>input_sequence_77804
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----------------ATGGGGAACAGCCTGAGGTGCTGCCTGGCGTGCGTGCTGCCGTGCGGCGCGCTGGACCTGGTCC
GGATCGTGCACCTCAGCGGCCGCGTCGACGAGTACGGCCGGGCCGTGCTCGCCGGGGAGGTCCTGGCGGCGCACCCGAAC
CACGTGCTCAGCAGGCCCTGCGGGTCCAGGCAGCAGGGCGGGCCGCGGATCGTCATCATCGTGTCGCCCGAGGCCGAGCT
GGAGCGCGGCGAGATCTACTTCCTCCTCCCGGCCGCCTCCGTGCCCGCCGACGCCAAGAAGAAGACAAAGACCAAGCGCG
AGCCGAGTCCCGGCGCC---GCCGCCGAGGAGGGCCCTCGGCACCATCGCCACCATCGGCTCCACGTCCGCAGCAAGTCG
GAAGGCAGCGCGGCCACGGCCGCCGTCGAAGGTCGCCAGCAGCAGCAGCAGCAGCA------CCGGAGGCGCATGAGCAC
CGGCAGCCACGCCACGTCGTGGCACCCGCACCTGGCGCGCATCGCCGAGGACCCCTGA----------------------
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>chr3A_1_TraesCS3A01G098800
ACGAGGCATGCAACCTTCTTTTCGCTTTATTTTCGGTCAATA-TTATTCGGCTACTGGATTTTGCATTCTTAATAATATA
TGATCGTGCGCGTCATCCTGATGCAGAGAGCGGGGTTATCCTCCTTTTT--AGAAAATAAATAATCAAAACCACACTAAA
AAGCATGTACTCCTATGGCTGTTGTACACGTGGCTCTCTCTGGTTGGGTAGGTCTTGCACGTATGCGCACCAAAAGCATT
TCCCGCCAGCTTCCTCGTGAGAAAGGCGTTGCACGTACGCACGGCCGGACTCGGTAGCTACGCGAAGAAACCATTGGGCG
ATCGATCCACCAGACGAACAATCATCAAGCAAAGCATGCCGAATAATGAATCGATCATTGTTCCCAACAAAACCCCCCAT
ATCCAATTGTGGATTCACACTGGCTTGCAGGCAGCACTCATGAGACGAGCGCATACAACCAAGCGGTACAGCAAGGCAGC
ATGGCTGTACGTGCGCGTCAGTGTGCTGTGCCATTATTGTGCCCCTCAAC-----GGATCGATCCATCGGTCGACCGAGG
AGAAAAA-TATATATAAATA---AA--------------------------------AAGGCAACTGATTTCTAGCTGAG
AAAAAAATTATGATGGAACATGGCCATGGGGCTAGCTAACTAGCTCCTTCCTTGTGCACTGATTAGTGTTGGATGCGTAA
GCGTGAGCATTAGTACTCGGTCGTTAAGGATCTAGATGTACATAAGGCCGGCCAGGACGACAAG--------CACACACA
CATGCATGAGTGATGCTGATCATCAGTGGCCCTCGCTAGATTTAATACTGCTGGCACCTCTCTCACCAAACTGTGACCAT
TATTCTTCTTGGCCTCCTCGTCGATCCTATCT--CCTCTTTATATGCGTCTCCGGTCGTCACATCACGCCACCATAGAAG
AGAGAGATAGTATCCACACAGAGAAGAGCGAAAGGGAG--AGGAAGGTGGCTAGGCGCCTAGCTAGCTACGCGGGCAGCA
ACCCTGAGCTGATCGAATGGGGAACAGCCTGAGGTGCTGCCTGGCGTGCGTGCTGCCGTGCGGCGCGCTGGACCTGGTCC
GGATCGTGCACCTCAGCGGCCGCGTCGACGAGTACGGCCGGGCCGTGCTCGCCGGGGAGGTCCTGGCGGCGCACCCGAAC
CACGTGCTCAGCAGGCCCTGCGGGTCCAGGCAGCAGGGCGGGCCGCGGATCGTCATCATCGTGTCGCCCGAGGCCGAGCT
GGAGCGCGGCGAGATCTACTTCCTCCTCCCGGCCGCCTCCGTGCCCGCCGACGCCAAGAAGAAGACAAAGACCAAGCGCG
AGCCGAGTCCCGGCGCC---GCCGCCGAGGAGGGCCCTCGGCACCATCGCCACCATCGGCTCCACGTCCGCAGCAAGTCG
GAAGGCAGCGCGGCCACGGCCGCCGTCGAAGGTCGCCAGCAGCAGCAGCAGCAGCA------CCGGAGGCGCATGAGCAC
CGGCAGCCACGCCACGTCGTGGCACCCGCACCTGGCGCGCATCGCCGAGGACCCCTGATCGAGCGCTGGCTCCCGGTCGT
