11
2021 2119 7.429636 TTGACGGGTATTTTCTAAGTCAAAG 57.570 36.000 5.76 0.00 41.98 2.77
2023 2121 7.804843 TTTTGACGGGTATTTTCTAAGTCAA 57.195 32.000 4.30 4.30 42.83 3.18
2024 2122 7.804843 TTTTTGACGGGTATTTTCTAAGTCA 57.195 32.000 0.00 0.00 35.66 3.41
2056 2154 2.158813 TCCCGCTGAGTCTTGTCTTTTT 60.159 45.455 0.00 0.00 0.00 1.94
2057 2155 1.416401 TCCCGCTGAGTCTTGTCTTTT 59.584 47.619 0.00 0.00 0.00 2.27
2058 2156 1.048601 TCCCGCTGAGTCTTGTCTTT 58.951 50.000 0.00 0.00 0.00 2.52
2059 2157 1.048601 TTCCCGCTGAGTCTTGTCTT 58.951 50.000 0.00 0.00 0.00 3.01
2060 2158 1.205893 GATTCCCGCTGAGTCTTGTCT 59.794 52.381 0.00 0.00 0.00 3.41
2061 2159 1.646189 GATTCCCGCTGAGTCTTGTC 58.354 55.000 0.00 0.00 0.00 3.18
2062 2160 0.108615 CGATTCCCGCTGAGTCTTGT 60.109 55.000 0.00 0.00 0.00 3.16
2063 2161 0.173481 TCGATTCCCGCTGAGTCTTG 59.827 55.000 0.00 0.00 38.37 3.02
2064 2162 0.895530 TTCGATTCCCGCTGAGTCTT 59.104 50.000 0.00 0.00 38.37 3.01
2065 2163 0.173708 GTTCGATTCCCGCTGAGTCT 59.826 55.000 0.00 0.00 38.37 3.24
2066 2164 0.173708 AGTTCGATTCCCGCTGAGTC 59.826 55.000 0.00 0.00 38.37 3.36
2067 2165 0.608640 AAGTTCGATTCCCGCTGAGT 59.391 50.000 0.00 0.00 38.37 3.41
2068 2166 1.002366 CAAGTTCGATTCCCGCTGAG 58.998 55.000 0.00 0.00 38.37 3.35
2069 2167 0.606096 TCAAGTTCGATTCCCGCTGA 59.394 50.000 0.00 0.00 38.37 4.26
2070 2168 1.002366 CTCAAGTTCGATTCCCGCTG 58.998 55.000 0.00 0.00 38.37 5.18
2071 2169 0.895530 TCTCAAGTTCGATTCCCGCT 59.104 50.000 0.00 0.00 38.37 5.52
2072 2170 1.861575 GATCTCAAGTTCGATTCCCGC 59.138 52.381 0.00 0.00 38.37 6.13
2073 2171 3.119291 CAGATCTCAAGTTCGATTCCCG 58.881 50.000 0.00 0.00 40.25 5.14
2074 2172 4.116238 GTCAGATCTCAAGTTCGATTCCC 58.884 47.826 0.00 0.00 0.00 3.97
2075 2173 3.794028 CGTCAGATCTCAAGTTCGATTCC 59.206 47.826 0.00 0.00 0.00 3.01
2076 2174 3.241784 GCGTCAGATCTCAAGTTCGATTC 59.758 47.826 0.00 0.00 0.00 2.52
2077 2175 3.119316 AGCGTCAGATCTCAAGTTCGATT 60.119 43.478 0.00 0.00 0.00 3.34
2078 2176 2.425312 AGCGTCAGATCTCAAGTTCGAT 59.575 45.455 0.00 0.00 0.00 3.59
2079 2177 1.813178 AGCGTCAGATCTCAAGTTCGA 59.187 47.619 0.00 0.00 0.00 3.71
2080 2178 1.916651 CAGCGTCAGATCTCAAGTTCG 59.083 52.381 0.00 0.00 0.00 3.95
2081 2179 1.658095 GCAGCGTCAGATCTCAAGTTC 59.342 52.381 0.00 0.00 0.00 3.01
2082 2180 1.001293 TGCAGCGTCAGATCTCAAGTT 59.999 47.619 0.00 0.00 0.00 2.66