GCCGGTATTGTCCTTTCTGCATGGATGGTCTCGTTTTCCTGTCTGATCGCGTGGTAAATATTCTTGTTGCATGTCTCACA
TTTATTACTGTCTT-GTTAAGCTACCCCCAAGTGTACATTGGATTCAAGCGTCGCGTGTGTAAACAGAACAATGCTGTGA
CCGTGGCATATGTTTTTCTTTGAGTTTTGAACTTCGTGATTT-------------------------------GTGCCTT
GTGACACTTCTGTTGTAAATACAAAAGGAGCTGTCAATTTTGGTCTCTCCTAATGCCGTTTTTTTAAGGGAAAAGTCCAA
AACAGACCTTCAACTTGTAGATGAAAGCTAAATCAAACCTTGAACTTCAAATCCCTGAAATTGGCACACCGAACTTTCTA
ATCCTAGTCTATTTTAAACCTTGGGCTGGTTTTCGATGGGATTTTTCGACGGGGGCAGCAGGTTGAGCCGGGATCATTGG
TGACTGGGCCGGCCCACCAAGCGTGTAGCGTGTTTTTCCTTTGACTTAGAAAATACCCGTCAAAAAAATACCAAAAAAGA
CAAGACTCAGCGGGAATCGAACTTGAGATCTGACGCTGCAAAACTTGGTACAAAGTGAATCAAGTAAATATTTAACTAGT
CTACTTAGCATTGTGATTCGAAAACAATTCGGAATATTTTTTCTTGAAAGTAATCAACGATTTTGAAATCCGAATATACT
TAACAGTGAAAATCAGGTTTTAAAATTCCAAACATGTTTTGAAAAAATGTGAAGAATTTTTGGAATTACGATTTCTTTCT
AACACAAACAAATTTTCAAACGTGAACCATTTTTGAAATCCCTGAATATTTTTTATACATGAACCATTTTTTAAACATGA
ACAAAATTTTCAAAACACCAACATTTTTTGAAACCTGAAAAAAAAATAAAGTGAGAACAACTTTTCAAAACATGAAGAAT
TTTAAAACATACACATACTTTGAACAAGTGGGAACAAATTTAGAAACCTG
>chr3D_17
----------------TCTTTTCGCTTTATTTCCAGGTCGAAGTTATTCGGCTATTGAATTTTGCATTCTTAATAATATA
TGACTGTGTGCATCATCTTGATGCACAGGCCGGA-TTATCCTCCTTCCAAAAGAAAAAGAAAAATCAGAACCGCACTAAA
AA-CATGTACTCCAATGACTGTTGTACATGTGGCTTTCTCTGGTTGGGTAGGTCTTGCACGTATGCCCACCAAAAGCATT
TCCCGCTAGCTTCCTCGTGAGAAAGGCGTTGCACGTACGCACGGCCGGACTCGGTAGCTACGTGAAGAAACCATTGGGCG
ATCGATCCACCAGACGAACAATCATCAAGCAAAGCATGCCGAATAATGAATCGATCATCATTCCCAACAAAACCCC-CAT
ATCCAATTGTGGATTCACACTAGCTTGCAGGCAGCACTCATGAGATGAGCGCATACAACCAAGCGGTACAGCAAGGCAGC
ATGGCTGTACGTGCGCATCAGTGTGCTGTGGCATTATTGAGCTTCCCCCCAACGTGGATCGATCCATCGGTCGACCGAGG
AGAAAAA-TATATAAAATCAACTACTCCCTCCGTTCCAAATTACTCGTCGTGAGTAGAAGGCAACTAGTTTCTAGCTTAG
---AAAAAATTCATGGAACATGGCCATGGGGCTAGCTAGCTAGCTCCTTCCTTATGCACTGATTAGTATTGGATGCGTAA
GCGTGAGTATTAGTACTCGGTCGTTAAGGATCTAGATGTACATAAGGCCGGCCAGGACGACAAG--------CACACACA
CATGCATGAGTGATGCTGATCATCAGTGGCCCTCGCTAGATTTAATACTGCTGGCACCTCTCTCACCAAACTGTGACCAT
TATTCTTCTTGGCCTCCTCGTCGATCCTATCT--TCTCTTTATATGCGTCTCCGGTCGTCACATCACGCCACCATAGAAG
AGAGAGATA---TCTACACAGAGAAGAGCGAAAGGGAG--AGGAAGGTGGCTAGGCGCCTAGCTAGCTACGCGGGCAGCA
ACCCTGAGCTGATCGAATGGGGAACAGCCTGAGGTGCTGCCTGGCGTGCGTGCTGCCGTGCGGCGCGCTGGACCTGGTCC
GGATCGTGCACCTCAGCGGCCGCGTCGACGAGTACGGCCGCGCCGTGCTCGCCGGGGAGGTCCTGGCGGCGCACCCGAAC
CACGTGCTCAGCAGGCCCTGCGGGTCCAGGCAGCAGGGCGGGCCGCGGATCGTCATCATCGTGTCGCCCGAGGCCGAGCT
GGAACGCGGCGAGATCTACTTCCTCCTCCCGGCCGCCTCCGTGCCCGCCGACGCCAAGAAGAAGACCAAGACCAAGCGCG