2083 2181 0.605083 TGCAGCGTCAGATCTCAAGT 59.395 50.000 0.00 0.00 0.00 3.16
2084 2182 1.718396 TTGCAGCGTCAGATCTCAAG 58.282 50.000 0.00 0.00 0.00 3.02
2085 2183 2.168326 TTTGCAGCGTCAGATCTCAA 57.832 45.000 0.00 0.00 0.00 3.02
2086 2184 1.800586 GTTTTGCAGCGTCAGATCTCA 59.199 47.619 0.00 0.00 0.00 3.27
2087 2185 2.072298 AGTTTTGCAGCGTCAGATCTC 58.928 47.619 0.00 0.00 0.00 2.75
2088 2186 2.175878 AGTTTTGCAGCGTCAGATCT 57.824 45.000 0.00 0.00 0.00 2.75
2089 2187 2.578495 CAAGTTTTGCAGCGTCAGATC 58.422 47.619 0.00 0.00 0.00 2.75
2090 2188 1.267806 CCAAGTTTTGCAGCGTCAGAT 59.732 47.619 0.00 0.00 0.00 2.90
2091 2189 0.662619 CCAAGTTTTGCAGCGTCAGA 59.337 50.000 0.00 0.00 0.00 3.27
2092 2190 0.381801 ACCAAGTTTTGCAGCGTCAG 59.618 50.000 0.00 0.00 0.00 3.51
2093 2191 1.332375 GTACCAAGTTTTGCAGCGTCA 59.668 47.619 0.00 0.00 0.00 4.35
2094 2192 1.332375 TGTACCAAGTTTTGCAGCGTC 59.668 47.619 0.00 0.00 0.00 5.19
2095 2193 1.384525 TGTACCAAGTTTTGCAGCGT 58.615 45.000 0.00 0.00 0.00 5.07
2096 2194 2.483583 TTGTACCAAGTTTTGCAGCG 57.516 45.000 0.00 0.00 0.00 5.18
2097 2195 3.551485 CACTTTGTACCAAGTTTTGCAGC 59.449 43.478 9.52 0.00 0.00 5.25
2098 2196 4.992688 TCACTTTGTACCAAGTTTTGCAG 58.007 39.130 9.52 0.00 0.00 4.41
2099 2197 5.392767 TTCACTTTGTACCAAGTTTTGCA 57.607 34.783 9.52 0.00 0.00 4.08
2100 2198 6.039616 TGATTCACTTTGTACCAAGTTTTGC 58.960 36.000 9.52 2.12 0.00 3.68
2101 2199 7.759433 ACTTGATTCACTTTGTACCAAGTTTTG 59.241 33.333 9.52 0.26 39.46 2.44
2102 2200 7.836842 ACTTGATTCACTTTGTACCAAGTTTT 58.163 30.769 9.52 0.00 39.46 2.43
2103 2201 7.404671 ACTTGATTCACTTTGTACCAAGTTT 57.595 32.000 9.52 0.00 39.46 2.66
2104 2202 8.514330 TTACTTGATTCACTTTGTACCAAGTT 57.486 30.769 9.52 0.00 41.67 2.66
2105 2203 8.514330 TTTACTTGATTCACTTTGTACCAAGT 57.486 30.769 6.52 6.52 43.24 3.16
2136 2234 7.702772 CGAATCACAATGCTAAGTAGACTAGTT 59.297 37.037 7.68 7.68 0.00 2.24
2137 2235 7.067129 TCGAATCACAATGCTAAGTAGACTAGT 59.933 37.037 0.00 0.00 0.00 2.57
2138 2236 7.418408 TCGAATCACAATGCTAAGTAGACTAG 58.582 38.462 0.00 0.00 0.00 2.57
2139 2237 7.329588 TCGAATCACAATGCTAAGTAGACTA 57.670 36.000 0.00 0.00 0.00 2.59
2140 2238 6.208988 TCGAATCACAATGCTAAGTAGACT 57.791 37.500 0.00 0.00 0.00 3.24
2141 2239 6.887376 TTCGAATCACAATGCTAAGTAGAC 57.113 37.500 0.00 0.00 0.00 2.59
2142 2240 7.386573 TGTTTTCGAATCACAATGCTAAGTAGA 59.613 33.333 0.00 0.00 0.00 2.59
2143 2241 7.518161 TGTTTTCGAATCACAATGCTAAGTAG 58.482 34.615 0.00 0.00 0.00 2.57
2144 2242 7.428282 TGTTTTCGAATCACAATGCTAAGTA 57.572 32.000 0.00 0.00 0.00 2.24
2145 2243 6.312399 TGTTTTCGAATCACAATGCTAAGT 57.688 33.333 0.00 0.00 0.00 2.24
2146 2244 7.801547 ATTGTTTTCGAATCACAATGCTAAG 57.198 32.000 24.77 0.00 39.22 2.18
2147 2245 7.060518 CGAATTGTTTTCGAATCACAATGCTAA 59.939 33.333 25.53 8.03 43.97 3.09
2148 2246 6.522855 CGAATTGTTTTCGAATCACAATGCTA 59.477 34.615 25.53 8.57 43.97 3.49
2149 2247 5.343058 CGAATTGTTTTCGAATCACAATGCT 59.657 36.000 25.53 16.59 43.97 3.79
2150 2248 5.443170 CCGAATTGTTTTCGAATCACAATGC 60.443 40.000 25.53 23.54 43.97 3.56
2151 2249 5.855925 TCCGAATTGTTTTCGAATCACAATG 59.144 36.000 25.53 17.89 43.97 2.82
2152 2250 6.007936 TCCGAATTGTTTTCGAATCACAAT 57.992 33.333 21.90 21.90 43.97 2.71
2153 2251 5.425577 TCCGAATTGTTTTCGAATCACAA 57.574 34.783 19.97 19.97 43.97 3.33
2154 2252 5.425577 TTCCGAATTGTTTTCGAATCACA 57.574 34.783 9.14 2.35 43.97 3.58
2155 2253 8.614994 AATATTCCGAATTGTTTTCGAATCAC 57.385 30.769 9.14 0.00 43.97 3.06
2156 2254 9.632807 AAAATATTCCGAATTGTTTTCGAATCA 57.367 25.926 9.14 0.00 43.97 2.57
2187 2285 9.405587 GGATTTCAAAATCGTTGATTACTTTCA 57.594 29.630 8.87 0.00 44.43 2.69
2188 2286 8.575454 CGGATTTCAAAATCGTTGATTACTTTC 58.425 33.333 8.87 0.00 44.43 2.62
2189 2287 8.293867 TCGGATTTCAAAATCGTTGATTACTTT 58.706 29.630 8.87 0.00 44.43 2.66
2190 2288 7.812648 TCGGATTTCAAAATCGTTGATTACTT 58.187 30.769 8.87 0.00 44.43 2.24
2191 2289 7.372451 TCGGATTTCAAAATCGTTGATTACT 57.628 32.000 8.87 0.00 44.43 2.24
2192 2290 8.614994 ATTCGGATTTCAAAATCGTTGATTAC 57.385 30.769 8.87 0.00 44.43 1.89
2195 2293 9.878599 GTATATTCGGATTTCAAAATCGTTGAT 57.121 29.630 8.87 4.40 44.43 2.57
2196 2294 9.104965 AGTATATTCGGATTTCAAAATCGTTGA 57.895 29.630 8.87 5.03 44.43 3.18
2197 2295 9.716507 AAGTATATTCGGATTTCAAAATCGTTG 57.283 29.630 8.87 3.14 44.43 4.10
2205 2303 9.878667 TCACTGTTAAGTATATTCGGATTTCAA 57.121 29.630 0.00 0.00 33.79 2.69
2206 2304 9.878667 TTCACTGTTAAGTATATTCGGATTTCA 57.121 29.630 0.00 0.00 33.79 2.69
2211 2309 9.878667 TGATTTTCACTGTTAAGTATATTCGGA 57.121 29.630 0.00 0.00 33.79 4.55
2225 2323 9.325198 GGAATTTTAAAACCTGATTTTCACTGT 57.675 29.630 1.97 0.00 40.99 3.55