AGCCGAGCCCCGGCGCCGCCGCCGTCGAGGAGGGCCGGCGACACCATCGCCA---------CCACGTCCGGAGCAAGTCG
GAAGGCAGCGCGGCCACGGCCGCCGTCGAAGGTCGCCACCT------GCAGCAGCAGCAGCACCGGAGGCGCATGAGCAC
CGGCAGCCACGCCACGTCGTGGCATCCGCACCTGGCGCGCATCGCCGAGGACCCCTGATCGAGCTCTGGCTCCCGGTCGT
GCCGGTATTGTCCTTTCTGCATGGATGGTCTCGTTTTCCTGTCTGATCGCGTGGTAAATATTCTTGTTGCATGTCTCACA
TTTATTATTGTCTTTGTTAATCTACCCCCAAGTGTACATTGGATTCAAGTGTCGCGTGTGTGAACAGAACAATGCTGTGA
CCGTGGCATATGTTTCTTTTTGAGTTTTGAACTTCGTGATTT-------------------------------GTGCTTT
GTGACACTTCTGTTGTAATTGCAA--------------------------------------------------------
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>chr3B_141
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---------------------------------------------------------------ATCAAAACTGCACTAAG
AA-AATGTACTCCTATGGCTGTTGTACAGGTGGCTCTCTCTGGTTGGGTAGGTCTTGCACGTATGCCCACCAAAAGCATT
TCCCGCTAGCTTCCTCGTGAGAAAGGCGTTGCACGTACGCACGGCCGGAC------GCTACGTGAAGAAACCATTGGGCG
ATGGATCCACCAGACGAACAATCATCAAGCAAAGCATGCCGAATAATGAATCGATCATCATTCCCAACAAAACCCC-CAT
ATCCAATTGTGGATTCACACTAGCTTGCAGGCAGCACTCATGAGATGAGCGCATACAACCAAGCGGTACAGCAAGGCAGC
ATGGCTGTACGTGCGCATCAGTGTGCTGTGCCATTATTGAGCCCCTCAAC-----GGATCGACCGATCGGTCGACCGAGG
AGAAAAAATATATATAATCAAATAA--------------------------------AAGGCAACTAGTTTCTATAGCTT
GGAAAAAAAATCATGGAACATGGCCATGGGGCTAGCTAGCT----CCTTCCTTATGCACTGATTAGTGTTGGATGCGTAA
GCGTGAGTATGAGTACACGATCGTTAAGGATCTAGATTTACATAAGGCCGGCCAGGACGACAAGCGCGCACACACACACA
CATGCATGAGTGATGCTGATCATCAGTGGCCCTCGCTAGATTTAATACTGCTGGCACCTCTCTCACCAAACTGTGACCAT
TATTCTTCTTGGCCTCCTCGTCGATCCTATCTTCTCTCTTTATATGCGTCTCCGGTCGTCACATCACGCCACCAAAGAGA
AGAGAGGTA---TCTACATAGAGAAGAGCGAGAGGGAGAGAGGAAGGTGGCTAGGCGCCTAGCTAGCTACGCGGGCAGCA
ACCCTGAGCTGATCGAATGGGGAACAGCCTGAGGTGCTGCCTGGCGTGCGTGCTGCCGTGCGGCGCGCTGGACCTGGTCC
GGATCGTGCACCTGAGCGGCCGCGTCGACGAGTACGGCCGGGCCGTGCTCGCCGGGGAGGTCCTGGCGGCGCACCCGAAC
CACGTGCTCAGCCGGCCCTGCGGGTCCAGGCAGCAGGGCGGGCCGCGGATCGTCATCATCGTGTCGCCCGAGGCCGAGCT
GGAGCGCGGCGAGATCTACTTCCTCCTCCCGGCCGCCTCCGTGCCCGCCGACGCCAAGAAGAAGACCAAGACCAAGCGCG
AGCCGAGCCCCGGCGCC---GCCGCCGAGGAGGACCGGCGACACCATCGCCA---------CCACGTCCGGAGCAAGTCG
GAAGGCAGCGCGGCCACGGCCGCCGTCGAAGGTCGCCAGCAGCAGCAGCAGCAGCAGCAGCACCGGAGGCGCATGAGCAC
CGGCAGCCACGCCACGTCGTGGCACCCGCACCTGGCGCGCATCGCCGAGGACCCCTGATCGAGCTCTGGCTCCCGGTCGT
GCCGGTATTGTCCTTTCTGCATGGATGGTCTCATTTTCCTGTCTGATCGCGTGGTAAATATTCCTGTTGCATGTCTCACA
TTTATTTTTGTC-TTGTTAATCCACCCCCAAGTGTACATTCGATTCAAGTGTCGCGTGTGTGAAGAGAACAATGCTGTGA