2226 2324 9.323985 TGGAATTTTAAAACCTGATTTTCACTG 57.676 29.630 1.97 0.00 40.99 3.66
2227 2325 9.898152 TTGGAATTTTAAAACCTGATTTTCACT 57.102 25.926 1.97 0.00 40.99 3.41
2233 2331 9.625747 ACATGTTTGGAATTTTAAAACCTGATT 57.374 25.926 1.97 0.00 34.81 2.57
2234 2332 9.625747 AACATGTTTGGAATTTTAAAACCTGAT 57.374 25.926 4.92 7.92 34.81 2.90
2235 2333 9.454859 AAACATGTTTGGAATTTTAAAACCTGA 57.545 25.926 22.71 0.00 34.81 3.86
2267 2365 9.757227 TCGTAATTCCAAAAATTCTTCACATTT 57.243 25.926 0.00 0.00 0.00 2.32
2268 2366 9.927668 ATCGTAATTCCAAAAATTCTTCACATT 57.072 25.926 0.00 0.00 0.00 2.71
2269 2367 9.927668 AATCGTAATTCCAAAAATTCTTCACAT 57.072 25.926 0.00 0.00 0.00 3.21
2270 2368 9.757227 AAATCGTAATTCCAAAAATTCTTCACA 57.243 25.926 0.00 0.00 0.00 3.58
2281 2379 9.887406 GTGTTAGAAAGAAATCGTAATTCCAAA 57.113 29.630 0.00 0.00 0.00 3.28
2282 2380 9.058174 TGTGTTAGAAAGAAATCGTAATTCCAA 57.942 29.630 0.00 0.00 0.00 3.53
2283 2381 8.610248 TGTGTTAGAAAGAAATCGTAATTCCA 57.390 30.769 0.00 0.00 0.00 3.53
2284 2382 9.887406 TTTGTGTTAGAAAGAAATCGTAATTCC 57.113 29.630 0.00 0.00 0.00 3.01
2290 2388 9.581099 AATTTGTTTGTGTTAGAAAGAAATCGT 57.419 25.926 6.90 0.00 36.05 3.73
2298 2396 9.798885 CGTTTGAAAATTTGTTTGTGTTAGAAA 57.201 25.926 0.00 0.00 0.00 2.52
2299 2397 8.979574 ACGTTTGAAAATTTGTTTGTGTTAGAA 58.020 25.926 0.00 0.00 0.00 2.10
2300 2398 8.428536 CACGTTTGAAAATTTGTTTGTGTTAGA 58.571 29.630 0.00 0.00 0.00 2.10
2301 2399 8.428536 TCACGTTTGAAAATTTGTTTGTGTTAG 58.571 29.630 0.00 0.00 0.00 2.34
2302 2400 8.294341 TCACGTTTGAAAATTTGTTTGTGTTA 57.706 26.923 0.00 0.00 0.00 2.41
2303 2401 7.178712 TCACGTTTGAAAATTTGTTTGTGTT 57.821 28.000 0.00 0.00 0.00 3.32
2304 2402 6.771188 TCACGTTTGAAAATTTGTTTGTGT 57.229 29.167 0.00 0.00 0.00 3.72
2305 2403 6.518054 GGTTCACGTTTGAAAATTTGTTTGTG 59.482 34.615 0.00 0.00 43.52 3.33
2306 2404 6.202954 TGGTTCACGTTTGAAAATTTGTTTGT 59.797 30.769 0.00 0.00 43.52 2.83
2307 2405 6.593978 TGGTTCACGTTTGAAAATTTGTTTG 58.406 32.000 0.00 0.00 43.52 2.93
2308 2406 6.787085 TGGTTCACGTTTGAAAATTTGTTT 57.213 29.167 0.00 0.00 43.52 2.83
2309 2407 6.976636 ATGGTTCACGTTTGAAAATTTGTT 57.023 29.167 0.00 0.00 43.52 2.83
2310 2408 6.976636 AATGGTTCACGTTTGAAAATTTGT 57.023 29.167 0.00 0.00 43.52 2.83
2311 2409 8.573801 CAAAAATGGTTCACGTTTGAAAATTTG 58.426 29.630 0.00 3.17 43.52 2.32
2312 2410 8.507249 TCAAAAATGGTTCACGTTTGAAAATTT 58.493 25.926 0.00 0.00 43.52 1.82
2313 2411 8.034058 TCAAAAATGGTTCACGTTTGAAAATT 57.966 26.923 0.00 0.00 43.52 1.82
2314 2412 7.602517 TCAAAAATGGTTCACGTTTGAAAAT 57.397 28.000 0.00 0.00 43.52 1.82
2315 2413 7.421530 TTCAAAAATGGTTCACGTTTGAAAA 57.578 28.000 13.49 0.00 43.52 2.29
2317 2415 7.201565 GGATTTCAAAAATGGTTCACGTTTGAA 60.202 33.333 12.54 12.54 43.05 2.69
2318 2416 6.256757 GGATTTCAAAAATGGTTCACGTTTGA 59.743 34.615 0.00 0.00 38.29 2.69
2319 2417 6.418141 GGATTTCAAAAATGGTTCACGTTTG 58.582 36.000 0.00 0.00 38.29 2.93
2320 2418 5.525745 GGGATTTCAAAAATGGTTCACGTTT 59.474 36.000 0.00 0.00 39.94 3.60
2321 2419 5.053811 GGGATTTCAAAAATGGTTCACGTT 58.946 37.500 0.00 0.00 0.00 3.99
2322 2420 4.343814 AGGGATTTCAAAAATGGTTCACGT 59.656 37.500 0.00 0.00 0.00 4.49
2323 2421 4.685628 CAGGGATTTCAAAAATGGTTCACG 59.314 41.667 0.00 0.00 0.00 4.35
2324 2422 5.852827 TCAGGGATTTCAAAAATGGTTCAC 58.147 37.500 0.00 0.00 0.00 3.18
2325 2423 6.491714 TTCAGGGATTTCAAAAATGGTTCA 57.508 33.333 0.00 0.00 0.00 3.18
2326 2424 9.671279 AATATTCAGGGATTTCAAAAATGGTTC 57.329 29.630 0.00 0.00 0.00 3.62
2375 2473 9.404348 GGTGTTTTGAAAATTTTGTTCATGTTT 57.596 25.926 8.47 0.00 35.03 2.83
2376 2474 8.571336 TGGTGTTTTGAAAATTTTGTTCATGTT 58.429 25.926 8.47 0.00 35.03 2.71
2377 2475 8.103948 TGGTGTTTTGAAAATTTTGTTCATGT 57.896 26.923 8.47 0.00 35.03 3.21
2378 2476 8.848528 GTTGGTGTTTTGAAAATTTTGTTCATG 58.151 29.630 8.47 0.00 35.03 3.07
2379 2477 8.571336 TGTTGGTGTTTTGAAAATTTTGTTCAT 58.429 25.926 8.47 0.00 35.03 2.57
2380 2478 7.930217 TGTTGGTGTTTTGAAAATTTTGTTCA 58.070 26.923 8.47 0.00 33.21 3.18
2381 2479 8.962857 ATGTTGGTGTTTTGAAAATTTTGTTC 57.037 26.923 8.47 0.00 0.00 3.18
2382 2480 9.755804 AAATGTTGGTGTTTTGAAAATTTTGTT 57.244 22.222 8.47 0.00 0.00 2.83
2383 2481 9.755804 AAAATGTTGGTGTTTTGAAAATTTTGT 57.244 22.222 8.47 0.00 0.00 2.83
2428 2526 9.921637 TGTTTTGAAAAGTTGTTCTCACTTTAT 57.078 25.926 0.00 0.00 33.84 1.40
2429 2527 9.921637 ATGTTTTGAAAAGTTGTTCTCACTTTA 57.078 25.926 0.00 0.00 33.84 1.85
2430 2528 8.711457 CATGTTTTGAAAAGTTGTTCTCACTTT 58.289 29.630 0.00 0.00 35.48 2.66
2431 2529 8.087750 TCATGTTTTGAAAAGTTGTTCTCACTT 58.912 29.630 0.00 0.00 0.00 3.16
2432 2530 7.601856 TCATGTTTTGAAAAGTTGTTCTCACT 58.398 30.769 0.00 0.00 0.00 3.41