CCGTGGCATATGTTTCTTTTTGAGTTTTGAACTTTGTGATTTGTGCTTTGTGACACTTTTTTTTTTGACGTGGGTGCTTT
GTGACACTTCTGTTGTAAATACAAA-GGAGCTGTCAATTTTGGTCTCTCCTACTGCCGTTTATTTAA-------------
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>SNPs
SSSSSSSSSSSSSSSS----------------S-S-SSSSS-------------S--S----------------------
---SS---S--S-----S-------S--SS---SS-----------SSS--------SS--S----------S-------
--S-------------------------S-------------------------------------S-------------
------S-------------------------------------------------------S-----------------
----------------------------------------------------------SS----------------S---
---------------------S-----------------------S----------------------------------
----------------S----------------------S----------------------------------------
-----------------SS-----------------------------------------------SS---------S--
SS-----SS--S--------------------------S--------------S--------------------------
-------S------------------------------------------------------------------------
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----------------------------------S---------------------------------------------
---------SSS--S-----------------------------------------------------------------
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------------------------------------------------------------------S-------------
-------S----------------------------SS--S-----------SSSSSSSSS---------S---------
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----------------------------------------------------------------S---------------
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-------S------------S----------------------------S-----------S------------------
---------------S-S-----------------------------------------------------------S--
-------------------------S--------------------------S--------S-----SSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_98
------------------------------------------------------------------------------TA
TGATCGTGCGCGTCATCC--------------------------------------------------------------
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>reverse_2059
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----------------------------------------------------------CAGGTTGAGCCGGGATCATT--
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