2433 2531 7.810766 TCATGTTTTGAAAAGTTGTTCTCAC 57.189 32.000 0.00 0.00 0.00 3.51
2434 2532 8.303156 TCTTCATGTTTTGAAAAGTTGTTCTCA 58.697 29.630 0.00 0.00 43.64 3.27
2435 2533 8.687824 TCTTCATGTTTTGAAAAGTTGTTCTC 57.312 30.769 0.00 0.00 43.64 2.87
2436 2534 9.657419 ATTCTTCATGTTTTGAAAAGTTGTTCT 57.343 25.926 0.00 0.00 43.64 3.01
2466 2564 9.515020 CACTTGTTCAAAGTATGTGTATGTTTT 57.485 29.630 0.00 0.00 0.00 2.43
2467 2565 8.134895 CCACTTGTTCAAAGTATGTGTATGTTT 58.865 33.333 0.00 0.00 0.00 2.83
2468 2566 7.255451 CCCACTTGTTCAAAGTATGTGTATGTT 60.255 37.037 0.00 0.00 0.00 2.71
2469 2567 6.206634 CCCACTTGTTCAAAGTATGTGTATGT 59.793 38.462 0.00 0.00 0.00 2.29
2470 2568 6.429692 TCCCACTTGTTCAAAGTATGTGTATG 59.570 38.462 0.00 0.00 0.00 2.39
2471 2569 6.539173 TCCCACTTGTTCAAAGTATGTGTAT 58.461 36.000 0.00 0.00 0.00 2.29
2472 2570 5.931294 TCCCACTTGTTCAAAGTATGTGTA 58.069 37.500 0.00 0.00 0.00 2.90
2473 2571 4.787551 TCCCACTTGTTCAAAGTATGTGT 58.212 39.130 0.00 0.00 0.00 3.72
2474 2572 5.067153 TGTTCCCACTTGTTCAAAGTATGTG 59.933 40.000 0.00 0.00 0.00 3.21
2475 2573 5.197451 TGTTCCCACTTGTTCAAAGTATGT 58.803 37.500 0.00 0.00 0.00 2.29
2476 2574 5.766150 TGTTCCCACTTGTTCAAAGTATG 57.234 39.130 0.00 0.00 0.00 2.39
2477 2575 6.783708 TTTGTTCCCACTTGTTCAAAGTAT 57.216 33.333 0.00 0.00 0.00 2.12
2478 2576 6.783708 ATTTGTTCCCACTTGTTCAAAGTA 57.216 33.333 0.00 0.00 0.00 2.24
2479 2577 5.675684 ATTTGTTCCCACTTGTTCAAAGT 57.324 34.783 0.00 0.00 0.00 2.66
2480 2578 6.983474 AAATTTGTTCCCACTTGTTCAAAG 57.017 33.333 0.00 0.00 0.00 2.77
2481 2579 7.841956 TCTAAATTTGTTCCCACTTGTTCAAA 58.158 30.769 0.00 0.00 0.00 2.69
2482 2580 7.411486 TCTAAATTTGTTCCCACTTGTTCAA 57.589 32.000 0.00 0.00 0.00 2.69
2483 2581 7.411486 TTCTAAATTTGTTCCCACTTGTTCA 57.589 32.000 0.00 0.00 0.00 3.18
2484 2582 7.223971 GGTTTCTAAATTTGTTCCCACTTGTTC 59.776 37.037 0.00 0.00 0.00 3.18
2485 2583 7.045416 GGTTTCTAAATTTGTTCCCACTTGTT 58.955 34.615 0.00 0.00 0.00 2.83
2486 2584 6.382859 AGGTTTCTAAATTTGTTCCCACTTGT 59.617 34.615 0.00 0.00 0.00 3.16
2487 2585 6.701400 CAGGTTTCTAAATTTGTTCCCACTTG 59.299 38.462 0.00 0.00 0.00 3.16
2488 2586 6.816136 CAGGTTTCTAAATTTGTTCCCACTT 58.184 36.000 0.00 0.00 0.00 3.16
2489 2587 6.405278 CAGGTTTCTAAATTTGTTCCCACT 57.595 37.500 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.